Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411330 | RHN67425.1 | 63.043 | 92 | 20 | 2 | 80 | 157 | 4 | 95 | 2.65e-17 | 85.1 |
| Msa0411330 | RHN67425.1 | 64.130 | 92 | 22 | 2 | 33 | 113 | 4 | 95 | 1.84e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411330 | A0A396ITY4 | 63.043 | 92 | 20 | 2 | 80 | 157 | 4 | 95 | 1.26e-17 | 85.1 |
| Msa0411330 | A0A396ITY4 | 64.130 | 92 | 22 | 2 | 33 | 113 | 4 | 95 | 8.79e-18 | 85.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0411330 | Msa0455810 | 0.950635 | 1.094563e-108 | -8.615850e-47 |
| Msa0411330 | Msa1387340 | 0.852692 | 3.906470e-61 | -8.615850e-47 |
| Msa0411330 | Msa1387350 | 0.962850 | 2.265043e-121 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411330 | MtrunA17_Chr3g0102591 | 64.130 | 92 | 22 | 2 | 33 | 113 | 4 | 95 | 1.69e-21 | 85.5 |
| Msa0411330 | MtrunA17_Chr3g0102591 | 63.043 | 92 | 20 | 2 | 80 | 157 | 4 | 95 | 2.43e-21 | 85.1 |
| Msa0411330 | MtrunA17_Chr3g0103921 | 51.852 | 108 | 39 | 4 | 65 | 166 | 36 | 136 | 5.04e-21 | 85.1 |
| Msa0411330 | MtrunA17_Chr3g0103921 | 48.980 | 98 | 41 | 3 | 18 | 113 | 36 | 126 | 4.24e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | 3_2:+53573197 | Msa0411330:CDS |
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | 3_2:+53573329 | Msa0411330:CDS |
| CAAGATCCTGCTATGGTTAA+TGG | 0.249869 | 3_2:+53573056 | Msa0411330:CDS |
| CCATGGCAGGATCTTGTTGC+TGG | 0.326139 | 3_2:-53573190 | None:intergenic |
| TAATAATATGCTTCAGACCT+TGG | 0.421796 | 3_2:-53572950 | None:intergenic |
| CACTGCCGCTGCTCAAGCAC+AGG | 0.423665 | 3_2:+53572511 | Msa0411330:CDS |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | 3_2:-53573137 | None:intergenic |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | 3_2:-53573278 | None:intergenic |
| CTGTGCTTGAGCAGCGGCAG+TGG | 0.442560 | 3_2:-53572510 | None:intergenic |
| AAAATTGCTTGAACAAGAAC+AGG | 0.450880 | 3_2:-53572996 | None:intergenic |
| GCAAAACAGCGAAAATTGCT+TGG | 0.458662 | 3_2:-53573148 | None:intergenic |
| CATGGTGGTGGTCAAGGCCA+AGG | 0.464746 | 3_2:+53572933 | Msa0411330:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | 3_2:+53573079 | Msa0411330:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | 3_2:+53573220 | Msa0411330:CDS |
| ACAAAACAGCGAAAATTGCT+TGG | 0.469717 | 3_2:-53573289 | None:intergenic |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | 3_2:-53573091 | None:intergenic |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | 3_2:-53573232 | None:intergenic |
| TTGGAAGCCCACGATGGATG+CGG | 0.505267 | 3_2:+53572484 | None:intergenic |
| CAAAACAGCGAAAATTGCTT+GGG | 0.509904 | 3_2:-53573147 | None:intergenic |
| CAAAACAGCGAAAATTGCTT+GGG | 0.524048 | 3_2:-53573288 | None:intergenic |
| CCTGCCATGGTTAATGGTGG+TGG | 0.534386 | 3_2:+53573335 | Msa0411330:CDS |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | 3_2:+53573074 | Msa0411330:CDS |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | 3_2:+53573215 | Msa0411330:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | 3_2:+53573068 | Msa0411330:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | 3_2:+53573209 | Msa0411330:CDS |
| CCACCACCATTAACCATAGC+AGG | 0.561187 | 3_2:-53573062 | None:intergenic |
| CCACCACCATTAACCATGGC+AGG | 0.564209 | 3_2:-53573335 | None:intergenic |
| CCACCACCATTAACCATGGC+AGG | 0.568848 | 3_2:-53573203 | None:intergenic |
| CCTGCTATGGTTAATGGTGG+TGG | 0.573689 | 3_2:+53573062 | Msa0411330:CDS |
| CCTGCCATGGTTAATGGTGG+TGG | 0.576171 | 3_2:+53573203 | Msa0411330:CDS |
| TCAGCAACAAGATCCTGCTA+TGG | 0.595166 | 3_2:+53573049 | Msa0411330:CDS |
| AAATCAACATGGGTTTGTGA+TGG | 0.600368 | 3_2:+53573361 | Msa0411330:CDS |
| TGCTCCACCACCATTAACCA+TGG | 0.622092 | 3_2:-53573339 | None:intergenic |
| GGTGGTGGAGCAAATCAACA+TGG | 0.627780 | 3_2:+53573350 | Msa0411330:CDS |
| TTGAACCTGTGCTTGAGCAG+CGG | 0.627913 | 3_2:-53572516 | None:intergenic |
| TCAGCAACAAGATCCTGCCA+TGG | 0.666632 | 3_2:+53573322 | Msa0411330:CDS |
| CCAGCAACAAGATCCTGCCA+TGG | 0.666762 | 3_2:+53573190 | Msa0411330:CDS |
| TTGACCACCACCATTAACCA+TGG | 0.670727 | 3_2:-53573207 | None:intergenic |
| GTGGTGGAGCAAATCAACAT+GGG | 0.698550 | 3_2:+53573351 | Msa0411330:CDS |
| GATCCTGCTATGGTTAATGG+TGG | 0.728334 | 3_2:+53573059 | Msa0411330:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | 3_2:+53573200 | Msa0411330:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | 3_2:+53573332 | Msa0411330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGGATTTTATGATTTAAGT+CGG | - | chr3_2:53572616-53572635 | None:intergenic | 20.0% |
| !!! | TACTTTTCTTTTGTCTTTTT+AGG | + | chr3_2:53572902-53572921 | Msa0411330:intron | 20.0% |
| !!! | TTGGATTTTATGATTTAAGT+CGG | - | chr3_2:53572616-53572635 | None:intergenic | 20.0% |
| !!! | TACTTTTCTTTTGTCTTTTT+AGG | + | chr3_2:53572902-53572921 | Msa0411330:intron | 20.0% |
| !! | TGGATTTTATGATTTAAGTC+GGG | - | chr3_2:53572615-53572634 | None:intergenic | 25.0% |
| !! | TCGATGTATTTTGCTTATTT+TGG | - | chr3_2:53572688-53572707 | None:intergenic | 25.0% |
| ! | TAAATCAAGGTTGTGAAAAT+CGG | - | chr3_2:53572835-53572854 | None:intergenic | 25.0% |
| !!! | GATATATTGACTCTAAATCA+AGG | - | chr3_2:53572848-53572867 | None:intergenic | 25.0% |
| ! | AGAGGGAAAAAAAATACAAT+GGG | - | chr3_2:53572871-53572890 | None:intergenic | 25.0% |
| ! | AAAGTAAGAATAGAAAGAGA+GGG | - | chr3_2:53572888-53572907 | None:intergenic | 25.0% |
| ! | AAAAGTAAGAATAGAAAGAG+AGG | - | chr3_2:53572889-53572908 | None:intergenic | 25.0% |
| !!! | TCTTTTTAGGAACTTTTTCA+TGG | + | chr3_2:53572915-53572934 | Msa0411330:intron | 25.0% |
| !! | TGGATTTTATGATTTAAGTC+GGG | - | chr3_2:53572615-53572634 | None:intergenic | 25.0% |
| !! | TCGATGTATTTTGCTTATTT+TGG | - | chr3_2:53572688-53572707 | None:intergenic | 25.0% |
| ! | TAAATCAAGGTTGTGAAAAT+CGG | - | chr3_2:53572835-53572854 | None:intergenic | 25.0% |
| !!! | GATATATTGACTCTAAATCA+AGG | - | chr3_2:53572848-53572867 | None:intergenic | 25.0% |
| ! | AGAGGGAAAAAAAATACAAT+GGG | - | chr3_2:53572871-53572890 | None:intergenic | 25.0% |
| ! | AAAGTAAGAATAGAAAGAGA+GGG | - | chr3_2:53572888-53572907 | None:intergenic | 25.0% |
| ! | AAAAGTAAGAATAGAAAGAG+AGG | - | chr3_2:53572889-53572908 | None:intergenic | 25.0% |
| !!! | TCTTTTTAGGAACTTTTTCA+TGG | + | chr3_2:53572915-53572934 | Msa0411330:intron | 25.0% |
| !!! | CTTATTTTGGAATTCCACTA+TGG | - | chr3_2:53572675-53572694 | None:intergenic | 30.0% |
| AAAATCGCAATCAAAATCGA+AGG | - | chr3_2:53572704-53572723 | None:intergenic | 30.0% | |
| GACTTTACTTCAAATCGAAA+GGG | - | chr3_2:53572812-53572831 | None:intergenic | 30.0% | |
| AAATCAAGGTTGTGAAAATC+GGG | - | chr3_2:53572834-53572853 | None:intergenic | 30.0% | |
| GAGGGAAAAAAAATACAATG+GGG | - | chr3_2:53572870-53572889 | None:intergenic | 30.0% | |
| GAGAGGGAAAAAAAATACAA+TGG | - | chr3_2:53572872-53572891 | None:intergenic | 30.0% | |
| !!! | TTTTAGGAACTTTTTCATGG+TGG | + | chr3_2:53572918-53572937 | Msa0411330:intron | 30.0% |
| TAATAATATGCTTCAGACCT+TGG | - | chr3_2:53572953-53572972 | None:intergenic | 30.0% | |
| AAAATTGCTTGAACAAGAAC+AGG | - | chr3_2:53572999-53573018 | None:intergenic | 30.0% | |
| !!! | CTTATTTTGGAATTCCACTA+TGG | - | chr3_2:53572675-53572694 | None:intergenic | 30.0% |
| AAAATCGCAATCAAAATCGA+AGG | - | chr3_2:53572704-53572723 | None:intergenic | 30.0% | |
| GACTTTACTTCAAATCGAAA+GGG | - | chr3_2:53572812-53572831 | None:intergenic | 30.0% | |
| AAATCAAGGTTGTGAAAATC+GGG | - | chr3_2:53572834-53572853 | None:intergenic | 30.0% | |
| GAGGGAAAAAAAATACAATG+GGG | - | chr3_2:53572870-53572889 | None:intergenic | 30.0% | |
| GAGAGGGAAAAAAAATACAA+TGG | - | chr3_2:53572872-53572891 | None:intergenic | 30.0% | |
| !!! | TTTTAGGAACTTTTTCATGG+TGG | + | chr3_2:53572918-53572937 | Msa0411330:intron | 30.0% |
| TAATAATATGCTTCAGACCT+TGG | - | chr3_2:53572953-53572972 | None:intergenic | 30.0% | |
| AAAATTGCTTGAACAAGAAC+AGG | - | chr3_2:53572999-53573018 | None:intergenic | 30.0% | |
| AATTGTTGAGCTTGAACTTG+AGG | - | chr3_2:53572545-53572564 | None:intergenic | 35.0% | |
| TCAAGTTCAAGCTCAACAAT+TGG | + | chr3_2:53572544-53572563 | Msa0411330:intron | 35.0% | |
| TGAAGAAAGTCGCAAAATCT+TGG | - | chr3_2:53572635-53572654 | None:intergenic | 35.0% | |
| GGACTTTACTTCAAATCGAA+AGG | - | chr3_2:53572813-53572832 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | chr3_2:53573094-53573113 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | chr3_2:53573150-53573169 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | chr3_2:53573094-53573113 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | chr3_2:53573150-53573169 | None:intergenic | 35.0% | |
| ACAAAACAGCGAAAATTGCT+TGG | - | chr3_2:53573292-53573311 | None:intergenic | 35.0% | |
| AAATCAACATGGGTTTGTGA+TGG | + | chr3_2:53573361-53573380 | Msa0411330:CDS | 35.0% | |
| AATTGTTGAGCTTGAACTTG+AGG | - | chr3_2:53572545-53572564 | None:intergenic | 35.0% | |
| TCAAGTTCAAGCTCAACAAT+TGG | + | chr3_2:53572544-53572563 | Msa0411330:intron | 35.0% | |
| TGAAGAAAGTCGCAAAATCT+TGG | - | chr3_2:53572635-53572654 | None:intergenic | 35.0% | |
| GGACTTTACTTCAAATCGAA+AGG | - | chr3_2:53572813-53572832 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | chr3_2:53573094-53573113 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | chr3_2:53573150-53573169 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | chr3_2:53573094-53573113 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | chr3_2:53573150-53573169 | None:intergenic | 35.0% | |
| ACAAAACAGCGAAAATTGCT+TGG | - | chr3_2:53573292-53573311 | None:intergenic | 35.0% | |
| AAATCAACATGGGTTTGTGA+TGG | + | chr3_2:53573361-53573380 | Msa0411330:CDS | 35.0% | |
| CTATGGATTTGAGTCCTTGA+AGG | - | chr3_2:53572658-53572677 | None:intergenic | 40.0% | |
| TCAAGGACTCAAATCCATAG+TGG | + | chr3_2:53572658-53572677 | Msa0411330:intron | 40.0% | |
| !!! | TAGGAACTTTTTCATGGTGG+TGG | + | chr3_2:53572921-53572940 | Msa0411330:intron | 40.0% |
| !! | TTTTAGCTGTTTTGCCTCCA+TGG | + | chr3_2:53573015-53573034 | Msa0411330:CDS | 40.0% |
| !!! | TGATTTTGCTGATTCCATGG+AGG | - | chr3_2:53573032-53573051 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGCTGATTCCA+TGG | - | chr3_2:53573035-53573054 | None:intergenic | 40.0% |
| CAAGATCCTGCTATGGTTAA+TGG | + | chr3_2:53573056-53573075 | Msa0411330:CDS | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | - | chr3_2:53573140-53573159 | None:intergenic | 40.0% | |
| GCAAAACAGCGAAAATTGCT+TGG | - | chr3_2:53573151-53573170 | None:intergenic | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | - | chr3_2:53573140-53573159 | None:intergenic | 40.0% | |
| !!! | GGATCTTGTTGCTGATTTTG+TGG | - | chr3_2:53573044-53573063 | None:intergenic | 40.0% |
| CTATGGATTTGAGTCCTTGA+AGG | - | chr3_2:53572658-53572677 | None:intergenic | 40.0% | |
| TCAAGGACTCAAATCCATAG+TGG | + | chr3_2:53572658-53572677 | Msa0411330:intron | 40.0% | |
| !!! | TAGGAACTTTTTCATGGTGG+TGG | + | chr3_2:53572921-53572940 | Msa0411330:intron | 40.0% |
| !! | TTTTAGCTGTTTTGCCTCCA+TGG | + | chr3_2:53573015-53573034 | Msa0411330:CDS | 40.0% |
| !!! | TGATTTTGCTGATTCCATGG+AGG | - | chr3_2:53573032-53573051 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGCTGATTCCA+TGG | - | chr3_2:53573035-53573054 | None:intergenic | 40.0% |
| CAAGATCCTGCTATGGTTAA+TGG | + | chr3_2:53573056-53573075 | Msa0411330:CDS | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | - | chr3_2:53573140-53573159 | None:intergenic | 40.0% | |
| GCAAAACAGCGAAAATTGCT+TGG | - | chr3_2:53573151-53573170 | None:intergenic | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | - | chr3_2:53573140-53573159 | None:intergenic | 40.0% | |
| !!! | GGATCTTGTTGCTGATTTTG+TGG | - | chr3_2:53573044-53573063 | None:intergenic | 40.0% |
| TGCGACTTTCTTCACCTTCA+AGG | + | chr3_2:53572641-53572660 | Msa0411330:intron | 45.0% | |
| ! | GATTGCGATTTTACGAGTCC+AGG | + | chr3_2:53572776-53572795 | Msa0411330:intron | 45.0% |
| CGAAAGGGAATAGCAAAACC+TGG | - | chr3_2:53572797-53572816 | None:intergenic | 45.0% | |
| !!! | CTTTTTCATGGTGGTGGTCA+AGG | + | chr3_2:53572927-53572946 | Msa0411330:CDS | 45.0% |
| TCAGCAACAAGATCCTGCTA+TGG | + | chr3_2:53573049-53573068 | Msa0411330:CDS | 45.0% | |
| GATCCTGCTATGGTTAATGG+TGG | + | chr3_2:53573059-53573078 | Msa0411330:CDS | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | chr3_2:53573068-53573087 | Msa0411330:CDS | 45.0% |
| !! | TTTTCGCTGTTTTGCCTCCA+TGG | + | chr3_2:53573156-53573175 | Msa0411330:CDS | 45.0% |
| !!! | GGATCTTGTTGCTGGTTTTG+CGG | - | chr3_2:53573185-53573204 | None:intergenic | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | + | chr3_2:53573197-53573216 | Msa0411330:CDS | 45.0% | |
| TTGACCACCACCATTAACCA+TGG | - | chr3_2:53573069-53573088 | None:intergenic | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | chr3_2:53573068-53573087 | Msa0411330:CDS | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | + | chr3_2:53573197-53573216 | Msa0411330:CDS | 45.0% | |
| ! | GTGGTGGAGCAAATCAACAT+GGG | + | chr3_2:53573351-53573370 | Msa0411330:CDS | 45.0% |
| TGCGACTTTCTTCACCTTCA+AGG | + | chr3_2:53572641-53572660 | Msa0411330:intron | 45.0% | |
| ! | GATTGCGATTTTACGAGTCC+AGG | + | chr3_2:53572776-53572795 | Msa0411330:intron | 45.0% |
| CGAAAGGGAATAGCAAAACC+TGG | - | chr3_2:53572797-53572816 | None:intergenic | 45.0% | |
| !!! | CTTTTTCATGGTGGTGGTCA+AGG | + | chr3_2:53572927-53572946 | Msa0411330:CDS | 45.0% |
| TCAGCAACAAGATCCTGCTA+TGG | + | chr3_2:53573049-53573068 | Msa0411330:CDS | 45.0% | |
| GATCCTGCTATGGTTAATGG+TGG | + | chr3_2:53573059-53573078 | Msa0411330:CDS | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | chr3_2:53573068-53573087 | Msa0411330:CDS | 45.0% |
| !! | TTTTCGCTGTTTTGCCTCCA+TGG | + | chr3_2:53573156-53573175 | Msa0411330:CDS | 45.0% |
| !!! | GGATCTTGTTGCTGGTTTTG+CGG | - | chr3_2:53573185-53573204 | None:intergenic | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | + | chr3_2:53573197-53573216 | Msa0411330:CDS | 45.0% | |
| TTGACCACCACCATTAACCA+TGG | - | chr3_2:53573069-53573088 | None:intergenic | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | chr3_2:53573068-53573087 | Msa0411330:CDS | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | + | chr3_2:53573197-53573216 | Msa0411330:CDS | 45.0% | |
| ! | GTGGTGGAGCAAATCAACAT+GGG | + | chr3_2:53573351-53573370 | Msa0411330:CDS | 45.0% |
| TTGAACCTGTGCTTGAGCAG+CGG | - | chr3_2:53572519-53572538 | None:intergenic | 50.0% | |
| CCACCACCATTAACCATAGC+AGG | - | chr3_2:53573065-53573084 | None:intergenic | 50.0% | |
| CCTGCTATGGTTAATGGTGG+TGG | + | chr3_2:53573062-53573081 | Msa0411330:CDS | 50.0% | |
| !! | TGGTTTTGCGGATACCATGG+AGG | - | chr3_2:53573173-53573192 | None:intergenic | 50.0% |
| !!! | TGCTGGTTTTGCGGATACCA+TGG | - | chr3_2:53573176-53573195 | None:intergenic | 50.0% |
| GATCCTGCCATGGTTAATGG+TGG | + | chr3_2:53573200-53573219 | Msa0411330:CDS | 50.0% | |
| TCAGCAACAAGATCCTGCCA+TGG | + | chr3_2:53573322-53573341 | Msa0411330:CDS | 50.0% | |
| GATCCTGCCATGGTTAATGG+TGG | + | chr3_2:53573200-53573219 | Msa0411330:CDS | 50.0% | |
| TGCTCCACCACCATTAACCA+TGG | - | chr3_2:53573342-53573361 | None:intergenic | 50.0% | |
| !! | GGTGGTGGAGCAAATCAACA+TGG | + | chr3_2:53573350-53573369 | Msa0411330:CDS | 50.0% |
| TTGAACCTGTGCTTGAGCAG+CGG | - | chr3_2:53572519-53572538 | None:intergenic | 50.0% | |
| CCACCACCATTAACCATAGC+AGG | - | chr3_2:53573065-53573084 | None:intergenic | 50.0% | |
| CCTGCTATGGTTAATGGTGG+TGG | + | chr3_2:53573062-53573081 | Msa0411330:CDS | 50.0% | |
| !! | TGGTTTTGCGGATACCATGG+AGG | - | chr3_2:53573173-53573192 | None:intergenic | 50.0% |
| !!! | TGCTGGTTTTGCGGATACCA+TGG | - | chr3_2:53573176-53573195 | None:intergenic | 50.0% |
| GATCCTGCCATGGTTAATGG+TGG | + | chr3_2:53573200-53573219 | Msa0411330:CDS | 50.0% | |
| TCAGCAACAAGATCCTGCCA+TGG | + | chr3_2:53573322-53573341 | Msa0411330:CDS | 50.0% | |
| GATCCTGCCATGGTTAATGG+TGG | + | chr3_2:53573200-53573219 | Msa0411330:CDS | 50.0% | |
| TGCTCCACCACCATTAACCA+TGG | - | chr3_2:53573342-53573361 | None:intergenic | 50.0% | |
| !! | GGTGGTGGAGCAAATCAACA+TGG | + | chr3_2:53573350-53573369 | Msa0411330:CDS | 50.0% |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | chr3_2:53573074-53573093 | Msa0411330:CDS | 55.0% |
| CCATGGCAGGATCTTGTTGC+TGG | - | chr3_2:53573193-53573212 | None:intergenic | 55.0% | |
| CCAGCAACAAGATCCTGCCA+TGG | + | chr3_2:53573190-53573209 | Msa0411330:CDS | 55.0% | |
| CCACCACCATTAACCATGGC+AGG | - | chr3_2:53573206-53573225 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | chr3_2:53573203-53573222 | Msa0411330:CDS | 55.0% | |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | chr3_2:53573074-53573093 | Msa0411330:CDS | 55.0% |
| CCACCACCATTAACCATGGC+AGG | - | chr3_2:53573206-53573225 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | chr3_2:53573203-53573222 | Msa0411330:CDS | 55.0% | |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | chr3_2:53573074-53573093 | Msa0411330:CDS | 55.0% |
| CCATGGCAGGATCTTGTTGC+TGG | - | chr3_2:53573193-53573212 | None:intergenic | 55.0% | |
| CCAGCAACAAGATCCTGCCA+TGG | + | chr3_2:53573190-53573209 | Msa0411330:CDS | 55.0% | |
| CCACCACCATTAACCATGGC+AGG | - | chr3_2:53573206-53573225 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | chr3_2:53573203-53573222 | Msa0411330:CDS | 55.0% | |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | chr3_2:53573074-53573093 | Msa0411330:CDS | 55.0% |
| CCACCACCATTAACCATGGC+AGG | - | chr3_2:53573206-53573225 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | chr3_2:53573203-53573222 | Msa0411330:CDS | 55.0% | |
| !! | CATGGTGGTGGTCAAGGCCA+AGG | + | chr3_2:53572933-53572952 | Msa0411330:CDS | 60.0% |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | chr3_2:53572938-53572957 | Msa0411330:CDS | 60.0% | |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | chr3_2:53572938-53572957 | Msa0411330:CDS | 60.0% | |
| !! | CATGGTGGTGGTCAAGGCCA+AGG | + | chr3_2:53572933-53572952 | Msa0411330:CDS | 60.0% |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | chr3_2:53572938-53572957 | Msa0411330:CDS | 60.0% | |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | chr3_2:53572938-53572957 | Msa0411330:CDS | 60.0% | |
| CTGTGCTTGAGCAGCGGCAG+TGG | - | chr3_2:53572513-53572532 | None:intergenic | 65.0% | |
| CACTGCCGCTGCTCAAGCAC+AGG | + | chr3_2:53572511-53572530 | Msa0411330:CDS | 65.0% | |
| CTGTGCTTGAGCAGCGGCAG+TGG | - | chr3_2:53572513-53572532 | None:intergenic | 65.0% | |
| CACTGCCGCTGCTCAAGCAC+AGG | + | chr3_2:53572511-53572530 | Msa0411330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 53572497 | 53573394 | 53572497 | ID=Msa0411330;Name=Msa0411330 |
| chr3_2 | mRNA | 53572497 | 53573394 | 53572497 | ID=Msa0411330-mRNA-1;Parent=Msa0411330;Name=Msa0411330-mRNA-1;_AED=0.13;_eAED=0.16;_QI=0|0|0|0.5|1|1|2|0|168 |
| chr3_2 | exon | 53572497 | 53572532 | 53572497 | ID=Msa0411330-mRNA-1:exon:10702;Parent=Msa0411330-mRNA-1 |
| chr3_2 | exon | 53572924 | 53573394 | 53572924 | ID=Msa0411330-mRNA-1:exon:10703;Parent=Msa0411330-mRNA-1 |
| chr3_2 | CDS | 53572497 | 53572532 | 53572497 | ID=Msa0411330-mRNA-1:cds;Parent=Msa0411330-mRNA-1 |
| chr3_2 | CDS | 53572924 | 53573394 | 53572924 | ID=Msa0411330-mRNA-1:cds;Parent=Msa0411330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
