Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387350 | RHN67425.1 | 63.043 | 92 | 20 | 2 | 80 | 157 | 4 | 95 | 2.65e-17 | 85.1 |
| Msa1387350 | RHN67425.1 | 64.130 | 92 | 22 | 2 | 33 | 113 | 4 | 95 | 1.84e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387350 | A0A396ITY4 | 63.043 | 92 | 20 | 2 | 80 | 157 | 4 | 95 | 1.26e-17 | 85.1 |
| Msa1387350 | A0A396ITY4 | 64.130 | 92 | 22 | 2 | 33 | 113 | 4 | 95 | 8.79e-18 | 85.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1387280 | Msa1387350 | 0.819678 | 1.023756e-52 | -8.615850e-47 |
| Msa1387340 | Msa1387350 | 0.888158 | 7.567038e-73 | -8.615850e-47 |
| Msa0411330 | Msa1387350 | 0.962850 | 2.265043e-121 | -8.615850e-47 |
| Msa0455810 | Msa1387350 | 0.937884 | 1.674446e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387350 | MtrunA17_Chr3g0102591 | 64.130 | 92 | 22 | 2 | 33 | 113 | 4 | 95 | 1.69e-21 | 85.5 |
| Msa1387350 | MtrunA17_Chr3g0102591 | 63.043 | 92 | 20 | 2 | 80 | 157 | 4 | 95 | 2.43e-21 | 85.1 |
| Msa1387350 | MtrunA17_Chr3g0103921 | 51.852 | 108 | 39 | 4 | 65 | 166 | 36 | 136 | 5.04e-21 | 85.1 |
| Msa1387350 | MtrunA17_Chr3g0103921 | 48.980 | 98 | 41 | 3 | 18 | 113 | 36 | 126 | 4.24e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | tig0020883:+106515 | Msa1387350:CDS |
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | tig0020883:+106647 | Msa1387350:CDS |
| CAAGATCCTGCTATGGTTAA+TGG | 0.249869 | tig0020883:+106374 | Msa1387350:CDS |
| CCATGGCAGGATCTTGTTGC+TGG | 0.326139 | tig0020883:-106508 | None:intergenic |
| TAATAATATGCTTCAGACCT+TGG | 0.421796 | tig0020883:-106268 | None:intergenic |
| CACTGCCGCTGCTCAAGCAC+AGG | 0.423665 | tig0020883:+105829 | Msa1387350:CDS |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | tig0020883:-106455 | None:intergenic |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | tig0020883:-106596 | None:intergenic |
| CTGTGCTTGAGCAGCGGCAG+TGG | 0.442560 | tig0020883:-105828 | None:intergenic |
| AAAATTGCTTGAACAAGAAC+AGG | 0.450880 | tig0020883:-106314 | None:intergenic |
| GCAAAACAGCGAAAATTGCT+TGG | 0.458662 | tig0020883:-106466 | None:intergenic |
| CATGGTGGTGGTCAAGGCCA+AGG | 0.464746 | tig0020883:+106251 | Msa1387350:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | tig0020883:+106397 | Msa1387350:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | tig0020883:+106538 | Msa1387350:CDS |
| ACAAAACAGCGAAAATTGCT+TGG | 0.469717 | tig0020883:-106607 | None:intergenic |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | tig0020883:-106409 | None:intergenic |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | tig0020883:-106550 | None:intergenic |
| TTGGAAGCCCACGATGGATG+CGG | 0.505267 | tig0020883:+105802 | None:intergenic |
| CAAAACAGCGAAAATTGCTT+GGG | 0.509904 | tig0020883:-106465 | None:intergenic |
| CAAAACAGCGAAAATTGCTT+GGG | 0.524048 | tig0020883:-106606 | None:intergenic |
| CCTGCCATGGTTAATGGTGG+TGG | 0.534386 | tig0020883:+106653 | Msa1387350:CDS |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | tig0020883:+106392 | Msa1387350:CDS |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | tig0020883:+106533 | Msa1387350:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | tig0020883:+106386 | Msa1387350:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | tig0020883:+106527 | Msa1387350:CDS |
| CCACCACCATTAACCATAGC+AGG | 0.561187 | tig0020883:-106380 | None:intergenic |
| CCACCACCATTAACCATGGC+AGG | 0.564209 | tig0020883:-106653 | None:intergenic |
| CCACCACCATTAACCATGGC+AGG | 0.568848 | tig0020883:-106521 | None:intergenic |
| CCTGCTATGGTTAATGGTGG+TGG | 0.573689 | tig0020883:+106380 | Msa1387350:CDS |
| CCTGCCATGGTTAATGGTGG+TGG | 0.576171 | tig0020883:+106521 | Msa1387350:CDS |
| TCAGCAACAAGATCCTGCTA+TGG | 0.595166 | tig0020883:+106367 | Msa1387350:CDS |
| AAATCAACATGGGTTTGTGA+TGG | 0.600368 | tig0020883:+106679 | Msa1387350:CDS |
| TGCTCCACCACCATTAACCA+TGG | 0.622092 | tig0020883:-106657 | None:intergenic |
| GGTGGTGGAGCAAATCAACA+TGG | 0.627780 | tig0020883:+106668 | Msa1387350:CDS |
| TTGAACCTGTGCTTGAGCAG+CGG | 0.627913 | tig0020883:-105834 | None:intergenic |
| TCAGCAACAAGATCCTGCCA+TGG | 0.666632 | tig0020883:+106640 | Msa1387350:CDS |
| CCAGCAACAAGATCCTGCCA+TGG | 0.666762 | tig0020883:+106508 | Msa1387350:CDS |
| TTGACCACCACCATTAACCA+TGG | 0.670727 | tig0020883:-106525 | None:intergenic |
| GTGGTGGAGCAAATCAACAT+GGG | 0.698550 | tig0020883:+106669 | Msa1387350:CDS |
| GATCCTGCTATGGTTAATGG+TGG | 0.728334 | tig0020883:+106377 | Msa1387350:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | tig0020883:+106518 | Msa1387350:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | tig0020883:+106650 | Msa1387350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGGATTTTATGATTTAAGT+CGG | - | tig0020883:105934-105953 | None:intergenic | 20.0% |
| !!! | TACTTTTCTTTTGTCTTTTT+AGG | + | tig0020883:106220-106239 | Msa1387350:intron | 20.0% |
| !!! | TTGGATTTTATGATTTAAGT+CGG | - | tig0020883:105934-105953 | None:intergenic | 20.0% |
| !!! | TACTTTTCTTTTGTCTTTTT+AGG | + | tig0020883:106220-106239 | Msa1387350:intron | 20.0% |
| !! | TGGATTTTATGATTTAAGTC+GGG | - | tig0020883:105933-105952 | None:intergenic | 25.0% |
| !! | TCGATGTATTTTGCTTATTT+TGG | - | tig0020883:106006-106025 | None:intergenic | 25.0% |
| ! | TAAATCAAGGTTGTGAAAAT+CGG | - | tig0020883:106153-106172 | None:intergenic | 25.0% |
| !!! | GATATATTGACTCTAAATCA+AGG | - | tig0020883:106166-106185 | None:intergenic | 25.0% |
| ! | AGAGGGAAAAAAAATACAAT+GGG | - | tig0020883:106189-106208 | None:intergenic | 25.0% |
| ! | AAAGTAAGAATAGAAAGAGA+GGG | - | tig0020883:106206-106225 | None:intergenic | 25.0% |
| ! | AAAAGTAAGAATAGAAAGAG+AGG | - | tig0020883:106207-106226 | None:intergenic | 25.0% |
| !!! | TCTTTTTAGGAACTTTTTCA+TGG | + | tig0020883:106233-106252 | Msa1387350:intron | 25.0% |
| !! | TGGATTTTATGATTTAAGTC+GGG | - | tig0020883:105933-105952 | None:intergenic | 25.0% |
| !! | TCGATGTATTTTGCTTATTT+TGG | - | tig0020883:106006-106025 | None:intergenic | 25.0% |
| ! | TAAATCAAGGTTGTGAAAAT+CGG | - | tig0020883:106153-106172 | None:intergenic | 25.0% |
| !!! | GATATATTGACTCTAAATCA+AGG | - | tig0020883:106166-106185 | None:intergenic | 25.0% |
| ! | AGAGGGAAAAAAAATACAAT+GGG | - | tig0020883:106189-106208 | None:intergenic | 25.0% |
| ! | AAAGTAAGAATAGAAAGAGA+GGG | - | tig0020883:106206-106225 | None:intergenic | 25.0% |
| ! | AAAAGTAAGAATAGAAAGAG+AGG | - | tig0020883:106207-106226 | None:intergenic | 25.0% |
| !!! | TCTTTTTAGGAACTTTTTCA+TGG | + | tig0020883:106233-106252 | Msa1387350:intron | 25.0% |
| !!! | CTTATTTTGGAATTCCACTA+TGG | - | tig0020883:105993-106012 | None:intergenic | 30.0% |
| AAAATCGCAATCAAAATCGA+AGG | - | tig0020883:106022-106041 | None:intergenic | 30.0% | |
| GACTTTACTTCAAATCGAAA+GGG | - | tig0020883:106130-106149 | None:intergenic | 30.0% | |
| AAATCAAGGTTGTGAAAATC+GGG | - | tig0020883:106152-106171 | None:intergenic | 30.0% | |
| GAGGGAAAAAAAATACAATG+GGG | - | tig0020883:106188-106207 | None:intergenic | 30.0% | |
| GAGAGGGAAAAAAAATACAA+TGG | - | tig0020883:106190-106209 | None:intergenic | 30.0% | |
| !!! | TTTTAGGAACTTTTTCATGG+TGG | + | tig0020883:106236-106255 | Msa1387350:intron | 30.0% |
| TAATAATATGCTTCAGACCT+TGG | - | tig0020883:106271-106290 | None:intergenic | 30.0% | |
| AAAATTGCTTGAACAAGAAC+AGG | - | tig0020883:106317-106336 | None:intergenic | 30.0% | |
| !!! | CTTATTTTGGAATTCCACTA+TGG | - | tig0020883:105993-106012 | None:intergenic | 30.0% |
| AAAATCGCAATCAAAATCGA+AGG | - | tig0020883:106022-106041 | None:intergenic | 30.0% | |
| GACTTTACTTCAAATCGAAA+GGG | - | tig0020883:106130-106149 | None:intergenic | 30.0% | |
| AAATCAAGGTTGTGAAAATC+GGG | - | tig0020883:106152-106171 | None:intergenic | 30.0% | |
| GAGGGAAAAAAAATACAATG+GGG | - | tig0020883:106188-106207 | None:intergenic | 30.0% | |
| GAGAGGGAAAAAAAATACAA+TGG | - | tig0020883:106190-106209 | None:intergenic | 30.0% | |
| !!! | TTTTAGGAACTTTTTCATGG+TGG | + | tig0020883:106236-106255 | Msa1387350:intron | 30.0% |
| TAATAATATGCTTCAGACCT+TGG | - | tig0020883:106271-106290 | None:intergenic | 30.0% | |
| AAAATTGCTTGAACAAGAAC+AGG | - | tig0020883:106317-106336 | None:intergenic | 30.0% | |
| AATTGTTGAGCTTGAACTTG+AGG | - | tig0020883:105863-105882 | None:intergenic | 35.0% | |
| TCAAGTTCAAGCTCAACAAT+TGG | + | tig0020883:105862-105881 | Msa1387350:intron | 35.0% | |
| TGAAGAAAGTCGCAAAATCT+TGG | - | tig0020883:105953-105972 | None:intergenic | 35.0% | |
| GGACTTTACTTCAAATCGAA+AGG | - | tig0020883:106131-106150 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | tig0020883:106412-106431 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | tig0020883:106468-106487 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | tig0020883:106412-106431 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | tig0020883:106468-106487 | None:intergenic | 35.0% | |
| ACAAAACAGCGAAAATTGCT+TGG | - | tig0020883:106610-106629 | None:intergenic | 35.0% | |
| AAATCAACATGGGTTTGTGA+TGG | + | tig0020883:106679-106698 | Msa1387350:CDS | 35.0% | |
| AATTGTTGAGCTTGAACTTG+AGG | - | tig0020883:105863-105882 | None:intergenic | 35.0% | |
| TCAAGTTCAAGCTCAACAAT+TGG | + | tig0020883:105862-105881 | Msa1387350:intron | 35.0% | |
| TGAAGAAAGTCGCAAAATCT+TGG | - | tig0020883:105953-105972 | None:intergenic | 35.0% | |
| GGACTTTACTTCAAATCGAA+AGG | - | tig0020883:106131-106150 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | tig0020883:106412-106431 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | tig0020883:106468-106487 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | tig0020883:106412-106431 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | tig0020883:106468-106487 | None:intergenic | 35.0% | |
| ACAAAACAGCGAAAATTGCT+TGG | - | tig0020883:106610-106629 | None:intergenic | 35.0% | |
| AAATCAACATGGGTTTGTGA+TGG | + | tig0020883:106679-106698 | Msa1387350:CDS | 35.0% | |
| CTATGGATTTGAGTCCTTGA+AGG | - | tig0020883:105976-105995 | None:intergenic | 40.0% | |
| TCAAGGACTCAAATCCATAG+TGG | + | tig0020883:105976-105995 | Msa1387350:intron | 40.0% | |
| !!! | TAGGAACTTTTTCATGGTGG+TGG | + | tig0020883:106239-106258 | Msa1387350:intron | 40.0% |
| !! | TTTTAGCTGTTTTGCCTCCA+TGG | + | tig0020883:106333-106352 | Msa1387350:CDS | 40.0% |
| !!! | TGATTTTGCTGATTCCATGG+AGG | - | tig0020883:106350-106369 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGCTGATTCCA+TGG | - | tig0020883:106353-106372 | None:intergenic | 40.0% |
| CAAGATCCTGCTATGGTTAA+TGG | + | tig0020883:106374-106393 | Msa1387350:CDS | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | - | tig0020883:106458-106477 | None:intergenic | 40.0% | |
| GCAAAACAGCGAAAATTGCT+TGG | - | tig0020883:106469-106488 | None:intergenic | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | - | tig0020883:106458-106477 | None:intergenic | 40.0% | |
| !!! | GGATCTTGTTGCTGATTTTG+TGG | - | tig0020883:106362-106381 | None:intergenic | 40.0% |
| CTATGGATTTGAGTCCTTGA+AGG | - | tig0020883:105976-105995 | None:intergenic | 40.0% | |
| TCAAGGACTCAAATCCATAG+TGG | + | tig0020883:105976-105995 | Msa1387350:intron | 40.0% | |
| !!! | TAGGAACTTTTTCATGGTGG+TGG | + | tig0020883:106239-106258 | Msa1387350:intron | 40.0% |
| !! | TTTTAGCTGTTTTGCCTCCA+TGG | + | tig0020883:106333-106352 | Msa1387350:CDS | 40.0% |
| !!! | TGATTTTGCTGATTCCATGG+AGG | - | tig0020883:106350-106369 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGCTGATTCCA+TGG | - | tig0020883:106353-106372 | None:intergenic | 40.0% |
| CAAGATCCTGCTATGGTTAA+TGG | + | tig0020883:106374-106393 | Msa1387350:CDS | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | - | tig0020883:106458-106477 | None:intergenic | 40.0% | |
| GCAAAACAGCGAAAATTGCT+TGG | - | tig0020883:106469-106488 | None:intergenic | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | - | tig0020883:106458-106477 | None:intergenic | 40.0% | |
| !!! | GGATCTTGTTGCTGATTTTG+TGG | - | tig0020883:106362-106381 | None:intergenic | 40.0% |
| TGCGACTTTCTTCACCTTCA+AGG | + | tig0020883:105959-105978 | Msa1387350:intron | 45.0% | |
| ! | GATTGCGATTTTACGAGTCC+AGG | + | tig0020883:106094-106113 | Msa1387350:intron | 45.0% |
| CGAAAGGGAATAGCAAAACC+TGG | - | tig0020883:106115-106134 | None:intergenic | 45.0% | |
| !!! | CTTTTTCATGGTGGTGGTCA+AGG | + | tig0020883:106245-106264 | Msa1387350:CDS | 45.0% |
| TCAGCAACAAGATCCTGCTA+TGG | + | tig0020883:106367-106386 | Msa1387350:CDS | 45.0% | |
| GATCCTGCTATGGTTAATGG+TGG | + | tig0020883:106377-106396 | Msa1387350:CDS | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | tig0020883:106386-106405 | Msa1387350:CDS | 45.0% |
| !! | TTTTCGCTGTTTTGCCTCCA+TGG | + | tig0020883:106474-106493 | Msa1387350:CDS | 45.0% |
| !!! | GGATCTTGTTGCTGGTTTTG+CGG | - | tig0020883:106503-106522 | None:intergenic | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | + | tig0020883:106515-106534 | Msa1387350:CDS | 45.0% | |
| TTGACCACCACCATTAACCA+TGG | - | tig0020883:106387-106406 | None:intergenic | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | tig0020883:106386-106405 | Msa1387350:CDS | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | + | tig0020883:106515-106534 | Msa1387350:CDS | 45.0% | |
| ! | GTGGTGGAGCAAATCAACAT+GGG | + | tig0020883:106669-106688 | Msa1387350:CDS | 45.0% |
| TGCGACTTTCTTCACCTTCA+AGG | + | tig0020883:105959-105978 | Msa1387350:intron | 45.0% | |
| ! | GATTGCGATTTTACGAGTCC+AGG | + | tig0020883:106094-106113 | Msa1387350:intron | 45.0% |
| CGAAAGGGAATAGCAAAACC+TGG | - | tig0020883:106115-106134 | None:intergenic | 45.0% | |
| !!! | CTTTTTCATGGTGGTGGTCA+AGG | + | tig0020883:106245-106264 | Msa1387350:CDS | 45.0% |
| TCAGCAACAAGATCCTGCTA+TGG | + | tig0020883:106367-106386 | Msa1387350:CDS | 45.0% | |
| GATCCTGCTATGGTTAATGG+TGG | + | tig0020883:106377-106396 | Msa1387350:CDS | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | tig0020883:106386-106405 | Msa1387350:CDS | 45.0% |
| !! | TTTTCGCTGTTTTGCCTCCA+TGG | + | tig0020883:106474-106493 | Msa1387350:CDS | 45.0% |
| !!! | GGATCTTGTTGCTGGTTTTG+CGG | - | tig0020883:106503-106522 | None:intergenic | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | + | tig0020883:106515-106534 | Msa1387350:CDS | 45.0% | |
| TTGACCACCACCATTAACCA+TGG | - | tig0020883:106387-106406 | None:intergenic | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | tig0020883:106386-106405 | Msa1387350:CDS | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | + | tig0020883:106515-106534 | Msa1387350:CDS | 45.0% | |
| ! | GTGGTGGAGCAAATCAACAT+GGG | + | tig0020883:106669-106688 | Msa1387350:CDS | 45.0% |
| TTGAACCTGTGCTTGAGCAG+CGG | - | tig0020883:105837-105856 | None:intergenic | 50.0% | |
| CCACCACCATTAACCATAGC+AGG | - | tig0020883:106383-106402 | None:intergenic | 50.0% | |
| CCTGCTATGGTTAATGGTGG+TGG | + | tig0020883:106380-106399 | Msa1387350:CDS | 50.0% | |
| !! | TGGTTTTGCGGATACCATGG+AGG | - | tig0020883:106491-106510 | None:intergenic | 50.0% |
| !!! | TGCTGGTTTTGCGGATACCA+TGG | - | tig0020883:106494-106513 | None:intergenic | 50.0% |
| GATCCTGCCATGGTTAATGG+TGG | + | tig0020883:106518-106537 | Msa1387350:CDS | 50.0% | |
| TCAGCAACAAGATCCTGCCA+TGG | + | tig0020883:106640-106659 | Msa1387350:CDS | 50.0% | |
| GATCCTGCCATGGTTAATGG+TGG | + | tig0020883:106518-106537 | Msa1387350:CDS | 50.0% | |
| TGCTCCACCACCATTAACCA+TGG | - | tig0020883:106660-106679 | None:intergenic | 50.0% | |
| !! | GGTGGTGGAGCAAATCAACA+TGG | + | tig0020883:106668-106687 | Msa1387350:CDS | 50.0% |
| TTGAACCTGTGCTTGAGCAG+CGG | - | tig0020883:105837-105856 | None:intergenic | 50.0% | |
| CCACCACCATTAACCATAGC+AGG | - | tig0020883:106383-106402 | None:intergenic | 50.0% | |
| CCTGCTATGGTTAATGGTGG+TGG | + | tig0020883:106380-106399 | Msa1387350:CDS | 50.0% | |
| !! | TGGTTTTGCGGATACCATGG+AGG | - | tig0020883:106491-106510 | None:intergenic | 50.0% |
| !!! | TGCTGGTTTTGCGGATACCA+TGG | - | tig0020883:106494-106513 | None:intergenic | 50.0% |
| GATCCTGCCATGGTTAATGG+TGG | + | tig0020883:106518-106537 | Msa1387350:CDS | 50.0% | |
| TCAGCAACAAGATCCTGCCA+TGG | + | tig0020883:106640-106659 | Msa1387350:CDS | 50.0% | |
| GATCCTGCCATGGTTAATGG+TGG | + | tig0020883:106518-106537 | Msa1387350:CDS | 50.0% | |
| TGCTCCACCACCATTAACCA+TGG | - | tig0020883:106660-106679 | None:intergenic | 50.0% | |
| !! | GGTGGTGGAGCAAATCAACA+TGG | + | tig0020883:106668-106687 | Msa1387350:CDS | 50.0% |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | tig0020883:106392-106411 | Msa1387350:CDS | 55.0% |
| CCATGGCAGGATCTTGTTGC+TGG | - | tig0020883:106511-106530 | None:intergenic | 55.0% | |
| CCAGCAACAAGATCCTGCCA+TGG | + | tig0020883:106508-106527 | Msa1387350:CDS | 55.0% | |
| CCACCACCATTAACCATGGC+AGG | - | tig0020883:106524-106543 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | tig0020883:106521-106540 | Msa1387350:CDS | 55.0% | |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | tig0020883:106392-106411 | Msa1387350:CDS | 55.0% |
| CCACCACCATTAACCATGGC+AGG | - | tig0020883:106524-106543 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | tig0020883:106521-106540 | Msa1387350:CDS | 55.0% | |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | tig0020883:106392-106411 | Msa1387350:CDS | 55.0% |
| CCATGGCAGGATCTTGTTGC+TGG | - | tig0020883:106511-106530 | None:intergenic | 55.0% | |
| CCAGCAACAAGATCCTGCCA+TGG | + | tig0020883:106508-106527 | Msa1387350:CDS | 55.0% | |
| CCACCACCATTAACCATGGC+AGG | - | tig0020883:106524-106543 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | tig0020883:106521-106540 | Msa1387350:CDS | 55.0% | |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | tig0020883:106392-106411 | Msa1387350:CDS | 55.0% |
| CCACCACCATTAACCATGGC+AGG | - | tig0020883:106524-106543 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | tig0020883:106521-106540 | Msa1387350:CDS | 55.0% | |
| !! | CATGGTGGTGGTCAAGGCCA+AGG | + | tig0020883:106251-106270 | Msa1387350:CDS | 60.0% |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | tig0020883:106256-106275 | Msa1387350:CDS | 60.0% | |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | tig0020883:106256-106275 | Msa1387350:CDS | 60.0% | |
| !! | CATGGTGGTGGTCAAGGCCA+AGG | + | tig0020883:106251-106270 | Msa1387350:CDS | 60.0% |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | tig0020883:106256-106275 | Msa1387350:CDS | 60.0% | |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | tig0020883:106256-106275 | Msa1387350:CDS | 60.0% | |
| CTGTGCTTGAGCAGCGGCAG+TGG | - | tig0020883:105831-105850 | None:intergenic | 65.0% | |
| CACTGCCGCTGCTCAAGCAC+AGG | + | tig0020883:105829-105848 | Msa1387350:CDS | 65.0% | |
| CTGTGCTTGAGCAGCGGCAG+TGG | - | tig0020883:105831-105850 | None:intergenic | 65.0% | |
| CACTGCCGCTGCTCAAGCAC+AGG | + | tig0020883:105829-105848 | Msa1387350:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020883 | gene | 105815 | 106712 | 105815 | ID=Msa1387350;Name=Msa1387350 |
| tig0020883 | mRNA | 105815 | 106712 | 105815 | ID=Msa1387350-mRNA-1;Parent=Msa1387350;Name=Msa1387350-mRNA-1;_AED=0.13;_eAED=0.16;_QI=0|0|0|0.5|1|1|2|0|168 |
| tig0020883 | exon | 105815 | 105850 | 105815 | ID=Msa1387350-mRNA-1:exon:10524;Parent=Msa1387350-mRNA-1 |
| tig0020883 | exon | 106242 | 106712 | 106242 | ID=Msa1387350-mRNA-1:exon:10525;Parent=Msa1387350-mRNA-1 |
| tig0020883 | CDS | 105815 | 105850 | 105815 | ID=Msa1387350-mRNA-1:cds;Parent=Msa1387350-mRNA-1 |
| tig0020883 | CDS | 106242 | 106712 | 106242 | ID=Msa1387350-mRNA-1:cds;Parent=Msa1387350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
