AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1220740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220740 MtrunA17_Chr4g0072111 92.347 196 10 1 1 191 1 196 1.19e-109 311
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220740 AT5G57345.1 57.754 187 72 3 5 191 9 188 9.02e-48 154

Find 71 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAATATAGATGTTTAA+AGG 0.274646 8_1:-84020948 Msa1220740:three_prime_UTR
ACATATGTGTGACCAATATT+TGG 0.311499 8_1:-84020912 Msa1220740:three_prime_UTR
GCCATACTATGGTGGTGGTT+GGG 0.312006 8_1:-84021199 Msa1220740:CDS
AACAATCTTCAACTCCATTA+AGG 0.317786 8_1:-84023069 Msa1220740:intron
TGGTATTTGAGGGAGATAGA+AGG 0.318024 8_1:-84023284 Msa1220740:five_prime_UTR
CCTGGTGCAAAGAAAGAAAA+TGG 0.328053 8_1:+84021168 None:intergenic
ACCAATTCTACCACCAGTTT+TGG 0.337468 8_1:+84022872 None:intergenic
GAATTGTTATTGTTGATTCT+TGG 0.352408 8_1:+84022810 None:intergenic
CCCCAACCACCACCATAGTA+TGG 0.355295 8_1:+84021198 None:intergenic
AAGAAGAATGAGAACAAGTT+AGG 0.368246 8_1:-84022963 Msa1220740:CDS
TGCAGTTGTGAGGAAATTCT+TGG 0.380171 8_1:-84021073 Msa1220740:CDS
CCATACTATGGTGGTGGTTG+GGG 0.384922 8_1:-84021198 Msa1220740:CDS
CCTCCACTAGGTGGTGGATA+CGG 0.391006 8_1:-84021234 Msa1220740:CDS
TGCCATACTATGGTGGTGGT+TGG 0.397465 8_1:-84021200 Msa1220740:CDS
GATGATGATTACTAGCTTGT+TGG 0.412958 8_1:-84021027 Msa1220740:exon
TCCTGCTGCTCCTAAAAGTT+GGG 0.413791 8_1:+84023137 None:intergenic
TACGGTGGTGTGCCATACTA+TGG 0.417463 8_1:-84021210 Msa1220740:CDS
GAATCAACAATAACAATTCC+AGG 0.432239 8_1:-84022806 Msa1220740:intron
TATCTCAAAAGACCAAATAT+TGG 0.436098 8_1:+84020900 None:intergenic
AATATAGATGTTTAAAGGAA+TGG 0.446403 8_1:-84020943 Msa1220740:three_prime_UTR
GATGCATCAGCTGCCAAAAC+TGG 0.451635 8_1:-84022885 Msa1220740:CDS
AGGAAAAGAGTTGGTATTTG+AGG 0.456509 8_1:-84023295 Msa1220740:five_prime_UTR
GTCCTGCTGCTCCTAAAAGT+TGG 0.462508 8_1:+84023136 None:intergenic
GCCAAAACTGGTGGTAGAAT+TGG 0.463723 8_1:-84022873 Msa1220740:CDS
CCACGGGTGGCGCCTCCACT+AGG 0.472801 8_1:-84021246 Msa1220740:CDS
GGAAAAGAGTTGGTATTTGA+GGG 0.474287 8_1:-84023294 Msa1220740:five_prime_UTR
ACTATGGTGGTGGTTGGGGA+TGG 0.480924 8_1:-84021194 Msa1220740:CDS
CTCCACTAGGTGGTGGATAC+GGG 0.491592 8_1:-84021233 Msa1220740:CDS
TTGTTGATTCTTGGTGAGGA+AGG 0.491949 8_1:+84022819 None:intergenic
GCTGCTGGTGTGTTAACGTT+TGG 0.494174 8_1:-84022918 Msa1220740:CDS
GCAATGATTGCAGTGGCTGC+TGG 0.497359 8_1:-84022933 Msa1220740:CDS
CCGAGTGTTGCAGTAGGCGT+TGG 0.513639 8_1:-84021144 Msa1220740:CDS
GTTGCAGTAGGCGTTGGAGG+TGG 0.519811 8_1:-84021138 Msa1220740:CDS
AGTGTTGCAGTAGGCGTTGG+AGG 0.520000 8_1:-84021141 Msa1220740:CDS
AAAGTTGGGTTAAGAAGTGT+TGG 0.530509 8_1:+84023151 None:intergenic
GTGGCGCCTCCACTAGGTGG+TGG 0.533635 8_1:-84021240 Msa1220740:CDS
AATTAAACTTATTTGTGACA+TGG 0.533737 8_1:-84023427 Msa1220740:five_prime_UTR
GCAGTTGTGAGGAAATTCTT+GGG 0.538440 8_1:-84021072 Msa1220740:CDS
CTAGGTGGTGGATACGGGTA+CGG 0.541215 8_1:-84021228 Msa1220740:CDS
GAAGTGTTGGTGAAGAGATG+AGG 0.545411 8_1:+84023164 None:intergenic
TGTTGATTCTTGGTGAGGAA+GGG 0.549367 8_1:+84022820 None:intergenic
CCGTGGATTTATATAGATGT+TGG 0.558960 8_1:+84021263 None:intergenic
CCTACTGCAACACTCGGACC+TGG 0.565214 8_1:+84021150 None:intergenic
GCGAGGAGCGGATGATCTGA+AGG 0.565349 8_1:+84022842 None:intergenic
GTGCTGCTGCTGCAGTTGTG+AGG 0.568041 8_1:-84021083 Msa1220740:CDS
CACGTGGCAACTCAAGAACC+AGG 0.584030 8_1:-84023315 Msa1220740:five_prime_UTR
CCAGGTCCGAGTGTTGCAGT+AGG 0.586325 8_1:-84021150 Msa1220740:CDS
GGAGTTGAAGATTGTTGTTG+TGG 0.590399 8_1:+84023076 None:intergenic
ATTCTTGGTGAGGAAGGGCG+AGG 0.590888 8_1:+84022825 None:intergenic
TCAAGAACCAGGAAAAGAGT+TGG 0.594806 8_1:-84023304 Msa1220740:five_prime_UTR
AAAACTGGTGGTAGAATTGG+TGG 0.598132 8_1:-84022870 Msa1220740:CDS
GAGGAAGCTTTGCTGTGACA+AGG 0.599879 8_1:+84023183 None:intergenic
TAGACGTAAATATGCATCAG+AGG 0.607892 8_1:+84020776 None:intergenic
CCAACGCCTACTGCAACACT+CGG 0.613463 8_1:+84021144 None:intergenic
GTTATTGTTGATTCTTGGTG+AGG 0.615397 8_1:+84022815 None:intergenic
CCAACATCTATATAAATCCA+CGG 0.616856 8_1:-84021263 Msa1220740:CDS
TGGTGAGGAAGGGCGAGGAG+CGG 0.629460 8_1:+84022830 None:intergenic
AGACGTAAATATGCATCAGA+GGG 0.631132 8_1:+84020777 None:intergenic
CAACATCTATATAAATCCAC+GGG 0.636919 8_1:-84021262 Msa1220740:CDS
GGTGTGCCATACTATGGTGG+TGG 0.643399 8_1:-84021204 Msa1220740:CDS
CGGGTGGCGCCTCCACTAGG+TGG 0.653412 8_1:-84021243 Msa1220740:CDS
AAAGTTAGCAATGATTGCAG+TGG 0.664147 8_1:-84022940 Msa1220740:CDS
CATCTATATAAATCCACGGG+TGG 0.671598 8_1:-84021259 Msa1220740:CDS
GGTGGTGGATACGGGTACGG+TGG 0.672411 8_1:-84021225 Msa1220740:CDS
GTTGTGAGGAAATTCTTGGG+AGG 0.683288 8_1:-84021069 Msa1220740:CDS
TACCCGTATCCACCACCTAG+TGG 0.684635 8_1:+84021231 None:intergenic
CAGCAGGACGAGGAAGACTG+TGG 0.702489 8_1:-84023122 Msa1220740:CDS
GCATCAGCTGCCAAAACTGG+TGG 0.706688 8_1:-84022882 Msa1220740:CDS
AAAATGGTAATTGTGGCACG+TGG 0.715975 8_1:-84023331 Msa1220740:five_prime_UTR
CCGTATCCACCACCTAGTGG+AGG 0.722573 8_1:+84021234 None:intergenic
GGTGGTGTGCCATACTATGG+TGG 0.778885 8_1:-84021207 Msa1220740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGAAACAAAAAAAAT+TGG + chr8_1:84022617-84022636 None:intergenic 10.0%
!! TGATTATACTATATACTTAT+AGG - chr8_1:84021513-84021532 Msa1220740:intron 15.0%
!! TGTTTAATATAGATGTTTAA+AGG - chr8_1:84023291-84023310 Msa1220740:five_prime_UTR 15.0%
!! AATTAAACTTATTTGTGACA+TGG - chr8_1:84020812-84020831 Msa1220740:three_prime_UTR 20.0%
!! ACGCAAAAATAAAAACAAAA+TGG - chr8_1:84020892-84020911 Msa1220740:three_prime_UTR 20.0%
!! TAAAAACAAAATGGTAATTG+TGG - chr8_1:84020901-84020920 Msa1220740:three_prime_UTR 20.0%
!! ATAAACAAATAAGCAAAAAC+AGG - chr8_1:84020981-84021000 Msa1220740:three_prime_UTR 20.0%
!! AAGGAAAAATAAATGTTTCT+AGG - chr8_1:84021468-84021487 Msa1220740:intron 20.0%
!! TACAATTATCAACAAATACA+AGG + chr8_1:84021774-84021793 None:intergenic 20.0%
!!! TAGTTGTATTTTTCTTCTTT+GGG - chr8_1:84021881-84021900 Msa1220740:intron 20.0%
!!! TTCATTTTTGTTAGTTGTTT+AGG - chr8_1:84021943-84021962 Msa1220740:intron 20.0%
!!! TTTAGTCTTATTCTGAAAAT+AGG - chr8_1:84022581-84022600 Msa1220740:intron 20.0%
!!! TATTTTTATACAGACAATGT+TGG - chr8_1:84022631-84022650 Msa1220740:intron 20.0%
!! AATATGATCTCTAATGATAT+AGG + chr8_1:84022792-84022811 None:intergenic 20.0%
!! AATGAAATCTCTTTCATAAT+TGG - chr8_1:84022818-84022837 Msa1220740:CDS 20.0%
!! AATATAGATGTTTAAAGGAA+TGG - chr8_1:84023296-84023315 Msa1220740:five_prime_UTR 20.0%
!! AATGTTTTTCCATCAGTTTT+TGG + chr8_1:84020757-84020776 None:intergenic 25.0%
!!! ATTTTTGTGTTGATAAAGCT+TGG + chr8_1:84020795-84020814 None:intergenic 25.0%
!! TTTTGATGTAGTTACCTTAA+TGG + chr8_1:84021187-84021206 None:intergenic 25.0%
!! TTTGCTTTGTTATACTTGAA+TGG - chr8_1:84021228-84021247 Msa1220740:CDS 25.0%
!!! GAATTGTTATTGTTGATTCT+TGG + chr8_1:84021432-84021451 None:intergenic 25.0%
! TAATACTACCTAGAGAAAAT+AGG + chr8_1:84021582-84021601 None:intergenic 25.0%
! TAATTCCAAAATTTGCATCA+AGG + chr8_1:84021644-84021663 None:intergenic 25.0%
! AGTTTAATTATGATACCTAC+GGG + chr8_1:84021734-84021753 None:intergenic 25.0%
! CAGTTTAATTATGATACCTA+CGG + chr8_1:84021735-84021754 None:intergenic 25.0%
!! GTAGTTGTATTTTTCTTCTT+TGG - chr8_1:84021880-84021899 Msa1220740:intron 25.0%
! TCATGTTTACGATATTAGTT+GGG - chr8_1:84022003-84022022 Msa1220740:intron 25.0%
! TTGTACATTTGGTTATACTT+CGG - chr8_1:84022042-84022061 Msa1220740:intron 25.0%
! ACTAAGGAGTTTATAAATGA+TGG + chr8_1:84022178-84022197 None:intergenic 25.0%
! AAAAAAAAGAAAGCCTCATT+TGG + chr8_1:84022258-84022277 None:intergenic 25.0%
! TGACAAACAGGTAAATAAAA+AGG + chr8_1:84022281-84022300 None:intergenic 25.0%
! GTAGAAATATATCTGTTAGT+TGG - chr8_1:84022436-84022455 Msa1220740:intron 25.0%
! AAATCTCTTTCATAATTGGA+AGG - chr8_1:84022822-84022841 Msa1220740:CDS 25.0%
! TATCTCAAAAGACCAAATAT+TGG + chr8_1:84023342-84023361 None:intergenic 25.0%
!! GTGTGAATACATTTTTCTAA+TGG - chr8_1:84023406-84023425 Msa1220740:five_prime_UTR 25.0%
! AAGGAACACATTTTTGATGT+CGG + chr8_1:84021040-84021059 None:intergenic 30.0%
AACAATCTTCAACTCCATTA+AGG - chr8_1:84021170-84021189 Msa1220740:CDS 30.0%
AAGAAGAATGAGAACAAGTT+AGG - chr8_1:84021276-84021295 Msa1220740:intron 30.0%
GAATCAACAATAACAATTCC+AGG - chr8_1:84021433-84021452 Msa1220740:intron 30.0%
TTCCAGGTATCTAACAAAAA+AGG - chr8_1:84021449-84021468 Msa1220740:intron 30.0%
!!! TTCCTTTTTTGTTAGATACC+TGG + chr8_1:84021454-84021473 None:intergenic 30.0%
CTAGAGAAAATAGGTTAGAA+TGG + chr8_1:84021573-84021592 None:intergenic 30.0%
! CATTCTAACCTATTTTCTCT+AGG - chr8_1:84021571-84021590 Msa1220740:intron 30.0%
CGTAGGTATCATAATTAAAC+TGG - chr8_1:84021733-84021752 Msa1220740:intron 30.0%
CTAACAAAAATGAAGACTTG+TGG + chr8_1:84021937-84021956 None:intergenic 30.0%
TGTTTGAACTTGAGTATTAG+AGG - chr8_1:84021977-84021996 Msa1220740:intron 30.0%
GTTTGAACTTGAGTATTAGA+GGG - chr8_1:84021978-84021997 Msa1220740:intron 30.0%
CAACTAATATCGTAAACATG+AGG + chr8_1:84022004-84022023 None:intergenic 30.0%
CTCATGTTTACGATATTAGT+TGG - chr8_1:84022002-84022021 Msa1220740:intron 30.0%
GGTTAAAAAGTTCGAACAAA+TGG - chr8_1:84022141-84022160 Msa1220740:intron 30.0%
! CTGTTTGTCACTTAGATATT+CGG - chr8_1:84022291-84022310 Msa1220740:intron 30.0%
!!! GATATTCGGTTTTTTCTTCT+AGG - chr8_1:84022305-84022324 Msa1220740:intron 30.0%
!! TGAAAGCGCTAAAATTTGAA+AGG + chr8_1:84022366-84022385 None:intergenic 30.0%
!! TTAGCGCTTTCATTTTGTTT+AGG - chr8_1:84022374-84022393 Msa1220740:intron 30.0%
!! TAGCGCTTTCATTTTGTTTA+GGG - chr8_1:84022375-84022394 Msa1220740:intron 30.0%
! GATATATTTCTACACTCCAT+TGG + chr8_1:84022429-84022448 None:intergenic 30.0%
AGTATGCGTTAGAAATTAAG+AGG + chr8_1:84022547-84022566 None:intergenic 30.0%
CCTTAAGTATATATCTCAGT+TGG + chr8_1:84022739-84022758 None:intergenic 30.0%
CCAACTGAGATATATACTTA+AGG - chr8_1:84022736-84022755 Msa1220740:intron 30.0%
CCAACATCTATATAAATCCA+CGG - chr8_1:84022976-84022995 Msa1220740:intron 30.0%
CAACATCTATATAAATCCAC+GGG - chr8_1:84022977-84022996 Msa1220740:intron 30.0%
!!! CTGCTTCTGTTTATGTTTTT+TGG - chr8_1:84023134-84023153 Msa1220740:CDS 30.0%
ACATATGTGTGACCAATATT+TGG - chr8_1:84023327-84023346 Msa1220740:five_prime_UTR 30.0%
! ATTTTTCTAATGGTGTCTCA+GGG - chr8_1:84023416-84023435 Msa1220740:five_prime_UTR 30.0%
! TCAAATACCAACTCTTTTCC+TGG + chr8_1:84020945-84020964 None:intergenic 35.0%
!! AGGAAAAGAGTTGGTATTTG+AGG - chr8_1:84020944-84020963 Msa1220740:three_prime_UTR 35.0%
!! GGAAAAGAGTTGGTATTTGA+GGG - chr8_1:84020945-84020964 Msa1220740:three_prime_UTR 35.0%
! AAAGTTGGGTTAAGAAGTGT+TGG + chr8_1:84021091-84021110 None:intergenic 35.0%
! CACTTCTTAACCCAACTTTT+AGG - chr8_1:84021092-84021111 Msa1220740:CDS 35.0%
AAAGTTAGCAATGATTGCAG+TGG - chr8_1:84021299-84021318 Msa1220740:intron 35.0%
!! GTTATTGTTGATTCTTGGTG+AGG + chr8_1:84021427-84021446 None:intergenic 35.0%
TTCCAAAATTTGCATCAAGG+AGG + chr8_1:84021641-84021660 None:intergenic 35.0%
ACAACAACTATAGCGACAAA+AGG + chr8_1:84021802-84021821 None:intergenic 35.0%
ACTAAAGAGGGTTGTACATT+TGG - chr8_1:84022031-84022050 Msa1220740:intron 35.0%
CAATGTTACCACACTCTATT+GGG + chr8_1:84022085-84022104 None:intergenic 35.0%
ACAATGTTACCACACTCTAT+TGG + chr8_1:84022086-84022105 None:intergenic 35.0%
GGTGAAAACAAGGAAAACTA+AGG + chr8_1:84022194-84022213 None:intergenic 35.0%
CGAAATTAAGAAGTCTCACT+CGG + chr8_1:84022215-84022234 None:intergenic 35.0%
CGAATATCTAAGTGACAAAC+AGG + chr8_1:84022293-84022312 None:intergenic 35.0%
!! AGTCCATTGGTTTGAACTAT+TGG + chr8_1:84022482-84022501 None:intergenic 35.0%
!! ATGGAGAATTTTGAGTCCAT+TGG + chr8_1:84022495-84022514 None:intergenic 35.0%
!!! ACATGGAAGCAGTTTTAAGT+AGG + chr8_1:84022705-84022724 None:intergenic 35.0%
! ACCTATCTGTCTCATTTTGT+TGG - chr8_1:84022912-84022931 Msa1220740:CDS 35.0%
TCCAACAAAATGAGACAGAT+AGG + chr8_1:84022916-84022935 None:intergenic 35.0%
CCGTGGATTTATATAGATGT+TGG + chr8_1:84022979-84022998 None:intergenic 35.0%
! GATGATGATTACTAGCTTGT+TGG - chr8_1:84023212-84023231 Msa1220740:exon 35.0%
! CATTTTTCTAATGGTGTCTC+AGG - chr8_1:84023415-84023434 Msa1220740:five_prime_UTR 35.0%
AGACGTAAATATGCATCAGA+GGG + chr8_1:84023465-84023484 None:intergenic 35.0%
TAGACGTAAATATGCATCAG+AGG + chr8_1:84023466-84023485 None:intergenic 35.0%
AAAATGGTAATTGTGGCACG+TGG - chr8_1:84020908-84020927 Msa1220740:three_prime_UTR 40.0%
TCAAGAACCAGGAAAAGAGT+TGG - chr8_1:84020935-84020954 Msa1220740:three_prime_UTR 40.0%
TGGTATTTGAGGGAGATAGA+AGG - chr8_1:84020955-84020974 Msa1220740:three_prime_UTR 40.0%
! GGAGTTGAAGATTGTTGTTG+TGG + chr8_1:84021166-84021185 None:intergenic 40.0%
! ACCAATTCTACCACCAGTTT+TGG + chr8_1:84021370-84021389 None:intergenic 40.0%
AAAACTGGTGGTAGAATTGG+TGG - chr8_1:84021369-84021388 Msa1220740:intron 40.0%
!! TGTTGATTCTTGGTGAGGAA+GGG + chr8_1:84021422-84021441 None:intergenic 40.0%
!! TTGTTGATTCTTGGTGAGGA+AGG + chr8_1:84021423-84021442 None:intergenic 40.0%
! CTCCTCCTTGATGCAAATTT+TGG - chr8_1:84021636-84021655 Msa1220740:intron 40.0%
!! GTTGTTGTTTGTCTCCTTGT+CGG - chr8_1:84021814-84021833 Msa1220740:intron 40.0%
! TGTACAACCCTCTTTAGTTC+AGG + chr8_1:84022029-84022048 None:intergenic 40.0%
GTGGTAACATTGTGAGTAGT+TGG - chr8_1:84022093-84022112 Msa1220740:intron 40.0%
! TTGGTGTTCTTAAGTGTAGC+AGG - chr8_1:84022112-84022131 Msa1220740:intron 40.0%
! TGTTCGAACTTTTTAACCGC+TGG + chr8_1:84022139-84022158 None:intergenic 40.0%
AAAGCCTCATTTGGACTTGA+GGG + chr8_1:84022249-84022268 None:intergenic 40.0%
! TTTTCTTCTAGGCTTGTGAG+AGG - chr8_1:84022316-84022335 Msa1220740:intron 40.0%
! CGCTAAAATTTGAAAGGTGC+AGG + chr8_1:84022360-84022379 None:intergenic 40.0%
TAGTTGGCATTCTCAAGAGT+AGG - chr8_1:84022452-84022471 Msa1220740:intron 40.0%
GGTCCAATAGTTCAAACCAA+TGG - chr8_1:84022476-84022495 Msa1220740:intron 40.0%
GTGGGAACATGGAAAAGTAA+TGG + chr8_1:84022514-84022533 None:intergenic 40.0%
!! AGTTGGTGAGATAAGAGACA+TGG + chr8_1:84022722-84022741 None:intergenic 40.0%
TTTCGTATCTGTATGTCGAC+AGG - chr8_1:84022952-84022971 Msa1220740:CDS 40.0%
CATCTATATAAATCCACGGG+TGG - chr8_1:84022980-84022999 Msa1220740:intron 40.0%
CCTGGTGCAAAGAAAGAAAA+TGG + chr8_1:84023074-84023093 None:intergenic 40.0%
! CCATTTTCTTTCTTTGCACC+AGG - chr8_1:84023071-84023090 Msa1220740:CDS 40.0%
TGCAGTTGTGAGGAAATTCT+TGG - chr8_1:84023166-84023185 Msa1220740:CDS 40.0%
GCAGTTGTGAGGAAATTCTT+GGG - chr8_1:84023167-84023186 Msa1220740:CDS 40.0%
!! GAAGTGTTGGTGAAGAGATG+AGG + chr8_1:84021078-84021097 None:intergenic 45.0%
TCCTGCTGCTCCTAAAAGTT+GGG + chr8_1:84021105-84021124 None:intergenic 45.0%
GCCAAAACTGGTGGTAGAAT+TGG - chr8_1:84021366-84021385 Msa1220740:intron 45.0%
ATACCTACGGGCATCAATGT+CGG + chr8_1:84021722-84021741 None:intergenic 45.0%
TGAAGACTTCTGACCGTAAC+TGG - chr8_1:84021843-84021862 Msa1220740:intron 45.0%
GAAGACTTCTGACCGTAACT+GGG - chr8_1:84021844-84021863 Msa1220740:intron 45.0%
AGAGCAAGAAGACCCAGTTA+CGG + chr8_1:84021859-84021878 None:intergenic 45.0%
TAGTTGGGCCTGAACTAAAG+AGG - chr8_1:84022018-84022037 Msa1220740:intron 45.0%
AGTTGGGCCTGAACTAAAGA+GGG - chr8_1:84022019-84022038 Msa1220740:intron 45.0%
TCCAAAGACCCAATAGAGTG+TGG - chr8_1:84022074-84022093 Msa1220740:intron 45.0%
ACCACACTCTATTGGGTCTT+TGG + chr8_1:84022078-84022097 None:intergenic 45.0%
! AGTCTCACTCGGTGAAAACA+AGG + chr8_1:84022204-84022223 None:intergenic 45.0%
AAGCCTCATTTGGACTTGAG+GGG + chr8_1:84022248-84022267 None:intergenic 45.0%
GAAAGCCTCATTTGGACTTG+AGG + chr8_1:84022250-84022269 None:intergenic 45.0%
TGTTTAGGGACCAGTGAATG+AGG - chr8_1:84022389-84022408 Msa1220740:intron 45.0%
!! TTTCTACACTCCATTGGCTC+TGG + chr8_1:84022423-84022442 None:intergenic 45.0%
TTGGCATTCTCAAGAGTAGG+AGG - chr8_1:84022455-84022474 Msa1220740:intron 45.0%
GTTGTGAGGAAATTCTTGGG+AGG - chr8_1:84023170-84023189 Msa1220740:CDS 45.0%
!! CTTAAATATTATATATAAAT+AGG - chr8_1:84021253-84021272 Msa1220740:CDS 5.0%
! GAGGAAGCTTTGCTGTGACA+AGG + chr8_1:84021059-84021078 None:intergenic 50.0%
!! ACCCAACTTTTAGGAGCAGC+AGG - chr8_1:84021101-84021120 Msa1220740:CDS 50.0%
GTCCTGCTGCTCCTAAAAGT+TGG + chr8_1:84021106-84021125 None:intergenic 50.0%
GCTGCTGGTGTGTTAACGTT+TGG - chr8_1:84021321-84021340 Msa1220740:intron 50.0%
GATGCATCAGCTGCCAAAAC+TGG - chr8_1:84021354-84021373 Msa1220740:intron 50.0%
! TTTGCATCAAGGAGGAGCGT+TGG + chr8_1:84021633-84021652 None:intergenic 50.0%
!! GTTTGTCTCCTTGTCGGCTT+TGG - chr8_1:84021820-84021839 Msa1220740:intron 50.0%
AGTCTTCACCAAAGCCGACA+AGG + chr8_1:84021831-84021850 None:intergenic 50.0%
CTTAAGTGTAGCAGGTCCAG+CGG - chr8_1:84022120-84022139 Msa1220740:intron 50.0%
AGCCTCATTTGGACTTGAGG+GGG + chr8_1:84022247-84022266 None:intergenic 50.0%
GGTATCAGAGCCTCATTCAC+TGG + chr8_1:84022402-84022421 None:intergenic 50.0%
TTTCCATGTTCCCACACGTG+TGG - chr8_1:84022519-84022538 Msa1220740:intron 50.0%
TTCCATGTTCCCACACGTGT+GGG - chr8_1:84022520-84022539 Msa1220740:intron 50.0%
TTAAGAGGTCCCACACGTGT+GGG + chr8_1:84022532-84022551 None:intergenic 50.0%
ATTAAGAGGTCCCACACGTG+TGG + chr8_1:84022533-84022552 None:intergenic 50.0%
TACGGTGGTGTGCCATACTA+TGG - chr8_1:84023029-84023048 Msa1220740:intron 50.0%
!! TGCCATACTATGGTGGTGGT+TGG - chr8_1:84023039-84023058 Msa1220740:intron 50.0%
!! GCCATACTATGGTGGTGGTT+GGG - chr8_1:84023040-84023059 Msa1220740:intron 50.0%
!! CCATACTATGGTGGTGGTTG+GGG - chr8_1:84023041-84023060 Msa1220740:intron 50.0%
CACGTGGCAACTCAAGAACC+AGG - chr8_1:84020924-84020943 Msa1220740:three_prime_UTR 55.0%
!! CTTTTAGGAGCAGCAGGACG+AGG - chr8_1:84021107-84021126 Msa1220740:CDS 55.0%
GCAATGATTGCAGTGGCTGC+TGG - chr8_1:84021306-84021325 Msa1220740:intron 55.0%
GCATCAGCTGCCAAAACTGG+TGG - chr8_1:84021357-84021376 Msa1220740:intron 55.0%
ATTCTTGGTGAGGAAGGGCG+AGG + chr8_1:84021417-84021436 None:intergenic 55.0%
TCCCCCCTCAAGTCCAAATG+AGG - chr8_1:84022242-84022261 Msa1220740:intron 55.0%
GCCTCATTTGGACTTGAGGG+GGG + chr8_1:84022246-84022265 None:intergenic 55.0%
! GGCTCTGATACCAGAGCCAA+TGG - chr8_1:84022410-84022429 Msa1220740:intron 55.0%
!! CCTCCACTAGGTGGTGGATA+CGG - chr8_1:84023005-84023024 Msa1220740:intron 55.0%
!! CTCCACTAGGTGGTGGATAC+GGG - chr8_1:84023006-84023025 Msa1220740:intron 55.0%
TACCCGTATCCACCACCTAG+TGG + chr8_1:84023011-84023030 None:intergenic 55.0%
!! CTAGGTGGTGGATACGGGTA+CGG - chr8_1:84023011-84023030 Msa1220740:intron 55.0%
GGTGGTGTGCCATACTATGG+TGG - chr8_1:84023032-84023051 Msa1220740:intron 55.0%
GGTGTGCCATACTATGGTGG+TGG - chr8_1:84023035-84023054 Msa1220740:intron 55.0%
CCCCAACCACCACCATAGTA+TGG + chr8_1:84023044-84023063 None:intergenic 55.0%
!! ACTATGGTGGTGGTTGGGGA+TGG - chr8_1:84023045-84023064 Msa1220740:intron 55.0%
CCAACGCCTACTGCAACACT+CGG + chr8_1:84023098-84023117 None:intergenic 55.0%
!! AGTGTTGCAGTAGGCGTTGG+AGG - chr8_1:84023098-84023117 Msa1220740:CDS 55.0%
CAGCAGGACGAGGAAGACTG+TGG - chr8_1:84021117-84021136 Msa1220740:CDS 60.0%
GCGAGGAGCGGATGATCTGA+AGG + chr8_1:84021400-84021419 None:intergenic 60.0%
CCTACGGGCATCAATGTCGG+AGG + chr8_1:84021719-84021738 None:intergenic 60.0%
CCTCCGACATTGATGCCCGT+AGG - chr8_1:84021716-84021735 Msa1220740:intron 60.0%
CTAGGCTTGTGAGAGGTCCC+TGG - chr8_1:84022323-84022342 Msa1220740:intron 60.0%
! GAAAGGTGCAGGTAGCCGCA+CGG + chr8_1:84022349-84022368 None:intergenic 60.0%
GTCCCACACGTGTGGGAACA+TGG + chr8_1:84022525-84022544 None:intergenic 60.0%
CCGTATCCACCACCTAGTGG+AGG + chr8_1:84023008-84023027 None:intergenic 60.0%
CCTACTGCAACACTCGGACC+TGG + chr8_1:84023092-84023111 None:intergenic 60.0%
! CCAGGTCCGAGTGTTGCAGT+AGG - chr8_1:84023089-84023108 Msa1220740:CDS 60.0%
! CCGAGTGTTGCAGTAGGCGT+TGG - chr8_1:84023095-84023114 Msa1220740:CDS 60.0%
!! GTTGCAGTAGGCGTTGGAGG+TGG - chr8_1:84023101-84023120 Msa1220740:CDS 60.0%
! GTGCTGCTGCTGCAGTTGTG+AGG - chr8_1:84023156-84023175 Msa1220740:CDS 60.0%
TGGTGAGGAAGGGCGAGGAG+CGG + chr8_1:84021412-84021431 None:intergenic 65.0%
!! GGTGGTGGATACGGGTACGG+TGG - chr8_1:84023014-84023033 Msa1220740:intron 65.0%
GTGAGAGGTCCCTGGCCGTG+CGG - chr8_1:84022331-84022350 Msa1220740:intron 70.0%
TGCAGGTAGCCGCACGGCCA+GGG + chr8_1:84022343-84022362 None:intergenic 70.0%
GTGGCGCCTCCACTAGGTGG+TGG - chr8_1:84022999-84023018 Msa1220740:intron 70.0%
GTGCAGGTAGCCGCACGGCC+AGG + chr8_1:84022344-84022363 None:intergenic 75.0%
!! CCTAGTGGAGGCGCCACCCG+TGG + chr8_1:84022996-84023015 None:intergenic 75.0%
CCACGGGTGGCGCCTCCACT+AGG - chr8_1:84022993-84023012 Msa1220740:intron 75.0%
CGGGTGGCGCCTCCACTAGG+TGG - chr8_1:84022996-84023015 Msa1220740:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 84020747 84023514 84020747 ID=Msa1220740;Name=Msa1220740
chr8_1 mRNA 84020747 84023514 84020747 ID=Msa1220740-mRNA-1;Parent=Msa1220740;Name=Msa1220740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=302|1|1|1|1|1|3|288|191
chr8_1 exon 84020747 84021287 84020747 ID=Msa1220740-mRNA-1:exon:30156;Parent=Msa1220740-mRNA-1
chr8_1 exon 84022807 84022986 84022807 ID=Msa1220740-mRNA-1:exon:30155;Parent=Msa1220740-mRNA-1
chr8_1 exon 84023070 84023514 84023070 ID=Msa1220740-mRNA-1:exon:30154;Parent=Msa1220740-mRNA-1
chr8_1 five_prime_UTR 84023213 84023514 84023213 ID=Msa1220740-mRNA-1:five_prime_utr;Parent=Msa1220740-mRNA-1
chr8_1 CDS 84023070 84023212 84023070 ID=Msa1220740-mRNA-1:cds;Parent=Msa1220740-mRNA-1
chr8_1 CDS 84022807 84022986 84022807 ID=Msa1220740-mRNA-1:cds;Parent=Msa1220740-mRNA-1
chr8_1 CDS 84021035 84021287 84021035 ID=Msa1220740-mRNA-1:cds;Parent=Msa1220740-mRNA-1
chr8_1 three_prime_UTR 84020747 84021034 84020747 ID=Msa1220740-mRNA-1:three_prime_utr;Parent=Msa1220740-mRNA-1
Gene Sequence

>Msa1220740

ATGTGTTCCTTGTCACAGCAAAGCTTCCTCATCTCTTCACCAACACTTCTTAACCCAACTTTTAGGAGCAGCAGGACGAGGAAGACTGTGGTTGTCTACTGCAGTTGCACACAGCCACAACAACAATCTTCAACTCCATTAAGGAAGAAGAATGAGAACAAGTTAGGAAAGTTAGCAATGATTGCAGTGGCTGCTGGTGTGTTAACGTTTGGATCAGTTCATGATGCATCAGCTGCCAAAACTGGTGGTAGAATTGGTGGTCAGTCCTTCAGATCATCCGCTCCTCGCCCTTCCTCACCAAGAATCAACAATAACAATTCCAGGACCAACATCTATATAAATCCACGGGTGGCGCCTCCACTAGGTGGTGGATACGGGTACGGTGGTGTGCCATACTATGGTGGTGGTTGGGGATGGTCTCCATTTTCTTTCTTTGCACCAGGTCCGAGTGTTGCAGTAGGCGTTGGAGGTGGATTTGATACTCTGCTTCTGTTTATGTTTTTTGGTGCTGCTGCTGCAGTTGTGAGGAAATTCTTGGGAGGATCAAGAAATGTTGATGATGATGATGATTACTAG

Protein sequence

>Msa1220740

MCSLSQQSFLISSPTLLNPTFRSSRTRKTVVVYCSCTQPQQQSSTPLRKKNENKLGKLAMIAVAAGVLTFGSVHDASAAKTGGRIGGQSFRSSAPRPSSPRINNNNSRTNIYINPRVAPPLGGGYGYGGVPYYGGGWGWSPFSFFAPGPSVAVGVGGGFDTLLLFMFFGAAAAVVRKFLGGSRNVDDDDDY*