Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415520 | RHN68049.1 | 94.080 | 929 | 46 | 3 | 3 | 929 | 1 | 922 | 0.0 | 1789 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415520 | sp|B6SFA4|MAA3_ARATH | 38.462 | 312 | 169 | 8 | 576 | 879 | 454 | 750 | 7.79e-51 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415520 | A0A396IQU7 | 94.080 | 929 | 46 | 3 | 3 | 929 | 1 | 922 | 0.0 | 1789 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0415520 | Msa1026510 | 0.806036 | 9.998513e-50 | -8.615850e-47 |
| Msa0415520 | Msa1074580 | 0.804152 | 2.477916e-49 | -8.615850e-47 |
| Msa0415520 | Msa1154080 | 0.815472 | 9.085330e-52 | -8.615850e-47 |
| Msa0415520 | Msa1432410 | 0.972127 | 2.917328e-134 | -8.615850e-47 |
| Msa0415520 | Msa1439540 | 0.941227 | 6.002691e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415520 | MtrunA17_Chr3g0109541 | 94.080 | 929 | 46 | 3 | 3 | 929 | 1 | 922 | 0.0 | 1789 |
| Msa0415520 | MtrunA17_Chr5g0433371 | 58.842 | 933 | 354 | 11 | 8 | 929 | 8 | 921 | 0.0 | 1056 |
| Msa0415520 | MtrunA17_Chr5g0433471 | 59.677 | 930 | 344 | 14 | 10 | 929 | 13 | 921 | 0.0 | 1028 |
| Msa0415520 | MtrunA17_Chr5g0433321 | 56.163 | 933 | 358 | 13 | 1 | 923 | 1 | 892 | 0.0 | 1008 |
| Msa0415520 | MtrunA17_Chr5g0433511 | 54.074 | 945 | 358 | 19 | 16 | 923 | 10 | 915 | 0.0 | 897 |
| Msa0415520 | MtrunA17_Chr5g0433361 | 49.526 | 949 | 354 | 19 | 10 | 920 | 22 | 883 | 0.0 | 820 |
| Msa0415520 | MtrunA17_Chr3g0109551 | 45.090 | 947 | 457 | 12 | 18 | 914 | 13 | 946 | 0.0 | 768 |
| Msa0415520 | MtrunA17_Chr8g0375181 | 38.745 | 924 | 485 | 20 | 14 | 907 | 79 | 951 | 0.0 | 607 |
| Msa0415520 | MtrunA17_Chr5g0433421 | 60.444 | 541 | 193 | 7 | 391 | 928 | 483 | 1005 | 0.0 | 605 |
| Msa0415520 | MtrunA17_Chr5g0433421 | 47.421 | 504 | 233 | 11 | 10 | 504 | 9 | 489 | 1.10e-126 | 407 |
| Msa0415520 | MtrunA17_Chr8g0375151 | 39.731 | 891 | 452 | 20 | 47 | 907 | 8 | 843 | 0.0 | 587 |
| Msa0415520 | MtrunA17_Chr3g0094211 | 35.829 | 935 | 488 | 21 | 17 | 913 | 17 | 877 | 0.0 | 549 |
| Msa0415520 | MtrunA17_Chr8g0375191 | 38.017 | 918 | 474 | 18 | 17 | 907 | 25 | 874 | 3.06e-178 | 573 |
| Msa0415520 | MtrunA17_Chr5g0433351 | 45.315 | 523 | 220 | 9 | 10 | 527 | 9 | 470 | 8.67e-126 | 389 |
| Msa0415520 | MtrunA17_Chr5g0433341 | 68.449 | 187 | 58 | 1 | 576 | 761 | 5 | 191 | 6.74e-85 | 270 |
| Msa0415520 | MtrunA17_Chr8g0375871 | 31.519 | 698 | 387 | 21 | 16 | 681 | 21 | 659 | 1.23e-82 | 292 |
| Msa0415520 | MtrunA17_Chr8g0375861 | 31.519 | 698 | 387 | 21 | 16 | 681 | 21 | 659 | 1.23e-82 | 292 |
| Msa0415520 | MtrunA17_Chr5g0433331 | 71.166 | 163 | 47 | 0 | 767 | 929 | 2 | 164 | 1.66e-72 | 236 |
| Msa0415520 | MtrunA17_Chr8g0343741 | 36.391 | 338 | 196 | 10 | 555 | 886 | 943 | 1267 | 2.36e-46 | 181 |
| Msa0415520 | MtrunA17_Chr5g0422511 | 35.577 | 312 | 189 | 7 | 576 | 885 | 450 | 751 | 3.96e-45 | 175 |
| Msa0415520 | MtrunA17_Chr3g0117771 | 51.613 | 186 | 76 | 5 | 39 | 223 | 124 | 296 | 5.53e-45 | 164 |
| Msa0415520 | MtrunA17_Chr1g0173701 | 33.758 | 314 | 167 | 9 | 594 | 887 | 82 | 374 | 1.28e-42 | 160 |
| Msa0415520 | MtrunA17_Chr2g0334291 | 36.644 | 292 | 161 | 7 | 608 | 885 | 1791 | 2072 | 9.64e-41 | 163 |
| Msa0415520 | MtrunA17_Chr5g0400101 | 36.076 | 316 | 180 | 8 | 573 | 882 | 607 | 906 | 9.32e-40 | 159 |
| Msa0415520 | MtrunA17_Chr7g0257921 | 35.783 | 313 | 167 | 13 | 586 | 887 | 352 | 641 | 2.17e-32 | 134 |
| Msa0415520 | MtrunA17_Chr5g0435821 | 59.048 | 105 | 38 | 1 | 801 | 905 | 11 | 110 | 4.73e-31 | 129 |
| Msa0415520 | MtrunA17_Chr2g0304151 | 31.250 | 336 | 190 | 14 | 555 | 873 | 496 | 807 | 2.25e-24 | 110 |
| Msa0415520 | MtrunA17_Chr5g0394941 | 31.250 | 336 | 190 | 14 | 555 | 873 | 496 | 807 | 2.35e-24 | 110 |
| Msa0415520 | MtrunA17_Chr1g0165651 | 32.099 | 324 | 182 | 13 | 558 | 862 | 607 | 911 | 4.12e-24 | 109 |
| Msa0415520 | MtrunA17_Chr1g0165031 | 28.832 | 274 | 158 | 11 | 608 | 864 | 1130 | 1383 | 1.24e-17 | 88.6 |
| Msa0415520 | MtrunA17_Chr4g0030281 | 48.571 | 105 | 50 | 2 | 39 | 143 | 329 | 429 | 1.52e-17 | 87.8 |
| Msa0415520 | MtrunA17_Chr7g0228141 | 29.259 | 270 | 147 | 12 | 609 | 858 | 509 | 754 | 4.10e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415520 | AT1G65810.2 | 45.976 | 907 | 393 | 18 | 18 | 907 | 22 | 848 | 0.0 | 729 |
| Msa0415520 | AT1G65810.1 | 45.976 | 907 | 393 | 18 | 18 | 907 | 22 | 848 | 0.0 | 729 |
| Msa0415520 | AT1G65810.3 | 45.976 | 907 | 393 | 18 | 18 | 907 | 22 | 848 | 0.0 | 728 |
| Msa0415520 | AT5G37150.1 | 43.919 | 888 | 418 | 17 | 17 | 901 | 8 | 818 | 0.0 | 686 |
| Msa0415520 | AT1G65780.1 | 43.626 | 910 | 440 | 21 | 18 | 909 | 11 | 865 | 0.0 | 671 |
| Msa0415520 | AT5G52090.1 | 47.042 | 710 | 319 | 10 | 194 | 901 | 1 | 655 | 0.0 | 620 |
| Msa0415520 | AT5G37140.1 | 46.448 | 732 | 332 | 14 | 189 | 919 | 12 | 684 | 0.0 | 599 |
| Msa0415520 | AT4G05540.1 | 45.676 | 740 | 332 | 16 | 138 | 868 | 11 | 689 | 0.0 | 575 |
| Msa0415520 | AT5G37165.1 | 50.694 | 432 | 193 | 8 | 491 | 919 | 4 | 418 | 3.25e-133 | 406 |
| Msa0415520 | AT5G37030.1 | 63.140 | 293 | 99 | 4 | 605 | 895 | 348 | 633 | 2.92e-117 | 372 |
| Msa0415520 | AT5G37030.1 | 36.641 | 393 | 190 | 12 | 17 | 404 | 8 | 346 | 8.42e-55 | 202 |
| Msa0415520 | AT5G37160.1 | 34.360 | 422 | 222 | 10 | 16 | 403 | 16 | 416 | 1.61e-66 | 230 |
| Msa0415520 | AT4G15570.2 | 38.462 | 312 | 169 | 8 | 576 | 879 | 365 | 661 | 3.92e-52 | 196 |
| Msa0415520 | AT4G15570.4 | 38.462 | 312 | 169 | 8 | 576 | 879 | 365 | 661 | 3.92e-52 | 196 |
| Msa0415520 | AT4G15570.3 | 38.462 | 312 | 169 | 8 | 576 | 879 | 454 | 750 | 7.92e-52 | 196 |
| Msa0415520 | AT4G15570.1 | 38.462 | 312 | 169 | 8 | 576 | 879 | 454 | 750 | 7.92e-52 | 196 |
| Msa0415520 | AT2G19120.1 | 38.462 | 312 | 166 | 9 | 584 | 886 | 753 | 1047 | 7.44e-47 | 182 |
| Msa0415520 | AT4G30100.2 | 38.511 | 309 | 162 | 10 | 584 | 882 | 916 | 1206 | 2.06e-46 | 181 |
| Msa0415520 | AT4G30100.1 | 38.511 | 309 | 162 | 10 | 584 | 882 | 916 | 1206 | 2.06e-46 | 181 |
| Msa0415520 | AT1G16800.2 | 38.652 | 282 | 153 | 8 | 608 | 879 | 1719 | 1990 | 9.27e-42 | 167 |
| Msa0415520 | AT1G16800.3 | 38.652 | 282 | 153 | 8 | 608 | 879 | 1649 | 1920 | 1.06e-41 | 167 |
| Msa0415520 | AT1G16800.1 | 38.652 | 282 | 153 | 8 | 608 | 879 | 1607 | 1878 | 1.12e-41 | 167 |
| Msa0415520 | AT5G47010.1 | 35.256 | 312 | 188 | 6 | 573 | 882 | 619 | 918 | 1.79e-39 | 159 |
| Msa0415520 | AT2G03270.1 | 32.588 | 313 | 185 | 12 | 583 | 887 | 342 | 636 | 8.55e-26 | 114 |
| Msa0415520 | AT1G05460.2 | 34.366 | 355 | 181 | 17 | 581 | 914 | 513 | 836 | 1.08e-25 | 114 |
| Msa0415520 | AT1G05460.1 | 34.270 | 356 | 182 | 17 | 580 | 914 | 512 | 836 | 1.94e-25 | 114 |
| Msa0415520 | AT5G35970.1 | 32.209 | 326 | 179 | 12 | 558 | 862 | 615 | 919 | 3.37e-25 | 113 |
| Msa0415520 | AT1G08840.3 | 31.636 | 275 | 146 | 9 | 609 | 864 | 1053 | 1304 | 1.53e-22 | 105 |
| Msa0415520 | AT1G08840.4 | 31.636 | 275 | 146 | 9 | 609 | 864 | 1050 | 1301 | 1.56e-22 | 105 |
| Msa0415520 | AT1G08840.1 | 31.636 | 275 | 146 | 9 | 609 | 864 | 1018 | 1269 | 1.77e-22 | 104 |
| Msa0415520 | AT1G08840.2 | 31.636 | 275 | 146 | 9 | 609 | 864 | 1037 | 1288 | 1.86e-22 | 104 |
Find 171 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGACACTATTAAACTTATT+TGG | 0.047323 | 3_2:-61723674 | Msa0415520:CDS |
| TATCACATTGCTTATGTTTA+TGG | 0.056422 | 3_2:-61724425 | Msa0415520:CDS |
| GACTGTCAACTTTGTATTTC+TGG | 0.059932 | 3_2:-61723813 | Msa0415520:CDS |
| TCCTCGTAGAATTCTTTATT+TGG | 0.128508 | 3_2:+61722352 | None:intergenic |
| CTTGGATGATATGAAGCTTT+TGG | 0.223969 | 3_2:+61724592 | None:intergenic |
| CCTTGTCCCTGCAGAAGTTT+TGG | 0.249976 | 3_2:+61725202 | None:intergenic |
| TGACACTATTAAACTTATTT+GGG | 0.250229 | 3_2:-61723673 | Msa0415520:CDS |
| AGACATTGCCTTTGGATATT+AGG | 0.254480 | 3_2:-61721675 | Msa0415520:CDS |
| TATAAGCTTGATGCAGAAAA+TGG | 0.260363 | 3_2:-61723288 | Msa0415520:CDS |
| CTTAAGGCTTTCAATGATCT+TGG | 0.266754 | 3_2:+61722168 | None:intergenic |
| GTTAGTGTTCGTTCTGTTGA+TGG | 0.273050 | 3_2:-61721898 | Msa0415520:CDS |
| ACCCTTAGCTATGTTTATAA+AGG | 0.275468 | 3_2:+61722249 | None:intergenic |
| GGATCTTGATCTTGCAAGTT+TGG | 0.277386 | 3_2:-61725265 | Msa0415520:CDS |
| TCTTGTCCTCATCGGCATTA+TGG | 0.285418 | 3_2:+61721577 | None:intergenic |
| CGTTCTGTTGATGGCTTTCA+AGG | 0.306759 | 3_2:-61721889 | Msa0415520:CDS |
| CTACCATATGCTTGCTTACC+TGG | 0.309271 | 3_2:+61721440 | None:intergenic |
| ACCTTCCAATTCTGAGTTCA+AGG | 0.330505 | 3_2:+61724253 | None:intergenic |
| CACATTTGCTCGTTGTCTAT+TGG | 0.334197 | 3_2:+61721798 | None:intergenic |
| TGGAGCACATGCTAATGTTC+TGG | 0.339904 | 3_2:+61723584 | None:intergenic |
| CCTCGTAGAATTCTTTATTT+GGG | 0.341457 | 3_2:+61722353 | None:intergenic |
| GCAATGTGATAATATCTTCT+TGG | 0.341597 | 3_2:+61724437 | None:intergenic |
| CTCAACCAATGAAGGAATAA+AGG | 0.344197 | 3_2:+61724700 | None:intergenic |
| AAACTCCTTTATTCCTTCAT+TGG | 0.344487 | 3_2:-61724705 | Msa0415520:CDS |
| TCTCCAACCTCTGGCTGATA+TGG | 0.345235 | 3_2:+61724512 | None:intergenic |
| TCGTACACCTGAGCATTATA+CGG | 0.353665 | 3_2:+61721973 | None:intergenic |
| TTACAACAAATATTCGCATT+TGG | 0.356369 | 3_2:-61724280 | Msa0415520:CDS |
| GTTACTGAAGAGGCTGGATA+TGG | 0.357414 | 3_2:-61722466 | Msa0415520:CDS |
| TAGCTCATTTCTCTGACAAT+TGG | 0.367715 | 3_2:+61722313 | None:intergenic |
| GAAAGCCTTGAACTCAGAAT+TGG | 0.368215 | 3_2:-61724258 | Msa0415520:CDS |
| CAAGATCATTGAAAGCCTTA+AGG | 0.368850 | 3_2:-61722167 | Msa0415520:CDS |
| AAGAAGTTTGTTTGAGAGGC+TGG | 0.372062 | 3_2:-61722443 | Msa0415520:CDS |
| CTTCAGAACAAGCAGCAATA+TGG | 0.372898 | 3_2:+61723784 | None:intergenic |
| ACAAATTGCGCTAACGTCAT+AGG | 0.376474 | 3_2:+61723174 | None:intergenic |
| AACATCTTTATTTCCATTTG+AGG | 0.384450 | 3_2:-61723016 | Msa0415520:CDS |
| TCAGAGAAATGAGCTATAAT+AGG | 0.384938 | 3_2:-61722306 | Msa0415520:CDS |
| GAGGACCCCTCAAAACAATA+TGG | 0.386964 | 3_2:-61723315 | Msa0415520:CDS |
| ATTCGTGCAGACATTGCCTT+TGG | 0.389303 | 3_2:-61721683 | Msa0415520:intron |
| AAAGATGAACATGATTAAAA+AGG | 0.391359 | 3_2:-61724228 | Msa0415520:CDS |
| TATAATAGGTGTTTCCTTGA+AGG | 0.391736 | 3_2:-61722292 | Msa0415520:CDS |
| ACTGTCAACTTTGTATTTCT+GGG | 0.392878 | 3_2:-61723812 | Msa0415520:CDS |
| TTTGGTGACATAGTGATATT+CGG | 0.397749 | 3_2:-61723477 | Msa0415520:CDS |
| GTTTGAGAGGCTGGTATTGT+TGG | 0.397795 | 3_2:-61722434 | Msa0415520:CDS |
| CAAGCTTGTATGGCGTGAAC+CGG | 0.399208 | 3_2:-61724655 | Msa0415520:CDS |
| TCCAACACTGCAGTATTAGT+TGG | 0.399230 | 3_2:+61723564 | None:intergenic |
| GTTAGCAAATCAAGAGCTAT+AGG | 0.399911 | 3_2:+61722979 | None:intergenic |
| TAACACAAAACTTGCTCATC+AGG | 0.408513 | 3_2:+61725461 | None:intergenic |
| TTTCATCTTCCTCATATGAA+TGG | 0.412899 | 3_2:+61723139 | None:intergenic |
| AGAGACACTTGCCTTCCTTA+AGG | 0.415257 | 3_2:+61722152 | None:intergenic |
| TTGATGCAGTACAGAAAATC+AGG | 0.416104 | 3_2:+61722749 | None:intergenic |
| GAAAGCATTCTTGACTGTCT+TGG | 0.416880 | 3_2:-61722892 | Msa0415520:CDS |
| GCTGTCAATATCTCACAAAA+AGG | 0.417796 | 3_2:+61724629 | None:intergenic |
| CTTCACCATGCTGTCCTCAT+AGG | 0.419533 | 3_2:-61722616 | Msa0415520:CDS |
| CGAACACTAACAGAGAAGTT+TGG | 0.419784 | 3_2:+61721910 | None:intergenic |
| AAACTCCGTGTCAATGCGTT+TGG | 0.424142 | 3_2:+61724364 | None:intergenic |
| CTTTATTCCTTCATTGGTTG+AGG | 0.426448 | 3_2:-61724699 | Msa0415520:CDS |
| TTTGAGAGGCTGGTATTGTT+GGG | 0.436525 | 3_2:-61722433 | Msa0415520:CDS |
| GATGTTGATACATATGGCTT+TGG | 0.439847 | 3_2:-61723495 | Msa0415520:CDS |
| CGGACACAGTTCGAAGAATA+TGG | 0.447007 | 3_2:-61722209 | Msa0415520:CDS |
| TGTAGACTAAGTTTCTTGAA+TGG | 0.453167 | 3_2:+61721492 | None:intergenic |
| TGCCGATGAGGACAAGAAAC+TGG | 0.454201 | 3_2:-61721571 | Msa0415520:CDS |
| ACATAGTGATATTCGGCAAC+AGG | 0.457654 | 3_2:-61723470 | Msa0415520:CDS |
| AAACTGTCGAAGACTTAAAC+AGG | 0.464236 | 3_2:-61724460 | Msa0415520:CDS |
| TTCCTTTATAAACATAGCTA+AGG | 0.464927 | 3_2:-61722251 | Msa0415520:CDS |
| GATCTGTCTTCAAGCTTGTA+TGG | 0.469485 | 3_2:-61724665 | Msa0415520:CDS |
| ATGGAAGAAGTTTGTTTGAG+AGG | 0.470944 | 3_2:-61722447 | Msa0415520:CDS |
| TTCGCAACCAAAACTTCTGC+AGG | 0.472089 | 3_2:-61725209 | Msa0415520:CDS |
| GAGCATGATGTTGATACATA+TGG | 0.472647 | 3_2:-61723501 | Msa0415520:CDS |
| TGTTGGTAGGTGTGTATACA+AGG | 0.473971 | 3_2:+61723035 | None:intergenic |
| CTAAAGGTTACTGAAGAGGC+TGG | 0.474648 | 3_2:-61722472 | Msa0415520:intron |
| TGCATTCTCATTAGATCTCA+CGG | 0.476860 | 3_2:+61721837 | None:intergenic |
| GTTAGCGCAATTTGTGAAGA+AGG | 0.482966 | 3_2:-61723166 | Msa0415520:CDS |
| AAACTTATTTGGGGCCCACC+AGG | 0.483167 | 3_2:-61723663 | Msa0415520:CDS |
| GATTTGATAAAGCAGGAACT+TGG | 0.484795 | 3_2:+61724574 | None:intergenic |
| AAACAAACTCTCGACGATCA+TGG | 0.485641 | 3_2:-61722922 | Msa0415520:CDS |
| GATAATCAAGAAAGATATCC+TGG | 0.487670 | 3_2:+61723415 | None:intergenic |
| GAAACTGGCTGAGGCTATTG+AGG | 0.488846 | 3_2:-61721556 | Msa0415520:CDS |
| TTTATTTGGGAATAAGCTGA+TGG | 0.489788 | 3_2:+61722366 | None:intergenic |
| CCTCCAGGTAAGCAAGCATA+TGG | 0.490045 | 3_2:-61721443 | Msa0415520:exon |
| TGAAGACCTGGCAGCTGTAA+TGG | 0.493054 | 3_2:+61722634 | None:intergenic |
| ATTTGGGGCCCACCAGGGAC+TGG | 0.496949 | 3_2:-61723657 | Msa0415520:CDS |
| ATGTGGCACTGACTCGGGCT+AGG | 0.498446 | 3_2:-61721780 | Msa0415520:intron |
| GTTACTGTTATGAATGTATG+TGG | 0.500171 | 3_2:+61724737 | None:intergenic |
| TGTGGATTAACCAAAACAAA+AGG | 0.503111 | 3_2:+61725392 | None:intergenic |
| AGCCAGTTTCTTGTCCTCAT+CGG | 0.503543 | 3_2:+61721569 | None:intergenic |
| ATTCATTCAGATTCTCAGAC+TGG | 0.504869 | 3_2:+61723748 | None:intergenic |
| TCTTGATCTTGCAAGTTTGG+TGG | 0.508242 | 3_2:-61725262 | Msa0415520:CDS |
| GCAATGAGATCTCCAACCTC+TGG | 0.511081 | 3_2:+61724503 | None:intergenic |
| GCCATTCCATTACAGCTGCC+AGG | 0.511787 | 3_2:-61722640 | Msa0415520:CDS |
| GAAAGATATCCTGGAGGCAT+CGG | 0.513481 | 3_2:+61723424 | None:intergenic |
| AGCAAATGTGGCACTGACTC+GGG | 0.513680 | 3_2:-61721785 | Msa0415520:CDS |
| CATATCTCCGTATAATGCTC+AGG | 0.515178 | 3_2:-61721980 | Msa0415520:CDS |
| TGAGTTTCCTCAACCAATGA+AGG | 0.515450 | 3_2:+61724692 | None:intergenic |
| AGATAGACAGCATAAAGCTC+TGG | 0.517857 | 3_2:+61724311 | None:intergenic |
| GAGCAAATGTGGCACTGACT+CGG | 0.518069 | 3_2:-61721786 | Msa0415520:CDS |
| GTACTTGACGCAAAGGAAAG+AGG | 0.527029 | 3_2:-61721606 | Msa0415520:CDS |
| TCAAATGGAAATAAAGATGT+TGG | 0.529296 | 3_2:+61723018 | None:intergenic |
| TTTGGGAATAAGCTGATGGA+TGG | 0.530533 | 3_2:+61722370 | None:intergenic |
| TAATGTTTCCATCCAGTGGT+TGG | 0.531073 | 3_2:+61723363 | None:intergenic |
| GGTAAAGAACAACGAGGTCG+CGG | 0.536260 | 3_2:-61722229 | Msa0415520:CDS |
| GTCGAGAGTTTGTTTCAACT+TGG | 0.537065 | 3_2:+61722930 | None:intergenic |
| TCTAATGAGAATGCAAAAGT+AGG | 0.540283 | 3_2:-61721829 | Msa0415520:CDS |
| CAACAGGTCTCGAATGAAAG+TGG | 0.540744 | 3_2:-61723454 | Msa0415520:CDS |
| AAGCTTGTATGGCGTGAACC+GGG | 0.542583 | 3_2:-61724654 | Msa0415520:CDS |
| GTTCCTGCTTTATCAAATCT+CGG | 0.542665 | 3_2:-61724570 | Msa0415520:CDS |
| AAGAATGATACAAAAGATGT+AGG | 0.542999 | 3_2:-61724536 | Msa0415520:CDS |
| ATCAATGATTACATTGCTTG+AGG | 0.544803 | 3_2:-61723334 | Msa0415520:CDS |
| GGACAGTTACCGATGCCTCC+AGG | 0.545568 | 3_2:-61723433 | Msa0415520:CDS |
| AACTTATTTGGGGCCCACCA+GGG | 0.546902 | 3_2:-61723662 | Msa0415520:CDS |
| GAAGGAATACCATTCATATG+AGG | 0.547439 | 3_2:-61723148 | Msa0415520:CDS |
| TAAGTAATGTTTCCATCCAG+TGG | 0.547807 | 3_2:+61723359 | None:intergenic |
| GGACCATATCAGCCAGAGGT+TGG | 0.550720 | 3_2:-61724515 | Msa0415520:CDS |
| AGTTTAACTCTAATTACTTG+AGG | 0.551377 | 3_2:-61724346 | Msa0415520:CDS |
| TCCTAGTGTGTACATTATAA+CGG | 0.551491 | 3_2:-61721318 | Msa0415520:three_prime_UTR |
| ACATAATTTCAGCTCCGCTA+CGG | 0.551605 | 3_2:+61723065 | None:intergenic |
| ATCTTCTTAATACTCAGTAT+AGG | 0.554124 | 3_2:-61722399 | Msa0415520:CDS |
| GAAGTGATCTTAGTAAGCAA+AGG | 0.554639 | 3_2:+61722842 | None:intergenic |
| CAGATTCTCAGACTGGATCA+TGG | 0.555889 | 3_2:+61723755 | None:intergenic |
| TTTCATTTCCTAATATCCAA+AGG | 0.561731 | 3_2:+61721667 | None:intergenic |
| CCAAAACTTCTGCAGGGACA+AGG | 0.561795 | 3_2:-61725202 | Msa0415520:intron |
| CTGTCAACTTTGTATTTCTG+GGG | 0.562848 | 3_2:-61723811 | Msa0415520:CDS |
| TTTAAGCTGTGTTTCCATGA+GGG | 0.566522 | 3_2:-61723709 | Msa0415520:CDS |
| TCACCGAGATTTGATAAAGC+AGG | 0.567190 | 3_2:+61724567 | None:intergenic |
| GCATTCTTGACTGTCTTGGA+AGG | 0.567215 | 3_2:-61722888 | Msa0415520:CDS |
| GTCTTCCAAACGCATTGACA+CGG | 0.567312 | 3_2:-61724369 | Msa0415520:CDS |
| ATGGAAATAAAGATGTTGGT+AGG | 0.567708 | 3_2:+61723022 | None:intergenic |
| AGACATTTGCAACAACCTCC+AGG | 0.569976 | 3_2:-61721458 | Msa0415520:CDS |
| AAATCTAAAGGTTACTGAAG+AGG | 0.570097 | 3_2:-61722476 | Msa0415520:intron |
| TCCAACTAATACTGCAGTGT+TGG | 0.576731 | 3_2:-61723565 | Msa0415520:CDS |
| TCCTTTATAAACATAGCTAA+GGG | 0.577485 | 3_2:-61722250 | Msa0415520:CDS |
| TAATACTGCAGTGTTGGAAG+TGG | 0.577647 | 3_2:-61723559 | Msa0415520:CDS |
| ACAAGGAAGAAAGTTAGCAT+AGG | 0.580771 | 3_2:-61722006 | Msa0415520:CDS |
| TTTCAACTTGGCTTTACACA+TGG | 0.583103 | 3_2:+61722942 | None:intergenic |
| GACACTATTAAACTTATTTG+GGG | 0.583248 | 3_2:-61723672 | Msa0415520:CDS |
| GGATCAGAAATAGAATCGCT+CGG | 0.584635 | 3_2:+61721931 | None:intergenic |
| TACTTGACGCAAAGGAAAGA+GGG | 0.587734 | 3_2:-61721605 | Msa0415520:CDS |
| CTTGAGCAGGGAAAATAACA+AGG | 0.588111 | 3_2:+61723614 | None:intergenic |
| ATCATTGAAAGCCTTAAGGA+AGG | 0.592650 | 3_2:-61722163 | Msa0415520:CDS |
| ATTATAAATTCGTATACTAG+AGG | 0.593117 | 3_2:-61721275 | Msa0415520:three_prime_UTR |
| AGAACTAGTACTTGACGCAA+AGG | 0.595711 | 3_2:-61721613 | Msa0415520:CDS |
| ACCTGGCAGCTGTAATGGAA+TGG | 0.596226 | 3_2:+61722639 | None:intergenic |
| ACTATGATGACATTCCCTCA+TGG | 0.597088 | 3_2:+61723695 | None:intergenic |
| CAGTTCGAAGAATATGGTCG+AGG | 0.600198 | 3_2:-61722203 | Msa0415520:CDS |
| TCCTGCAGTGGTCAAAAGCA+CGG | 0.600535 | 3_2:-61722578 | Msa0415520:intron |
| AGGACAGCATGGTGAAGACC+TGG | 0.603597 | 3_2:+61722622 | None:intergenic |
| AAGGAATTCAATCTCAAGCA+AGG | 0.610079 | 3_2:+61721530 | None:intergenic |
| CAATAGACAACGAGCAAATG+TGG | 0.611367 | 3_2:-61721797 | Msa0415520:CDS |
| TATGGATCAAAAGAAAGTAG+TGG | 0.617134 | 3_2:-61724407 | Msa0415520:CDS |
| TGAGGACAAGAAACTGGCTG+AGG | 0.618521 | 3_2:-61721565 | Msa0415520:CDS |
| TTACTGTTATGAATGTATGT+GGG | 0.625285 | 3_2:+61724738 | None:intergenic |
| TAATTTCAGCTCCGCTACGG+TGG | 0.633548 | 3_2:+61723068 | None:intergenic |
| CCATATGCTTGCTTACCTGG+AGG | 0.636482 | 3_2:+61721443 | None:intergenic |
| ATGGTGATTCAGATTCGTCA+AGG | 0.637086 | 3_2:+61721511 | None:intergenic |
| TCTGTTGATGGCTTTCAAGG+CGG | 0.640258 | 3_2:-61721886 | Msa0415520:CDS |
| ACTCTCGACGATCATGGAGA+CGG | 0.645061 | 3_2:-61722916 | Msa0415520:CDS |
| CTATGAAACAAACTATACAA+TGG | 0.647003 | 3_2:-61725488 | Msa0415520:five_prime_UTR |
| GTTGTCTCTCATCACCTATG+AGG | 0.647732 | 3_2:+61722602 | None:intergenic |
| CATCACCTATGAGGACAGCA+TGG | 0.649224 | 3_2:+61722611 | None:intergenic |
| TGAGAGACAACTTCCTGCAG+TGG | 0.650250 | 3_2:-61722590 | Msa0415520:CDS |
| TGGAAGGTTAAACAACACAA+TGG | 0.668521 | 3_2:-61722872 | Msa0415520:CDS |
| GTGTTTCCATAATGCCGATG+AGG | 0.669535 | 3_2:-61721583 | Msa0415520:CDS |
| GCCGTTATAATGTACACACT+AGG | 0.677496 | 3_2:+61721317 | None:intergenic |
| TGTCATTAGAACAATTTACA+CGG | 0.679928 | 3_2:-61723260 | Msa0415520:CDS |
| GAGATTCAGTTCCACCGTAG+CGG | 0.687642 | 3_2:-61723079 | Msa0415520:CDS |
| TCGCAACCAAAACTTCTGCA+GGG | 0.690456 | 3_2:-61725208 | Msa0415520:CDS |
| GCCTTGAACTCAGAATTGGA+AGG | 0.690714 | 3_2:-61724254 | Msa0415520:CDS |
| GACTGGCAAAACAAAGACAG+TGG | 0.695753 | 3_2:-61723640 | Msa0415520:CDS |
| CCCAAATAAAGAATTCTACG+AGG | 0.713544 | 3_2:-61722353 | Msa0415520:CDS |
| TGTAGGACCATATCAGCCAG+AGG | 0.714082 | 3_2:-61724519 | Msa0415520:CDS |
| AATCAAGAAAGATATCCTGG+AGG | 0.754236 | 3_2:+61723418 | None:intergenic |
| GCTAAGGGTAAAGAACAACG+AGG | 0.845741 | 3_2:-61722235 | Msa0415520:CDS |
| ATTCTCATTAGATCTCACGG+TGG | 0.856552 | 3_2:+61721840 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATGAAAAATTTAATAT+TGG | + | chr3_2:61722675-61722694 | None:intergenic | 10.0% |
| !! | ACTTTATGTAAGAAAAAATT+CGG | - | chr3_2:61721662-61721681 | Msa0415520:CDS | 15.0% |
| !!! | TCAATAACTAGAAATTTTAT+CGG | + | chr3_2:61724081-61724100 | None:intergenic | 15.0% |
| !! | AAGAAAATATTCTTAAATGA+TGG | + | chr3_2:61724259-61724278 | None:intergenic | 15.0% |
| !! | ATTATAACTATCAAATCTAA+AGG | - | chr3_2:61724284-61724303 | Msa0415520:CDS | 15.0% |
| !!! | ACATTGTTGATAAAAAAAAG+TGG | - | chr3_2:61721431-61721450 | Msa0415520:three_prime_UTR | 20.0% |
| !! | ATAAAGAGAATACATGAATT+TGG | + | chr3_2:61721689-61721708 | None:intergenic | 20.0% |
| !! | AGTACATTAAATTTATGATG+CGG | + | chr3_2:61721770-61721789 | None:intergenic | 20.0% |
| !! | CATCATAAATTTAATGTACT+TGG | - | chr3_2:61721770-61721789 | Msa0415520:intron | 20.0% |
| !! | AACATTATTGTTTATATCTC+AGG | - | chr3_2:61722001-61722020 | Msa0415520:CDS | 20.0% |
| !! | AAAGATGAACATGATTAAAA+AGG | - | chr3_2:61722544-61722563 | Msa0415520:intron | 20.0% |
| !! | TGACACTATTAAACTTATTT+GGG | - | chr3_2:61723099-61723118 | Msa0415520:CDS | 20.0% |
| !!! | TTTTTGTTACAGAATTTTGT+AGG | - | chr3_2:61724743-61724762 | Msa0415520:CDS | 20.0% |
| !! | TAGAAAAAAGTGATTCTATA+TGG | - | chr3_2:61725134-61725153 | Msa0415520:intron | 20.0% |
| !! | ATTATAAATTCGTATACTAG+AGG | - | chr3_2:61725497-61725516 | Msa0415520:five_prime_UTR | 20.0% |
| ! | CTATGAAACAAACTATACAA+TGG | - | chr3_2:61721284-61721303 | Msa0415520:three_prime_UTR | 25.0% |
| ! | AAAAAAAAGTGGTCATAGAA+AGG | - | chr3_2:61721442-61721461 | Msa0415520:exon | 25.0% |
| !! | AGGTTTTTCTTTCTTTTTTC+AGG | - | chr3_2:61721590-61721609 | Msa0415520:CDS | 25.0% |
| !!! | CTATAGAAGCATATTTGTTT+TGG | + | chr3_2:61721744-61721763 | None:intergenic | 25.0% |
| !! | AACTACAAGAATTTTACTAG+AGG | + | chr3_2:61721823-61721842 | None:intergenic | 25.0% |
| ! | ATTATTGTTTATATCTCAGG+TGG | - | chr3_2:61722004-61722023 | Msa0415520:CDS | 25.0% |
| ! | TTACTGTTATGAATGTATGT+GGG | + | chr3_2:61722037-61722056 | None:intergenic | 25.0% |
| ! | AAGAATGATACAAAAGATGT+AGG | - | chr3_2:61722236-61722255 | Msa0415520:CDS | 25.0% |
| ! | TATCACATTGCTTATGTTTA+TGG | - | chr3_2:61722347-61722366 | Msa0415520:CDS | 25.0% |
| ! | AGTTTAACTCTAATTACTTG+AGG | - | chr3_2:61722426-61722445 | Msa0415520:CDS | 25.0% |
| ! | TTACAACAAATATTCGCATT+TGG | - | chr3_2:61722492-61722511 | Msa0415520:intron | 25.0% |
| !! | TATTTCTAACAACACTCATT+AGG | + | chr3_2:61722607-61722626 | None:intergenic | 25.0% |
| !!! | ATTTTAATCCAGCTTTTCAA+GGG | + | chr3_2:61722829-61722848 | None:intergenic | 25.0% |
| !!! | AATTTTAATCCAGCTTTTCA+AGG | + | chr3_2:61722830-61722849 | None:intergenic | 25.0% |
| !! | TTACTTTGTATTTTGCAGAA+CGG | - | chr3_2:61722932-61722951 | Msa0415520:CDS | 25.0% |
| ! | GTGACACTATTAAACTTATT+TGG | - | chr3_2:61723098-61723117 | Msa0415520:CDS | 25.0% |
| ! | GACACTATTAAACTTATTTG+GGG | - | chr3_2:61723100-61723119 | Msa0415520:CDS | 25.0% |
| !!! | TACAAACCATATTGTTTTGA+GGG | + | chr3_2:61723466-61723485 | None:intergenic | 25.0% |
| !!! | ATACAAACCATATTGTTTTG+AGG | + | chr3_2:61723467-61723486 | None:intergenic | 25.0% |
| ! | TGTCATTAGAACAATTTACA+CGG | - | chr3_2:61723512-61723531 | Msa0415520:CDS | 25.0% |
| ! | TCAAATGGAAATAAAGATGT+TGG | + | chr3_2:61723757-61723776 | None:intergenic | 25.0% |
| !! | AACATCTTTATTTCCATTTG+AGG | - | chr3_2:61723756-61723775 | Msa0415520:CDS | 25.0% |
| !!! | CCATATTTTTCAGTTATGTT+TGG | + | chr3_2:61723973-61723992 | None:intergenic | 25.0% |
| ! | CCAAACATAACTGAAAAATA+TGG | - | chr3_2:61723970-61723989 | Msa0415520:intron | 25.0% |
| ! | ATCTTCTTAATACTCAGTAT+AGG | - | chr3_2:61724373-61724392 | Msa0415520:CDS | 25.0% |
| ! | TTCCTTTATAAACATAGCTA+AGG | - | chr3_2:61724521-61724540 | Msa0415520:CDS | 25.0% |
| ! | TCCTTTATAAACATAGCTAA+GGG | - | chr3_2:61724522-61724541 | Msa0415520:CDS | 25.0% |
| !! | AATAAGAAAGCTTCTTCTTT+TGG | - | chr3_2:61724706-61724725 | Msa0415520:CDS | 25.0% |
| ! | TTTCATTTCCTAATATCCAA+AGG | + | chr3_2:61725108-61725127 | None:intergenic | 25.0% |
| !! | ATATGTCTGTCCTTTTGTTT+TGG | - | chr3_2:61721370-61721389 | Msa0415520:three_prime_UTR | 30.0% |
| ! | TGTGGATTAACCAAAACAAA+AGG | + | chr3_2:61721383-61721402 | None:intergenic | 30.0% |
| ! | CTTCTTTTTATACATGTGTG+TGG | + | chr3_2:61721401-61721420 | None:intergenic | 30.0% |
| !! | GAGTTTTAATGTTAAGAGAG+AGG | - | chr3_2:61721483-61721502 | Msa0415520:CDS | 30.0% |
| ! | TTTTAATGTTAAGAGAGAGG+AGG | - | chr3_2:61721486-61721505 | Msa0415520:CDS | 30.0% |
| ! | TGGTGGAAATTGTATTTTCT+TGG | - | chr3_2:61721527-61721546 | Msa0415520:CDS | 30.0% |
| ! | ATTTTACTAGAGGAGATTGA+GGG | + | chr3_2:61721813-61721832 | None:intergenic | 30.0% |
| ! | AATTTTACTAGAGGAGATTG+AGG | + | chr3_2:61721814-61721833 | None:intergenic | 30.0% |
| TAGCATTAAATCAATCCAGA+CGG | - | chr3_2:61721875-61721894 | Msa0415520:CDS | 30.0% | |
| ! | TTTGATAAAGTGTCTTCAGA+GGG | + | chr3_2:61721968-61721987 | None:intergenic | 30.0% |
| !! | TTTTGATAAAGTGTCTTCAG+AGG | + | chr3_2:61721969-61721988 | None:intergenic | 30.0% |
| GTTACTGTTATGAATGTATG+TGG | + | chr3_2:61722038-61722057 | None:intergenic | 30.0% | |
| AAACTCCTTTATTCCTTCAT+TGG | - | chr3_2:61722067-61722086 | Msa0415520:intron | 30.0% | |
| ! | TTTAAGTCTTCGACAGTTTT+CGG | + | chr3_2:61722311-61722330 | None:intergenic | 30.0% |
| GCAATGTGATAATATCTTCT+TGG | + | chr3_2:61722338-61722357 | None:intergenic | 30.0% | |
| TATGGATCAAAAGAAAGTAG+TGG | - | chr3_2:61722365-61722384 | Msa0415520:CDS | 30.0% | |
| GTGTAAAGGATCATATGATA+TGG | + | chr3_2:61722738-61722757 | None:intergenic | 30.0% | |
| ATCTGAATTTATAGCTGCAA+AGG | - | chr3_2:61722874-61722893 | Msa0415520:CDS | 30.0% | |
| ACTGTCAACTTTGTATTTCT+GGG | - | chr3_2:61722960-61722979 | Msa0415520:CDS | 30.0% | |
| ! | GCTTAAAACTGCATCTTTTT+GGG | + | chr3_2:61723050-61723069 | None:intergenic | 30.0% |
| ! | AGCTTAAAACTGCATCTTTT+TGG | + | chr3_2:61723051-61723070 | None:intergenic | 30.0% |
| ! | TTTGGTGACATAGTGATATT+CGG | - | chr3_2:61723295-61723314 | Msa0415520:CDS | 30.0% |
| GATAATCAAGAAAGATATCC+TGG | + | chr3_2:61723360-61723379 | None:intergenic | 30.0% | |
| ATCAATGATTACATTGCTTG+AGG | - | chr3_2:61723438-61723457 | Msa0415520:CDS | 30.0% | |
| !!! | ACAAACCATATTGTTTTGAG+GGG | + | chr3_2:61723465-61723484 | None:intergenic | 30.0% |
| TATAAGCTTGATGCAGAAAA+TGG | - | chr3_2:61723484-61723503 | Msa0415520:CDS | 30.0% | |
| TTTCATCTTCCTCATATGAA+TGG | + | chr3_2:61723636-61723655 | None:intergenic | 30.0% | |
| ATGGAAATAAAGATGTTGGT+AGG | + | chr3_2:61723753-61723772 | None:intergenic | 30.0% | |
| ! | ATTTTCTTCATCTCCTCAAA+TGG | + | chr3_2:61723772-61723791 | None:intergenic | 30.0% |
| ATCCAAATCGCAAAAAATGA+CGG | + | chr3_2:61724231-61724250 | None:intergenic | 30.0% | |
| AAATCTAAAGGTTACTGAAG+AGG | - | chr3_2:61724296-61724315 | Msa0415520:CDS | 30.0% | |
| TTTATTTGGGAATAAGCTGA+TGG | + | chr3_2:61724409-61724428 | None:intergenic | 30.0% | |
| ! | CCTCGTAGAATTCTTTATTT+GGG | + | chr3_2:61724422-61724441 | None:intergenic | 30.0% |
| TCCTCGTAGAATTCTTTATT+TGG | + | chr3_2:61724423-61724442 | None:intergenic | 30.0% | |
| TCAGAGAAATGAGCTATAAT+AGG | - | chr3_2:61724466-61724485 | Msa0415520:CDS | 30.0% | |
| TATAATAGGTGTTTCCTTGA+AGG | - | chr3_2:61724480-61724499 | Msa0415520:CDS | 30.0% | |
| ! | AAGCATACATTTTTCCTTCA+AGG | + | chr3_2:61724497-61724516 | None:intergenic | 30.0% |
| ACCCTTAGCTATGTTTATAA+AGG | + | chr3_2:61724526-61724545 | None:intergenic | 30.0% | |
| TGTCTATGTATATGTGTTAG+TGG | - | chr3_2:61724659-61724678 | Msa0415520:CDS | 30.0% | |
| ! | TTACAGAATTTTGTAGGACA+AGG | - | chr3_2:61724749-61724768 | Msa0415520:CDS | 30.0% |
| TCTAATGAGAATGCAAAAGT+AGG | - | chr3_2:61724943-61724962 | Msa0415520:intron | 30.0% | |
| ACATAAGCTCATAGTAAAGT+TGG | - | chr3_2:61725064-61725083 | Msa0415520:intron | 30.0% | |
| TGTAGACTAAGTTTCTTGAA+TGG | + | chr3_2:61725283-61725302 | None:intergenic | 30.0% | |
| TCCTAGTGTGTACATTATAA+CGG | - | chr3_2:61725454-61725473 | Msa0415520:five_prime_UTR | 30.0% | |
| ! | TAACACAAAACTTGCTCATC+AGG | + | chr3_2:61721314-61721333 | None:intergenic | 35.0% |
| CTCAACCAATGAAGGAATAA+AGG | + | chr3_2:61722075-61722094 | None:intergenic | 35.0% | |
| ! | CTTTATTCCTTCATTGGTTG+AGG | - | chr3_2:61722073-61722092 | Msa0415520:intron | 35.0% |
| GCTGTCAATATCTCACAAAA+AGG | + | chr3_2:61722146-61722165 | None:intergenic | 35.0% | |
| ! | CTTGGATGATATGAAGCTTT+TGG | + | chr3_2:61722183-61722202 | None:intergenic | 35.0% |
| GATTTGATAAAGCAGGAACT+TGG | + | chr3_2:61722201-61722220 | None:intergenic | 35.0% | |
| GTTCCTGCTTTATCAAATCT+CGG | - | chr3_2:61722202-61722221 | Msa0415520:CDS | 35.0% | |
| AAACTGTCGAAGACTTAAAC+AGG | - | chr3_2:61722312-61722331 | Msa0415520:CDS | 35.0% | |
| GGATCATATGATATGGTATC+AGG | + | chr3_2:61722731-61722750 | None:intergenic | 35.0% | |
| TAATTGAACCCTTGAAAAGC+TGG | - | chr3_2:61722818-61722837 | Msa0415520:CDS | 35.0% | |
| GACTGTCAACTTTGTATTTC+TGG | - | chr3_2:61722959-61722978 | Msa0415520:CDS | 35.0% | |
| ! | CTGTCAACTTTGTATTTCTG+GGG | - | chr3_2:61722961-61722980 | Msa0415520:CDS | 35.0% |
| ATTCATTCAGATTCTCAGAC+TGG | + | chr3_2:61723027-61723046 | None:intergenic | 35.0% | |
| ! | TTTTAAGCTGTGTTTCCATG+AGG | - | chr3_2:61723062-61723081 | Msa0415520:CDS | 35.0% |
| TTTAAGCTGTGTTTCCATGA+GGG | - | chr3_2:61723063-61723082 | Msa0415520:CDS | 35.0% | |
| !!! | TCTGGTTTTAAACTTGAGCA+GGG | + | chr3_2:61723173-61723192 | None:intergenic | 35.0% |
| !!! | TTCTGGTTTTAAACTTGAGC+AGG | + | chr3_2:61723174-61723193 | None:intergenic | 35.0% |
| GAGCATGATGTTGATACATA+TGG | - | chr3_2:61723271-61723290 | Msa0415520:CDS | 35.0% | |
| GATGTTGATACATATGGCTT+TGG | - | chr3_2:61723277-61723296 | Msa0415520:CDS | 35.0% | |
| AATCAAGAAAGATATCCTGG+AGG | + | chr3_2:61723357-61723376 | None:intergenic | 35.0% | |
| ! | ATCGCGTAAGTAATCTTTTG+AGG | - | chr3_2:61723377-61723396 | Msa0415520:CDS | 35.0% |
| TAAGTAATGTTTCCATCCAG+TGG | + | chr3_2:61723416-61723435 | None:intergenic | 35.0% | |
| GAAGGAATACCATTCATATG+AGG | - | chr3_2:61723624-61723643 | Msa0415520:CDS | 35.0% | |
| GTTAGCAAATCAAGAGCTAT+AGG | + | chr3_2:61723796-61723815 | None:intergenic | 35.0% | |
| !! | TTTCAACTTGGCTTTACACA+TGG | + | chr3_2:61723833-61723852 | None:intergenic | 35.0% |
| TGGAAGGTTAAACAACACAA+TGG | - | chr3_2:61723900-61723919 | Msa0415520:intron | 35.0% | |
| GAAGTGATCTTAGTAAGCAA+AGG | + | chr3_2:61723933-61723952 | None:intergenic | 35.0% | |
| TTGATGCAGTACAGAAAATC+AGG | + | chr3_2:61724026-61724045 | None:intergenic | 35.0% | |
| ! | TCTACTAGACTTTTCACAGA+AGG | - | chr3_2:61724048-61724067 | Msa0415520:intron | 35.0% |
| !!! | TTCCGTCATTTTTTGCGATT+TGG | - | chr3_2:61724226-61724245 | Msa0415520:CDS | 35.0% |
| ! | ATGGAAGAAGTTTGTTTGAG+AGG | - | chr3_2:61724325-61724344 | Msa0415520:CDS | 35.0% |
| CCCAAATAAAGAATTCTACG+AGG | - | chr3_2:61724419-61724438 | Msa0415520:CDS | 35.0% | |
| TAGCTCATTTCTCTGACAAT+TGG | + | chr3_2:61724462-61724481 | None:intergenic | 35.0% | |
| CTTAAGGCTTTCAATGATCT+TGG | + | chr3_2:61724607-61724626 | None:intergenic | 35.0% | |
| CAAGATCATTGAAAGCCTTA+AGG | - | chr3_2:61724605-61724624 | Msa0415520:CDS | 35.0% | |
| ATCATTGAAAGCCTTAAGGA+AGG | - | chr3_2:61724609-61724628 | Msa0415520:CDS | 35.0% | |
| ACAAGGAAGAAAGTTAGCAT+AGG | - | chr3_2:61724766-61724785 | Msa0415520:intron | 35.0% | |
| TGCATTCTCATTAGATCTCA+CGG | + | chr3_2:61724938-61724957 | None:intergenic | 35.0% | |
| TGAGCTTATGTATCAGAACT+TGG | + | chr3_2:61725055-61725074 | None:intergenic | 35.0% | |
| AGACATTGCCTTTGGATATT+AGG | - | chr3_2:61725097-61725116 | Msa0415520:intron | 35.0% | |
| AAGGAATTCAATCTCAAGCA+AGG | + | chr3_2:61725245-61725264 | None:intergenic | 35.0% | |
| GGATCTTGATCTTGCAAGTT+TGG | - | chr3_2:61721507-61721526 | Msa0415520:CDS | 40.0% | |
| TCTTGATCTTGCAAGTTTGG+TGG | - | chr3_2:61721510-61721529 | Msa0415520:CDS | 40.0% | |
| TGAGTTTCCTCAACCAATGA+AGG | + | chr3_2:61722083-61722102 | None:intergenic | 40.0% | |
| GATCTGTCTTCAAGCTTGTA+TGG | - | chr3_2:61722107-61722126 | Msa0415520:intron | 40.0% | |
| ATATCTCACAAAAAGGAGCC+CGG | + | chr3_2:61722139-61722158 | None:intergenic | 40.0% | |
| TCACCGAGATTTGATAAAGC+AGG | + | chr3_2:61722208-61722227 | None:intergenic | 40.0% | |
| AGATAGACAGCATAAAGCTC+TGG | + | chr3_2:61722464-61722483 | None:intergenic | 40.0% | |
| GAAAGCCTTGAACTCAGAAT+TGG | - | chr3_2:61722514-61722533 | Msa0415520:intron | 40.0% | |
| ACCTTCCAATTCTGAGTTCA+AGG | + | chr3_2:61722522-61722541 | None:intergenic | 40.0% | |
| ACTAGAGCTTAGGTGTGTAA+AGG | + | chr3_2:61722752-61722771 | None:intergenic | 40.0% | |
| AAGATTCGTCACTAGAGCTT+AGG | + | chr3_2:61722762-61722781 | None:intergenic | 40.0% | |
| CTTCAGAACAAGCAGCAATA+TGG | + | chr3_2:61722991-61723010 | None:intergenic | 40.0% | |
| ACTATGATGACATTCCCTCA+TGG | + | chr3_2:61723080-61723099 | None:intergenic | 40.0% | |
| CTTGAGCAGGGAAAATAACA+AGG | + | chr3_2:61723161-61723180 | None:intergenic | 40.0% | |
| TCCAACTAATACTGCAGTGT+TGG | - | chr3_2:61723207-61723226 | Msa0415520:CDS | 40.0% | |
| TCCAACACTGCAGTATTAGT+TGG | + | chr3_2:61723211-61723230 | None:intergenic | 40.0% | |
| ! | TAATACTGCAGTGTTGGAAG+TGG | - | chr3_2:61723213-61723232 | Msa0415520:CDS | 40.0% |
| ACATAGTGATATTCGGCAAC+AGG | - | chr3_2:61723302-61723321 | Msa0415520:CDS | 40.0% | |
| TAATGTTTCCATCCAGTGGT+TGG | + | chr3_2:61723412-61723431 | None:intergenic | 40.0% | |
| ACAAATTGCGCTAACGTCAT+AGG | + | chr3_2:61723601-61723620 | None:intergenic | 40.0% | |
| GTTAGCGCAATTTGTGAAGA+AGG | - | chr3_2:61723606-61723625 | Msa0415520:CDS | 40.0% | |
| ACATAATTTCAGCTCCGCTA+CGG | + | chr3_2:61723710-61723729 | None:intergenic | 40.0% | |
| ! | TGTTGGTAGGTGTGTATACA+AGG | + | chr3_2:61723740-61723759 | None:intergenic | 40.0% |
| ! | GTCGAGAGTTTGTTTCAACT+TGG | + | chr3_2:61723845-61723864 | None:intergenic | 40.0% |
| AAACAAACTCTCGACGATCA+TGG | - | chr3_2:61723850-61723869 | Msa0415520:intron | 40.0% | |
| !! | GAAAGCATTCTTGACTGTCT+TGG | - | chr3_2:61723880-61723899 | Msa0415520:intron | 40.0% |
| ! | AAGAAGTTTGTTTGAGAGGC+TGG | - | chr3_2:61724329-61724348 | Msa0415520:CDS | 40.0% |
| TTTGAGAGGCTGGTATTGTT+GGG | - | chr3_2:61724339-61724358 | Msa0415520:CDS | 40.0% | |
| TTTGGGAATAAGCTGATGGA+TGG | + | chr3_2:61724405-61724424 | None:intergenic | 40.0% | |
| CATATCTCCGTATAATGCTC+AGG | - | chr3_2:61724792-61724811 | Msa0415520:intron | 40.0% | |
| TCGTACACCTGAGCATTATA+CGG | + | chr3_2:61724802-61724821 | None:intergenic | 40.0% | |
| !!! | CGCTCGGCTTTATTTTTTCT+TGG | + | chr3_2:61724828-61724847 | None:intergenic | 40.0% |
| GGATCAGAAATAGAATCGCT+CGG | + | chr3_2:61724844-61724863 | None:intergenic | 40.0% | |
| CGAACACTAACAGAGAAGTT+TGG | + | chr3_2:61724865-61724884 | None:intergenic | 40.0% | |
| GTTAGTGTTCGTTCTGTTGA+TGG | - | chr3_2:61724874-61724893 | Msa0415520:intron | 40.0% | |
| ATTCTCATTAGATCTCACGG+TGG | + | chr3_2:61724935-61724954 | None:intergenic | 40.0% | |
| CACATTTGCTCGTTGTCTAT+TGG | + | chr3_2:61724977-61724996 | None:intergenic | 40.0% | |
| CAATAGACAACGAGCAAATG+TGG | - | chr3_2:61724975-61724994 | Msa0415520:intron | 40.0% | |
| AGAACTAGTACTTGACGCAA+AGG | - | chr3_2:61725159-61725178 | Msa0415520:intron | 40.0% | |
| TACTTGACGCAAAGGAAAGA+GGG | - | chr3_2:61725167-61725186 | Msa0415520:intron | 40.0% | |
| ATGGTGATTCAGATTCGTCA+AGG | + | chr3_2:61725264-61725283 | None:intergenic | 40.0% | |
| GCCGTTATAATGTACACACT+AGG | + | chr3_2:61725458-61725477 | None:intergenic | 40.0% | |
| TTCGCAACCAAAACTTCTGC+AGG | - | chr3_2:61721563-61721582 | Msa0415520:CDS | 45.0% | |
| TCGCAACCAAAACTTCTGCA+GGG | - | chr3_2:61721564-61721583 | Msa0415520:CDS | 45.0% | |
| AATCCAGACGGAGATTTCAC+TGG | - | chr3_2:61721887-61721906 | Msa0415520:CDS | 45.0% | |
| ! | GTCTTCCAAACGCATTGACA+CGG | - | chr3_2:61722403-61722422 | Msa0415520:CDS | 45.0% |
| AAACTCCGTGTCAATGCGTT+TGG | + | chr3_2:61722411-61722430 | None:intergenic | 45.0% | |
| GCCTTGAACTCAGAATTGGA+AGG | - | chr3_2:61722518-61722537 | Msa0415520:intron | 45.0% | |
| CAGATTCTCAGACTGGATCA+TGG | + | chr3_2:61723020-61723039 | None:intergenic | 45.0% | |
| GACTGGCAAAACAAAGACAG+TGG | - | chr3_2:61723132-61723151 | Msa0415520:CDS | 45.0% | |
| TGGAGCACATGCTAATGTTC+TGG | + | chr3_2:61723191-61723210 | None:intergenic | 45.0% | |
| CAACAGGTCTCGAATGAAAG+TGG | - | chr3_2:61723318-61723337 | Msa0415520:CDS | 45.0% | |
| ! | GAAAGATATCCTGGAGGCAT+CGG | + | chr3_2:61723351-61723370 | None:intergenic | 45.0% |
| GAGGACCCCTCAAAACAATA+TGG | - | chr3_2:61723457-61723476 | Msa0415520:CDS | 45.0% | |
| GCATTCTTGACTGTCTTGGA+AGG | - | chr3_2:61723884-61723903 | Msa0415520:intron | 45.0% | |
| GTTGTCTCTCATCACCTATG+AGG | + | chr3_2:61724173-61724192 | None:intergenic | 45.0% | |
| CTAAAGGTTACTGAAGAGGC+TGG | - | chr3_2:61724300-61724319 | Msa0415520:CDS | 45.0% | |
| GTTACTGAAGAGGCTGGATA+TGG | - | chr3_2:61724306-61724325 | Msa0415520:CDS | 45.0% | |
| GTTTGAGAGGCTGGTATTGT+TGG | - | chr3_2:61724338-61724357 | Msa0415520:CDS | 45.0% | |
| GCTAAGGGTAAAGAACAACG+AGG | - | chr3_2:61724537-61724556 | Msa0415520:CDS | 45.0% | |
| CGGACACAGTTCGAAGAATA+TGG | - | chr3_2:61724563-61724582 | Msa0415520:CDS | 45.0% | |
| CAGTTCGAAGAATATGGTCG+AGG | - | chr3_2:61724569-61724588 | Msa0415520:CDS | 45.0% | |
| AGAGACACTTGCCTTCCTTA+AGG | + | chr3_2:61724623-61724642 | None:intergenic | 45.0% | |
| !! | CGTTCTGTTGATGGCTTTCA+AGG | - | chr3_2:61724883-61724902 | Msa0415520:intron | 45.0% |
| !! | TCTGTTGATGGCTTTCAAGG+CGG | - | chr3_2:61724886-61724905 | Msa0415520:intron | 45.0% |
| ATTCGTGCAGACATTGCCTT+TGG | - | chr3_2:61725089-61725108 | Msa0415520:intron | 45.0% | |
| GTACTTGACGCAAAGGAAAG+AGG | - | chr3_2:61725166-61725185 | Msa0415520:intron | 45.0% | |
| GTGTTTCCATAATGCCGATG+AGG | - | chr3_2:61725189-61725208 | Msa0415520:intron | 45.0% | |
| TCTTGTCCTCATCGGCATTA+TGG | + | chr3_2:61725198-61725217 | None:intergenic | 45.0% | |
| AGCCAGTTTCTTGTCCTCAT+CGG | + | chr3_2:61725206-61725225 | None:intergenic | 45.0% | |
| AGACATTTGCAACAACCTCC+AGG | - | chr3_2:61725314-61725333 | Msa0415520:exon | 45.0% | |
| CTACCATATGCTTGCTTACC+TGG | + | chr3_2:61725335-61725354 | None:intergenic | 45.0% | |
| ! | CCTTGTCCCTGCAGAAGTTT+TGG | + | chr3_2:61721573-61721592 | None:intergenic | 50.0% |
| CCAAAACTTCTGCAGGGACA+AGG | - | chr3_2:61721570-61721589 | Msa0415520:CDS | 50.0% | |
| CAAGCTTGTATGGCGTGAAC+CGG | - | chr3_2:61722117-61722136 | Msa0415520:intron | 50.0% | |
| AAGCTTGTATGGCGTGAACC+GGG | - | chr3_2:61722118-61722137 | Msa0415520:intron | 50.0% | |
| TGTAGGACCATATCAGCCAG+AGG | - | chr3_2:61722253-61722272 | Msa0415520:CDS | 50.0% | |
| TCTCCAACCTCTGGCTGATA+TGG | + | chr3_2:61722263-61722282 | None:intergenic | 50.0% | |
| GCAATGAGATCTCCAACCTC+TGG | + | chr3_2:61722272-61722291 | None:intergenic | 50.0% | |
| ! | AAACTTATTTGGGGCCCACC+AGG | - | chr3_2:61723109-61723128 | Msa0415520:CDS | 50.0% |
| ! | AACTTATTTGGGGCCCACCA+GGG | - | chr3_2:61723110-61723129 | Msa0415520:CDS | 50.0% |
| !! | TTGTTTTGCCAGTCCCTGGT+GGG | + | chr3_2:61723126-61723145 | None:intergenic | 50.0% |
| !!! | TTTGTTTTGCCAGTCCCTGG+TGG | + | chr3_2:61723127-61723146 | None:intergenic | 50.0% |
| !!! | GTCTTTGTTTTGCCAGTCCC+TGG | + | chr3_2:61723130-61723149 | None:intergenic | 50.0% |
| ! | AGGTGTTTTGCTCCAACCAC+TGG | - | chr3_2:61723397-61723416 | Msa0415520:CDS | 50.0% |
| ! | GTTTTGCTCCAACCACTGGA+TGG | - | chr3_2:61723401-61723420 | Msa0415520:CDS | 50.0% |
| GAGATTCAGTTCCACCGTAG+CGG | - | chr3_2:61723693-61723712 | Msa0415520:CDS | 50.0% | |
| TAATTTCAGCTCCGCTACGG+TGG | + | chr3_2:61723707-61723726 | None:intergenic | 50.0% | |
| ACTCTCGACGATCATGGAGA+CGG | - | chr3_2:61723856-61723875 | Msa0415520:intron | 50.0% | |
| ! | ACCTGGCAGCTGTAATGGAA+TGG | + | chr3_2:61724136-61724155 | None:intergenic | 50.0% |
| TGAAGACCTGGCAGCTGTAA+TGG | + | chr3_2:61724141-61724160 | None:intergenic | 50.0% | |
| CTTCACCATGCTGTCCTCAT+AGG | - | chr3_2:61724156-61724175 | Msa0415520:intron | 50.0% | |
| CATCACCTATGAGGACAGCA+TGG | + | chr3_2:61724164-61724183 | None:intergenic | 50.0% | |
| TGAGAGACAACTTCCTGCAG+TGG | - | chr3_2:61724182-61724201 | Msa0415520:intron | 50.0% | |
| TCCTGCAGTGGTCAAAAGCA+CGG | - | chr3_2:61724194-61724213 | Msa0415520:intron | 50.0% | |
| GGTAAAGAACAACGAGGTCG+CGG | - | chr3_2:61724543-61724562 | Msa0415520:CDS | 50.0% | |
| !! | GAGCAAATGTGGCACTGACT+CGG | - | chr3_2:61724986-61725005 | Msa0415520:intron | 50.0% |
| !! | AGCAAATGTGGCACTGACTC+GGG | - | chr3_2:61724987-61725006 | Msa0415520:intron | 50.0% |
| TGCCGATGAGGACAAGAAAC+TGG | - | chr3_2:61725201-61725220 | Msa0415520:intron | 50.0% | |
| TGAGGACAAGAAACTGGCTG+AGG | - | chr3_2:61725207-61725226 | Msa0415520:CDS | 50.0% | |
| GAAACTGGCTGAGGCTATTG+AGG | - | chr3_2:61725216-61725235 | Msa0415520:CDS | 50.0% | |
| CCATATGCTTGCTTACCTGG+AGG | + | chr3_2:61725332-61725351 | None:intergenic | 50.0% | |
| CCTCCAGGTAAGCAAGCATA+TGG | - | chr3_2:61725329-61725348 | Msa0415520:five_prime_UTR | 50.0% | |
| GCACCAGTGAAATCTCCGTC+TGG | + | chr3_2:61721893-61721912 | None:intergenic | 55.0% | |
| GGAGATTTCACTGGTGCGAC+AGG | - | chr3_2:61721896-61721915 | Msa0415520:CDS | 55.0% | |
| GGACCATATCAGCCAGAGGT+TGG | - | chr3_2:61722257-61722276 | Msa0415520:CDS | 55.0% | |
| GCCATTCCATTACAGCTGCC+AGG | - | chr3_2:61724132-61724151 | Msa0415520:intron | 55.0% | |
| AGGACAGCATGGTGAAGACC+TGG | + | chr3_2:61724153-61724172 | None:intergenic | 55.0% | |
| ! | ACCGTGCTTTTGACCACTGC+AGG | + | chr3_2:61724198-61724217 | None:intergenic | 55.0% |
| GGACAGTTACCGATGCCTCC+AGG | - | chr3_2:61723339-61723358 | Msa0415520:CDS | 60.0% | |
| !! | ATGTGGCACTGACTCGGGCT+AGG | - | chr3_2:61724992-61725011 | Msa0415520:intron | 60.0% |
| ! | ATTTGGGGCCCACCAGGGAC+TGG | - | chr3_2:61723115-61723134 | Msa0415520:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 61721271 | 61725523 | 61721271 | ID=Msa0415520;Name=Msa0415520 |
| chr3_2 | mRNA | 61721271 | 61725523 | 61721271 | ID=Msa0415520-mRNA-1;Parent=Msa0415520;Name=Msa0415520-mRNA-1;_AED=0.09;_eAED=0.09;_QI=204|0.8|0.66|1|0.8|0.83|6|184|929 |
| chr3_2 | exon | 61721271 | 61721695 | 61721271 | ID=Msa0415520-mRNA-1:exon:13115;Parent=Msa0415520-mRNA-1 |
| chr3_2 | exon | 61721781 | 61722053 | 61721781 | ID=Msa0415520-mRNA-1:exon:13114;Parent=Msa0415520-mRNA-1 |
| chr3_2 | exon | 61722160 | 61722488 | 61722160 | ID=Msa0415520-mRNA-1:exon:13113;Parent=Msa0415520-mRNA-1 |
| chr3_2 | exon | 61722579 | 61723844 | 61722579 | ID=Msa0415520-mRNA-1:exon:13112;Parent=Msa0415520-mRNA-1 |
| chr3_2 | exon | 61724208 | 61724771 | 61724208 | ID=Msa0415520-mRNA-1:exon:13111;Parent=Msa0415520-mRNA-1 |
| chr3_2 | exon | 61725203 | 61725523 | 61725203 | ID=Msa0415520-mRNA-1:exon:13110;Parent=Msa0415520-mRNA-1 |
| chr3_2 | five_prime_UTR | 61725320 | 61725523 | 61725320 | ID=Msa0415520-mRNA-1:five_prime_utr;Parent=Msa0415520-mRNA-1 |
| chr3_2 | CDS | 61725203 | 61725319 | 61725203 | ID=Msa0415520-mRNA-1:cds;Parent=Msa0415520-mRNA-1 |
| chr3_2 | CDS | 61724208 | 61724771 | 61724208 | ID=Msa0415520-mRNA-1:cds;Parent=Msa0415520-mRNA-1 |
| chr3_2 | CDS | 61722579 | 61723844 | 61722579 | ID=Msa0415520-mRNA-1:cds;Parent=Msa0415520-mRNA-1 |
| chr3_2 | CDS | 61722160 | 61722488 | 61722160 | ID=Msa0415520-mRNA-1:cds;Parent=Msa0415520-mRNA-1 |
| chr3_2 | CDS | 61721781 | 61722053 | 61721781 | ID=Msa0415520-mRNA-1:cds;Parent=Msa0415520-mRNA-1 |
| chr3_2 | CDS | 61721455 | 61721695 | 61721455 | ID=Msa0415520-mRNA-1:cds;Parent=Msa0415520-mRNA-1 |
| chr3_2 | three_prime_UTR | 61721271 | 61721454 | 61721271 | ID=Msa0415520-mRNA-1:three_prime_utr;Parent=Msa0415520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
