AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0261330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261330 MtrunA17_Chr2g0323351 81.028 253 11 4 1 219 1 250 2.23e-132 372
Msa0261330 MtrunA17_Chr4g0022901 38.971 272 110 6 1 216 1 272 2.55e-50 164
Msa0261330 MtrunA17_Chr4g0022931 36.082 291 92 7 1 216 1 272 1.96e-49 162
Msa0261330 MtrunA17_Chr2g0323331 57.042 142 49 3 54 195 3 132 2.21e-46 157
Msa0261330 MtrunA17_Chr2g0323331 64.045 89 30 2 105 193 132 218 6.07e-27 105
Msa0261330 MtrunA17_Chr2g0323331 35.714 168 30 5 106 217 221 366 8.44e-18 80.9
Msa0261330 MtrunA17_Chr4g0022911 39.720 214 78 4 1 181 1 196 6.12e-41 141
Msa0261330 MtrunA17_Chr4g0022881 34.071 226 96 5 1 190 1 209 7.38e-34 121
Msa0261330 MtrunA17_Chr1g0187761 33.333 246 109 6 1 214 1 223 1.02e-33 121
Msa0261330 MtrunA17_Chr2g0323321 91.228 57 4 1 1 57 1 56 1.22e-33 117
Msa0261330 MtrunA17_Chr1g0167661 33.898 236 98 5 1 204 1 210 5.27e-33 119
Msa0261330 MtrunA17_Chr1g0167691 35.808 229 87 5 1 195 1 203 1.56e-32 118
Msa0261330 MtrunA17_Chr3g0115821 45.902 122 34 1 1 90 1 122 2.45e-31 117
Msa0261330 MtrunA17_Chr4g0022891 31.915 235 97 5 1 190 1 217 3.95e-31 114
Msa0261330 MtrunA17_Chr2g0323411 49.180 122 30 1 1 90 1 122 4.27e-31 116
Msa0261330 MtrunA17_Chr2g0281071 49.580 119 27 2 1 86 1 119 2.04e-30 114
Msa0261330 MtrunA17_Chr7g0261281 36.321 212 85 4 1 164 1 210 3.54e-30 112
Msa0261330 MtrunA17_Chr4g0048511 47.899 119 29 2 1 86 1 119 7.65e-30 113
Msa0261330 MtrunA17_Chr4g0039971 44.915 118 33 1 1 86 2 119 1.59e-29 112
Msa0261330 MtrunA17_Chr6g0453471 47.458 118 30 1 1 86 1 118 3.46e-29 111
Msa0261330 MtrunA17_Chr5g0410961 38.095 189 78 4 1 157 1 182 1.05e-28 110
Msa0261330 MtrunA17_Chr4g0058631 36.813 182 66 3 1 149 1 166 1.42e-28 110
Msa0261330 MtrunA17_Chr1g0203411 44.828 116 32 1 1 84 1 116 1.53e-28 108
Msa0261330 MtrunA17_Chr7g0274581 43.333 120 36 1 1 88 1 120 1.54e-28 106
Msa0261330 MtrunA17_Chr4g0042671 47.458 118 30 1 1 86 1 118 2.07e-28 110
Msa0261330 MtrunA17_Chr3g0103281 43.966 116 33 1 1 84 1 116 2.99e-28 108
Msa0261330 MtrunA17_Chr5g0395281 44.068 118 34 1 1 86 1 118 3.00e-28 108
Msa0261330 MtrunA17_Chr4g0057031 47.541 122 32 1 1 90 1 122 4.73e-28 107
Msa0261330 MtrunA17_Chr3g0110351 33.624 229 109 5 1 194 1 221 6.96e-28 107
Msa0261330 MtrunA17_Chr7g0217741 46.610 118 31 1 1 86 1 118 9.19e-28 107
Msa0261330 MtrunA17_Chr6g0452271 43.220 118 35 1 1 86 1 118 1.90e-27 106
Msa0261330 MtrunA17_Chr5g0434571 35.981 214 84 6 1 165 37 246 6.20e-27 105
Msa0261330 MtrunA17_Chr2g0309911 42.373 118 36 1 7 92 6 123 2.03e-26 103
Msa0261330 MtrunA17_Chr1g0193371 36.872 179 61 5 1 146 1 160 2.94e-26 103
Msa0261330 MtrunA17_Chr3g0117091 43.220 118 34 2 6 90 5 122 4.54e-26 103
Msa0261330 MtrunA17_Chr1g0211161 42.276 123 38 2 1 90 1 123 5.13e-26 100
Msa0261330 MtrunA17_Chr4g0070611 38.776 147 56 2 1 113 1 147 1.22e-25 101
Msa0261330 MtrunA17_Chr4g0037141 42.623 122 38 1 1 90 1 122 1.50e-25 100
Msa0261330 MtrunA17_Chr3g0131121 45.690 116 31 1 1 84 1 116 1.63e-25 100
Msa0261330 MtrunA17_Chr8g0342541 42.342 111 32 1 7 85 7 117 1.77e-25 101
Msa0261330 MtrunA17_Chr1g0152011 41.732 127 40 3 1 93 1 127 1.86e-25 101
Msa0261330 MtrunA17_Chr7g0228891 43.966 116 33 1 1 84 1 116 1.89e-25 100
Msa0261330 MtrunA17_Chr4g0070641 38.776 147 56 2 1 113 1 147 2.87e-25 97.1
Msa0261330 MtrunA17_Chr2g0330041 42.342 111 32 1 7 85 7 117 3.19e-25 101
Msa0261330 MtrunA17_Chr8g0342521 43.243 111 31 1 7 85 7 117 3.31e-25 100
Msa0261330 MtrunA17_Chr1g0193801 34.973 183 68 4 1 151 1 164 5.90e-25 100
Msa0261330 MtrunA17_Chr3g0135311 36.310 168 68 3 1 135 1 162 6.30e-25 100
Msa0261330 MtrunA17_Chr4g0068061 43.103 116 34 1 1 84 1 116 7.70e-25 99.8
Msa0261330 MtrunA17_Chr5g0435101 41.026 117 37 1 2 86 1 117 8.12e-25 97.1
Msa0261330 MtrunA17_Chr4g0060721 37.063 143 58 1 1 111 2 144 8.73e-25 99.8
Msa0261330 MtrunA17_Chr7g0270891 42.623 122 38 1 1 90 1 122 8.86e-25 100
Msa0261330 MtrunA17_Chr4g0028311 43.220 118 34 2 1 85 1 118 1.09e-24 99.0
Msa0261330 MtrunA17_Chr7g0217221 42.149 121 38 1 1 89 1 121 1.28e-24 97.8
Msa0261330 MtrunA17_Chr1g0151941 31.343 201 92 4 1 162 1 194 1.59e-24 97.4
Msa0261330 MtrunA17_Chr5g0400821 38.889 144 46 3 1 102 1 144 1.62e-24 98.6
Msa0261330 MtrunA17_Chr8g0349261 46.218 119 30 3 1 85 1 119 2.10e-24 97.8
Msa0261330 MtrunA17_Chr7g0275911 43.966 116 33 1 1 84 1 116 2.59e-24 96.7
Msa0261330 MtrunA17_Chr5g0417821 47.321 112 27 1 11 90 6 117 2.61e-24 97.4
Msa0261330 MtrunA17_Chr2g0311221 44.444 108 28 1 3 78 5 112 3.03e-24 98.2
Msa0261330 MtrunA17_Chr3g0092401 42.373 118 36 1 1 86 2 119 5.21e-24 97.1
Msa0261330 MtrunA17_Chr8g0385321 42.623 122 38 1 1 90 1 122 6.13e-24 97.1
Msa0261330 MtrunA17_Chr3g0121241 41.667 120 38 1 5 92 35 154 1.39e-23 95.9
Msa0261330 MtrunA17_Chr8g0346561 42.149 121 38 1 1 89 1 121 1.55e-23 95.5
Msa0261330 MtrunA17_Chr8g0342481 42.478 113 30 3 7 85 7 118 2.13e-23 96.7
Msa0261330 MtrunA17_Chr7g0269831 43.103 116 34 1 1 84 1 116 2.21e-23 96.3
Msa0261330 MtrunA17_Chr7g0264641 40.678 118 37 2 1 85 1 118 2.51e-23 94.4
Msa0261330 MtrunA17_Chr7g0254411 42.373 118 36 1 1 86 1 118 2.57e-23 95.5
Msa0261330 MtrunA17_Chr7g0271241 44.037 109 29 1 1 77 1 109 3.64e-23 95.9
Msa0261330 MtrunA17_Chr6g0453211 43.636 110 30 1 1 78 1 110 3.99e-23 94.7
Msa0261330 MtrunA17_Chr2g0327351 44.144 111 29 2 1 78 1 111 6.71e-23 94.4
Msa0261330 MtrunA17_Chr2g0328771 45.714 105 25 1 12 84 20 124 8.73e-23 94.0
Msa0261330 MtrunA17_Chr1g0194951 42.241 116 35 1 1 84 1 116 1.03e-22 94.4
Msa0261330 MtrunA17_Chr8g0387421 39.496 119 40 1 1 87 1 119 1.12e-22 93.6
Msa0261330 MtrunA17_Chr4g0054391 43.636 110 29 2 1 77 1 110 3.04e-22 92.0
Msa0261330 MtrunA17_Chr4g0044421 40.984 122 39 2 2 90 1 122 4.84e-22 89.4
Msa0261330 MtrunA17_Chr4g0032401 43.925 107 28 1 10 84 15 121 5.45e-22 92.0
Msa0261330 MtrunA17_Chr1g0209661 28.897 263 130 8 8 215 23 283 1.48e-21 90.5
Msa0261330 MtrunA17_Chr3g0088461 42.202 109 31 1 8 84 18 126 2.48e-21 90.5
Msa0261330 MtrunA17_Chr5g0397231 40.385 104 30 1 7 78 7 110 4.44e-21 89.7
Msa0261330 MtrunA17_Chr6g0470971 40.351 114 36 1 7 88 9 122 6.22e-21 88.2
Msa0261330 MtrunA17_Chr4g0072751 42.342 111 31 2 1 78 1 111 1.27e-20 88.6
Msa0261330 MtrunA17_Chr6g0487491 32.298 161 60 3 1 112 1 161 2.13e-20 86.7
Msa0261330 MtrunA17_Chr5g0434911 39.640 111 35 1 7 85 16 126 2.59e-20 86.7
Msa0261330 MtrunA17_Chr1g0180391 43.810 105 27 1 12 84 19 123 3.75e-20 85.1
Msa0261330 MtrunA17_Chr4g0042611 62.069 58 22 0 1 58 1 58 6.20e-20 80.9
Msa0261330 MtrunA17_Chr1g0203441 41.509 106 30 1 13 86 14 119 6.46e-20 85.5
Msa0261330 MtrunA17_Chr5g0434931 40.187 107 32 1 11 85 34 140 7.03e-20 85.5
Msa0261330 MtrunA17_Chr7g0228231 35.669 157 66 3 12 134 14 169 1.39e-19 83.2
Msa0261330 MtrunA17_Chr5g0434831 41.121 107 31 1 11 85 6 112 2.14e-19 82.4
Msa0261330 MtrunA17_Chr5g0434841 39.316 117 38 2 2 85 9 125 2.91e-19 84.3
Msa0261330 MtrunA17_Chr5g0395221 58.621 58 24 0 1 58 1 58 4.78e-19 78.6
Msa0261330 MtrunA17_Chr3g0099131 43.689 103 26 1 12 82 41 143 1.01e-18 84.0
Msa0261330 MtrunA17_Chr8g0342511 55.172 58 26 0 1 58 1 58 2.90e-18 76.6
Msa0261330 MtrunA17_Chr8g0342531 61.538 52 20 0 7 58 7 58 2.99e-18 78.6
Msa0261330 MtrunA17_Chr2g0322521 38.679 106 33 1 9 82 26 131 3.19e-18 82.0
Msa0261330 MtrunA17_Chr3g0080861 40.777 103 29 1 12 82 37 139 3.95e-18 82.4
Msa0261330 MtrunA17_Chr1g0154031 41.748 103 28 1 12 82 76 178 4.05e-18 82.0
Msa0261330 MtrunA17_Chr1g0194291 38.793 116 39 1 8 91 17 132 1.31e-17 79.0
Msa0261330 MtrunA17_Chr2g0294811 62.069 58 22 0 1 58 1 58 1.36e-17 75.5
Msa0261330 MtrunA17_Chr1g0186061 43.243 111 30 2 13 91 21 130 1.84e-17 78.6
Msa0261330 MtrunA17_Chr7g0228991 38.318 107 34 1 11 85 28 134 2.23e-17 78.6
Msa0261330 MtrunA17_Chr5g0440781 37.864 103 31 1 13 82 13 115 7.55e-17 75.5
Msa0261330 MtrunA17_Chr2g0293911 37.302 126 45 2 8 101 20 143 7.92e-17 77.8
Msa0261330 MtrunA17_Chr6g0450101 40.952 105 30 1 12 84 14 118 8.08e-17 75.9
Msa0261330 MtrunA17_Chr5g0440761 37.864 103 31 1 13 82 13 115 8.81e-17 76.6
Msa0261330 MtrunA17_Chr5g0441141 37.864 103 31 1 13 82 13 115 9.48e-17 76.6
Msa0261330 MtrunA17_Chr8g0342461 54.098 61 23 2 1 58 1 59 1.49e-16 73.6
Msa0261330 MtrunA17_Chr7g0220341 35.345 116 41 2 11 92 24 139 4.34e-16 75.1
Msa0261330 MtrunA17_Chr8g0342471 52.459 61 24 2 1 58 1 59 5.18e-16 72.0
Msa0261330 MtrunA17_Chr8g0360111 37.255 102 32 1 11 80 24 125 3.05e-15 72.4
Msa0261330 MtrunA17_Chr5g0425591 62.222 45 17 0 13 57 10 54 4.06e-13 63.2
Msa0261330 MtrunA17_Chr3g0099141 56.863 51 22 0 8 58 36 86 6.38e-13 63.9
Msa0261330 MtrunA17_Chr6g0453751 54.545 55 17 1 11 57 19 73 3.22e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261330 AT4G21440.1 48.305 118 29 1 1 86 1 118 2.18e-32 120
Msa0261330 AT4G28110.1 48.361 122 31 1 1 90 1 122 5.59e-32 117
Msa0261330 AT3G23250.1 34.978 223 104 5 1 183 1 222 1.71e-31 116
Msa0261330 AT2G31180.1 34.685 222 85 5 1 190 1 194 2.83e-31 115
Msa0261330 AT4G05100.1 51.261 119 25 2 1 86 1 119 3.82e-31 116
Msa0261330 AT3G02940.2 48.305 118 29 1 1 86 1 118 3.97e-31 116
Msa0261330 AT3G02940.1 48.305 118 29 1 1 86 1 118 7.93e-31 115
Msa0261330 AT3G02940.3 48.305 118 29 1 1 86 1 118 7.93e-31 115
Msa0261330 AT5G16770.4 47.458 118 30 1 1 86 1 118 9.98e-31 115
Msa0261330 AT5G16770.3 47.458 118 30 1 1 86 1 118 9.98e-31 115
Msa0261330 AT3G01140.2 49.153 118 28 1 1 86 1 118 1.48e-30 115
Msa0261330 AT1G18570.1 44.595 148 46 4 1 113 1 147 1.75e-30 115
Msa0261330 AT5G16770.1 47.458 118 30 1 1 86 1 118 1.77e-30 115
Msa0261330 AT5G16770.2 47.458 118 30 1 1 86 1 118 1.77e-30 115
Msa0261330 AT5G15310.4 47.541 122 32 1 1 90 1 122 2.14e-30 112
Msa0261330 AT1G34670.1 47.458 118 30 1 1 86 1 118 2.31e-30 115
Msa0261330 AT5G15310.1 47.541 122 32 1 1 90 1 122 2.58e-30 114
Msa0261330 AT5G15310.2 47.541 122 32 1 1 90 1 122 2.83e-30 114
Msa0261330 AT3G01140.1 47.541 122 32 1 1 90 44 165 6.47e-30 114
Msa0261330 AT5G10280.1 46.610 118 31 1 1 86 1 118 6.99e-30 113
Msa0261330 AT3G61250.1 46.774 124 34 1 1 92 1 124 1.06e-29 112
Msa0261330 AT5G65230.1 46.610 118 31 1 1 86 1 118 1.31e-29 112
Msa0261330 AT5G60890.1 46.341 123 34 1 1 91 1 123 1.34e-29 112
Msa0261330 AT1G74080.1 47.541 122 32 1 1 90 1 122 1.89e-29 112
Msa0261330 AT5G07700.1 36.216 185 86 1 1 153 1 185 5.82e-29 111
Msa0261330 AT5G07700.2 36.216 185 86 1 1 153 1 185 5.82e-29 111
Msa0261330 AT5G56110.1 44.828 116 32 1 1 84 1 116 1.68e-28 109
Msa0261330 AT2G16720.1 42.029 138 46 2 1 104 1 138 4.73e-28 107
Msa0261330 AT1G06180.1 47.414 116 29 1 1 84 1 116 7.53e-28 106
Msa0261330 AT4G22680.1 48.305 118 29 1 1 86 1 118 8.36e-28 106
Msa0261330 AT5G07690.1 43.284 134 44 1 1 102 1 134 1.23e-27 107
Msa0261330 AT1G79180.1 42.975 121 37 1 3 91 5 125 1.44e-27 106
Msa0261330 AT4G12350.1 47.541 122 32 1 1 90 1 122 1.65e-27 106
Msa0261330 AT5G61420.2 40.690 145 54 1 1 113 1 145 1.66e-27 107
Msa0261330 AT1G57560.2 42.336 137 45 2 1 103 1 137 1.82e-27 105
Msa0261330 AT4G17785.2 44.715 123 35 2 1 90 1 123 2.13e-27 107
Msa0261330 AT4G17785.1 44.715 123 35 2 1 90 1 123 2.63e-27 107
Msa0261330 AT1G57560.1 45.082 122 35 1 1 90 1 122 2.87e-27 106
Msa0261330 AT4G38620.1 38.037 163 65 2 1 131 1 159 3.25e-27 105
Msa0261330 AT1G66230.1 39.521 167 50 3 1 122 1 161 4.35e-27 105
Msa0261330 AT5G16600.1 47.458 118 30 1 1 86 1 118 1.58e-26 104
Msa0261330 AT1G35515.1 39.437 142 54 1 1 110 1 142 1.96e-26 101
Msa0261330 AT4G34990.1 42.623 122 38 1 1 90 1 122 3.67e-26 102
Msa0261330 AT1G22640.1 41.803 122 39 1 1 90 1 122 4.40e-26 102
Msa0261330 AT1G56160.1 43.860 114 32 1 3 84 5 118 6.61e-26 102
Msa0261330 AT5G26660.1 35.567 194 73 4 1 161 1 175 7.61e-26 103
Msa0261330 AT4G09460.1 42.623 122 38 1 1 90 1 122 8.78e-26 100
Msa0261330 AT4G01680.3 44.828 116 32 1 1 84 1 116 1.74e-25 100
Msa0261330 AT1G16490.1 43.860 114 32 1 3 84 5 118 1.84e-25 100
Msa0261330 AT5G57620.1 42.063 126 40 2 1 93 1 126 1.90e-25 101
Msa0261330 AT5G62470.2 38.356 146 55 2 1 111 1 146 2.48e-25 101
Msa0261330 AT3G13540.1 38.129 139 52 2 4 110 15 151 2.91e-25 99.4
Msa0261330 AT5G62320.1 44.094 127 32 3 3 90 4 130 3.27e-25 99.4
Msa0261330 AT4G01680.1 44.828 116 32 1 1 84 1 116 4.62e-25 100
Msa0261330 AT5G54230.1 46.729 107 25 1 12 86 12 118 4.66e-25 100
Msa0261330 AT3G28910.1 41.085 129 44 1 1 97 1 129 4.85e-25 100
Msa0261330 AT1G08810.1 39.161 143 50 2 1 106 1 143 6.68e-25 99.4
Msa0261330 AT1G09540.1 35.802 162 70 2 1 128 1 162 1.59e-24 99.8
Msa0261330 AT1G74430.1 40.984 122 40 1 1 90 1 122 1.79e-24 97.8
Msa0261330 AT3G47600.1 43.220 118 35 1 1 86 1 118 2.25e-24 99.0
Msa0261330 AT3G49690.1 44.068 118 33 2 1 85 1 118 2.40e-24 98.2
Msa0261330 AT3G12820.1 41.379 116 36 1 3 86 5 120 3.11e-24 96.7
Msa0261330 AT3G62610.1 43.103 116 34 1 1 84 1 116 3.64e-24 98.6
Msa0261330 AT3G13890.2 41.441 111 33 1 7 85 7 117 4.05e-24 98.6
Msa0261330 AT3G12720.1 39.655 116 38 1 7 90 17 132 4.26e-24 97.8
Msa0261330 AT5G23000.1 42.373 118 35 2 1 85 1 118 7.67e-24 97.4
Msa0261330 AT5G62470.1 38.356 146 54 3 1 111 1 145 9.79e-24 97.4
Msa0261330 AT3G28470.1 43.636 110 30 1 1 78 1 110 1.40e-23 96.3
Msa0261330 AT5G65790.1 42.149 121 37 2 1 88 1 121 3.26e-23 96.3
Msa0261330 AT2G47460.1 41.379 116 36 1 1 84 1 116 3.60e-23 96.3
Msa0261330 AT2G36890.1 43.220 118 34 2 1 85 1 118 4.94e-23 94.7
Msa0261330 AT2G36890.2 43.220 118 34 2 1 85 42 159 5.57e-23 95.1
Msa0261330 AT5G49330.1 41.379 116 36 1 1 84 1 116 7.38e-23 94.7
Msa0261330 AT4G37780.1 38.710 124 43 2 1 91 1 124 9.10e-23 94.0
Msa0261330 AT5G14340.1 41.379 116 36 1 1 84 13 128 1.44e-22 92.8
Msa0261330 AT1G74650.1 40.833 120 39 1 1 88 1 120 1.64e-22 93.6
Msa0261330 AT1G63910.1 41.071 112 34 1 7 86 7 118 1.94e-22 94.0
Msa0261330 AT1G18710.1 38.525 122 43 1 1 90 1 122 2.13e-22 92.4
Msa0261330 AT4G01680.2 40.625 128 32 2 1 84 1 128 8.86e-22 92.0
Msa0261330 AT4G25560.1 42.857 126 36 4 1 92 1 124 1.36e-21 90.5
Msa0261330 AT3G13890.1 38.333 120 33 2 7 85 7 126 3.42e-21 90.5
Msa0261330 AT5G12870.1 42.991 107 29 1 12 86 18 124 2.36e-20 87.0
Msa0261330 AT3G48920.1 43.269 104 27 1 13 84 19 122 5.24e-20 85.9
Msa0261330 AT5G52260.1 35.338 133 54 1 1 101 1 133 4.38e-19 83.6
Msa0261330 AT3G08500.1 41.905 105 29 1 12 84 30 134 5.88e-19 84.3
Msa0261330 AT5G35550.1 36.975 119 43 1 12 98 14 132 1.12e-18 82.0
Msa0261330 AT5G40350.1 38.333 120 42 1 12 99 17 136 1.46e-18 80.9
Msa0261330 AT3G27920.1 34.711 121 47 1 13 101 15 135 1.63e-18 81.3
Msa0261330 AT5G14750.1 38.318 107 34 1 10 84 14 120 3.48e-18 79.7
Msa0261330 AT5G06100.1 40.187 107 32 1 8 82 28 134 8.90e-18 81.6
Msa0261330 AT5G40330.1 38.462 104 32 1 13 84 13 116 9.02e-18 79.0
Msa0261330 AT5G55020.1 41.905 105 29 1 12 84 26 130 9.52e-18 81.6
Msa0261330 AT2G32460.1 38.739 111 36 1 4 82 10 120 1.07e-17 81.3
Msa0261330 AT5G06100.5 40.187 107 32 1 8 82 28 134 1.17e-17 81.3
Msa0261330 AT5G06100.2 40.187 107 32 1 8 82 28 134 1.17e-17 81.3
Msa0261330 AT5G06100.3 40.187 107 32 1 8 82 28 134 1.17e-17 81.3
Msa0261330 AT5G06100.4 40.187 107 32 1 8 82 28 134 1.17e-17 81.3
Msa0261330 AT3G30210.1 32.663 199 85 6 11 166 26 218 1.19e-17 79.7
Msa0261330 AT2G32460.2 40.385 104 30 1 11 82 5 108 1.28e-17 81.3
Msa0261330 AT4G26930.1 41.748 103 28 1 12 82 19 121 2.94e-17 79.7
Msa0261330 AT3G11440.2 40.777 103 29 1 12 82 41 143 2.99e-17 80.1
Msa0261330 AT1G48000.1 39.806 103 30 1 12 82 32 134 3.07e-17 78.2
Msa0261330 AT3G27810.1 40.952 105 30 1 12 84 20 124 4.06e-17 77.4
Msa0261330 AT3G11440.3 40.777 103 29 1 12 82 41 143 4.13e-17 79.7
Msa0261330 AT3G11440.4 40.777 103 29 1 12 82 41 143 4.13e-17 79.7
Msa0261330 AT3G11440.1 40.777 103 29 1 12 82 41 143 4.13e-17 79.7
Msa0261330 AT1G56650.1 29.091 220 105 7 11 192 7 213 4.41e-17 77.8
Msa0261330 AT1G66370.1 36.154 130 46 2 11 108 7 131 4.93e-17 77.4
Msa0261330 AT3G24310.1 42.308 104 28 1 11 82 17 120 5.24e-17 77.8
Msa0261330 AT1G66380.1 39.423 104 31 1 11 82 7 110 5.29e-17 75.1
Msa0261330 AT4G13480.1 43.137 102 26 1 13 82 7 108 6.78e-17 77.4
Msa0261330 AT1G66390.1 39.423 104 31 1 11 82 7 110 8.42e-17 77.0
Msa0261330 AT3G06490.1 37.931 116 40 1 8 91 15 130 2.10e-16 77.0
Msa0261330 AT2G26960.1 38.679 106 33 1 9 82 17 122 2.12e-16 77.4
Msa0261330 AT1G66380.2 59.574 47 19 0 11 57 7 53 4.30e-12 61.2

Find 47 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACATTTCTCCAAGTTTAT+TGG 0.167900 2_2:-59639297 None:intergenic
AACATCATTTGATTCCTATT+TGG 0.191927 2_2:+59639677 Msa0261330:three_prime_UTR
AACATTTCTCCAAGTTTATT+GGG 0.260110 2_2:-59639296 None:intergenic
ATCCTCTTGCATAGCATTAA+TGG 0.275258 2_2:+59639379 Msa0261330:CDS
TGTTGTACTTTGAAATAAAA+TGG 0.292520 2_2:+59639728 Msa0261330:three_prime_UTR
AGACTGTGAGTGAAAATTTC+TGG 0.302943 2_2:+59639483 Msa0261330:CDS
CGCTAAACGTGGAATGAAAA+AGG 0.324189 2_2:+59639232 Msa0261330:CDS
TCCATGTATGCATCCATAAA+AGG 0.332422 2_2:-59639461 None:intergenic
TACGAGCTGTCTATTATATA+TGG 0.338366 2_2:-59639512 None:intergenic
CAACGAGCCTATAGAGAATA+TGG 0.340863 2_2:+59637799 Msa0261330:exon
CGACAACTACCTAAATTTGC+AGG 0.368724 2_2:+59637929 Msa0261330:CDS
AGTAATATAGAATCTTCATT+TGG 0.389173 2_2:-59639542 None:intergenic
CTAGGTACGGCTGTTGGAAT+TGG 0.410139 2_2:+59637906 Msa0261330:CDS
AGATGGTGGACTCGTAATAT+TGG 0.410591 2_2:-59639336 None:intergenic
CACACACTCATACTAAGAAT+TGG 0.412904 2_2:+59637754 Msa0261330:five_prime_UTR
CAAAGTTCTGCATCGTATAC+AGG 0.413524 2_2:-59639584 None:intergenic
GTTCTCACCATATTCTCTAT+AGG 0.417819 2_2:-59637806 None:intergenic
ATCTCATTATCTGTTCTCCC+TGG 0.474483 2_2:-59639155 None:intergenic
CTTGTAGATGGTTGTGAAGA+TGG 0.476226 2_2:-59639353 None:intergenic
CAAGAGGATGCACTTGTAGA+TGG 0.483657 2_2:-59639365 None:intergenic
AAATGATGTTATATTATCTA+CGG 0.486194 2_2:-59639664 None:intergenic
TGGTAAATTTGCAGAAATCA+TGG 0.494035 2_2:-59639135 None:intergenic
AGTTGATTGCTTATGTAACT+AGG 0.494779 2_2:+59637888 Msa0261330:CDS
ATAAATCGTCACTGTAATGT+GGG 0.497433 2_2:+59639619 Msa0261330:exon
ATTGCTTATGTAACTAGGTA+CGG 0.510475 2_2:+59637893 Msa0261330:CDS
ATGATTTCTGCAAATTTACC+AGG 0.512600 2_2:+59639137 Msa0261330:CDS
CTGTATACGATGCAGAACTT+TGG 0.512601 2_2:+59639585 Msa0261330:CDS
GTGGGAAGAGTTGTAGACTA+AGG 0.513007 2_2:+59638075 Msa0261330:CDS
AATAAATCGTCACTGTAATG+TGG 0.527137 2_2:+59639618 Msa0261330:exon
AATATAGAATCTTCATTTGG+AGG 0.536505 2_2:-59639539 None:intergenic
CATATTCTCTATAGGCTCGT+TGG 0.541305 2_2:-59637798 None:intergenic
AATGATGTTATATTATCTAC+GGG 0.542946 2_2:-59639663 None:intergenic
ATATAGAATCTTCATTTGGA+GGG 0.545886 2_2:-59639538 None:intergenic
ATCCATTAATGCTATGCAAG+AGG 0.579170 2_2:-59639381 None:intergenic
TTGCAGGTCTTGAAAGGTGT+GGG 0.585999 2_2:+59638057 Msa0261330:intron
GATGCAGAACTTTGGAGCCA+TGG 0.601687 2_2:+59639593 Msa0261330:CDS
TAAATCGTCACTGTAATGTG+GGG 0.612933 2_2:+59639620 Msa0261330:exon
ATGTAACTAGGTACGGCTGT+TGG 0.615444 2_2:+59637900 Msa0261330:CDS
TTTGCAGGTCTTGAAAGGTG+TGG 0.623855 2_2:+59638056 Msa0261330:intron
TGTATGCATCCATAAAAGGA+AGG 0.631015 2_2:-59639457 None:intergenic
TGATTTCTGCAAATTTACCA+GGG 0.643638 2_2:+59639138 Msa0261330:CDS
ATGGACTAAGGAAAGGCACA+TGG 0.649764 2_2:+59637846 Msa0261330:CDS
AATAAGTCAGACGCTAAACG+TGG 0.650420 2_2:+59639221 Msa0261330:CDS
AAATCGTCACTGTAATGTGG+GGG 0.656582 2_2:+59639621 Msa0261330:exon
CAATTCTTAGTATGAGTGTG+TGG 0.680103 2_2:-59637753 None:intergenic
GAAAGGCACATGGACACCTG+AGG 0.692550 2_2:+59637856 Msa0261330:CDS
GTAGATGGTTGTGAAGATGG+TGG 0.739269 2_2:-59639350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTAACAAAATAAAAAA+TGG + chr2_2:59639784-59639803 Msa0261330:three_prime_UTR 10.0%
!!! TTTTGTAACAAAATAAAAAA+TGG + chr2_2:59639784-59639803 Msa0261330:three_prime_UTR 10.0%
!!! TTTTAACAACAATTCAAATA+TGG - chr2_2:59638357-59638376 None:intergenic 15.0%
!! CATATTATGTAAGAAATAAA+GGG - chr2_2:59639067-59639086 None:intergenic 15.0%
!! TCATATTATGTAAGAAATAA+AGG - chr2_2:59639068-59639087 None:intergenic 15.0%
!!! TTTATTTCTTACATAATATG+AGG + chr2_2:59639067-59639086 Msa0261330:intron 15.0%
!!! TTATTTCTTACATAATATGA+GGG + chr2_2:59639068-59639087 Msa0261330:intron 15.0%
!! AAATGATGTTATATTATCTA+CGG - chr2_2:59639667-59639686 None:intergenic 15.0%
!!! TCTTTTGTAACAAAAAAAAA+TGG + chr2_2:59639755-59639774 Msa0261330:three_prime_UTR 15.0%
!!! TTTTAACAACAATTCAAATA+TGG - chr2_2:59638357-59638376 None:intergenic 15.0%
!! CATATTATGTAAGAAATAAA+GGG - chr2_2:59639067-59639086 None:intergenic 15.0%
!! TCATATTATGTAAGAAATAA+AGG - chr2_2:59639068-59639087 None:intergenic 15.0%
!!! TTTATTTCTTACATAATATG+AGG + chr2_2:59639067-59639086 Msa0261330:intron 15.0%
!!! TTATTTCTTACATAATATGA+GGG + chr2_2:59639068-59639087 Msa0261330:intron 15.0%
!! AAATGATGTTATATTATCTA+CGG - chr2_2:59639667-59639686 None:intergenic 15.0%
!!! TCTTTTGTAACAAAAAAAAA+TGG + chr2_2:59639755-59639774 Msa0261330:three_prime_UTR 15.0%
!!! TTTTTTATACCTGCAAATTT+AGG - chr2_2:59637941-59637960 None:intergenic 20.0%
!! AATTTATGTGTGATATAGAT+TGG + chr2_2:59637975-59637994 Msa0261330:intron 20.0%
!! ATTTATGTGTGATATAGATT+GGG + chr2_2:59637976-59637995 Msa0261330:intron 20.0%
!! AAAAAATAGAGTGATTTGAT+AGG - chr2_2:59638239-59638258 None:intergenic 20.0%
!! TTGAAATAAACAATATTTGG+TGG - chr2_2:59638299-59638318 None:intergenic 20.0%
!! GTGTTGAAATAAACAATATT+TGG - chr2_2:59638302-59638321 None:intergenic 20.0%
!!! ATTGCAATGTTATTTAAGAT+GGG - chr2_2:59638468-59638487 None:intergenic 20.0%
!!! TATTGCAATGTTATTTAAGA+TGG - chr2_2:59638469-59638488 None:intergenic 20.0%
!!! TAAGTGATACTTTTTCTAAA+AGG - chr2_2:59638573-59638592 None:intergenic 20.0%
!! CAAAAACTAAAATAATCAGA+GGG - chr2_2:59638741-59638760 None:intergenic 20.0%
!! AAATAAAGGGAAATGTTAAT+CGG - chr2_2:59639054-59639073 None:intergenic 20.0%
!! ATTTATATTAATTGTGCAGA+TGG + chr2_2:59639111-59639130 Msa0261330:intron 20.0%
!! ATAATGAGATAAAAAACTAC+TGG + chr2_2:59639168-59639187 Msa0261330:CDS 20.0%
!!! CTTTATAAGAGTCTTTTTTA+TGG - chr2_2:59639201-59639220 None:intergenic 20.0%
!!! ATTTTTTGAATTTGAGTCTT+TGG - chr2_2:59639258-59639277 None:intergenic 20.0%
!! AGTAATATAGAATCTTCATT+TGG - chr2_2:59639545-59639564 None:intergenic 20.0%
!! AATGATGTTATATTATCTAC+GGG - chr2_2:59639666-59639685 None:intergenic 20.0%
!! TTATAAAAACAACACCAAAT+AGG - chr2_2:59639694-59639713 None:intergenic 20.0%
!!! TGTTGTACTTTGAAATAAAA+TGG + chr2_2:59639728-59639747 Msa0261330:three_prime_UTR 20.0%
!!! TTTTTTATACCTGCAAATTT+AGG - chr2_2:59637941-59637960 None:intergenic 20.0%
!! AATTTATGTGTGATATAGAT+TGG + chr2_2:59637975-59637994 Msa0261330:intron 20.0%
!! ATTTATGTGTGATATAGATT+GGG + chr2_2:59637976-59637995 Msa0261330:intron 20.0%
!! AAAAAATAGAGTGATTTGAT+AGG - chr2_2:59638239-59638258 None:intergenic 20.0%
!! TTGAAATAAACAATATTTGG+TGG - chr2_2:59638299-59638318 None:intergenic 20.0%
!! GTGTTGAAATAAACAATATT+TGG - chr2_2:59638302-59638321 None:intergenic 20.0%
!!! ATTGCAATGTTATTTAAGAT+GGG - chr2_2:59638468-59638487 None:intergenic 20.0%
!!! TATTGCAATGTTATTTAAGA+TGG - chr2_2:59638469-59638488 None:intergenic 20.0%
!!! TAAGTGATACTTTTTCTAAA+AGG - chr2_2:59638573-59638592 None:intergenic 20.0%
!! CAAAAACTAAAATAATCAGA+GGG - chr2_2:59638741-59638760 None:intergenic 20.0%
!! AAATAAAGGGAAATGTTAAT+CGG - chr2_2:59639054-59639073 None:intergenic 20.0%
!! ATTTATATTAATTGTGCAGA+TGG + chr2_2:59639111-59639130 Msa0261330:intron 20.0%
!! ATAATGAGATAAAAAACTAC+TGG + chr2_2:59639168-59639187 Msa0261330:CDS 20.0%
!!! CTTTATAAGAGTCTTTTTTA+TGG - chr2_2:59639201-59639220 None:intergenic 20.0%
!!! ATTTTTTGAATTTGAGTCTT+TGG - chr2_2:59639258-59639277 None:intergenic 20.0%
!! AGTAATATAGAATCTTCATT+TGG - chr2_2:59639545-59639564 None:intergenic 20.0%
!! AATGATGTTATATTATCTAC+GGG - chr2_2:59639666-59639685 None:intergenic 20.0%
!! TTATAAAAACAACACCAAAT+AGG - chr2_2:59639694-59639713 None:intergenic 20.0%
!!! TGTTGTACTTTGAAATAAAA+TGG + chr2_2:59639728-59639747 Msa0261330:three_prime_UTR 20.0%
!!! TTTTAGTTTTTGTGCTATCT+TGG + chr2_2:59638003-59638022 Msa0261330:intron 25.0%
! ATCAAACTTCACGAAAAATT+GGG + chr2_2:59638164-59638183 Msa0261330:intron 25.0%
!!! ATTCAAATATGGTTTTACCA+TGG - chr2_2:59638346-59638365 None:intergenic 25.0%
!! TTGCAATGTTATTTAAGATG+GGG - chr2_2:59638467-59638486 None:intergenic 25.0%
!! TAGTGAAGAATGATTTTGTT+GGG - chr2_2:59638644-59638663 None:intergenic 25.0%
!! TTAGTGAAGAATGATTTTGT+TGG - chr2_2:59638645-59638664 None:intergenic 25.0%
! GCAAAAACTAAAATAATCAG+AGG - chr2_2:59638742-59638761 None:intergenic 25.0%
! ATGTTGTGGATATAAAGAAA+AGG - chr2_2:59638840-59638859 None:intergenic 25.0%
! TACGTTATATTGAAATGTTG+TGG - chr2_2:59638854-59638873 None:intergenic 25.0%
! ACTAAAAATGTGTTCTATAG+AGG - chr2_2:59639007-59639026 None:intergenic 25.0%
!!! TATAAGAGTCTTTTTTATGG+TGG - chr2_2:59639198-59639217 None:intergenic 25.0%
! AACATTTCTCCAAGTTTATT+GGG - chr2_2:59639299-59639318 None:intergenic 25.0%
! TAACATTTCTCCAAGTTTAT+TGG - chr2_2:59639300-59639319 None:intergenic 25.0%
! ATATAGAATCTTCATTTGGA+GGG - chr2_2:59639541-59639560 None:intergenic 25.0%
! AATATAGAATCTTCATTTGG+AGG - chr2_2:59639542-59639561 None:intergenic 25.0%
! AACATCATTTGATTCCTATT+TGG + chr2_2:59639677-59639696 Msa0261330:three_prime_UTR 25.0%
!!! TTTTAGTTTTTGTGCTATCT+TGG + chr2_2:59638003-59638022 Msa0261330:intron 25.0%
! ATCAAACTTCACGAAAAATT+GGG + chr2_2:59638164-59638183 Msa0261330:intron 25.0%
!!! ATTCAAATATGGTTTTACCA+TGG - chr2_2:59638346-59638365 None:intergenic 25.0%
!! TTGCAATGTTATTTAAGATG+GGG - chr2_2:59638467-59638486 None:intergenic 25.0%
!! TAGTGAAGAATGATTTTGTT+GGG - chr2_2:59638644-59638663 None:intergenic 25.0%
!! TTAGTGAAGAATGATTTTGT+TGG - chr2_2:59638645-59638664 None:intergenic 25.0%
! GCAAAAACTAAAATAATCAG+AGG - chr2_2:59638742-59638761 None:intergenic 25.0%
! ATGTTGTGGATATAAAGAAA+AGG - chr2_2:59638840-59638859 None:intergenic 25.0%
! TACGTTATATTGAAATGTTG+TGG - chr2_2:59638854-59638873 None:intergenic 25.0%
! ACTAAAAATGTGTTCTATAG+AGG - chr2_2:59639007-59639026 None:intergenic 25.0%
!!! TATAAGAGTCTTTTTTATGG+TGG - chr2_2:59639198-59639217 None:intergenic 25.0%
! AACATTTCTCCAAGTTTATT+GGG - chr2_2:59639299-59639318 None:intergenic 25.0%
! TAACATTTCTCCAAGTTTAT+TGG - chr2_2:59639300-59639319 None:intergenic 25.0%
! ATATAGAATCTTCATTTGGA+GGG - chr2_2:59639541-59639560 None:intergenic 25.0%
! AATATAGAATCTTCATTTGG+AGG - chr2_2:59639542-59639561 None:intergenic 25.0%
! AACATCATTTGATTCCTATT+TGG + chr2_2:59639677-59639696 Msa0261330:three_prime_UTR 25.0%
!! TCCATTTTTGTCACAATAAG+GGG - chr2_2:59637831-59637850 None:intergenic 30.0%
!! GTCCATTTTTGTCACAATAA+GGG - chr2_2:59637832-59637851 None:intergenic 30.0%
!! AGTCCATTTTTGTCACAATA+AGG - chr2_2:59637833-59637852 None:intergenic 30.0%
!! ATTGTGACAAAAATGGACTA+AGG + chr2_2:59637834-59637853 Msa0261330:CDS 30.0%
AGTTGATTGCTTATGTAACT+AGG + chr2_2:59637888-59637907 Msa0261330:CDS 30.0%
ATTGCTTATGTAACTAGGTA+CGG + chr2_2:59637893-59637912 Msa0261330:CDS 30.0%
CATCAAACTTCACGAAAAAT+TGG + chr2_2:59638163-59638182 Msa0261330:intron 30.0%
TTCACGAAAAATTGGGTAAT+AGG + chr2_2:59638171-59638190 Msa0261330:intron 30.0%
CATTTATCCTCAAAAATCCA+TGG - chr2_2:59638413-59638432 None:intergenic 30.0%
GATGAATATATCTTCATGCT+TGG - chr2_2:59638548-59638567 None:intergenic 30.0%
!!! GTGATACTTTTTCTAAAAGG+TGG - chr2_2:59638570-59638589 None:intergenic 30.0%
! CATTGTAATGTTACTTGAGA+TGG - chr2_2:59638881-59638900 None:intergenic 30.0%
CATCTCAAGTAACATTACAA+TGG + chr2_2:59638879-59638898 Msa0261330:intron 30.0%
CACTCAAGAGTTACAAATAA+CGG + chr2_2:59638946-59638965 Msa0261330:intron 30.0%
TGGTAAATTTGCAGAAATCA+TGG - chr2_2:59639138-59639157 None:intergenic 30.0%
ATGATTTCTGCAAATTTACC+AGG + chr2_2:59639137-59639156 Msa0261330:CDS 30.0%
TGATTTCTGCAAATTTACCA+GGG + chr2_2:59639138-59639157 Msa0261330:CDS 30.0%
TTCAAAAAATCACCCTACAA+TGG + chr2_2:59639268-59639287 Msa0261330:CDS 30.0%
! TATTGGGTTTTTCCATTGTA+GGG - chr2_2:59639283-59639302 None:intergenic 30.0%
! TTATTGGGTTTTTCCATTGT+AGG - chr2_2:59639284-59639303 None:intergenic 30.0%
ATGGAAAAACCCAATAAACT+TGG + chr2_2:59639287-59639306 Msa0261330:CDS 30.0%
TCAAAGTCATCAAAAAGAGA+AGG - chr2_2:59639437-59639456 None:intergenic 30.0%
TACGAGCTGTCTATTATATA+TGG - chr2_2:59639515-59639534 None:intergenic 30.0%
AATAAATCGTCACTGTAATG+TGG + chr2_2:59639618-59639637 Msa0261330:exon 30.0%
ATAAATCGTCACTGTAATGT+GGG + chr2_2:59639619-59639638 Msa0261330:exon 30.0%
!! TCCATTTTTGTCACAATAAG+GGG - chr2_2:59637831-59637850 None:intergenic 30.0%
!! GTCCATTTTTGTCACAATAA+GGG - chr2_2:59637832-59637851 None:intergenic 30.0%
!! AGTCCATTTTTGTCACAATA+AGG - chr2_2:59637833-59637852 None:intergenic 30.0%
!! ATTGTGACAAAAATGGACTA+AGG + chr2_2:59637834-59637853 Msa0261330:CDS 30.0%
AGTTGATTGCTTATGTAACT+AGG + chr2_2:59637888-59637907 Msa0261330:CDS 30.0%
ATTGCTTATGTAACTAGGTA+CGG + chr2_2:59637893-59637912 Msa0261330:CDS 30.0%
CATCAAACTTCACGAAAAAT+TGG + chr2_2:59638163-59638182 Msa0261330:intron 30.0%
TTCACGAAAAATTGGGTAAT+AGG + chr2_2:59638171-59638190 Msa0261330:intron 30.0%
CATTTATCCTCAAAAATCCA+TGG - chr2_2:59638413-59638432 None:intergenic 30.0%
GATGAATATATCTTCATGCT+TGG - chr2_2:59638548-59638567 None:intergenic 30.0%
!!! GTGATACTTTTTCTAAAAGG+TGG - chr2_2:59638570-59638589 None:intergenic 30.0%
! CATTGTAATGTTACTTGAGA+TGG - chr2_2:59638881-59638900 None:intergenic 30.0%
CATCTCAAGTAACATTACAA+TGG + chr2_2:59638879-59638898 Msa0261330:intron 30.0%
CACTCAAGAGTTACAAATAA+CGG + chr2_2:59638946-59638965 Msa0261330:intron 30.0%
TGGTAAATTTGCAGAAATCA+TGG - chr2_2:59639138-59639157 None:intergenic 30.0%
ATGATTTCTGCAAATTTACC+AGG + chr2_2:59639137-59639156 Msa0261330:CDS 30.0%
TGATTTCTGCAAATTTACCA+GGG + chr2_2:59639138-59639157 Msa0261330:CDS 30.0%
TTCAAAAAATCACCCTACAA+TGG + chr2_2:59639268-59639287 Msa0261330:CDS 30.0%
! TATTGGGTTTTTCCATTGTA+GGG - chr2_2:59639283-59639302 None:intergenic 30.0%
! TTATTGGGTTTTTCCATTGT+AGG - chr2_2:59639284-59639303 None:intergenic 30.0%
ATGGAAAAACCCAATAAACT+TGG + chr2_2:59639287-59639306 Msa0261330:CDS 30.0%
TCAAAGTCATCAAAAAGAGA+AGG - chr2_2:59639437-59639456 None:intergenic 30.0%
TACGAGCTGTCTATTATATA+TGG - chr2_2:59639515-59639534 None:intergenic 30.0%
AATAAATCGTCACTGTAATG+TGG + chr2_2:59639618-59639637 Msa0261330:exon 30.0%
ATAAATCGTCACTGTAATGT+GGG + chr2_2:59639619-59639638 Msa0261330:exon 30.0%
CAATTCTTAGTATGAGTGTG+TGG - chr2_2:59637756-59637775 None:intergenic 35.0%
CACACACTCATACTAAGAAT+TGG + chr2_2:59637754-59637773 Msa0261330:five_prime_UTR 35.0%
GTTCTCACCATATTCTCTAT+AGG - chr2_2:59637809-59637828 None:intergenic 35.0%
ACCCCTTATTGTGACAAAAA+TGG + chr2_2:59637827-59637846 Msa0261330:CDS 35.0%
!! GACAAAAATGGACTAAGGAA+AGG + chr2_2:59637839-59637858 Msa0261330:CDS 35.0%
! ATCAACTTTTTGTCTTCCTC+AGG - chr2_2:59637875-59637894 None:intergenic 35.0%
!! TTTTGTTTGCAGGTCTTGAA+AGG + chr2_2:59638051-59638070 Msa0261330:intron 35.0%
TAAGGTGGTTGAACTATCTA+AGG + chr2_2:59638093-59638112 Msa0261330:intron 35.0%
TAAGGCCAGATATCAAAAGA+GGG + chr2_2:59638111-59638130 Msa0261330:intron 35.0%
CTCTAATGTATGCACTATAG+AGG + chr2_2:59638270-59638289 Msa0261330:intron 35.0%
!! CAAATATGGTTTTACCATGG+AGG - chr2_2:59638343-59638362 None:intergenic 35.0%
TGGACTTGTAGGTTAATTGT+TGG - chr2_2:59638393-59638412 None:intergenic 35.0%
ACAATTAACCTACAAGTCCA+TGG + chr2_2:59638393-59638412 Msa0261330:intron 35.0%
TCAAAAATCCATGGACTTGT+AGG - chr2_2:59638404-59638423 None:intergenic 35.0%
! TACAAGTCCATGGATTTTTG+AGG + chr2_2:59638403-59638422 Msa0261330:intron 35.0%
ATTTACACTCGTGCACTTAA+TGG + chr2_2:59638594-59638613 Msa0261330:intron 35.0%
TAAAATAATCAGAGGGTTCC+AGG - chr2_2:59638734-59638753 None:intergenic 35.0%
! GTTTTTGCACCATTAACTCA+AGG + chr2_2:59638754-59638773 Msa0261330:intron 35.0%
! TCTAGAGTGGTACACAATTT+CGG - chr2_2:59638919-59638938 None:intergenic 35.0%
ATCCTCTTGCATAGCATTAA+TGG + chr2_2:59639379-59639398 Msa0261330:CDS 35.0%
ATCCATTAATGCTATGCAAG+AGG - chr2_2:59639384-59639403 None:intergenic 35.0%
! TGACTTTGACCTTCCTTTTA+TGG + chr2_2:59639448-59639467 Msa0261330:CDS 35.0%
TGTATGCATCCATAAAAGGA+AGG - chr2_2:59639460-59639479 None:intergenic 35.0%
! TCCTTTTATGGATGCATACA+TGG + chr2_2:59639460-59639479 Msa0261330:CDS 35.0%
TCCATGTATGCATCCATAAA+AGG - chr2_2:59639464-59639483 None:intergenic 35.0%
AGACTGTGAGTGAAAATTTC+TGG + chr2_2:59639483-59639502 Msa0261330:CDS 35.0%
!! CAGTGACGATTTATTTTCCA+TGG - chr2_2:59639613-59639632 None:intergenic 35.0%
TAAATCGTCACTGTAATGTG+GGG + chr2_2:59639620-59639639 Msa0261330:exon 35.0%
CAATTCTTAGTATGAGTGTG+TGG - chr2_2:59637756-59637775 None:intergenic 35.0%
CACACACTCATACTAAGAAT+TGG + chr2_2:59637754-59637773 Msa0261330:five_prime_UTR 35.0%
GTTCTCACCATATTCTCTAT+AGG - chr2_2:59637809-59637828 None:intergenic 35.0%
ACCCCTTATTGTGACAAAAA+TGG + chr2_2:59637827-59637846 Msa0261330:CDS 35.0%
!! GACAAAAATGGACTAAGGAA+AGG + chr2_2:59637839-59637858 Msa0261330:CDS 35.0%
! ATCAACTTTTTGTCTTCCTC+AGG - chr2_2:59637875-59637894 None:intergenic 35.0%
!! TTTTGTTTGCAGGTCTTGAA+AGG + chr2_2:59638051-59638070 Msa0261330:intron 35.0%
TAAGGTGGTTGAACTATCTA+AGG + chr2_2:59638093-59638112 Msa0261330:intron 35.0%
TAAGGCCAGATATCAAAAGA+GGG + chr2_2:59638111-59638130 Msa0261330:intron 35.0%
CTCTAATGTATGCACTATAG+AGG + chr2_2:59638270-59638289 Msa0261330:intron 35.0%
!! CAAATATGGTTTTACCATGG+AGG - chr2_2:59638343-59638362 None:intergenic 35.0%
TGGACTTGTAGGTTAATTGT+TGG - chr2_2:59638393-59638412 None:intergenic 35.0%
ACAATTAACCTACAAGTCCA+TGG + chr2_2:59638393-59638412 Msa0261330:intron 35.0%
TCAAAAATCCATGGACTTGT+AGG - chr2_2:59638404-59638423 None:intergenic 35.0%
! TACAAGTCCATGGATTTTTG+AGG + chr2_2:59638403-59638422 Msa0261330:intron 35.0%
ATTTACACTCGTGCACTTAA+TGG + chr2_2:59638594-59638613 Msa0261330:intron 35.0%
TAAAATAATCAGAGGGTTCC+AGG - chr2_2:59638734-59638753 None:intergenic 35.0%
! GTTTTTGCACCATTAACTCA+AGG + chr2_2:59638754-59638773 Msa0261330:intron 35.0%
! TCTAGAGTGGTACACAATTT+CGG - chr2_2:59638919-59638938 None:intergenic 35.0%
ATCCTCTTGCATAGCATTAA+TGG + chr2_2:59639379-59639398 Msa0261330:CDS 35.0%
ATCCATTAATGCTATGCAAG+AGG - chr2_2:59639384-59639403 None:intergenic 35.0%
! TGACTTTGACCTTCCTTTTA+TGG + chr2_2:59639448-59639467 Msa0261330:CDS 35.0%
TGTATGCATCCATAAAAGGA+AGG - chr2_2:59639460-59639479 None:intergenic 35.0%
! TCCTTTTATGGATGCATACA+TGG + chr2_2:59639460-59639479 Msa0261330:CDS 35.0%
TCCATGTATGCATCCATAAA+AGG - chr2_2:59639464-59639483 None:intergenic 35.0%
AGACTGTGAGTGAAAATTTC+TGG + chr2_2:59639483-59639502 Msa0261330:CDS 35.0%
!! CAGTGACGATTTATTTTCCA+TGG - chr2_2:59639613-59639632 None:intergenic 35.0%
TAAATCGTCACTGTAATGTG+GGG + chr2_2:59639620-59639639 Msa0261330:exon 35.0%
CATATTCTCTATAGGCTCGT+TGG - chr2_2:59637801-59637820 None:intergenic 40.0%
CAACGAGCCTATAGAGAATA+TGG + chr2_2:59637799-59637818 Msa0261330:exon 40.0%
CGACAACTACCTAAATTTGC+AGG + chr2_2:59637929-59637948 Msa0261330:CDS 40.0%
!! TCACGAGAGATTTTGTTTGC+AGG + chr2_2:59638041-59638060 Msa0261330:intron 40.0%
CTAAGGCCAGATATCAAAAG+AGG + chr2_2:59638110-59638129 Msa0261330:intron 40.0%
! AAGCTCCCTCTTTTGATATC+TGG - chr2_2:59638119-59638138 None:intergenic 40.0%
!! ATATGGTTTTACCATGGAGG+AGG - chr2_2:59638340-59638359 None:intergenic 40.0%
! CATGTCTACGTTTTTACACC+TGG + chr2_2:59638713-59638732 Msa0261330:intron 40.0%
TCTCGATCTCCTTGAGTTAA+TGG - chr2_2:59638766-59638785 None:intergenic 40.0%
!! AGAAAAGGTGTCGACAATGA+CGG - chr2_2:59638825-59638844 None:intergenic 40.0%
!! TGAGTGAGAGTATTCTAGAG+TGG - chr2_2:59638932-59638951 None:intergenic 40.0%
TAGTATCCTTAACCAGTGTC+CGG + chr2_2:59639023-59639042 Msa0261330:intron 40.0%
ATCTCATTATCTGTTCTCCC+TGG - chr2_2:59639158-59639177 None:intergenic 40.0%
AATAAGTCAGACGCTAAACG+TGG + chr2_2:59639221-59639240 Msa0261330:CDS 40.0%
CGCTAAACGTGGAATGAAAA+AGG + chr2_2:59639232-59639251 Msa0261330:CDS 40.0%
!! AGATGGTGGACTCGTAATAT+TGG - chr2_2:59639339-59639358 None:intergenic 40.0%
CTTGTAGATGGTTGTGAAGA+TGG - chr2_2:59639356-59639375 None:intergenic 40.0%
CAAAGTTCTGCATCGTATAC+AGG - chr2_2:59639587-59639606 None:intergenic 40.0%
CTGTATACGATGCAGAACTT+TGG + chr2_2:59639585-59639604 Msa0261330:CDS 40.0%
AAATCGTCACTGTAATGTGG+GGG + chr2_2:59639621-59639640 Msa0261330:exon 40.0%
CATATTCTCTATAGGCTCGT+TGG - chr2_2:59637801-59637820 None:intergenic 40.0%
CAACGAGCCTATAGAGAATA+TGG + chr2_2:59637799-59637818 Msa0261330:exon 40.0%
CGACAACTACCTAAATTTGC+AGG + chr2_2:59637929-59637948 Msa0261330:CDS 40.0%
!! TCACGAGAGATTTTGTTTGC+AGG + chr2_2:59638041-59638060 Msa0261330:intron 40.0%
CTAAGGCCAGATATCAAAAG+AGG + chr2_2:59638110-59638129 Msa0261330:intron 40.0%
! AAGCTCCCTCTTTTGATATC+TGG - chr2_2:59638119-59638138 None:intergenic 40.0%
!! ATATGGTTTTACCATGGAGG+AGG - chr2_2:59638340-59638359 None:intergenic 40.0%
! CATGTCTACGTTTTTACACC+TGG + chr2_2:59638713-59638732 Msa0261330:intron 40.0%
TCTCGATCTCCTTGAGTTAA+TGG - chr2_2:59638766-59638785 None:intergenic 40.0%
!! AGAAAAGGTGTCGACAATGA+CGG - chr2_2:59638825-59638844 None:intergenic 40.0%
!! TGAGTGAGAGTATTCTAGAG+TGG - chr2_2:59638932-59638951 None:intergenic 40.0%
TAGTATCCTTAACCAGTGTC+CGG + chr2_2:59639023-59639042 Msa0261330:intron 40.0%
ATCTCATTATCTGTTCTCCC+TGG - chr2_2:59639158-59639177 None:intergenic 40.0%
AATAAGTCAGACGCTAAACG+TGG + chr2_2:59639221-59639240 Msa0261330:CDS 40.0%
CGCTAAACGTGGAATGAAAA+AGG + chr2_2:59639232-59639251 Msa0261330:CDS 40.0%
!! AGATGGTGGACTCGTAATAT+TGG - chr2_2:59639339-59639358 None:intergenic 40.0%
CTTGTAGATGGTTGTGAAGA+TGG - chr2_2:59639356-59639375 None:intergenic 40.0%
CAAAGTTCTGCATCGTATAC+AGG - chr2_2:59639587-59639606 None:intergenic 40.0%
CTGTATACGATGCAGAACTT+TGG + chr2_2:59639585-59639604 Msa0261330:CDS 40.0%
AAATCGTCACTGTAATGTGG+GGG + chr2_2:59639621-59639640 Msa0261330:exon 40.0%
! ATGGACTAAGGAAAGGCACA+TGG + chr2_2:59637846-59637865 Msa0261330:CDS 45.0%
ATGTAACTAGGTACGGCTGT+TGG + chr2_2:59637900-59637919 Msa0261330:CDS 45.0%
TTTGCAGGTCTTGAAAGGTG+TGG + chr2_2:59638056-59638075 Msa0261330:intron 45.0%
! TTGCAGGTCTTGAAAGGTGT+GGG + chr2_2:59638057-59638076 Msa0261330:intron 45.0%
GTGGGAAGAGTTGTAGACTA+AGG + chr2_2:59638075-59638094 Msa0261330:CDS 45.0%
GGAAGAGTTGTAGACTAAGG+TGG + chr2_2:59638078-59638097 Msa0261330:intron 45.0%
GGAGTCAGGATCGTAATACA+AGG - chr2_2:59638804-59638823 None:intergenic 45.0%
AGTATCCTTAACCAGTGTCC+GGG + chr2_2:59639024-59639043 Msa0261330:intron 45.0%
GTAGATGGTTGTGAAGATGG+TGG - chr2_2:59639353-59639372 None:intergenic 45.0%
CAAGAGGATGCACTTGTAGA+TGG - chr2_2:59639368-59639387 None:intergenic 45.0%
! ATGGACTAAGGAAAGGCACA+TGG + chr2_2:59637846-59637865 Msa0261330:CDS 45.0%
ATGTAACTAGGTACGGCTGT+TGG + chr2_2:59637900-59637919 Msa0261330:CDS 45.0%
TTTGCAGGTCTTGAAAGGTG+TGG + chr2_2:59638056-59638075 Msa0261330:intron 45.0%
! TTGCAGGTCTTGAAAGGTGT+GGG + chr2_2:59638057-59638076 Msa0261330:intron 45.0%
GTGGGAAGAGTTGTAGACTA+AGG + chr2_2:59638075-59638094 Msa0261330:CDS 45.0%
GGAAGAGTTGTAGACTAAGG+TGG + chr2_2:59638078-59638097 Msa0261330:intron 45.0%
GGAGTCAGGATCGTAATACA+AGG - chr2_2:59638804-59638823 None:intergenic 45.0%
AGTATCCTTAACCAGTGTCC+GGG + chr2_2:59639024-59639043 Msa0261330:intron 45.0%
GTAGATGGTTGTGAAGATGG+TGG - chr2_2:59639353-59639372 None:intergenic 45.0%
CAAGAGGATGCACTTGTAGA+TGG - chr2_2:59639368-59639387 None:intergenic 45.0%
CTAGGTACGGCTGTTGGAAT+TGG + chr2_2:59637906-59637925 Msa0261330:CDS 50.0%
ATGGAGGAGGTGATAGAGCT+CGG - chr2_2:59638327-59638346 None:intergenic 50.0%
GTATCCTTAACCAGTGTCCG+GGG + chr2_2:59639025-59639044 Msa0261330:intron 50.0%
TATCCTTAACCAGTGTCCGG+GGG + chr2_2:59639026-59639045 Msa0261330:intron 50.0%
! GAAATGTTAATCGGTGCCCC+CGG - chr2_2:59639045-59639064 None:intergenic 50.0%
!! GATGCAGAACTTTGGAGCCA+TGG + chr2_2:59639593-59639612 Msa0261330:CDS 50.0%
CTAGGTACGGCTGTTGGAAT+TGG + chr2_2:59637906-59637925 Msa0261330:CDS 50.0%
ATGGAGGAGGTGATAGAGCT+CGG - chr2_2:59638327-59638346 None:intergenic 50.0%
GTATCCTTAACCAGTGTCCG+GGG + chr2_2:59639025-59639044 Msa0261330:intron 50.0%
TATCCTTAACCAGTGTCCGG+GGG + chr2_2:59639026-59639045 Msa0261330:intron 50.0%
! GAAATGTTAATCGGTGCCCC+CGG - chr2_2:59639045-59639064 None:intergenic 50.0%
!! GATGCAGAACTTTGGAGCCA+TGG + chr2_2:59639593-59639612 Msa0261330:CDS 50.0%
! GAAAGGCACATGGACACCTG+AGG + chr2_2:59637856-59637875 Msa0261330:CDS 55.0%
GAGCTCTATCACCTCCTCCA+TGG + chr2_2:59638326-59638345 Msa0261330:intron 55.0%
! GTGTCGACAATGACGGAGTC+AGG - chr2_2:59638818-59638837 None:intergenic 55.0%
! GAAAGGCACATGGACACCTG+AGG + chr2_2:59637856-59637875 Msa0261330:CDS 55.0%
GAGCTCTATCACCTCCTCCA+TGG + chr2_2:59638326-59638345 Msa0261330:intron 55.0%
! GTGTCGACAATGACGGAGTC+AGG - chr2_2:59638818-59638837 None:intergenic 55.0%
! GTGCCCCCGGACACTGGTTA+AGG - chr2_2:59639032-59639051 None:intergenic 65.0%
! TAATCGGTGCCCCCGGACAC+TGG - chr2_2:59639038-59639057 None:intergenic 65.0%
! GTGCCCCCGGACACTGGTTA+AGG - chr2_2:59639032-59639051 None:intergenic 65.0%
! TAATCGGTGCCCCCGGACAC+TGG - chr2_2:59639038-59639057 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 59637692 59639815 59637692 ID=Msa0261330;Name=Msa0261330
chr2_2 mRNA 59637692 59639815 59637692 ID=Msa0261330-mRNA-1;Parent=Msa0261330;Name=Msa0261330-mRNA-1;_AED=0.26;_eAED=0.26;_QI=126|0.5|0.66|1|1|1|3|193|219
chr2_2 exon 59637692 59637950 59637692 ID=Msa0261330-mRNA-1:exon:18370;Parent=Msa0261330-mRNA-1
chr2_2 exon 59638063 59638096 59638063 ID=Msa0261330-mRNA-1:exon:18371;Parent=Msa0261330-mRNA-1
chr2_2 exon 59639130 59639815 59639130 ID=Msa0261330-mRNA-1:exon:18372;Parent=Msa0261330-mRNA-1
chr2_2 five_prime_UTR 59637692 59637817 59637692 ID=Msa0261330-mRNA-1:five_prime_utr;Parent=Msa0261330-mRNA-1
chr2_2 CDS 59637818 59637950 59637818 ID=Msa0261330-mRNA-1:cds;Parent=Msa0261330-mRNA-1
chr2_2 CDS 59638063 59638096 59638063 ID=Msa0261330-mRNA-1:cds;Parent=Msa0261330-mRNA-1
chr2_2 CDS 59639130 59639622 59639130 ID=Msa0261330-mRNA-1:cds;Parent=Msa0261330-mRNA-1
chr2_2 three_prime_UTR 59639623 59639815 59639623 ID=Msa0261330-mRNA-1:three_prime_utr;Parent=Msa0261330-mRNA-1
Gene Sequence

>Msa0261330

ATGGTGAGAACCCCTTATTGTGACAAAAATGGACTAAGGAAAGGCACATGGACACCTGAGGAAGACAAAAAGTTGATTGCTTATGTAACTAGGTACGGCTGTTGGAATTGGCGACAACTACCTAAATTTGCAGGTCTTGAAAGGTGTGGGAAGAGTTGTAGACTAAGATGGACCATGATTTCTGCAAATTTACCAGGGAGAACAGATAATGAGATAAAAAACTACTGGCACACCACCATAAAAAAGACTCTTATAAAGAATAAGTCAGACGCTAAACGTGGAATGAAAAAGGCCAAAGACTCAAATTCAAAAAATCACCCTACAATGGAAAAACCCAATAAACTTGGAGAAATGTTAGAGAACAACAGTGATTCCAATATTACGAGTCCACCATCTTCACAACCATCTACAAGTGCATCCTCTTGCATAGCATTAATGGATACTGCAGCTACTACAATATCATATGAAAATCCTTCTCTTTTTGATGACTTTGACCTTCCTTTTATGGATGCATACATGGAGACTGTGAGTGAAAATTTCTGGACAGAGCCATATATAATAGACAGCTCGTATGTCCCTCCAAATGAAGATTCTATATTACTTGAACATGAATACTTTAGTCCTGTATACGATGCAGAACTTTGGAGCCATGGAAAATAA
Protein sequence

>Msa0261330

MVRTPYCDKNGLRKGTWTPEEDKKLIAYVTRYGCWNWRQLPKFAGLERCGKSCRLRWTMISANLPGRTDNEIKNYWHTTIKKTLIKNKSDAKRGMKKAKDSNSKNHPTMEKPNKLGEMLENNSDSNITSPPSSQPSTSASSCIALMDTAATTISYENPSLFDDFDLPFMDAYMETVSENFWTEPYIIDSSYVPPNEDSILLEHEYFSPVYDAELWSHGK*