Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0410530 | Msa0597060 | 0.886875 | 2.336106e-72 | -8.615850e-47 |
| Msa0410530 | Msa1465480 | 0.812593 | 3.922137e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTCATTGAAACTATTT+TGG | 0.085833 | 3_2:+52158847 | Msa0410530:three_prime_UTR |
| TGATTGTCAGGTGCAATTTC+TGG | 0.125651 | 3_2:-52158298 | None:intergenic |
| TAGACGCTCATGCGAGTTTC+AGG | 0.207083 | 3_2:+52155801 | Msa0410530:CDS |
| GGTCGTATTAGTACTCAATT+AGG | 0.259017 | 3_2:+52158889 | Msa0410530:three_prime_UTR |
| AAACTTATGACATGTTTAAT+AGG | 0.265647 | 3_2:+52158918 | Msa0410530:three_prime_UTR |
| AGCAATTGACCAAGTTGTTC+AGG | 0.309536 | 3_2:+52155825 | Msa0410530:CDS |
| TCCACTTCAGTTGCAGTTGC+AGG | 0.333680 | 3_2:-52158737 | None:intergenic |
| AAACTGTTGTACAAAGAAAA+TGG | 0.337235 | 3_2:+52158365 | Msa0410530:CDS |
| TATGTCAAACTCCTCTTAAC+AGG | 0.355223 | 3_2:-52158775 | None:intergenic |
| GACTTTGATGCAGGTTCCTT+AGG | 0.389244 | 3_2:-52158599 | None:intergenic |
| AAATAAAAGCACAATCTCAT+AGG | 0.447751 | 3_2:-52158810 | None:intergenic |
| TCAATCTCCACAATCAAAAT+CGG | 0.451486 | 3_2:-52158989 | None:intergenic |
| GTTGCAGGCACTTCAACATA+AGG | 0.458120 | 3_2:-52158722 | None:intergenic |
| TTGCAACCTCCTTGGTGCTG+TGG | 0.465444 | 3_2:+52158948 | Msa0410530:three_prime_UTR |
| TGTCCGCTATTCTGATTGTC+AGG | 0.478136 | 3_2:-52158310 | None:intergenic |
| GCTGATGTGCTCCTGTTAAG+AGG | 0.482144 | 3_2:+52158764 | Msa0410530:CDS |
| GAGCGCTTCCCTGAACAACT+TGG | 0.482525 | 3_2:-52155834 | None:intergenic |
| TTAACAGTAGTTTCTTGAAG+TGG | 0.495080 | 3_2:-52158487 | None:intergenic |
| GATTTGACAGACTTTGATGC+AGG | 0.507167 | 3_2:-52158608 | None:intergenic |
| ATCAAAGTCTGTCAAATCAA+AGG | 0.509063 | 3_2:+52158613 | Msa0410530:CDS |
| GTCGTATTAGTACTCAATTA+GGG | 0.510588 | 3_2:+52158890 | Msa0410530:three_prime_UTR |
| GCAATTGACCAAGTTGTTCA+GGG | 0.526513 | 3_2:+52155826 | Msa0410530:CDS |
| TCAAAGTCTGTCAAATCAAA+GGG | 0.530956 | 3_2:+52158614 | Msa0410530:CDS |
| CGGACAAGCTGCTGTAGAGT+TGG | 0.531235 | 3_2:+52158327 | Msa0410530:CDS |
| GCCTGCAACTGCAACTGAAG+TGG | 0.534825 | 3_2:+52158736 | Msa0410530:CDS |
| TCACAATGCTAGGACATGTA+AGG | 0.554869 | 3_2:+52158249 | Msa0410530:intron |
| ACTGATGTTGCTGTTGCTAA+CGG | 0.569270 | 3_2:+52158683 | Msa0410530:CDS |
| TGAAACATGCTGATTATCAA+TGG | 0.576217 | 3_2:+52155900 | Msa0410530:CDS |
| CAATGCTAGGACATGTAAGG+AGG | 0.606632 | 3_2:+52158252 | Msa0410530:intron |
| GCTGTAGAGTTGGCAACACA+AGG | 0.607943 | 3_2:+52158337 | Msa0410530:CDS |
| ATTTAATTAAGGGAGACCTA+AGG | 0.625686 | 3_2:+52158583 | Msa0410530:intron |
| AATGCTAGGACATGTAAGGA+GGG | 0.645012 | 3_2:+52158253 | Msa0410530:intron |
| TTTACAGCACCACAGCACCA+AGG | 0.695010 | 3_2:-52158957 | None:intergenic |
| GCACCTGACAATCAGAATAG+CGG | 0.695985 | 3_2:+52158307 | Msa0410530:CDS |
| ACAGCACCACAGCACCAAGG+AGG | 0.717756 | 3_2:-52158954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGGTTTAATAATTTTTTTT+TGG | + | chr3_2:52157358-52157377 | Msa0410530:intron | 10.0% |
| !! | AATAAATAAAAATAAATGCA+TGG | - | chr3_2:52157970-52157989 | None:intergenic | 10.0% |
| !! | TTCAAATAAATATTAAGAAA+GGG | + | chr3_2:52158404-52158423 | Msa0410530:intron | 10.0% |
| !! | TCCATAAATATTAAAGAATA+TGG | + | chr3_2:52156302-52156321 | Msa0410530:intron | 15.0% |
| !! | ACCATATTCTTTAATATTTA+TGG | - | chr3_2:52156306-52156325 | None:intergenic | 15.0% |
| !!! | AACTATAAAAGTACTTATAT+AGG | + | chr3_2:52156426-52156445 | Msa0410530:intron | 15.0% |
| !!! | TATAATGTGCTTTTTAATTA+TGG | + | chr3_2:52156686-52156705 | Msa0410530:intron | 15.0% |
| !! | TATTTCAAAAACATGTAAAA+TGG | - | chr3_2:52157279-52157298 | None:intergenic | 15.0% |
| !! | CTTCAAATAAATATTAAGAA+AGG | + | chr3_2:52158403-52158422 | Msa0410530:intron | 15.0% |
| !! | TGTATGTATGTATTTAATTA+AGG | + | chr3_2:52158572-52158591 | Msa0410530:intron | 15.0% |
| !! | GTATGTATGTATTTAATTAA+GGG | + | chr3_2:52158573-52158592 | Msa0410530:intron | 15.0% |
| !! | ATTCTTTAATATTTATGGAC+AGG | - | chr3_2:52156301-52156320 | None:intergenic | 20.0% |
| !!! | ATGAATTTTGTCTATATACT+TGG | + | chr3_2:52156354-52156373 | Msa0410530:intron | 20.0% |
| !! | AATTGTGTATATTAAAGTGT+TGG | + | chr3_2:52156763-52156782 | Msa0410530:intron | 20.0% |
| !!! | TTTTATTGTTATATGATCCT+TGG | + | chr3_2:52156866-52156885 | Msa0410530:intron | 20.0% |
| !! | TTATCAATAAAAAAACACCA+AGG | - | chr3_2:52156886-52156905 | None:intergenic | 20.0% |
| !! | TTGAAATGAATAATATAGCA+AGG | - | chr3_2:52157192-52157211 | None:intergenic | 20.0% |
| !! | TCAAAGATATCTACAAATAA+GGG | - | chr3_2:52157700-52157719 | None:intergenic | 20.0% |
| !! | ATCAAAGATATCTACAAATA+AGG | - | chr3_2:52157701-52157720 | None:intergenic | 20.0% |
| !! | ATTGAAATAGAAAATGAGAT+TGG | - | chr3_2:52157729-52157748 | None:intergenic | 20.0% |
| !! | AGATAATAAACTTCAACAAA+AGG | - | chr3_2:52157995-52158014 | None:intergenic | 20.0% |
| !! | AATTACTAAAACACACATTT+AGG | - | chr3_2:52158157-52158176 | None:intergenic | 20.0% |
| !!! | GGTAATTTTTATCTACAAAT+AGG | + | chr3_2:52158203-52158222 | Msa0410530:intron | 20.0% |
| !! | TACTGTTAATATATCCAAAA+GGG | + | chr3_2:52158501-52158520 | Msa0410530:intron | 20.0% |
| !!! | TTTATTAAAATGTACCCTTT+TGG | - | chr3_2:52158518-52158537 | None:intergenic | 20.0% |
| !! | GATAGTATATAGTAAAATGT+TGG | - | chr3_2:52158546-52158565 | None:intergenic | 20.0% |
| !!! | ATTTGTCATTGAAACTATTT+TGG | + | chr3_2:52158847-52158866 | Msa0410530:three_prime_UTR | 20.0% |
| !!! | TTTGTCATTGAAACTATTTT+GGG | + | chr3_2:52158848-52158867 | Msa0410530:three_prime_UTR | 20.0% |
| !! | AAACTTATGACATGTTTAAT+AGG | + | chr3_2:52158918-52158937 | Msa0410530:three_prime_UTR | 20.0% |
| !!! | TGAAAGTCTAATTTTAGAGT+TGG | + | chr3_2:52156052-52156071 | Msa0410530:intron | 25.0% |
| !!! | TGAAAGTCTAATTTTAGAGT+TGG | + | chr3_2:52156052-52156071 | Msa0410530:intron | 25.0% |
| ! | CACAAACTAAATACTTCTTT+AGG | - | chr3_2:52156256-52156275 | None:intergenic | 25.0% |
| !!! | CTAAAGAAGTATTTAGTTTG+TGG | + | chr3_2:52156254-52156273 | Msa0410530:intron | 25.0% |
| ! | AGTTTGTGGAATCATATTAA+AGG | + | chr3_2:52156268-52156287 | Msa0410530:intron | 25.0% |
| ! | TGGAATCATATTAAAGGAAT+TGG | + | chr3_2:52156274-52156293 | Msa0410530:intron | 25.0% |
| !!! | TAAAGAATATGGTGTTTTGA+AGG | + | chr3_2:52156313-52156332 | Msa0410530:intron | 25.0% |
| !!! | TTTTGAAGGATTATGTTTTG+TGG | + | chr3_2:52156327-52156346 | Msa0410530:intron | 25.0% |
| !! | TTTTGTCTATATACTTGGTA+TGG | + | chr3_2:52156359-52156378 | Msa0410530:intron | 25.0% |
| !!! | AAAAGTACTTATATAGGATG+AGG | + | chr3_2:52156432-52156451 | Msa0410530:intron | 25.0% |
| ! | CTTAAGAAGAATTATCTACT+TGG | + | chr3_2:52156547-52156566 | Msa0410530:intron | 25.0% |
| !! | TTGTTTATGTTTAGCCATTT+TGG | + | chr3_2:52157152-52157171 | Msa0410530:intron | 25.0% |
| ! | ATGAATAATATAGCAAGGTA+AGG | - | chr3_2:52157187-52157206 | None:intergenic | 25.0% |
| ! | ATTTCAATCTAAAGAAACCA+TGG | + | chr3_2:52157205-52157224 | Msa0410530:intron | 25.0% |
| !! | TTTGAAATAGATGATGTCAT+AGG | + | chr3_2:52157290-52157309 | Msa0410530:intron | 25.0% |
| !! | CTCTTTCAGATTTGATAATT+TGG | + | chr3_2:52157327-52157346 | Msa0410530:intron | 25.0% |
| ! | TGATAATTTGGTCATTTACA+TGG | + | chr3_2:52157339-52157358 | Msa0410530:intron | 25.0% |
| !!! | AAGCTTTTTGAAACCTTTTT+CGG | - | chr3_2:52157786-52157805 | None:intergenic | 25.0% |
| ! | CATTAATTTCATTACTCTCA+TGG | + | chr3_2:52157812-52157831 | Msa0410530:intron | 25.0% |
| ! | AAAAATAAATGCATGGAAGA+AGG | - | chr3_2:52157963-52157982 | None:intergenic | 25.0% |
| ! | CATTCAATCAAACATGTAAA+AGG | - | chr3_2:52158030-52158049 | None:intergenic | 25.0% |
| ! | TGTTTGATTGAATGTTTGAT+TGG | + | chr3_2:52158036-52158055 | Msa0410530:intron | 25.0% |
| !! | ATTTTCTTTGTACAACAGTT+TGG | - | chr3_2:52158366-52158385 | None:intergenic | 25.0% |
| ! | AAACTGTTGTACAAAGAAAA+TGG | + | chr3_2:52158365-52158384 | Msa0410530:CDS | 25.0% |
| ! | AATATTAAGAAAGGGAAACA+AGG | + | chr3_2:52158412-52158431 | Msa0410530:intron | 25.0% |
| ! | CTACTGTTAATATATCCAAA+AGG | + | chr3_2:52158500-52158519 | Msa0410530:intron | 25.0% |
| !!! | TTTTTAGGCTTTTTCTGATT+TGG | - | chr3_2:52158641-52158660 | None:intergenic | 25.0% |
| ! | AATCAGAAAAAGCCTAAAAA+AGG | + | chr3_2:52158641-52158660 | Msa0410530:CDS | 25.0% |
| !! | AAATAAAAGCACAATCTCAT+AGG | - | chr3_2:52158813-52158832 | None:intergenic | 25.0% |
| !!! | ATGAGATTGTGCTTTTATTT+TGG | + | chr3_2:52158813-52158832 | Msa0410530:three_prime_UTR | 25.0% |
| CAACCTTATGTTGCAAAAAA+TGG | + | chr3_2:52155875-52155894 | Msa0410530:CDS | 30.0% | |
| !!! | ACACCATTTTTTGCAACATA+AGG | - | chr3_2:52155881-52155900 | None:intergenic | 30.0% |
| ! | TGAAACATGCTGATTATCAA+TGG | + | chr3_2:52155900-52155919 | Msa0410530:CDS | 30.0% |
| GTCATGCATGTAATTAAACT+GGG | - | chr3_2:52155971-52155990 | None:intergenic | 30.0% | |
| AGTCATGCATGTAATTAAAC+TGG | - | chr3_2:52155972-52155991 | None:intergenic | 30.0% | |
| CCTAATTGAACTCATTCATT+GGG | + | chr3_2:52156213-52156232 | Msa0410530:intron | 30.0% | |
| !!! | GGATGAATCTTTTTTTGTTG+CGG | + | chr3_2:52156453-52156472 | Msa0410530:intron | 30.0% |
| GAATACACAAGAAGTTTATG+AGG | + | chr3_2:52156740-52156759 | Msa0410530:intron | 30.0% | |
| GTCTTCACTTATTCATAACA+AGG | + | chr3_2:52156795-52156814 | Msa0410530:intron | 30.0% | |
| AGTTATGATGCTTCACAATA+AGG | - | chr3_2:52157051-52157070 | None:intergenic | 30.0% | |
| !! | CTTTTTGTTTGTTTAGCACT+AGG | + | chr3_2:52157073-52157092 | Msa0410530:intron | 30.0% |
| GGCTAAACATAAACAACAAA+AGG | - | chr3_2:52157148-52157167 | None:intergenic | 30.0% | |
| ! | ATGAGTATAGTGTAGTGTTT+TGG | + | chr3_2:52157388-52157407 | Msa0410530:intron | 30.0% |
| ATATCTACAAATAAGGGAGA+AGG | - | chr3_2:52157694-52157713 | None:intergenic | 30.0% | |
| GAAATAGAAAATGAGATTGG+TGG | - | chr3_2:52157726-52157745 | None:intergenic | 30.0% | |
| TAATTTCATTACTCTCATGG+TGG | + | chr3_2:52157815-52157834 | Msa0410530:intron | 30.0% | |
| TTAGGCATGAAGAATGTAAT+AGG | - | chr3_2:52158139-52158158 | None:intergenic | 30.0% | |
| TTAACAGTAGTTTCTTGAAG+TGG | - | chr3_2:52158490-52158509 | None:intergenic | 30.0% | |
| ATTTAATTAAGGGAGACCTA+AGG | + | chr3_2:52158583-52158602 | Msa0410530:intron | 30.0% | |
| ATCAAAGTCTGTCAAATCAA+AGG | + | chr3_2:52158613-52158632 | Msa0410530:CDS | 30.0% | |
| TCAAAGTCTGTCAAATCAAA+GGG | + | chr3_2:52158614-52158633 | Msa0410530:CDS | 30.0% | |
| !!! | GAAACTATTTTGGGATTGTA+AGG | + | chr3_2:52158857-52158876 | Msa0410530:three_prime_UTR | 30.0% |
| GTCGTATTAGTACTCAATTA+GGG | + | chr3_2:52158890-52158909 | Msa0410530:three_prime_UTR | 30.0% | |
| TCAATCTCCACAATCAAAAT+CGG | - | chr3_2:52158992-52159011 | None:intergenic | 30.0% | |
| TGAGATGAAATCCAAACAGA+GGG | - | chr3_2:52155952-52155971 | None:intergenic | 35.0% | |
| ATCCAAACAGAGGGTAAATT+AGG | - | chr3_2:52156078-52156097 | None:intergenic | 35.0% | |
| GCCTAATTGAACTCATTCAT+TGG | + | chr3_2:52156212-52156231 | Msa0410530:intron | 35.0% | |
| CCCAATGAATGAGTTCAATT+AGG | - | chr3_2:52156216-52156235 | None:intergenic | 35.0% | |
| TTTGCCTTTCTCACCTTAAT+AGG | + | chr3_2:52156921-52156940 | Msa0410530:intron | 35.0% | |
| GTTAGTTCGAAGTGACAAAT+CGG | - | chr3_2:52156970-52156989 | None:intergenic | 35.0% | |
| TAAGGCAATATGACGTACAT+TGG | - | chr3_2:52157033-52157052 | None:intergenic | 35.0% | |
| ATTGAAGTAGCAGTGGAAAA+AGG | - | chr3_2:52157115-52157134 | None:intergenic | 35.0% | |
| !! | TTCCACTGCTACTTCAATTT+TGG | + | chr3_2:52157117-52157136 | Msa0410530:intron | 35.0% |
| !! | TCCACTGCTACTTCAATTTT+GGG | + | chr3_2:52157118-52157137 | Msa0410530:intron | 35.0% |
| AAAGAAACCATGGCTTAACA+TGG | + | chr3_2:52157215-52157234 | Msa0410530:intron | 35.0% | |
| AAGAAAACCATGTTAAGCCA+TGG | - | chr3_2:52157225-52157244 | None:intergenic | 35.0% | |
| !!! | AGTGTAGTGTTTTGGTTGAT+TGG | + | chr3_2:52157396-52157415 | Msa0410530:intron | 35.0% |
| ! | TTGACTGATTCAAGTTCTGT+TGG | + | chr3_2:52157421-52157440 | Msa0410530:intron | 35.0% |
| CTTGAATCAGTCAACATAAC+TGG | - | chr3_2:52157469-52157488 | None:intergenic | 35.0% | |
| GATCCGTTGACAATATTTCT+TGG | + | chr3_2:52157551-52157570 | Msa0410530:intron | 35.0% | |
| CGTCCAAGAAATATTGTCAA+CGG | - | chr3_2:52157557-52157576 | None:intergenic | 35.0% | |
| ACATCAAAACATCGACACAA+CGG | - | chr3_2:52157651-52157670 | None:intergenic | 35.0% | |
| GAAATCACCACCACATAAAA+CGG | - | chr3_2:52157864-52157883 | None:intergenic | 35.0% | |
| CATGAAGAATGTAATAGGAG+TGG | - | chr3_2:52158134-52158153 | None:intergenic | 35.0% | |
| ATTCACATGTCGAAAAGAAC+AGG | + | chr3_2:52158182-52158201 | Msa0410530:intron | 35.0% | |
| AAATAGGTGTAATGTGTGCT+TGG | + | chr3_2:52158219-52158238 | Msa0410530:intron | 35.0% | |
| TGTAATGTGTGCTTGGAATA+TGG | + | chr3_2:52158226-52158245 | Msa0410530:intron | 35.0% | |
| GGGAAAAAAAGAAGTTGCTA+AGG | + | chr3_2:52158273-52158292 | Msa0410530:CDS | 35.0% | |
| ! | ACAACAACTTCAGTAGGTTT+TGG | - | chr3_2:52158460-52158479 | None:intergenic | 35.0% |
| TATGTCAAACTCCTCTTAAC+AGG | - | chr3_2:52158778-52158797 | None:intergenic | 35.0% | |
| GGTCGTATTAGTACTCAATT+AGG | + | chr3_2:52158889-52158908 | Msa0410530:three_prime_UTR | 35.0% | |
| !!! | TTAGACACCGATTTTGATTG+TGG | + | chr3_2:52158982-52159001 | Msa0410530:three_prime_UTR | 35.0% |
| AGCAATTGACCAAGTTGTTC+AGG | + | chr3_2:52155825-52155844 | Msa0410530:CDS | 40.0% | |
| GCAATTGACCAAGTTGTTCA+GGG | + | chr3_2:52155826-52155845 | Msa0410530:CDS | 40.0% | |
| CGATTCATTTACCCTCTGTT+TGG | + | chr3_2:52155938-52155957 | Msa0410530:intron | 40.0% | |
| CTGAGATGAAATCCAAACAG+AGG | - | chr3_2:52155953-52155972 | None:intergenic | 40.0% | |
| ! | TGGGTTGAAATCCAAACAGA+GGG | - | chr3_2:52156087-52156106 | None:intergenic | 40.0% |
| ATCTCAAGACTGGAAAAGCT+TGG | - | chr3_2:52156522-52156541 | None:intergenic | 40.0% | |
| ! | CTTTTCCAGTCTTGAGATCT+TGG | + | chr3_2:52156524-52156543 | Msa0410530:intron | 40.0% |
| TTAAGCCAAGATCTCAAGAC+TGG | - | chr3_2:52156532-52156551 | None:intergenic | 40.0% | |
| ACCTTAATAGGCCTGATCAA+TGG | + | chr3_2:52156933-52156952 | Msa0410530:intron | 40.0% | |
| ACCATTGATCAGGCCTATTA+AGG | - | chr3_2:52156937-52156956 | None:intergenic | 40.0% | |
| TTAATAGGCCTGATCAATGG+TGG | + | chr3_2:52156936-52156955 | Msa0410530:intron | 40.0% | |
| TGGTTGTATCGAATTCGATG+TGG | - | chr3_2:52157013-52157032 | None:intergenic | 40.0% | |
| ACCCAAAATTGAAGTAGCAG+TGG | - | chr3_2:52157122-52157141 | None:intergenic | 40.0% | |
| TAAGGTAGCAGACACCAAAA+TGG | - | chr3_2:52157169-52157188 | None:intergenic | 40.0% | |
| TATTGTCAACGGATCTCCTT+CGG | - | chr3_2:52157546-52157565 | None:intergenic | 40.0% | |
| TTTCTTGGACGTTGAGTTAG+AGG | + | chr3_2:52157566-52157585 | Msa0410530:intron | 40.0% | |
| TTCTTGGACGTTGAGTTAGA+GGG | + | chr3_2:52157567-52157586 | Msa0410530:intron | 40.0% | |
| CAAATAAGGGAGAAGGCAAA+GGG | - | chr3_2:52157687-52157706 | None:intergenic | 40.0% | |
| ACAAATAAGGGAGAAGGCAA+AGG | - | chr3_2:52157688-52157707 | None:intergenic | 40.0% | |
| TTGATTCTCCCATCTATGCT+AGG | + | chr3_2:52157757-52157776 | Msa0410530:intron | 40.0% | |
| TCATGGTGGTTGTCTGAAAA+AGG | + | chr3_2:52157829-52157848 | Msa0410530:intron | 40.0% | |
| !! | ATTTCCTTTAGCGGATTGAG+TGG | + | chr3_2:52157879-52157898 | Msa0410530:intron | 40.0% |
| TTGAGTGGCAGTTTATGTGA+TGG | + | chr3_2:52157894-52157913 | Msa0410530:intron | 40.0% | |
| TGGAATATGGTCACAATGCT+AGG | + | chr3_2:52158239-52158258 | Msa0410530:intron | 40.0% | |
| TCACAATGCTAGGACATGTA+AGG | + | chr3_2:52158249-52158268 | Msa0410530:intron | 40.0% | |
| AATGCTAGGACATGTAAGGA+GGG | + | chr3_2:52158253-52158272 | Msa0410530:intron | 40.0% | |
| TGATTGTCAGGTGCAATTTC+TGG | - | chr3_2:52158301-52158320 | None:intergenic | 40.0% | |
| AAGAAAGGGAAACAAGGTGA+TGG | + | chr3_2:52158418-52158437 | Msa0410530:intron | 40.0% | |
| GCTTCAACAACAACTTCAGT+AGG | - | chr3_2:52158466-52158485 | None:intergenic | 40.0% | |
| GATTTGACAGACTTTGATGC+AGG | - | chr3_2:52158611-52158630 | None:intergenic | 40.0% | |
| !!! | GCATCAGCAGATCCTTTTTT+AGG | - | chr3_2:52158656-52158675 | None:intergenic | 40.0% |
| ! | ACTGATGTTGCTGTTGCTAA+CGG | + | chr3_2:52158683-52158702 | Msa0410530:CDS | 40.0% |
| GGCCTAATTTACCCTCTGTT+TGG | + | chr3_2:52156073-52156092 | Msa0410530:intron | 45.0% | |
| ! | CTGGGTTGAAATCCAAACAG+AGG | - | chr3_2:52156088-52156107 | None:intergenic | 45.0% |
| GAGTCCATGCAGCAGAATTT+CGG | + | chr3_2:52156708-52156727 | Msa0410530:intron | 45.0% | |
| CAGGCCTATTAAGGTGAGAA+AGG | - | chr3_2:52156928-52156947 | None:intergenic | 45.0% | |
| GGTAAGTGCGCAGTTTCAAA+AGG | - | chr3_2:52156992-52157011 | None:intergenic | 45.0% | |
| TCGTTATGTTGAGACGACAG+CGG | + | chr3_2:52157502-52157521 | Msa0410530:intron | 45.0% | |
| TGAGTTAGAGGGAGCAAAGA+CGG | + | chr3_2:52157578-52157597 | Msa0410530:intron | 45.0% | |
| TTCGGCAACCTAGCATAGAT+GGG | - | chr3_2:52157768-52157787 | None:intergenic | 45.0% | |
| TTTCGGCAACCTAGCATAGA+TGG | - | chr3_2:52157769-52157788 | None:intergenic | 45.0% | |
| CTATGCTAGGTTGCCGAAAA+AGG | + | chr3_2:52157770-52157789 | Msa0410530:intron | 45.0% | |
| ! | GTGGTGGTGATTTCCTTTAG+CGG | + | chr3_2:52157870-52157889 | Msa0410530:intron | 45.0% |
| GGAAACACTCACTCTAGATC+AGG | - | chr3_2:52157942-52157961 | None:intergenic | 45.0% | |
| CAATGCTAGGACATGTAAGG+AGG | + | chr3_2:52158252-52158271 | Msa0410530:intron | 45.0% | |
| GCACCTGACAATCAGAATAG+CGG | + | chr3_2:52158307-52158326 | Msa0410530:CDS | 45.0% | |
| TGTCCGCTATTCTGATTGTC+AGG | - | chr3_2:52158313-52158332 | None:intergenic | 45.0% | |
| GACTTTGATGCAGGTTCCTT+AGG | - | chr3_2:52158602-52158621 | None:intergenic | 45.0% | |
| GTTGCAGGCACTTCAACATA+AGG | - | chr3_2:52158725-52158744 | None:intergenic | 45.0% | |
| ! | GGGATTGTAAGGCTCTTTTG+TGG | + | chr3_2:52158868-52158887 | Msa0410530:three_prime_UTR | 45.0% |
| TAGACGCTCATGCGAGTTTC+AGG | + | chr3_2:52155801-52155820 | Msa0410530:CDS | 50.0% | |
| CATGCCGAAATTCTGCTGCA+TGG | - | chr3_2:52156715-52156734 | None:intergenic | 50.0% | |
| CATGCAGCAGAATTTCGGCA+TGG | + | chr3_2:52156713-52156732 | Msa0410530:intron | 50.0% | |
| AGCAGAATTTCGGCATGGCA+AGG | + | chr3_2:52156718-52156737 | Msa0410530:intron | 50.0% | |
| ACTCGTCTCCACCATTGATC+AGG | - | chr3_2:52156947-52156966 | None:intergenic | 50.0% | |
| GCATAACGAAGCAGAACCGA+AGG | + | chr3_2:52157527-52157546 | Msa0410530:intron | 50.0% | |
| GTCGAGATCATGACCACCTT+CGG | - | chr3_2:52157607-52157626 | None:intergenic | 50.0% | |
| GGTTGTCTGAAAAAGGCCAG+CGG | + | chr3_2:52157836-52157855 | Msa0410530:intron | 50.0% | |
| ACTGCCACTCAATCCGCTAA+AGG | - | chr3_2:52157886-52157905 | None:intergenic | 50.0% | |
| GCTGTAGAGTTGGCAACACA+AGG | + | chr3_2:52158337-52158356 | Msa0410530:CDS | 50.0% | |
| TCCACTTCAGTTGCAGTTGC+AGG | - | chr3_2:52158740-52158759 | None:intergenic | 50.0% | |
| GCTGATGTGCTCCTGTTAAG+AGG | + | chr3_2:52158764-52158783 | Msa0410530:CDS | 50.0% | |
| ! | GCATGCTTTTGCAACCTCCT+TGG | + | chr3_2:52158940-52158959 | Msa0410530:three_prime_UTR | 50.0% |
| TTTACAGCACCACAGCACCA+AGG | - | chr3_2:52158960-52158979 | None:intergenic | 50.0% | |
| GAGCGCTTCCCTGAACAACT+TGG | - | chr3_2:52155837-52155856 | None:intergenic | 55.0% | |
| GTTAGAGGGAGCAAAGACGG+TGG | + | chr3_2:52157581-52157600 | Msa0410530:intron | 55.0% | |
| ACCACATAAAACGGCACCGC+TGG | - | chr3_2:52157855-52157874 | None:intergenic | 55.0% | |
| !!! | AGCGGTGCCGTTTTATGTGG+TGG | + | chr3_2:52157854-52157873 | Msa0410530:intron | 55.0% |
| CGGACAAGCTGCTGTAGAGT+TGG | + | chr3_2:52158327-52158346 | Msa0410530:CDS | 55.0% | |
| GCCTGCAACTGCAACTGAAG+TGG | + | chr3_2:52158736-52158755 | Msa0410530:CDS | 55.0% | |
| !! | TTGCAACCTCCTTGGTGCTG+TGG | + | chr3_2:52158948-52158967 | Msa0410530:three_prime_UTR | 55.0% |
| !!! | GCCAGCGGTGCCGTTTTATG+TGG | + | chr3_2:52157851-52157870 | Msa0410530:intron | 60.0% |
| ACAGCACCACAGCACCAAGG+AGG | - | chr3_2:52158957-52158976 | None:intergenic | 60.0% | |
| GGAGCAAAGACGGTGGCCGA+AGG | + | chr3_2:52157588-52157607 | Msa0410530:intron | 65.0% | |
| GCAAAGACGGTGGCCGAAGG+TGG | + | chr3_2:52157591-52157610 | Msa0410530:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 52155785 | 52159028 | 52155785 | ID=Msa0410530;Name=Msa0410530 |
| chr3_2 | mRNA | 52155785 | 52159028 | 52155785 | ID=Msa0410530-mRNA-1;Parent=Msa0410530;Name=Msa0410530-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0.5|0.5|1|1|4|235|160 |
| chr3_2 | exon | 52155785 | 52155921 | 52155785 | ID=Msa0410530-mRNA-1:exon:10294;Parent=Msa0410530-mRNA-1 |
| chr3_2 | exon | 52158261 | 52158386 | 52158261 | ID=Msa0410530-mRNA-1:exon:10295;Parent=Msa0410530-mRNA-1 |
| chr3_2 | exon | 52158485 | 52158504 | 52158485 | ID=Msa0410530-mRNA-1:exon:10296;Parent=Msa0410530-mRNA-1 |
| chr3_2 | exon | 52158594 | 52159028 | 52158594 | ID=Msa0410530-mRNA-1:exon:10297;Parent=Msa0410530-mRNA-1 |
| chr3_2 | CDS | 52155785 | 52155921 | 52155785 | ID=Msa0410530-mRNA-1:cds;Parent=Msa0410530-mRNA-1 |
| chr3_2 | CDS | 52158261 | 52158386 | 52158261 | ID=Msa0410530-mRNA-1:cds;Parent=Msa0410530-mRNA-1 |
| chr3_2 | CDS | 52158485 | 52158504 | 52158485 | ID=Msa0410530-mRNA-1:cds;Parent=Msa0410530-mRNA-1 |
| chr3_2 | CDS | 52158594 | 52158793 | 52158594 | ID=Msa0410530-mRNA-1:cds;Parent=Msa0410530-mRNA-1 |
| chr3_2 | three_prime_UTR | 52158794 | 52159028 | 52158794 | ID=Msa0410530-mRNA-1:three_prime_utr;Parent=Msa0410530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
