Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0413960 | XP_013460373.1 | 93.275 | 461 | 31 | 0 | 1 | 461 | 1 | 461 | 0.0 | 895 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0413960 | sp|Q8GYW8|SCT_ARATH | 37.365 | 463 | 262 | 12 | 8 | 460 | 11 | 455 | 3.40e-89 | 282 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0413960 | A0A072UYC5 | 93.275 | 461 | 31 | 0 | 1 | 461 | 1 | 461 | 0.0 | 895 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0413960 | Msa0459030 | 0.831102 | 2.019476e-55 | -8.615850e-47 |
Msa0261330 | Msa0413960 | 0.812459 | 4.194538e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0413960 | MtrunA17_Chr3g0106761 | 88.698 | 407 | 46 | 0 | 55 | 461 | 1 | 407 | 0.0 | 754 |
Msa0413960 | MtrunA17_Chr3g0106741 | 92.105 | 380 | 30 | 0 | 82 | 461 | 59 | 438 | 0.0 | 734 |
Msa0413960 | MtrunA17_Chr3g0106691 | 68.602 | 465 | 137 | 5 | 1 | 460 | 47 | 507 | 0.0 | 664 |
Msa0413960 | MtrunA17_Chr3g0106661 | 66.596 | 470 | 146 | 6 | 1 | 461 | 1 | 468 | 0.0 | 639 |
Msa0413960 | MtrunA17_Chr3g0106721 | 67.411 | 448 | 134 | 3 | 1 | 445 | 1 | 439 | 0.0 | 615 |
Msa0413960 | MtrunA17_Chr6g0470591 | 57.204 | 465 | 181 | 10 | 4 | 457 | 5 | 462 | 0.0 | 513 |
Msa0413960 | MtrunA17_Chr4g0027071 | 51.812 | 469 | 198 | 12 | 4 | 460 | 6 | 458 | 2.72e-157 | 454 |
Msa0413960 | MtrunA17_Chr3g0106711 | 71.121 | 232 | 62 | 3 | 1 | 228 | 1 | 231 | 7.24e-119 | 347 |
Msa0413960 | MtrunA17_Chr3g0106701 | 63.953 | 172 | 59 | 2 | 291 | 460 | 1 | 171 | 2.26e-74 | 231 |
Msa0413960 | MtrunA17_Chr3g0106631 | 68.421 | 152 | 48 | 0 | 151 | 302 | 2 | 153 | 6.46e-73 | 227 |
Msa0413960 | MtrunA17_Chr2g0283361 | 31.957 | 460 | 273 | 14 | 10 | 455 | 2 | 435 | 1.31e-66 | 220 |
Msa0413960 | MtrunA17_Chr3g0106771 | 86.207 | 87 | 12 | 0 | 1 | 87 | 1 | 87 | 1.73e-46 | 156 |
Msa0413960 | MtrunA17_Chr3g0106751 | 82.759 | 87 | 15 | 0 | 1 | 87 | 1 | 87 | 6.08e-44 | 149 |
Msa0413960 | MtrunA17_Chr8g0386141 | 28.416 | 461 | 279 | 16 | 8 | 455 | 5 | 427 | 1.38e-43 | 159 |
Msa0413960 | MtrunA17_Chr7g0270771 | 34.859 | 284 | 155 | 8 | 17 | 296 | 12 | 269 | 6.34e-43 | 152 |
Msa0413960 | MtrunA17_Chr3g0106621 | 56.250 | 128 | 47 | 2 | 333 | 460 | 2 | 120 | 4.19e-42 | 145 |
Msa0413960 | MtrunA17_Chr7g0224391 | 31.084 | 415 | 240 | 18 | 2 | 401 | 9 | 392 | 5.84e-41 | 151 |
Msa0413960 | MtrunA17_Chr1g0165681 | 31.653 | 357 | 211 | 11 | 17 | 361 | 16 | 351 | 1.61e-40 | 150 |
Msa0413960 | MtrunA17_Chr1g0165671 | 27.912 | 455 | 281 | 15 | 17 | 457 | 34 | 455 | 1.71e-39 | 148 |
Msa0413960 | MtrunA17_Chr1g0165661 | 29.011 | 455 | 278 | 15 | 17 | 457 | 16 | 439 | 2.82e-39 | 147 |
Msa0413960 | MtrunA17_Chr3g0132001 | 27.912 | 455 | 282 | 19 | 8 | 452 | 12 | 430 | 3.89e-39 | 146 |
Msa0413960 | MtrunA17_Chr3g0113821 | 27.803 | 446 | 271 | 17 | 10 | 427 | 5 | 427 | 1.35e-38 | 145 |
Msa0413960 | MtrunA17_Chr3g0106641 | 77.778 | 90 | 18 | 1 | 1 | 88 | 44 | 133 | 1.88e-38 | 136 |
Msa0413960 | MtrunA17_Chr1g0191081 | 28.035 | 453 | 284 | 15 | 17 | 457 | 25 | 447 | 3.09e-37 | 141 |
Msa0413960 | MtrunA17_Chr2g0306321 | 29.221 | 462 | 272 | 21 | 18 | 454 | 26 | 457 | 3.54e-37 | 142 |
Msa0413960 | MtrunA17_Chr5g0433641 | 27.041 | 392 | 261 | 10 | 17 | 401 | 17 | 390 | 2.77e-35 | 136 |
Msa0413960 | MtrunA17_Chr7g0273761 | 30.051 | 396 | 245 | 14 | 17 | 401 | 389 | 763 | 5.22e-34 | 135 |
Msa0413960 | MtrunA17_Chr7g0273761 | 26.959 | 319 | 198 | 12 | 150 | 457 | 32 | 326 | 2.88e-18 | 87.8 |
Msa0413960 | MtrunA17_Chr7g0273721 | 27.919 | 394 | 256 | 11 | 17 | 401 | 18 | 392 | 1.44e-33 | 131 |
Msa0413960 | MtrunA17_Chr3g0106651 | 72.289 | 83 | 22 | 1 | 6 | 87 | 36 | 118 | 2.17e-33 | 122 |
Msa0413960 | MtrunA17_Chr8g0371821 | 29.155 | 367 | 229 | 14 | 10 | 366 | 3 | 348 | 6.31e-33 | 129 |
Msa0413960 | MtrunA17_Chr3g0141851 | 24.221 | 417 | 259 | 11 | 18 | 412 | 20 | 401 | 3.88e-32 | 127 |
Msa0413960 | MtrunA17_Chr7g0273781 | 29.262 | 393 | 250 | 13 | 17 | 401 | 50 | 422 | 7.48e-32 | 127 |
Msa0413960 | MtrunA17_Chr4g0001861 | 27.206 | 408 | 250 | 17 | 10 | 396 | 3 | 384 | 1.57e-31 | 125 |
Msa0413960 | MtrunA17_Chr2g0334001 | 25.056 | 443 | 280 | 17 | 10 | 424 | 3 | 421 | 2.73e-31 | 124 |
Msa0413960 | MtrunA17_Chr1g0165711 | 29.042 | 334 | 200 | 12 | 17 | 338 | 16 | 324 | 5.47e-31 | 123 |
Msa0413960 | MtrunA17_Chr7g0273791 | 28.426 | 394 | 252 | 13 | 17 | 401 | 17 | 389 | 2.49e-30 | 122 |
Msa0413960 | MtrunA17_Chr7g0273731 | 26.726 | 449 | 296 | 12 | 17 | 457 | 100 | 523 | 5.74e-30 | 122 |
Msa0413960 | MtrunA17_Chr3g0087401 | 25.547 | 411 | 251 | 15 | 20 | 396 | 12 | 401 | 2.84e-29 | 119 |
Msa0413960 | MtrunA17_Chr7g0253541 | 27.143 | 420 | 264 | 19 | 18 | 409 | 12 | 417 | 8.22e-26 | 109 |
Msa0413960 | MtrunA17_Chr7g0253501 | 26.764 | 411 | 226 | 21 | 44 | 406 | 34 | 417 | 2.25e-24 | 105 |
Msa0413960 | MtrunA17_Chr4g0054081 | 29.866 | 298 | 168 | 15 | 68 | 344 | 65 | 342 | 2.14e-23 | 102 |
Msa0413960 | MtrunA17_Chr4g0072041 | 30.169 | 295 | 168 | 14 | 68 | 343 | 70 | 345 | 4.05e-23 | 101 |
Msa0413960 | MtrunA17_Chr7g0253531 | 27.062 | 388 | 215 | 22 | 56 | 397 | 45 | 410 | 2.45e-21 | 96.3 |
Msa0413960 | MtrunA17_Chr2g0311401 | 23.667 | 300 | 194 | 10 | 149 | 425 | 5 | 292 | 2.84e-18 | 85.1 |
Msa0413960 | MtrunA17_Chr6g0471971 | 29.947 | 187 | 123 | 3 | 167 | 351 | 3 | 183 | 6.83e-18 | 82.4 |
Msa0413960 | MtrunA17_Chr3g0134041 | 27.336 | 289 | 166 | 11 | 68 | 334 | 66 | 332 | 1.77e-17 | 84.7 |
Msa0413960 | MtrunA17_Chr3g0134121 | 27.338 | 278 | 178 | 10 | 69 | 334 | 70 | 335 | 3.88e-17 | 83.6 |
Msa0413960 | MtrunA17_Chr3g0134091 | 26.389 | 288 | 170 | 10 | 68 | 334 | 68 | 334 | 4.09e-17 | 83.6 |
Msa0413960 | MtrunA17_Chr8g0359251 | 25.926 | 270 | 182 | 7 | 68 | 329 | 63 | 322 | 5.11e-17 | 83.2 |
Msa0413960 | MtrunA17_Chr3g0134071 | 29.032 | 279 | 166 | 11 | 69 | 329 | 71 | 335 | 6.56e-17 | 83.2 |
Msa0413960 | MtrunA17_Chr4g0010331 | 27.899 | 276 | 177 | 10 | 68 | 332 | 55 | 319 | 8.98e-17 | 82.4 |
Msa0413960 | MtrunA17_Chr3g0134061 | 26.736 | 288 | 177 | 10 | 69 | 334 | 69 | 344 | 1.15e-16 | 82.0 |
Msa0413960 | MtrunA17_Chr4g0010351 | 27.798 | 277 | 180 | 8 | 68 | 331 | 55 | 324 | 1.72e-16 | 80.9 |
Msa0413960 | MtrunA17_Chr4g0010361 | 27.957 | 279 | 177 | 10 | 68 | 331 | 55 | 324 | 3.97e-16 | 80.5 |
Msa0413960 | MtrunA17_Chr4g0010311 | 27.451 | 306 | 185 | 14 | 68 | 352 | 55 | 344 | 4.41e-16 | 80.1 |
Msa0413960 | MtrunA17_Chr5g0442721 | 24.688 | 401 | 259 | 14 | 54 | 426 | 55 | 440 | 7.93e-16 | 79.7 |
Msa0413960 | MtrunA17_Chr4g0010381 | 26.429 | 280 | 189 | 8 | 63 | 331 | 50 | 323 | 8.59e-16 | 79.3 |
Msa0413960 | MtrunA17_Chr3g0134111 | 26.923 | 286 | 175 | 12 | 68 | 334 | 65 | 335 | 8.65e-16 | 79.3 |
Msa0413960 | MtrunA17_Chr3g0095731 | 24.204 | 314 | 213 | 10 | 68 | 364 | 65 | 370 | 4.08e-15 | 77.4 |
Msa0413960 | MtrunA17_Chr3g0125001 | 26.354 | 277 | 176 | 9 | 68 | 331 | 55 | 316 | 2.00e-14 | 75.1 |
Msa0413960 | MtrunA17_Chr8g0354371 | 25.092 | 271 | 181 | 8 | 68 | 329 | 64 | 321 | 5.53e-14 | 73.6 |
Msa0413960 | MtrunA17_Chr5g0408911 | 22.485 | 338 | 239 | 9 | 68 | 396 | 74 | 397 | 7.70e-14 | 73.6 |
Msa0413960 | MtrunA17_Chr7g0274021 | 24.370 | 357 | 232 | 15 | 31 | 374 | 30 | 361 | 8.37e-14 | 73.2 |
Msa0413960 | MtrunA17_Chr3g0087221 | 26.804 | 291 | 172 | 12 | 68 | 332 | 55 | 330 | 1.96e-13 | 72.0 |
Msa0413960 | MtrunA17_Chr3g0123061 | 23.414 | 457 | 295 | 19 | 8 | 457 | 3 | 411 | 2.65e-13 | 71.6 |
Msa0413960 | MtrunA17_Chr3g0095721 | 23.885 | 314 | 211 | 9 | 68 | 364 | 72 | 374 | 3.38e-13 | 71.2 |
Msa0413960 | MtrunA17_Chr5g0442701 | 25.309 | 324 | 195 | 11 | 68 | 364 | 66 | 369 | 3.48e-13 | 71.2 |
Msa0413960 | MtrunA17_Chr5g0442691 | 25.237 | 317 | 200 | 10 | 68 | 362 | 89 | 390 | 6.16e-13 | 70.9 |
Msa0413960 | MtrunA17_Chr7g0224131 | 26.642 | 274 | 183 | 8 | 68 | 329 | 55 | 322 | 1.54e-12 | 69.3 |
Msa0413960 | MtrunA17_Chr7g0219291 | 22.740 | 365 | 245 | 11 | 69 | 404 | 417 | 773 | 1.41e-11 | 67.0 |
Msa0413960 | MtrunA17_Chr8g0374641 | 24.727 | 275 | 183 | 9 | 68 | 329 | 59 | 322 | 2.81e-11 | 65.5 |
Msa0413960 | MtrunA17_Chr1g0165741 | 35.897 | 117 | 65 | 4 | 4 | 119 | 3 | 110 | 6.44e-11 | 60.5 |
Msa0413960 | MtrunA17_Chr6g0471381 | 29.730 | 148 | 97 | 4 | 254 | 401 | 56 | 196 | 7.32e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0413960 | AT5G07080.1 | 38.793 | 464 | 243 | 16 | 8 | 457 | 12 | 448 | 2.03e-94 | 293 |
Msa0413960 | AT2G25150.1 | 37.365 | 463 | 262 | 12 | 8 | 460 | 11 | 455 | 3.46e-90 | 282 |
Msa0413960 | AT2G23510.1 | 37.251 | 451 | 253 | 14 | 17 | 457 | 20 | 450 | 1.98e-88 | 277 |
Msa0413960 | AT3G47170.1 | 35.169 | 472 | 264 | 13 | 10 | 457 | 12 | 465 | 6.18e-82 | 261 |
Msa0413960 | AT1G28680.1 | 35.886 | 457 | 263 | 14 | 10 | 455 | 4 | 441 | 1.10e-79 | 254 |
Msa0413960 | AT1G28680.2 | 36.314 | 369 | 209 | 12 | 10 | 367 | 4 | 357 | 7.05e-67 | 219 |
Msa0413960 | AT3G62160.1 | 30.808 | 396 | 239 | 13 | 16 | 405 | 11 | 377 | 5.17e-50 | 176 |
Msa0413960 | AT5G41040.2 | 29.412 | 459 | 275 | 18 | 8 | 453 | 15 | 437 | 6.69e-50 | 176 |
Msa0413960 | AT5G41040.1 | 29.412 | 459 | 275 | 18 | 8 | 453 | 31 | 453 | 8.40e-50 | 176 |
Msa0413960 | AT3G48720.1 | 29.490 | 451 | 271 | 20 | 13 | 452 | 12 | 426 | 1.30e-43 | 159 |
Msa0413960 | AT3G03480.1 | 27.991 | 468 | 285 | 15 | 7 | 457 | 16 | 448 | 4.98e-42 | 155 |
Msa0413960 | AT5G17540.1 | 27.521 | 476 | 278 | 17 | 7 | 457 | 6 | 439 | 3.15e-38 | 145 |
Msa0413960 | AT5G63560.1 | 29.581 | 453 | 262 | 22 | 13 | 451 | 12 | 421 | 1.35e-37 | 142 |
Msa0413960 | AT5G48930.1 | 27.073 | 410 | 252 | 15 | 8 | 396 | 1 | 384 | 1.99e-33 | 131 |
Msa0413960 | AT2G40230.1 | 27.187 | 423 | 257 | 16 | 10 | 411 | 5 | 397 | 8.11e-33 | 129 |
Msa0413960 | AT1G27620.1 | 25.951 | 447 | 263 | 14 | 17 | 443 | 16 | 414 | 8.45e-32 | 127 |
Msa0413960 | AT1G03390.1 | 25.117 | 426 | 286 | 15 | 20 | 432 | 32 | 437 | 4.99e-26 | 110 |
Msa0413960 | AT1G65450.1 | 26.582 | 474 | 279 | 19 | 8 | 455 | 16 | 446 | 7.74e-26 | 109 |
Msa0413960 | AT2G19070.1 | 29.712 | 313 | 190 | 14 | 67 | 362 | 57 | 356 | 3.05e-22 | 99.4 |
Msa0413960 | AT4G31910.1 | 25.359 | 418 | 242 | 16 | 28 | 405 | 29 | 416 | 5.02e-21 | 95.9 |
Msa0413960 | AT4G15390.1 | 24.324 | 481 | 294 | 20 | 4 | 459 | 2 | 437 | 1.65e-18 | 88.2 |
Msa0413960 | AT4G15390.2 | 24.324 | 481 | 294 | 20 | 4 | 459 | 2 | 437 | 1.65e-18 | 88.2 |
Msa0413960 | AT1G24430.1 | 24.505 | 404 | 253 | 15 | 69 | 461 | 63 | 425 | 7.98e-17 | 82.8 |
Msa0413960 | AT1G32910.1 | 24.848 | 330 | 203 | 10 | 68 | 375 | 65 | 371 | 1.12e-16 | 82.4 |
Msa0413960 | AT5G07870.1 | 27.402 | 281 | 177 | 10 | 68 | 331 | 72 | 342 | 1.24e-16 | 82.4 |
Msa0413960 | AT5G07860.1 | 25.000 | 264 | 163 | 9 | 68 | 315 | 72 | 316 | 7.87e-16 | 80.1 |
Msa0413960 | AT5G47950.1 | 33.163 | 196 | 99 | 10 | 7 | 191 | 3 | 177 | 2.32e-14 | 75.1 |
Msa0413960 | AT3G30280.1 | 23.517 | 489 | 285 | 23 | 7 | 461 | 3 | 436 | 7.46e-14 | 73.9 |
Msa0413960 | AT5G23940.1 | 27.203 | 261 | 170 | 11 | 68 | 315 | 65 | 318 | 1.76e-13 | 72.8 |
Msa0413960 | AT3G26040.1 | 22.772 | 303 | 196 | 11 | 56 | 346 | 44 | 320 | 1.62e-12 | 69.7 |
Msa0413960 | AT5G07850.1 | 25.387 | 323 | 192 | 14 | 68 | 365 | 70 | 368 | 2.56e-12 | 68.9 |
Msa0413960 | AT3G50280.1 | 22.129 | 357 | 249 | 11 | 68 | 409 | 59 | 401 | 6.11e-12 | 67.8 |
Msa0413960 | AT5G16410.1 | 23.006 | 326 | 210 | 10 | 68 | 376 | 91 | 392 | 9.69e-12 | 67.4 |
Msa0413960 | AT5G23970.1 | 22.979 | 470 | 293 | 22 | 8 | 459 | 1 | 419 | 1.42e-11 | 66.6 |
Find 103 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTTACCTAATGGTTATTA+TGG | 0.102136 | 3_2:-58894266 | Msa0413960:CDS |
CATCTTTCATTTCAAGCTTT+AGG | 0.193928 | 3_2:+58895840 | None:intergenic |
CTGACAGAGTGGAAACATTT+AGG | 0.237890 | 3_2:-58894047 | Msa0413960:CDS |
TCATCATTGTCAAATTTATT+AGG | 0.246582 | 3_2:+58893921 | None:intergenic |
ATCTTTCATTTCAAGCTTTA+GGG | 0.261824 | 3_2:+58895841 | None:intergenic |
CCTTTCTTCTGTTAGTTACT+TGG | 0.266578 | 3_2:-58894831 | Msa0413960:CDS |
GCAACAGAATCTTTGTTCAT+AGG | 0.267156 | 3_2:+58894539 | None:intergenic |
CTTGATGGAGATGTAGATTT+TGG | 0.274005 | 3_2:-58894020 | Msa0413960:CDS |
AACAATTCATGATTCTAATT+CGG | 0.274186 | 3_2:-58895702 | Msa0413960:CDS |
TCTTTGTTCATAGGGCATTC+TGG | 0.275053 | 3_2:+58894548 | None:intergenic |
TTAACCCCTCCTTTCATTGA+TGG | 0.282796 | 3_2:+58893897 | None:intergenic |
AAATTATGGTGTTCCATTCT+TGG | 0.284915 | 3_2:-58894873 | Msa0413960:CDS |
ACAATTCATGATTCTAATTC+GGG | 0.288860 | 3_2:-58895701 | Msa0413960:CDS |
TGGGAAAGAGAGAGACTTAT+TGG | 0.299884 | 3_2:-58894593 | Msa0413960:CDS |
TTCAATTTCCTCCTTGAACT+TGG | 0.303476 | 3_2:+58893842 | None:intergenic |
AATCCTAATGCAGAAAATTA+TGG | 0.321826 | 3_2:-58894887 | Msa0413960:CDS |
AACTTACCCTTTGGTGTTCA+AGG | 0.353325 | 3_2:-58894756 | Msa0413960:CDS |
CTTTACCTAATGGTTATTAT+GGG | 0.357702 | 3_2:-58894265 | Msa0413960:CDS |
TCCCCTTGCAAGTTCGATAA+TGG | 0.359679 | 3_2:+58894643 | None:intergenic |
TTCATAGGGCATTCTGGAAA+TGG | 0.366658 | 3_2:+58894554 | None:intergenic |
AACTTGGGCATGGCAGCAAC+AGG | 0.371483 | 3_2:+58893858 | None:intergenic |
GTGTAGTCTTGATTCATAAA+AGG | 0.374755 | 3_2:+58894509 | None:intergenic |
CACAGAAATTGCAAAGCATT+TGG | 0.379681 | 3_2:-58894798 | Msa0413960:CDS |
TGAAGGAAAGTGGAAATATA+AGG | 0.398595 | 3_2:-58894418 | Msa0413960:CDS |
TTAGCAATTGCTTCCAAGAA+TGG | 0.403315 | 3_2:+58894860 | None:intergenic |
GGAGGTTTCACAATCGGAAT+GGG | 0.409540 | 3_2:-58894716 | Msa0413960:CDS |
ATGCAACTTGTTTGCGTCCA+TGG | 0.416476 | 3_2:-58893964 | Msa0413960:CDS |
GCACTATTTGCCACAATTCA+AGG | 0.421226 | 3_2:+58893645 | None:intergenic |
GAAGTTGCCTTAGTGTTTCA+AGG | 0.421566 | 3_2:-58893775 | Msa0413960:three_prime_UTR |
ACAACTTTCGAAGCGATTGC+AGG | 0.428496 | 3_2:-58894392 | Msa0413960:CDS |
CAACAGAATCTTTGTTCATA+GGG | 0.432267 | 3_2:+58894540 | None:intergenic |
TGCTGCCATGCCCAAGTTCA+AGG | 0.433774 | 3_2:-58893853 | Msa0413960:CDS |
TGAAGACAAAACTTACCCTT+TGG | 0.442212 | 3_2:-58894765 | Msa0413960:CDS |
GGCAAATAGTGCATTGTGAT+TGG | 0.444855 | 3_2:-58893634 | Msa0413960:three_prime_UTR |
TCAATTTCCTCCTTGAACTT+GGG | 0.445520 | 3_2:+58893843 | None:intergenic |
GCTTAAGTTGAGTTTGATGA+AGG | 0.452085 | 3_2:-58894435 | Msa0413960:CDS |
GAATTCCCATAATAACCATT+AGG | 0.456288 | 3_2:+58894260 | None:intergenic |
CGTTGCGGAGGTTTCACAAT+CGG | 0.459106 | 3_2:-58894722 | Msa0413960:CDS |
GTATGAAGAAGATGATGTAT+TGG | 0.479557 | 3_2:+58893379 | None:intergenic |
CCAAGTAACTAACAGAAGAA+AGG | 0.486102 | 3_2:+58894831 | None:intergenic |
TTGAGTTTGATGAAGGAAAG+TGG | 0.489083 | 3_2:-58894428 | Msa0413960:CDS |
TTGTCACCTTGAACACCAAA+GGG | 0.494129 | 3_2:+58894750 | None:intergenic |
CGAATTATAACGAGGAATCA+AGG | 0.497566 | 3_2:-58894097 | Msa0413960:CDS |
CTCAAACTGTTCATGTATAC+CGG | 0.499140 | 3_2:-58895730 | Msa0413960:CDS |
CCATAATAACCATTAGGTAA+AGG | 0.501347 | 3_2:+58894266 | None:intergenic |
TGGTATTAGACGCAAATTGA+AGG | 0.506384 | 3_2:-58894297 | Msa0413960:CDS |
CAAGTAACTAACAGAAGAAA+GGG | 0.509622 | 3_2:+58894832 | None:intergenic |
ATTCAAAGAAGCACTTTCAA+AGG | 0.519773 | 3_2:-58895660 | Msa0413960:CDS |
AATCATGAATTGTTGATGAC+CGG | 0.519842 | 3_2:+58895711 | None:intergenic |
ATGCTTTGCAATTTCTGTGT+CGG | 0.522721 | 3_2:+58894802 | None:intergenic |
AGCCACACCTCCTTGAATTG+TGG | 0.526100 | 3_2:-58893655 | Msa0413960:three_prime_UTR |
TCTACGTCTTGCAGGTAGAA+TGG | 0.526428 | 3_2:-58894948 | Msa0413960:intron |
CGGAGGTTTCACAATCGGAA+TGG | 0.531324 | 3_2:-58894717 | Msa0413960:CDS |
TTCCTCCTTGAACTTGGGCA+TGG | 0.531730 | 3_2:+58893848 | None:intergenic |
GCAAACAAGTTGCATGGTGC+TGG | 0.535676 | 3_2:+58893972 | None:intergenic |
TTTGTCACCTTGAACACCAA+AGG | 0.540211 | 3_2:+58894749 | None:intergenic |
TCATTGTCAAATTTATTAGG+AGG | 0.540817 | 3_2:+58893924 | None:intergenic |
ATGGTGAAACATGCTGATGA+TGG | 0.543171 | 3_2:-58894929 | Msa0413960:CDS |
AAGCCATTATCGAACTTGCA+AGG | 0.551949 | 3_2:-58894646 | Msa0413960:CDS |
GAATCAAGGATGCTAAGTAC+TGG | 0.553010 | 3_2:-58894083 | Msa0413960:CDS |
AGCCATTATCGAACTTGCAA+GGG | 0.556732 | 3_2:-58894645 | Msa0413960:CDS |
ATGATCCATCAATGAAAGGA+GGG | 0.556848 | 3_2:-58893902 | Msa0413960:CDS |
GCTAAGTACTGGTGCAGTAA+CGG | 0.563324 | 3_2:-58894072 | Msa0413960:CDS |
TCGAGGGTGAAATGATAGAA+AGG | 0.567110 | 3_2:-58894457 | Msa0413960:CDS |
GGTAGCTGTCTTATAAGCCA+TGG | 0.571124 | 3_2:+58895862 | None:intergenic |
GAAAGTGAAAGAATACAAGA+AGG | 0.574882 | 3_2:+58895788 | None:intergenic |
AATGATGATCCATCAATGAA+AGG | 0.575055 | 3_2:-58893906 | Msa0413960:CDS |
AAGTTAATAATTTCATAGAG+TGG | 0.575699 | 3_2:+58894188 | None:intergenic |
AAGCGATTGCAGGTTATGTG+TGG | 0.585990 | 3_2:-58894382 | Msa0413960:CDS |
TGCCACAATTCAAGGAGGTG+TGG | 0.592195 | 3_2:+58893653 | None:intergenic |
GAGGTTTCACAATCGGAATG+GGG | 0.593146 | 3_2:-58894715 | Msa0413960:CDS |
TCCCACACAGGTATCGTCGA+GGG | 0.595299 | 3_2:+58894611 | None:intergenic |
AAACCTAGTATACCTGCAAG+AGG | 0.599532 | 3_2:+58895620 | None:intergenic |
GCGTCTAATACCAGCTACAA+TGG | 0.601539 | 3_2:+58894307 | None:intergenic |
GTGACAAAATTTCGTTGCGG+AGG | 0.602288 | 3_2:-58894734 | Msa0413960:CDS |
GTGTTGCACGCTATCTGTGA+CGG | 0.602692 | 3_2:-58894692 | Msa0413960:CDS |
TAGTAGTGAAGTGCTTGTAA+TGG | 0.608350 | 3_2:-58893434 | Msa0413960:three_prime_UTR |
AAGTTAGCGAGCTCAATGAA+AGG | 0.613658 | 3_2:-58894211 | Msa0413960:CDS |
AGGTTTCACAATCGGAATGG+GGG | 0.619066 | 3_2:-58894714 | Msa0413960:CDS |
ATACATGAACAGTTTGAGCA+AGG | 0.620162 | 3_2:+58895735 | None:intergenic |
AACCCTCGACGATACCTGTG+TGG | 0.622732 | 3_2:-58894613 | Msa0413960:CDS |
TTCCCACACAGGTATCGTCG+AGG | 0.623361 | 3_2:+58894610 | None:intergenic |
CACGCTATCTGTGACGGAGT+TGG | 0.625478 | 3_2:-58894686 | Msa0413960:CDS |
GATGATCCATCAATGAAAGG+AGG | 0.631222 | 3_2:-58893903 | Msa0413960:CDS |
GCCATTATCGAACTTGCAAG+GGG | 0.631450 | 3_2:-58894644 | Msa0413960:CDS |
GCTTCTTTGAATACATGACA+AGG | 0.632259 | 3_2:+58895671 | None:intergenic |
AGTCTCTCTCTTTCCCACAC+AGG | 0.635132 | 3_2:+58894599 | None:intergenic |
GCCTTAAAACTTAACAACAA+TGG | 0.636178 | 3_2:-58894344 | Msa0413960:CDS |
ATGGACGCAAACAAGTTGCA+TGG | 0.637526 | 3_2:+58893966 | None:intergenic |
CGATTGCAGGTTATGTGTGG+AGG | 0.638354 | 3_2:-58894379 | Msa0413960:CDS |
ACAGTGCTGACCATTGTAGC+TGG | 0.644789 | 3_2:-58894317 | Msa0413960:CDS |
TGATCCATCAATGAAAGGAG+GGG | 0.653576 | 3_2:-58893901 | Msa0413960:CDS |
TGTTTATGAGAAATGTGGCA+AGG | 0.654163 | 3_2:+58895889 | None:intergenic |
CAGTAACGGTTCTGACAGAG+TGG | 0.654388 | 3_2:-58894058 | Msa0413960:CDS |
ACCCTCGACGATACCTGTGT+GGG | 0.660118 | 3_2:-58894612 | Msa0413960:CDS |
ACTTGGGCATGGCAGCAACA+GGG | 0.669220 | 3_2:+58893859 | None:intergenic |
GAAAATGTTTATGAGAAATG+TGG | 0.670028 | 3_2:+58895884 | None:intergenic |
CTTCTTTGAATACATGACAA+GGG | 0.672661 | 3_2:+58895672 | None:intergenic |
AAGGCAACTTCAACTGAACG+TGG | 0.681677 | 3_2:+58893787 | None:intergenic |
CTATTTGCCACAATTCAAGG+AGG | 0.741038 | 3_2:+58893648 | None:intergenic |
TGCCATGCCCAAGTTCAAGG+AGG | 0.747229 | 3_2:-58893850 | Msa0413960:CDS |
AAGGTGACAAAATTTCGTTG+CGG | 0.748989 | 3_2:-58894737 | Msa0413960:CDS |
TTTGGAGACGAATTATAACG+AGG | 0.749542 | 3_2:-58894105 | Msa0413960:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAAATTTTAATAAAAATTT+TGG | - | chr3_2:58893872-58893891 | Msa0413960:CDS | 0.0% |
!!! | TAAATTTTAATAAAAATTTT+GGG | - | chr3_2:58893873-58893892 | Msa0413960:CDS | 0.0% |
!! | TTATAAGAAAAAAAATGATT+AGG | + | chr3_2:58893856-58893875 | None:intergenic | 10.0% |
!!! | TGAAATTTTGAATATTTATA+AGG | + | chr3_2:58893942-58893961 | None:intergenic | 10.0% |
!!! | ATATTGACATAAAATTTTAA+AGG | + | chr3_2:58894000-58894019 | None:intergenic | 10.0% |
!! | AAACATTTGTATTTAATGAA+AGG | + | chr3_2:58893741-58893760 | None:intergenic | 15.0% |
!!! | AAATTAGTGTTGTTAAAATA+TGG | - | chr3_2:58893762-58893781 | Msa0413960:three_prime_UTR | 15.0% |
!! | TCTACCAAAAAAAATAAATA+TGG | - | chr3_2:58893794-58893813 | Msa0413960:three_prime_UTR | 15.0% |
!!! | TAATATAAACCTTTAAAAGA+GGG | - | chr3_2:58893824-58893843 | Msa0413960:CDS | 15.0% |
!!! | GAAATATATTTTTTTAGATG+AGG | - | chr3_2:58893899-58893918 | Msa0413960:CDS | 15.0% |
!!! | AAAATTTATGTTAGCATTTT+CGG | - | chr3_2:58894064-58894083 | Msa0413960:CDS | 15.0% |
!!! | AAATGTGATTTTATTTTGTA+AGG | - | chr3_2:58894124-58894143 | Msa0413960:CDS | 15.0% |
!!! | AAAAAAGACTATCATATTTT+GGG | + | chr3_2:58894199-58894218 | None:intergenic | 15.0% |
!!! | AAAAAAAGACTATCATATTT+TGG | + | chr3_2:58894200-58894219 | None:intergenic | 15.0% |
!!! | TGATAGTCTTTTTTTTTTTT+TGG | - | chr3_2:58894205-58894224 | Msa0413960:CDS | 15.0% |
!! | TTTCATAAAATATTCAAAAG+TGG | + | chr3_2:58894293-58894312 | None:intergenic | 15.0% |
!! | AACAATTCATGATTCTAATT+CGG | - | chr3_2:58893619-58893638 | Msa0413960:three_prime_UTR | 20.0% |
!!! | TTATTTTTTTTGGTAGATAG+AGG | + | chr3_2:58893791-58893810 | None:intergenic | 20.0% |
!!! | GCATCCATATTTATTTTTTT+TGG | + | chr3_2:58893801-58893820 | None:intergenic | 20.0% |
!!! | CTTTTAAAGGTTTATATTAG+AGG | + | chr3_2:58893823-58893842 | None:intergenic | 20.0% |
!!! | CTAATATAAACCTTTAAAAG+AGG | - | chr3_2:58893823-58893842 | Msa0413960:CDS | 20.0% |
!!! | TACGAATGGAAAATTTTAAA+AGG | + | chr3_2:58894030-58894049 | None:intergenic | 20.0% |
!!! | ATGCTAACATAAATTTTACA+AGG | + | chr3_2:58894061-58894080 | None:intergenic | 20.0% |
!!! | ATTTTCCTTTAGCATTTTTA+AGG | + | chr3_2:58894091-58894110 | None:intergenic | 20.0% |
!!! | TGCAATTTTTCGTAAAATAA+TGG | + | chr3_2:58894265-58894284 | None:intergenic | 20.0% |
!!! | TATTTTACGAAAAATTGCAA+TGG | - | chr3_2:58894266-58894285 | Msa0413960:CDS | 20.0% |
!! | TATTAGAATGTCCATAAAAA+TGG | - | chr3_2:58894318-58894337 | Msa0413960:CDS | 20.0% |
!!! | TTCCATAAAATCCATTTTTA+TGG | + | chr3_2:58894332-58894351 | None:intergenic | 20.0% |
!! | AAGTTAATAATTTCATAGAG+TGG | + | chr3_2:58895136-58895155 | None:intergenic | 20.0% |
!!! | TGAATTTTTGATAAAATCAG+TGG | + | chr3_2:58895188-58895207 | None:intergenic | 20.0% |
!! | TCATCATTGTCAAATTTATT+AGG | + | chr3_2:58895403-58895422 | None:intergenic | 20.0% |
! | GAAAATGTTTATGAGAAATG+TGG | + | chr3_2:58893440-58893459 | None:intergenic | 25.0% |
!! | TTTCTCATAAACATTTTCCA+TGG | - | chr3_2:58893442-58893461 | Msa0413960:three_prime_UTR | 25.0% |
! | ATCTTTCATTTCAAGCTTTA+GGG | + | chr3_2:58893483-58893502 | None:intergenic | 25.0% |
! | ACAATTCATGATTCTAATTC+GGG | - | chr3_2:58893620-58893639 | Msa0413960:three_prime_UTR | 25.0% |
!! | TTTTATTATTATCCTCTTGC+AGG | - | chr3_2:58893689-58893708 | Msa0413960:three_prime_UTR | 25.0% |
!! | GATGAGGTTAGATATATTTT+TGG | - | chr3_2:58893915-58893934 | Msa0413960:CDS | 25.0% |
!!! | GTCCATAAAAATGGATTTTA+TGG | - | chr3_2:58894327-58894346 | Msa0413960:CDS | 25.0% |
! | AATCCTAATGCAGAAAATTA+TGG | - | chr3_2:58894434-58894453 | Msa0413960:CDS | 25.0% |
!!! | ACCATTGTTGTTAAGTTTTA+AGG | + | chr3_2:58894981-58895000 | None:intergenic | 25.0% |
! | CTTTACCTAATGGTTATTAT+GGG | - | chr3_2:58895056-58895075 | Msa0413960:intron | 25.0% |
!! | ATTTTTGATAAAATCAGTGG+TGG | + | chr3_2:58895185-58895204 | None:intergenic | 25.0% |
! | CAAAAATTCAATCAACACTT+TGG | - | chr3_2:58895198-58895217 | Msa0413960:intron | 25.0% |
!!! | AAACATTTAGGTTTTCTTGA+TGG | - | chr3_2:58895286-58895305 | Msa0413960:intron | 25.0% |
! | TCATTGTCAAATTTATTAGG+AGG | + | chr3_2:58895400-58895419 | None:intergenic | 25.0% |
!! | GTGTCAAGAGAAATAATTTT+AGG | - | chr3_2:58895838-58895857 | Msa0413960:CDS | 25.0% |
CATCTTTCATTTCAAGCTTT+AGG | + | chr3_2:58893484-58893503 | None:intergenic | 30.0% | |
!! | CAAGAAGGAATTGATTTTGA+TGG | + | chr3_2:58893521-58893540 | None:intergenic | 30.0% |
GAAAGTGAAAGAATACAAGA+AGG | + | chr3_2:58893536-58893555 | None:intergenic | 30.0% | |
!! | AATCATGAATTGTTGATGAC+CGG | + | chr3_2:58893613-58893632 | None:intergenic | 30.0% |
CTTCTTTGAATACATGACAA+GGG | + | chr3_2:58893652-58893671 | None:intergenic | 30.0% | |
!! | ATTCAAAGAAGCACTTTCAA+AGG | - | chr3_2:58893661-58893680 | Msa0413960:three_prime_UTR | 30.0% |
ACAAGGACAAAAAATACGAA+TGG | + | chr3_2:58894044-58894063 | None:intergenic | 30.0% | |
! | ACACCATAATTTTCTGCATT+AGG | + | chr3_2:58894440-58894459 | None:intergenic | 30.0% |
AAATTATGGTGTTCCATTCT+TGG | - | chr3_2:58894448-58894467 | Msa0413960:CDS | 30.0% | |
CAAGTAACTAACAGAAGAAA+GGG | + | chr3_2:58894492-58894511 | None:intergenic | 30.0% | |
CAACAGAATCTTTGTTCATA+GGG | + | chr3_2:58894784-58894803 | None:intergenic | 30.0% | |
! | GTGTAGTCTTGATTCATAAA+AGG | + | chr3_2:58894815-58894834 | None:intergenic | 30.0% |
!!! | ACAATATTGTTTTAACGTCG+AGG | - | chr3_2:58894847-58894866 | Msa0413960:CDS | 30.0% |
!!! | CAATATTGTTTTAACGTCGA+GGG | - | chr3_2:58894848-58894867 | Msa0413960:CDS | 30.0% |
TGAAGGAAAGTGGAAATATA+AGG | - | chr3_2:58894903-58894922 | Msa0413960:CDS | 30.0% | |
GCCTTAAAACTTAACAACAA+TGG | - | chr3_2:58894977-58894996 | Msa0413960:intron | 30.0% | |
! | GATTTTGAACCTTTACCTAA+TGG | - | chr3_2:58895046-58895065 | Msa0413960:intron | 30.0% |
CCATAATAACCATTAGGTAA+AGG | + | chr3_2:58895058-58895077 | None:intergenic | 30.0% | |
CCTTTACCTAATGGTTATTA+TGG | - | chr3_2:58895055-58895074 | Msa0413960:intron | 30.0% | |
GAATTCCCATAATAACCATT+AGG | + | chr3_2:58895064-58895083 | None:intergenic | 30.0% | |
TGTAAAAATGCTCATTTCCA+TGG | + | chr3_2:58895377-58895396 | None:intergenic | 30.0% | |
AATGATGATCCATCAATGAA+AGG | - | chr3_2:58895415-58895434 | Msa0413960:intron | 30.0% | |
!!! | AGAATTTTTCAAGACACATG+TGG | - | chr3_2:58895600-58895619 | Msa0413960:intron | 30.0% |
TGTTTATGAGAAATGTGGCA+AGG | + | chr3_2:58893435-58893454 | None:intergenic | 35.0% | |
ATACATGAACAGTTTGAGCA+AGG | + | chr3_2:58893589-58893608 | None:intergenic | 35.0% | |
CTCAAACTGTTCATGTATAC+CGG | - | chr3_2:58893591-58893610 | Msa0413960:three_prime_UTR | 35.0% | |
GCTTCTTTGAATACATGACA+AGG | + | chr3_2:58893653-58893672 | None:intergenic | 35.0% | |
TCGGTCCTTAAAAATGCTAA+AGG | - | chr3_2:58894083-58894102 | Msa0413960:CDS | 35.0% | |
TTAGCAATTGCTTCCAAGAA+TGG | + | chr3_2:58894464-58894483 | None:intergenic | 35.0% | |
CCAAGTAACTAACAGAAGAA+AGG | + | chr3_2:58894493-58894512 | None:intergenic | 35.0% | |
CCTTTCTTCTGTTAGTTACT+TGG | - | chr3_2:58894490-58894509 | Msa0413960:CDS | 35.0% | |
ATGCTTTGCAATTTCTGTGT+CGG | + | chr3_2:58894522-58894541 | None:intergenic | 35.0% | |
! | CACAGAAATTGCAAAGCATT+TGG | - | chr3_2:58894523-58894542 | Msa0413960:CDS | 35.0% |
TGAAGACAAAACTTACCCTT+TGG | - | chr3_2:58894556-58894575 | Msa0413960:CDS | 35.0% | |
AAGGTGACAAAATTTCGTTG+CGG | - | chr3_2:58894584-58894603 | Msa0413960:CDS | 35.0% | |
GCAACAGAATCTTTGTTCAT+AGG | + | chr3_2:58894785-58894804 | None:intergenic | 35.0% | |
!! | GCTTAAGTTGAGTTTGATGA+AGG | - | chr3_2:58894886-58894905 | Msa0413960:CDS | 35.0% |
TTGAGTTTGATGAAGGAAAG+TGG | - | chr3_2:58894893-58894912 | Msa0413960:CDS | 35.0% | |
TGGTATTAGACGCAAATTGA+AGG | - | chr3_2:58895024-58895043 | Msa0413960:intron | 35.0% | |
TTTGGAGACGAATTATAACG+AGG | - | chr3_2:58895216-58895235 | Msa0413960:intron | 35.0% | |
CGAATTATAACGAGGAATCA+AGG | - | chr3_2:58895224-58895243 | Msa0413960:intron | 35.0% | |
! | CTTGATGGAGATGTAGATTT+TGG | - | chr3_2:58895301-58895320 | Msa0413960:intron | 35.0% |
!! | ATGGAGATGTAGATTTTGGT+GGG | - | chr3_2:58895305-58895324 | Msa0413960:intron | 35.0% |
ATGATCCATCAATGAAAGGA+GGG | - | chr3_2:58895419-58895438 | Msa0413960:intron | 35.0% | |
TCAATTTCCTCCTTGAACTT+GGG | + | chr3_2:58895481-58895500 | None:intergenic | 35.0% | |
TTCAATTTCCTCCTTGAACT+TGG | + | chr3_2:58895482-58895501 | None:intergenic | 35.0% | |
! | GCATTTTCCTTGAAACACTA+AGG | + | chr3_2:58895556-58895575 | None:intergenic | 35.0% |
! | TAGTAGTGAAGTGCTTGTAA+TGG | - | chr3_2:58895887-58895906 | Msa0413960:five_prime_UTR | 35.0% |
TATCCTCTTGCAGGTATACT+AGG | - | chr3_2:58893698-58893717 | Msa0413960:three_prime_UTR | 40.0% | |
AAACCTAGTATACCTGCAAG+AGG | + | chr3_2:58893704-58893723 | None:intergenic | 40.0% | |
! | AGGCATACACCCTCTTTTAA+AGG | + | chr3_2:58893836-58893855 | None:intergenic | 40.0% |
AACATATCTCTACGTCTTGC+AGG | - | chr3_2:58894365-58894384 | Msa0413960:CDS | 40.0% | |
ATGGTGAAACATGCTGATGA+TGG | - | chr3_2:58894392-58894411 | Msa0413960:CDS | 40.0% | |
!! | AACTTACCCTTTGGTGTTCA+AGG | - | chr3_2:58894565-58894584 | Msa0413960:CDS | 40.0% |
TTGTCACCTTGAACACCAAA+GGG | + | chr3_2:58894574-58894593 | None:intergenic | 40.0% | |
TTTGTCACCTTGAACACCAA+AGG | + | chr3_2:58894575-58894594 | None:intergenic | 40.0% | |
AAGCCATTATCGAACTTGCA+AGG | - | chr3_2:58894675-58894694 | Msa0413960:CDS | 40.0% | |
AGCCATTATCGAACTTGCAA+GGG | - | chr3_2:58894676-58894695 | Msa0413960:CDS | 40.0% | |
TGGGAAAGAGAGAGACTTAT+TGG | - | chr3_2:58894728-58894747 | Msa0413960:CDS | 40.0% | |
! | TTCATAGGGCATTCTGGAAA+TGG | + | chr3_2:58894770-58894789 | None:intergenic | 40.0% |
! | TCTTTGTTCATAGGGCATTC+TGG | + | chr3_2:58894776-58894795 | None:intergenic | 40.0% |
TCGAGGGTGAAATGATAGAA+AGG | - | chr3_2:58894864-58894883 | Msa0413960:CDS | 40.0% | |
AAGTTAGCGAGCTCAATGAA+AGG | - | chr3_2:58895110-58895129 | Msa0413960:intron | 40.0% | |
GAATCAAGGATGCTAAGTAC+TGG | - | chr3_2:58895238-58895257 | Msa0413960:intron | 40.0% | |
CTGACAGAGTGGAAACATTT+AGG | - | chr3_2:58895274-58895293 | Msa0413960:intron | 40.0% | |
! | GATGGAGATGTAGATTTTGG+TGG | - | chr3_2:58895304-58895323 | Msa0413960:intron | 40.0% |
GATGATCCATCAATGAAAGG+AGG | - | chr3_2:58895418-58895437 | Msa0413960:intron | 40.0% | |
TGATCCATCAATGAAAGGAG+GGG | - | chr3_2:58895420-58895439 | Msa0413960:intron | 40.0% | |
TTAACCCCTCCTTTCATTGA+TGG | + | chr3_2:58895427-58895446 | None:intergenic | 40.0% | |
GAAGTTGCCTTAGTGTTTCA+AGG | - | chr3_2:58895546-58895565 | Msa0413960:intron | 40.0% | |
CTATTTGCCACAATTCAAGG+AGG | + | chr3_2:58895676-58895695 | None:intergenic | 40.0% | |
GCACTATTTGCCACAATTCA+AGG | + | chr3_2:58895679-58895698 | None:intergenic | 40.0% | |
GGCAAATAGTGCATTGTGAT+TGG | - | chr3_2:58895687-58895706 | Msa0413960:CDS | 40.0% | |
GGTAGCTGTCTTATAAGCCA+TGG | + | chr3_2:58893462-58893481 | None:intergenic | 45.0% | |
TCTACGTCTTGCAGGTAGAA+TGG | - | chr3_2:58894373-58894392 | Msa0413960:CDS | 45.0% | |
GTGACAAAATTTCGTTGCGG+AGG | - | chr3_2:58894587-58894606 | Msa0413960:CDS | 45.0% | |
GGAGGTTTCACAATCGGAAT+GGG | - | chr3_2:58894605-58894624 | Msa0413960:CDS | 45.0% | |
GAGGTTTCACAATCGGAATG+GGG | - | chr3_2:58894606-58894625 | Msa0413960:CDS | 45.0% | |
AGGTTTCACAATCGGAATGG+GGG | - | chr3_2:58894607-58894626 | Msa0413960:CDS | 45.0% | |
GCCATTATCGAACTTGCAAG+GGG | - | chr3_2:58894677-58894696 | Msa0413960:CDS | 45.0% | |
TCCCCTTGCAAGTTCGATAA+TGG | + | chr3_2:58894681-58894700 | None:intergenic | 45.0% | |
ACAACTTTCGAAGCGATTGC+AGG | - | chr3_2:58894929-58894948 | Msa0413960:CDS | 45.0% | |
AAGCGATTGCAGGTTATGTG+TGG | - | chr3_2:58894939-58894958 | Msa0413960:intron | 45.0% | |
GCGTCTAATACCAGCTACAA+TGG | + | chr3_2:58895017-58895036 | None:intergenic | 45.0% | |
!! | GCTAAGTACTGGTGCAGTAA+CGG | - | chr3_2:58895249-58895268 | Msa0413960:intron | 45.0% |
ATGGACGCAAACAAGTTGCA+TGG | + | chr3_2:58895358-58895377 | None:intergenic | 45.0% | |
! | ATGCAACTTGTTTGCGTCCA+TGG | - | chr3_2:58895357-58895376 | Msa0413960:intron | 45.0% |
AAGGCAACTTCAACTGAACG+TGG | + | chr3_2:58895537-58895556 | None:intergenic | 45.0% | |
! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr3_2:58895659-58895678 | None:intergenic | 45.0% |
!!! | AAATTATGATTTTATTTTAT+AGG | + | chr3_2:58893971-58893990 | None:intergenic | 5.0% |
CGTTGCGGAGGTTTCACAAT+CGG | - | chr3_2:58894599-58894618 | Msa0413960:CDS | 50.0% | |
CGGAGGTTTCACAATCGGAA+TGG | - | chr3_2:58894604-58894623 | Msa0413960:CDS | 50.0% | |
GTGTTGCACGCTATCTGTGA+CGG | - | chr3_2:58894629-58894648 | Msa0413960:CDS | 50.0% | |
AGTCTCTCTCTTTCCCACAC+AGG | + | chr3_2:58894725-58894744 | None:intergenic | 50.0% | |
CGATTGCAGGTTATGTGTGG+AGG | - | chr3_2:58894942-58894961 | Msa0413960:intron | 50.0% | |
!! | ACAGTGCTGACCATTGTAGC+TGG | - | chr3_2:58895004-58895023 | Msa0413960:intron | 50.0% |
! | CAGTAACGGTTCTGACAGAG+TGG | - | chr3_2:58895263-58895282 | Msa0413960:intron | 50.0% |
GCAAACAAGTTGCATGGTGC+TGG | + | chr3_2:58895352-58895371 | None:intergenic | 50.0% | |
TTCCTCCTTGAACTTGGGCA+TGG | + | chr3_2:58895476-58895495 | None:intergenic | 50.0% | |
AGCCACACCTCCTTGAATTG+TGG | - | chr3_2:58895666-58895685 | Msa0413960:CDS | 50.0% | |
TGCCACAATTCAAGGAGGTG+TGG | + | chr3_2:58895671-58895690 | None:intergenic | 50.0% | |
! | CACGCTATCTGTGACGGAGT+TGG | - | chr3_2:58894635-58894654 | Msa0413960:CDS | 55.0% |
AACCCTCGACGATACCTGTG+TGG | - | chr3_2:58894708-58894727 | Msa0413960:CDS | 55.0% | |
ACCCTCGACGATACCTGTGT+GGG | - | chr3_2:58894709-58894728 | Msa0413960:CDS | 55.0% | |
! | TCCCACACAGGTATCGTCGA+GGG | + | chr3_2:58894713-58894732 | None:intergenic | 55.0% |
! | TTCCCACACAGGTATCGTCG+AGG | + | chr3_2:58894714-58894733 | None:intergenic | 55.0% |
ACTTGGGCATGGCAGCAACA+GGG | + | chr3_2:58895465-58895484 | None:intergenic | 55.0% | |
AACTTGGGCATGGCAGCAAC+AGG | + | chr3_2:58895466-58895485 | None:intergenic | 55.0% | |
TGCTGCCATGCCCAAGTTCA+AGG | - | chr3_2:58895468-58895487 | Msa0413960:intron | 55.0% | |
TGCCATGCCCAAGTTCAAGG+AGG | - | chr3_2:58895471-58895490 | Msa0413960:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 58893394 | 58895949 | 58893394 | ID=Msa0413960;Name=Msa0413960 |
chr3_2 | mRNA | 58893394 | 58895949 | 58893394 | ID=Msa0413960-mRNA-1;Parent=Msa0413960;Name=Msa0413960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=67|1|1|1|1|1|2|427|461 |
chr3_2 | exon | 58893394 | 58894956 | 58893394 | ID=Msa0413960-mRNA-1:exon:12248;Parent=Msa0413960-mRNA-1 |
chr3_2 | exon | 58895633 | 58895949 | 58895633 | ID=Msa0413960-mRNA-1:exon:12247;Parent=Msa0413960-mRNA-1 |
chr3_2 | five_prime_UTR | 58895883 | 58895949 | 58895883 | ID=Msa0413960-mRNA-1:five_prime_utr;Parent=Msa0413960-mRNA-1 |
chr3_2 | CDS | 58895633 | 58895882 | 58895633 | ID=Msa0413960-mRNA-1:cds;Parent=Msa0413960-mRNA-1 |
chr3_2 | CDS | 58893821 | 58894956 | 58893821 | ID=Msa0413960-mRNA-1:cds;Parent=Msa0413960-mRNA-1 |
chr3_2 | three_prime_UTR | 58893394 | 58893820 | 58893394 | ID=Msa0413960-mRNA-1:three_prime_utr;Parent=Msa0413960-mRNA-1 |
Gene Sequence |
Protein sequence |