Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455810 | RHN67425.1 | 63.043 | 92 | 20 | 2 | 80 | 157 | 4 | 95 | 2.65e-17 | 85.1 |
| Msa0455810 | RHN67425.1 | 64.130 | 92 | 22 | 2 | 33 | 113 | 4 | 95 | 1.84e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455810 | A0A396ITY4 | 63.043 | 92 | 20 | 2 | 80 | 157 | 4 | 95 | 1.26e-17 | 85.1 |
| Msa0455810 | A0A396ITY4 | 64.130 | 92 | 22 | 2 | 33 | 113 | 4 | 95 | 8.79e-18 | 85.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0411330 | Msa0455810 | 0.950635 | 1.094563e-108 | -8.615850e-47 |
| Msa0455810 | Msa1387340 | 0.858433 | 8.264285e-63 | -8.615850e-47 |
| Msa0455810 | Msa1387350 | 0.937884 | 1.674446e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455810 | MtrunA17_Chr3g0102591 | 64.130 | 92 | 22 | 2 | 33 | 113 | 4 | 95 | 1.69e-21 | 85.5 |
| Msa0455810 | MtrunA17_Chr3g0102591 | 63.043 | 92 | 20 | 2 | 80 | 157 | 4 | 95 | 2.43e-21 | 85.1 |
| Msa0455810 | MtrunA17_Chr3g0103921 | 51.852 | 108 | 39 | 4 | 65 | 166 | 36 | 136 | 5.04e-21 | 85.1 |
| Msa0455810 | MtrunA17_Chr3g0103921 | 48.980 | 98 | 41 | 3 | 18 | 113 | 36 | 126 | 4.24e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | 3_3:-48844512 | Msa0455810:CDS |
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | 3_3:-48844644 | Msa0455810:CDS |
| CAAGATCCTGCTATGGTTAA+TGG | 0.249869 | 3_3:-48844785 | Msa0455810:CDS |
| CCATGGCAGGATCTTGTTGC+TGG | 0.326139 | 3_3:+48844651 | None:intergenic |
| TAATAATATGCTTCAGACCT+TGG | 0.421796 | 3_3:+48844891 | None:intergenic |
| CACTGCCGCTGCTCAAGCAC+AGG | 0.423665 | 3_3:-48845330 | Msa0455810:intron |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | 3_3:+48844563 | None:intergenic |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | 3_3:+48844704 | None:intergenic |
| CTGTGCTTGAGCAGCGGCAG+TGG | 0.442560 | 3_3:+48845331 | None:intergenic |
| AAAATTGCTTGAACAAGAAC+AGG | 0.450880 | 3_3:+48844845 | None:intergenic |
| GCAAAACAGCGAAAATTGCT+TGG | 0.458662 | 3_3:+48844693 | None:intergenic |
| CATGGTGGTGGTCAAGGCCA+AGG | 0.464746 | 3_3:-48844908 | Msa0455810:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | 3_3:-48844621 | Msa0455810:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | 3_3:-48844762 | Msa0455810:CDS |
| ACAAAACAGCGAAAATTGCT+TGG | 0.469717 | 3_3:+48844552 | None:intergenic |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | 3_3:+48844609 | None:intergenic |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | 3_3:+48844750 | None:intergenic |
| TTGGAAGCCCACGATGGATG+CGG | 0.505267 | 3_3:-48845357 | None:intergenic |
| CAAAACAGCGAAAATTGCTT+GGG | 0.509904 | 3_3:+48844694 | None:intergenic |
| CAAAACAGCGAAAATTGCTT+GGG | 0.524048 | 3_3:+48844553 | None:intergenic |
| CCTGCCATGGTTAATGGTGG+TGG | 0.534386 | 3_3:-48844506 | Msa0455810:CDS |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | 3_3:-48844626 | Msa0455810:CDS |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | 3_3:-48844767 | Msa0455810:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | 3_3:-48844632 | Msa0455810:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | 3_3:-48844773 | Msa0455810:CDS |
| CCACCACCATTAACCATAGC+AGG | 0.561187 | 3_3:+48844779 | None:intergenic |
| CCACCACCATTAACCATGGC+AGG | 0.564209 | 3_3:+48844506 | None:intergenic |
| CCACCACCATTAACCATGGC+AGG | 0.568848 | 3_3:+48844638 | None:intergenic |
| CCTGCTATGGTTAATGGTGG+TGG | 0.573689 | 3_3:-48844779 | Msa0455810:CDS |
| CCTGCCATGGTTAATGGTGG+TGG | 0.576171 | 3_3:-48844638 | Msa0455810:CDS |
| TCAGCAACAAGATCCTGCTA+TGG | 0.595166 | 3_3:-48844792 | Msa0455810:CDS |
| AAATCAACATGGGTTTGTGA+TGG | 0.600368 | 3_3:-48844480 | Msa0455810:CDS |
| TGCTCCACCACCATTAACCA+TGG | 0.622092 | 3_3:+48844502 | None:intergenic |
| GGTGGTGGAGCAAATCAACA+TGG | 0.627780 | 3_3:-48844491 | Msa0455810:CDS |
| TTGAACCTGTGCTTGAGCAG+CGG | 0.627913 | 3_3:+48845325 | None:intergenic |
| TCAGCAACAAGATCCTGCCA+TGG | 0.666632 | 3_3:-48844519 | Msa0455810:CDS |
| CCAGCAACAAGATCCTGCCA+TGG | 0.666762 | 3_3:-48844651 | Msa0455810:CDS |
| TTGACCACCACCATTAACCA+TGG | 0.670727 | 3_3:+48844634 | None:intergenic |
| GTGGTGGAGCAAATCAACAT+GGG | 0.698550 | 3_3:-48844490 | Msa0455810:CDS |
| GATCCTGCTATGGTTAATGG+TGG | 0.728334 | 3_3:-48844782 | Msa0455810:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | 3_3:-48844509 | Msa0455810:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | 3_3:-48844641 | Msa0455810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGGATTTTATGATTTAAGT+CGG | + | chr3_3:48844588-48844607 | None:intergenic | 20.0% |
| !!! | TACTTTTCTTTTGTCTTTTT+AGG | - | chr3_3:48844874-48844893 | Msa0455810:CDS | 20.0% |
| !!! | TTGGATTTTATGATTTAAGT+CGG | + | chr3_3:48844588-48844607 | None:intergenic | 20.0% |
| !!! | TACTTTTCTTTTGTCTTTTT+AGG | - | chr3_3:48844874-48844893 | Msa0455810:CDS | 20.0% |
| !! | TGGATTTTATGATTTAAGTC+GGG | + | chr3_3:48844587-48844606 | None:intergenic | 25.0% |
| !! | TCGATGTATTTTGCTTATTT+TGG | + | chr3_3:48844660-48844679 | None:intergenic | 25.0% |
| ! | TAAATCAAGGTTGTGAAAAT+CGG | + | chr3_3:48844807-48844826 | None:intergenic | 25.0% |
| !!! | GATATATTGACTCTAAATCA+AGG | + | chr3_3:48844820-48844839 | None:intergenic | 25.0% |
| ! | AGAGGGAAAAAAAATACAAT+GGG | + | chr3_3:48844843-48844862 | None:intergenic | 25.0% |
| ! | AAAGTAAGAATAGAAAGAGA+GGG | + | chr3_3:48844860-48844879 | None:intergenic | 25.0% |
| ! | AAAAGTAAGAATAGAAAGAG+AGG | + | chr3_3:48844861-48844880 | None:intergenic | 25.0% |
| !!! | TCTTTTTAGGAACTTTTTCA+TGG | - | chr3_3:48844887-48844906 | Msa0455810:CDS | 25.0% |
| !! | TGGATTTTATGATTTAAGTC+GGG | + | chr3_3:48844587-48844606 | None:intergenic | 25.0% |
| !! | TCGATGTATTTTGCTTATTT+TGG | + | chr3_3:48844660-48844679 | None:intergenic | 25.0% |
| ! | TAAATCAAGGTTGTGAAAAT+CGG | + | chr3_3:48844807-48844826 | None:intergenic | 25.0% |
| !!! | GATATATTGACTCTAAATCA+AGG | + | chr3_3:48844820-48844839 | None:intergenic | 25.0% |
| ! | AGAGGGAAAAAAAATACAAT+GGG | + | chr3_3:48844843-48844862 | None:intergenic | 25.0% |
| ! | AAAGTAAGAATAGAAAGAGA+GGG | + | chr3_3:48844860-48844879 | None:intergenic | 25.0% |
| ! | AAAAGTAAGAATAGAAAGAG+AGG | + | chr3_3:48844861-48844880 | None:intergenic | 25.0% |
| !!! | TCTTTTTAGGAACTTTTTCA+TGG | - | chr3_3:48844887-48844906 | Msa0455810:CDS | 25.0% |
| !!! | CTTATTTTGGAATTCCACTA+TGG | + | chr3_3:48844647-48844666 | None:intergenic | 30.0% |
| AAAATCGCAATCAAAATCGA+AGG | + | chr3_3:48844676-48844695 | None:intergenic | 30.0% | |
| GACTTTACTTCAAATCGAAA+GGG | + | chr3_3:48844784-48844803 | None:intergenic | 30.0% | |
| AAATCAAGGTTGTGAAAATC+GGG | + | chr3_3:48844806-48844825 | None:intergenic | 30.0% | |
| GAGGGAAAAAAAATACAATG+GGG | + | chr3_3:48844842-48844861 | None:intergenic | 30.0% | |
| GAGAGGGAAAAAAAATACAA+TGG | + | chr3_3:48844844-48844863 | None:intergenic | 30.0% | |
| !!! | TTTTAGGAACTTTTTCATGG+TGG | - | chr3_3:48844890-48844909 | Msa0455810:CDS | 30.0% |
| TAATAATATGCTTCAGACCT+TGG | + | chr3_3:48844925-48844944 | None:intergenic | 30.0% | |
| AAAATTGCTTGAACAAGAAC+AGG | + | chr3_3:48844971-48844990 | None:intergenic | 30.0% | |
| !!! | CTTATTTTGGAATTCCACTA+TGG | + | chr3_3:48844647-48844666 | None:intergenic | 30.0% |
| AAAATCGCAATCAAAATCGA+AGG | + | chr3_3:48844676-48844695 | None:intergenic | 30.0% | |
| GACTTTACTTCAAATCGAAA+GGG | + | chr3_3:48844784-48844803 | None:intergenic | 30.0% | |
| AAATCAAGGTTGTGAAAATC+GGG | + | chr3_3:48844806-48844825 | None:intergenic | 30.0% | |
| GAGGGAAAAAAAATACAATG+GGG | + | chr3_3:48844842-48844861 | None:intergenic | 30.0% | |
| GAGAGGGAAAAAAAATACAA+TGG | + | chr3_3:48844844-48844863 | None:intergenic | 30.0% | |
| !!! | TTTTAGGAACTTTTTCATGG+TGG | - | chr3_3:48844890-48844909 | Msa0455810:CDS | 30.0% |
| TAATAATATGCTTCAGACCT+TGG | + | chr3_3:48844925-48844944 | None:intergenic | 30.0% | |
| AAAATTGCTTGAACAAGAAC+AGG | + | chr3_3:48844971-48844990 | None:intergenic | 30.0% | |
| AATTGTTGAGCTTGAACTTG+AGG | + | chr3_3:48844517-48844536 | None:intergenic | 35.0% | |
| TCAAGTTCAAGCTCAACAAT+TGG | - | chr3_3:48844516-48844535 | Msa0455810:CDS | 35.0% | |
| TGAAGAAAGTCGCAAAATCT+TGG | + | chr3_3:48844607-48844626 | None:intergenic | 35.0% | |
| GGACTTTACTTCAAATCGAA+AGG | + | chr3_3:48844785-48844804 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | + | chr3_3:48845066-48845085 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | + | chr3_3:48845122-48845141 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | + | chr3_3:48845066-48845085 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | + | chr3_3:48845122-48845141 | None:intergenic | 35.0% | |
| ACAAAACAGCGAAAATTGCT+TGG | + | chr3_3:48845264-48845283 | None:intergenic | 35.0% | |
| AAATCAACATGGGTTTGTGA+TGG | - | chr3_3:48845333-48845352 | Msa0455810:CDS | 35.0% | |
| AATTGTTGAGCTTGAACTTG+AGG | + | chr3_3:48844517-48844536 | None:intergenic | 35.0% | |
| TCAAGTTCAAGCTCAACAAT+TGG | - | chr3_3:48844516-48844535 | Msa0455810:CDS | 35.0% | |
| TGAAGAAAGTCGCAAAATCT+TGG | + | chr3_3:48844607-48844626 | None:intergenic | 35.0% | |
| GGACTTTACTTCAAATCGAA+AGG | + | chr3_3:48844785-48844804 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | + | chr3_3:48845066-48845085 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | + | chr3_3:48845122-48845141 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | + | chr3_3:48845066-48845085 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | + | chr3_3:48845122-48845141 | None:intergenic | 35.0% | |
| ACAAAACAGCGAAAATTGCT+TGG | + | chr3_3:48845264-48845283 | None:intergenic | 35.0% | |
| AAATCAACATGGGTTTGTGA+TGG | - | chr3_3:48845333-48845352 | Msa0455810:CDS | 35.0% | |
| CTATGGATTTGAGTCCTTGA+AGG | + | chr3_3:48844630-48844649 | None:intergenic | 40.0% | |
| TCAAGGACTCAAATCCATAG+TGG | - | chr3_3:48844630-48844649 | Msa0455810:CDS | 40.0% | |
| !!! | TAGGAACTTTTTCATGGTGG+TGG | - | chr3_3:48844893-48844912 | Msa0455810:CDS | 40.0% |
| !! | TTTTAGCTGTTTTGCCTCCA+TGG | - | chr3_3:48844987-48845006 | Msa0455810:intron | 40.0% |
| !!! | TGATTTTGCTGATTCCATGG+AGG | + | chr3_3:48845004-48845023 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGCTGATTCCA+TGG | + | chr3_3:48845007-48845026 | None:intergenic | 40.0% |
| CAAGATCCTGCTATGGTTAA+TGG | - | chr3_3:48845028-48845047 | Msa0455810:intron | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | + | chr3_3:48845112-48845131 | None:intergenic | 40.0% | |
| GCAAAACAGCGAAAATTGCT+TGG | + | chr3_3:48845123-48845142 | None:intergenic | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | + | chr3_3:48845112-48845131 | None:intergenic | 40.0% | |
| !!! | GGATCTTGTTGCTGATTTTG+TGG | + | chr3_3:48845016-48845035 | None:intergenic | 40.0% |
| CTATGGATTTGAGTCCTTGA+AGG | + | chr3_3:48844630-48844649 | None:intergenic | 40.0% | |
| TCAAGGACTCAAATCCATAG+TGG | - | chr3_3:48844630-48844649 | Msa0455810:CDS | 40.0% | |
| !!! | TAGGAACTTTTTCATGGTGG+TGG | - | chr3_3:48844893-48844912 | Msa0455810:CDS | 40.0% |
| !! | TTTTAGCTGTTTTGCCTCCA+TGG | - | chr3_3:48844987-48845006 | Msa0455810:intron | 40.0% |
| !!! | TGATTTTGCTGATTCCATGG+AGG | + | chr3_3:48845004-48845023 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGCTGATTCCA+TGG | + | chr3_3:48845007-48845026 | None:intergenic | 40.0% |
| CAAGATCCTGCTATGGTTAA+TGG | - | chr3_3:48845028-48845047 | Msa0455810:intron | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | + | chr3_3:48845112-48845131 | None:intergenic | 40.0% | |
| GCAAAACAGCGAAAATTGCT+TGG | + | chr3_3:48845123-48845142 | None:intergenic | 40.0% | |
| AAAATTGCTTGGGCAAGAAC+AGG | + | chr3_3:48845112-48845131 | None:intergenic | 40.0% | |
| !!! | GGATCTTGTTGCTGATTTTG+TGG | + | chr3_3:48845016-48845035 | None:intergenic | 40.0% |
| TGCGACTTTCTTCACCTTCA+AGG | - | chr3_3:48844613-48844632 | Msa0455810:CDS | 45.0% | |
| ! | GATTGCGATTTTACGAGTCC+AGG | - | chr3_3:48844748-48844767 | Msa0455810:CDS | 45.0% |
| CGAAAGGGAATAGCAAAACC+TGG | + | chr3_3:48844769-48844788 | None:intergenic | 45.0% | |
| !!! | CTTTTTCATGGTGGTGGTCA+AGG | - | chr3_3:48844899-48844918 | Msa0455810:CDS | 45.0% |
| TCAGCAACAAGATCCTGCTA+TGG | - | chr3_3:48845021-48845040 | Msa0455810:intron | 45.0% | |
| GATCCTGCTATGGTTAATGG+TGG | - | chr3_3:48845031-48845050 | Msa0455810:intron | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | - | chr3_3:48845040-48845059 | Msa0455810:intron | 45.0% |
| !! | TTTTCGCTGTTTTGCCTCCA+TGG | - | chr3_3:48845128-48845147 | Msa0455810:intron | 45.0% |
| !!! | GGATCTTGTTGCTGGTTTTG+CGG | + | chr3_3:48845157-48845176 | None:intergenic | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | - | chr3_3:48845169-48845188 | Msa0455810:intron | 45.0% | |
| TTGACCACCACCATTAACCA+TGG | + | chr3_3:48845041-48845060 | None:intergenic | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | - | chr3_3:48845040-48845059 | Msa0455810:intron | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | - | chr3_3:48845169-48845188 | Msa0455810:intron | 45.0% | |
| ! | GTGGTGGAGCAAATCAACAT+GGG | - | chr3_3:48845323-48845342 | Msa0455810:intron | 45.0% |
| TGCGACTTTCTTCACCTTCA+AGG | - | chr3_3:48844613-48844632 | Msa0455810:CDS | 45.0% | |
| ! | GATTGCGATTTTACGAGTCC+AGG | - | chr3_3:48844748-48844767 | Msa0455810:CDS | 45.0% |
| CGAAAGGGAATAGCAAAACC+TGG | + | chr3_3:48844769-48844788 | None:intergenic | 45.0% | |
| !!! | CTTTTTCATGGTGGTGGTCA+AGG | - | chr3_3:48844899-48844918 | Msa0455810:CDS | 45.0% |
| TCAGCAACAAGATCCTGCTA+TGG | - | chr3_3:48845021-48845040 | Msa0455810:intron | 45.0% | |
| GATCCTGCTATGGTTAATGG+TGG | - | chr3_3:48845031-48845050 | Msa0455810:intron | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | - | chr3_3:48845040-48845059 | Msa0455810:intron | 45.0% |
| !! | TTTTCGCTGTTTTGCCTCCA+TGG | - | chr3_3:48845128-48845147 | Msa0455810:intron | 45.0% |
| !!! | GGATCTTGTTGCTGGTTTTG+CGG | + | chr3_3:48845157-48845176 | None:intergenic | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | - | chr3_3:48845169-48845188 | Msa0455810:intron | 45.0% | |
| TTGACCACCACCATTAACCA+TGG | + | chr3_3:48845041-48845060 | None:intergenic | 45.0% | |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | - | chr3_3:48845040-48845059 | Msa0455810:intron | 45.0% |
| CAAGATCCTGCCATGGTTAA+TGG | - | chr3_3:48845169-48845188 | Msa0455810:intron | 45.0% | |
| ! | GTGGTGGAGCAAATCAACAT+GGG | - | chr3_3:48845323-48845342 | Msa0455810:intron | 45.0% |
| TTGAACCTGTGCTTGAGCAG+CGG | + | chr3_3:48844491-48844510 | None:intergenic | 50.0% | |
| CCACCACCATTAACCATAGC+AGG | + | chr3_3:48845037-48845056 | None:intergenic | 50.0% | |
| CCTGCTATGGTTAATGGTGG+TGG | - | chr3_3:48845034-48845053 | Msa0455810:intron | 50.0% | |
| !! | TGGTTTTGCGGATACCATGG+AGG | + | chr3_3:48845145-48845164 | None:intergenic | 50.0% |
| !!! | TGCTGGTTTTGCGGATACCA+TGG | + | chr3_3:48845148-48845167 | None:intergenic | 50.0% |
| GATCCTGCCATGGTTAATGG+TGG | - | chr3_3:48845172-48845191 | Msa0455810:intron | 50.0% | |
| TCAGCAACAAGATCCTGCCA+TGG | - | chr3_3:48845294-48845313 | Msa0455810:intron | 50.0% | |
| GATCCTGCCATGGTTAATGG+TGG | - | chr3_3:48845172-48845191 | Msa0455810:intron | 50.0% | |
| TGCTCCACCACCATTAACCA+TGG | + | chr3_3:48845314-48845333 | None:intergenic | 50.0% | |
| !! | GGTGGTGGAGCAAATCAACA+TGG | - | chr3_3:48845322-48845341 | Msa0455810:intron | 50.0% |
| TTGAACCTGTGCTTGAGCAG+CGG | + | chr3_3:48844491-48844510 | None:intergenic | 50.0% | |
| CCACCACCATTAACCATAGC+AGG | + | chr3_3:48845037-48845056 | None:intergenic | 50.0% | |
| CCTGCTATGGTTAATGGTGG+TGG | - | chr3_3:48845034-48845053 | Msa0455810:intron | 50.0% | |
| !! | TGGTTTTGCGGATACCATGG+AGG | + | chr3_3:48845145-48845164 | None:intergenic | 50.0% |
| !!! | TGCTGGTTTTGCGGATACCA+TGG | + | chr3_3:48845148-48845167 | None:intergenic | 50.0% |
| GATCCTGCCATGGTTAATGG+TGG | - | chr3_3:48845172-48845191 | Msa0455810:intron | 50.0% | |
| TCAGCAACAAGATCCTGCCA+TGG | - | chr3_3:48845294-48845313 | Msa0455810:intron | 50.0% | |
| GATCCTGCCATGGTTAATGG+TGG | - | chr3_3:48845172-48845191 | Msa0455810:intron | 50.0% | |
| TGCTCCACCACCATTAACCA+TGG | + | chr3_3:48845314-48845333 | None:intergenic | 50.0% | |
| !! | GGTGGTGGAGCAAATCAACA+TGG | - | chr3_3:48845322-48845341 | Msa0455810:intron | 50.0% |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | - | chr3_3:48845046-48845065 | Msa0455810:intron | 55.0% |
| CCATGGCAGGATCTTGTTGC+TGG | + | chr3_3:48845165-48845184 | None:intergenic | 55.0% | |
| CCAGCAACAAGATCCTGCCA+TGG | - | chr3_3:48845162-48845181 | Msa0455810:intron | 55.0% | |
| CCACCACCATTAACCATGGC+AGG | + | chr3_3:48845178-48845197 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | - | chr3_3:48845175-48845194 | Msa0455810:intron | 55.0% | |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | - | chr3_3:48845046-48845065 | Msa0455810:intron | 55.0% |
| CCACCACCATTAACCATGGC+AGG | + | chr3_3:48845178-48845197 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | - | chr3_3:48845175-48845194 | Msa0455810:intron | 55.0% | |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | - | chr3_3:48845046-48845065 | Msa0455810:intron | 55.0% |
| CCATGGCAGGATCTTGTTGC+TGG | + | chr3_3:48845165-48845184 | None:intergenic | 55.0% | |
| CCAGCAACAAGATCCTGCCA+TGG | - | chr3_3:48845162-48845181 | Msa0455810:intron | 55.0% | |
| CCACCACCATTAACCATGGC+AGG | + | chr3_3:48845178-48845197 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | - | chr3_3:48845175-48845194 | Msa0455810:intron | 55.0% | |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | - | chr3_3:48845046-48845065 | Msa0455810:intron | 55.0% |
| CCACCACCATTAACCATGGC+AGG | + | chr3_3:48845178-48845197 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | - | chr3_3:48845175-48845194 | Msa0455810:intron | 55.0% | |
| !! | CATGGTGGTGGTCAAGGCCA+AGG | - | chr3_3:48844905-48844924 | Msa0455810:CDS | 60.0% |
| TGGTGGTCAAGGCCAAGGTC+TGG | - | chr3_3:48844910-48844929 | Msa0455810:CDS | 60.0% | |
| TGGTGGTCAAGGCCAAGGTC+TGG | - | chr3_3:48844910-48844929 | Msa0455810:CDS | 60.0% | |
| !! | CATGGTGGTGGTCAAGGCCA+AGG | - | chr3_3:48844905-48844924 | Msa0455810:CDS | 60.0% |
| TGGTGGTCAAGGCCAAGGTC+TGG | - | chr3_3:48844910-48844929 | Msa0455810:CDS | 60.0% | |
| TGGTGGTCAAGGCCAAGGTC+TGG | - | chr3_3:48844910-48844929 | Msa0455810:CDS | 60.0% | |
| CTGTGCTTGAGCAGCGGCAG+TGG | + | chr3_3:48844485-48844504 | None:intergenic | 65.0% | |
| CACTGCCGCTGCTCAAGCAC+AGG | - | chr3_3:48844483-48844502 | Msa0455810:CDS | 65.0% | |
| CTGTGCTTGAGCAGCGGCAG+TGG | + | chr3_3:48844485-48844504 | None:intergenic | 65.0% | |
| CACTGCCGCTGCTCAAGCAC+AGG | - | chr3_3:48844483-48844502 | Msa0455810:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 48844469 | 48845366 | 48844469 | ID=Msa0455810;Name=Msa0455810 |
| chr3_3 | mRNA | 48844469 | 48845366 | 48844469 | ID=Msa0455810-mRNA-1;Parent=Msa0455810;Name=Msa0455810-mRNA-1;_AED=0.13;_eAED=0.15;_QI=0|0|0|0.5|1|1|2|0|168 |
| chr3_3 | exon | 48845331 | 48845366 | 48845331 | ID=Msa0455810-mRNA-1:exon:9200;Parent=Msa0455810-mRNA-1 |
| chr3_3 | exon | 48844469 | 48844939 | 48844469 | ID=Msa0455810-mRNA-1:exon:9199;Parent=Msa0455810-mRNA-1 |
| chr3_3 | CDS | 48845331 | 48845366 | 48845331 | ID=Msa0455810-mRNA-1:cds;Parent=Msa0455810-mRNA-1 |
| chr3_3 | CDS | 48844469 | 48844939 | 48844469 | ID=Msa0455810-mRNA-1:cds;Parent=Msa0455810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
