AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0415770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415770 MtrunA17_Chr3g0109981 97.425 466 3 5 1 461 1 462 0.0 908
Msa0415770 MtrunA17_Chr8g0366281 48.837 215 71 6 257 451 157 352 1.90e-52 180
Msa0415770 MtrunA17_Chr6g0479431 35.666 443 194 16 18 451 7 367 6.78e-50 174
Msa0415770 MtrunA17_Chr5g0410741 50.000 222 67 8 255 453 201 401 5.02e-48 170
Msa0415770 MtrunA17_Chr1g0154261 47.179 195 74 5 267 461 120 285 1.44e-41 149
Msa0415770 MtrunA17_Chr7g0243081 64.179 67 23 1 266 332 65 130 2.61e-21 95.1
Msa0415770 MtrunA17_Chr1g0162931 65.517 58 20 0 272 329 17 74 1.72e-20 91.3
Msa0415770 MtrunA17_Chr1g0210911 63.793 58 21 0 272 329 21 78 5.42e-20 90.9
Msa0415770 MtrunA17_Chr2g0320231 68.966 58 18 0 272 329 96 153 1.86e-19 89.7
Msa0415770 MtrunA17_Chr1g0190301 43.860 114 48 3 253 352 143 254 2.23e-19 89.7
Msa0415770 MtrunA17_Chr8g0379121 67.241 58 19 0 272 329 110 167 6.14e-19 89.0
Msa0415770 MtrunA17_Chr7g0258551 48.837 86 41 2 275 359 214 297 2.99e-18 86.3
Msa0415770 MtrunA17_Chr7g0261911 50.000 86 43 0 274 359 263 348 4.30e-18 86.7
Msa0415770 MtrunA17_Chr2g0288601 66.038 53 18 0 272 324 70 122 8.05e-17 76.6
Msa0415770 MtrunA17_Chr3g0095611 58.929 56 23 0 274 329 20 75 1.12e-16 78.6
Msa0415770 MtrunA17_Chr1g0175091 57.377 61 26 0 275 335 260 320 3.10e-16 80.5
Msa0415770 MtrunA17_Chr5g0409731 67.925 53 17 0 274 326 26 78 3.11e-16 79.0
Msa0415770 MtrunA17_Chr7g0274471 64.286 56 20 0 274 329 219 274 3.23e-16 80.5
Msa0415770 MtrunA17_Chr2g0283951 58.462 65 23 1 272 332 88 152 8.90e-16 79.0
Msa0415770 MtrunA17_Chr7g0254981 63.636 55 20 0 275 329 52 106 1.27e-15 77.0
Msa0415770 MtrunA17_Chr1g0197171 54.930 71 31 1 274 344 45 114 1.37e-15 77.4
Msa0415770 MtrunA17_Chr2g0290991 54.286 70 31 1 274 343 40 108 1.49e-15 77.4
Msa0415770 MtrunA17_Chr8g0356501 51.429 70 34 0 274 343 38 107 2.14e-15 77.4
Msa0415770 MtrunA17_Chr2g0291021 63.636 55 20 0 275 329 51 105 3.99e-15 76.3
Msa0415770 MtrunA17_Chr2g0310011 51.429 70 34 0 274 343 36 105 4.00e-15 76.6
Msa0415770 MtrunA17_Chr2g0321461 58.929 56 23 0 274 329 46 101 7.89e-15 75.9
Msa0415770 MtrunA17_Chr6g0461641 54.237 59 27 0 274 332 43 101 3.84e-14 73.9
Msa0415770 MtrunA17_Chr5g0417521 52.632 57 27 0 274 330 16 72 4.91e-14 73.2
Msa0415770 MtrunA17_Chr4g0042451 54.386 57 26 0 274 330 18 74 1.38e-13 71.6
Msa0415770 MtrunA17_Chr1g0175081 49.180 61 31 0 275 335 24 84 2.30e-13 66.2
Msa0415770 MtrunA17_Chr1g0175071 37.615 109 52 3 275 367 179 287 8.41e-13 69.3
Msa0415770 MtrunA17_Chr7g0242521 55.172 58 23 1 275 329 15 72 5.11e-12 65.9
Msa0415770 MtrunA17_Chr4g0062921 48.529 68 35 0 272 339 234 301 1.26e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415770 AT5G16560.1 40.122 491 173 17 1 458 1 403 1.07e-80 256
Msa0415770 AT1G32240.2 59.627 161 41 4 233 389 186 326 1.60e-49 173
Msa0415770 AT1G32240.1 57.225 173 48 5 223 389 174 326 4.08e-49 172
Msa0415770 AT4G17695.1 34.000 350 131 13 113 454 62 319 7.53e-40 146
Msa0415770 AT5G42630.2 72.727 88 24 0 268 355 100 187 2.99e-36 133
Msa0415770 AT5G42630.1 72.727 88 24 0 268 355 100 187 1.17e-35 133
Msa0415770 AT2G38300.1 33.838 198 100 6 253 447 38 207 1.24e-21 96.3
Msa0415770 AT2G40260.1 33.047 233 111 7 235 461 62 255 4.67e-20 92.4
Msa0415770 AT4G04605.1 67.241 58 19 0 272 329 13 70 4.92e-20 89.0
Msa0415770 AT2G02060.2 65.625 64 20 1 273 334 29 92 9.82e-20 89.0
Msa0415770 AT2G02060.1 65.625 64 20 1 273 334 29 92 9.82e-20 89.0
Msa0415770 AT1G14600.1 66.102 59 20 0 273 331 23 81 2.12e-19 88.2
Msa0415770 AT4G04580.1 59.322 59 24 0 274 332 15 73 3.29e-18 82.4
Msa0415770 AT2G42660.1 66.071 56 19 0 274 329 51 106 1.36e-17 82.8
Msa0415770 AT4G04555.1 58.621 58 24 0 272 329 13 70 1.82e-17 78.2
Msa0415770 AT5G45580.2 54.430 79 26 2 248 326 8 76 2.44e-17 82.4
Msa0415770 AT5G45580.1 67.925 53 17 0 274 326 8 60 4.53e-17 81.3
Msa0415770 AT4G28610.1 58.730 63 26 0 275 337 227 289 5.54e-16 80.1
Msa0415770 AT2G01060.1 63.636 55 20 0 275 329 17 71 2.84e-15 76.6
Msa0415770 AT3G12730.1 60.714 56 22 0 274 329 24 79 3.39e-15 75.5
Msa0415770 AT1G32240.3 54.651 86 28 3 308 389 1 79 4.40e-15 72.8
Msa0415770 AT3G04450.3 55.714 70 30 1 261 329 225 294 5.85e-15 75.9
Msa0415770 AT5G29000.4 55.385 65 29 0 275 339 233 297 7.23e-15 75.9
Msa0415770 AT4G13640.2 62.264 53 20 0 274 326 38 90 7.71e-15 75.5
Msa0415770 AT4G13640.1 62.264 53 20 0 274 326 38 90 7.87e-15 75.5
Msa0415770 AT1G79430.2 50.704 71 35 0 274 344 35 105 9.10e-15 75.9
Msa0415770 AT5G29000.1 63.636 55 20 0 275 329 190 244 1.03e-14 75.9
Msa0415770 AT5G29000.3 63.636 55 20 0 275 329 190 244 1.03e-14 75.9
Msa0415770 AT3G04450.1 55.714 70 30 1 261 329 225 294 1.20e-14 76.3
Msa0415770 AT3G04450.4 55.714 70 30 1 261 329 185 254 1.32e-14 75.9
Msa0415770 AT3G04450.2 55.714 70 30 1 261 329 185 254 1.32e-14 75.9
Msa0415770 AT3G24120.2 55.000 60 27 0 274 333 42 101 1.39e-14 74.7
Msa0415770 AT3G24120.1 55.000 60 27 0 274 333 42 101 1.41e-14 74.7
Msa0415770 AT5G29000.2 63.636 55 20 0 275 329 233 287 1.51e-14 75.9
Msa0415770 AT5G18240.2 52.308 65 31 0 274 338 46 110 1.80e-14 75.5
Msa0415770 AT5G18240.3 52.308 65 31 0 274 338 46 110 1.80e-14 75.5
Msa0415770 AT5G06800.3 56.364 55 24 0 275 329 194 248 1.86e-14 73.9
Msa0415770 AT5G18240.5 52.308 65 31 0 274 338 46 110 1.92e-14 75.5
Msa0415770 AT5G18240.1 52.308 65 31 0 274 338 46 110 1.94e-14 75.5
Msa0415770 AT5G18240.4 52.308 65 31 0 274 338 46 110 1.94e-14 75.5
Msa0415770 AT3G04030.1 49.231 65 33 0 274 338 46 110 3.88e-14 74.3
Msa0415770 AT5G06800.1 40.698 86 48 2 275 359 194 277 3.97e-14 74.3
Msa0415770 AT5G06800.2 37.079 89 52 1 275 359 194 282 4.40e-14 73.9
Msa0415770 AT3G04030.3 49.231 65 33 0 274 338 46 110 4.47e-14 74.3
Msa0415770 AT2G20400.1 57.812 64 27 0 275 338 233 296 5.40e-14 73.9
Msa0415770 AT2G20400.2 57.143 63 27 0 275 337 233 295 9.24e-14 73.2
Msa0415770 AT3G13040.3 61.818 55 21 0 275 329 243 297 2.52e-13 72.0
Msa0415770 AT3G13040.1 61.818 55 21 0 275 329 243 297 2.52e-13 72.0
Msa0415770 AT3G13040.2 61.818 55 21 0 275 329 243 297 2.52e-13 72.0
Msa0415770 AT2G06020.1 47.436 78 40 1 249 326 63 139 2.92e-13 70.9
Msa0415770 AT1G69580.1 50.877 57 28 0 274 330 35 91 3.13e-12 68.2
Msa0415770 AT2G03500.1 45.652 92 44 2 267 358 227 312 3.22e-12 68.6
Msa0415770 AT1G69580.2 50.877 57 28 0 274 330 35 91 3.42e-12 67.8
Msa0415770 AT3G04030.2 47.692 65 33 1 274 338 46 109 1.05e-11 67.0
Msa0415770 AT1G68670.1 43.678 87 47 1 272 358 214 298 2.16e-11 65.5
Msa0415770 AT5G58080.1 37.405 131 68 6 272 390 193 321 4.63e-11 65.5

Find 127 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCCATGGCTGGTAAAA+AGG 0.206571 3_2:+62186333 None:intergenic
GTTCATGCTGTTGAGCTTCT+TGG 0.223702 3_2:-62185941 Msa0415770:CDS
AGTAATAGAGACAACTAATA+TGG 0.235620 3_2:+62181487 None:intergenic
GAGAGAGAGAGGAAGAAGAT+AGG 0.276433 3_2:+62187358 None:intergenic
GTACTTGTCCATCGCATTCT+TGG 0.279145 3_2:+62185980 None:intergenic
AGGGCATCTTCTTTAGAAAA+AGG 0.292586 3_2:+62186815 None:intergenic
AGAATTATGAGGTTCATAAT+TGG 0.296903 3_2:+62186678 None:intergenic
CACATGAATCACATAAATTA+TGG 0.301972 3_2:-62186442 Msa0415770:CDS
AACTAACCTTTGATAATATA+TGG 0.305714 3_2:+62186841 None:intergenic
TAGATATATAATATATAAAT+TGG 0.318867 3_2:-62181405 Msa0415770:three_prime_UTR
AGTCCTTAATATTGTGTTTG+AGG 0.320622 3_2:-62186998 Msa0415770:five_prime_UTR
CATCATCATCACTCACACTA+TGG 0.323012 3_2:-62186088 Msa0415770:CDS
ATGGATGCGACCTATGAAAT+TGG 0.326048 3_2:-62181051 Msa0415770:three_prime_UTR
AGAGAGAGAGGAAGAAGATA+GGG 0.328501 3_2:+62187359 None:intergenic
ATAAGAACTAAGTAAGAATA+TGG 0.342340 3_2:+62181112 None:intergenic
GAAGGAGACGGAGTTGAATT+AGG 0.345696 3_2:+62186268 None:intergenic
GGTGTTGTTGATGTTGAAAT+TGG 0.348173 3_2:+62186772 None:intergenic
GAGGATGATGTACCACAAAT+TGG 0.348731 3_2:-62184626 Msa0415770:CDS
AGTCCTCAAACACAATATTA+AGG 0.351081 3_2:+62186995 None:intergenic
CAAGCTTAATTAATTTCCTT+TGG 0.362356 3_2:-62181513 Msa0415770:exon
ACTCATCCACCAACACTCTA+TGG 0.365181 3_2:-62184529 Msa0415770:CDS
ATTTGATGTCCTCCTGATAT+TGG 0.366341 3_2:+62182479 None:intergenic
GACAAACCTGCAGCTTCTTC+AGG 0.367603 3_2:-62185019 Msa0415770:intron
CCACCATTGCTTCCAATTTG+TGG 0.370237 3_2:+62184614 None:intergenic
TGGTGATATAAACACATCTT+TGG 0.387535 3_2:+62186295 None:intergenic
CCAAGCTTGGAGTTCACATT+AGG 0.389593 3_2:-62181561 Msa0415770:CDS
TGTCCTTTGCCATTCCAATC+TGG 0.391114 3_2:+62181534 None:intergenic
TAATCCATATCTTGCTGTAT+TGG 0.398561 3_2:+62184551 None:intergenic
TTTGGACTTGTTTGTGGCCA+TGG 0.402795 3_2:+62182542 None:intergenic
TTCCAATCACAACCAATATC+AGG 0.403005 3_2:-62182491 Msa0415770:CDS
ATCAGGAGGACATCAAATTC+AGG 0.406345 3_2:-62182474 Msa0415770:intron
TCTCTTGAATGTTCCATGGC+TGG 0.423245 3_2:+62186325 None:intergenic
CTCCTGATATTGGTTGTGAT+TGG 0.426736 3_2:+62182489 None:intergenic
CAAAGTCAAGAGAAAGAAGA+AGG 0.430708 3_2:+62187299 None:intergenic
AATTACTTCTGAAATTATGT+AGG 0.431842 3_2:+62181361 None:intergenic
TAATTCTTCAAGAACAACTT+TGG 0.432310 3_2:-62186662 Msa0415770:CDS
TAGACTGGAATCCCTTTGAT+TGG 0.435250 3_2:+62186373 None:intergenic
TAGACCAATACAGCAAGATA+TGG 0.437170 3_2:-62184555 Msa0415770:CDS
ATCAGTTCCAATACTGACTT+TGG 0.438924 3_2:+62185578 None:intergenic
CTCTATGGAGTAATTCTTCA+AGG 0.442637 3_2:-62184514 Msa0415770:intron
CTGAAACCATCTATGTCGTT+TGG 0.446505 3_2:+62182524 None:intergenic
TTAGGCCTTTCAGATGGATC+TGG 0.451188 3_2:-62184650 Msa0415770:intron
TCACATTAGGCATACCAGAT+TGG 0.452124 3_2:-62181548 Msa0415770:CDS
GTTATTAAACCTTGTGGCTA+CGG 0.456769 3_2:+62186150 None:intergenic
ACAAGTCCAAACGACATAGA+TGG 0.458406 3_2:-62182530 Msa0415770:CDS
ATGTCGTTTGGACTTGTTTG+TGG 0.463624 3_2:+62182536 None:intergenic
CACTCACACTATGGGAGTGT+TGG 0.469128 3_2:-62186079 Msa0415770:CDS
CAGCTCAAGAACAATTTGTC+AGG 0.473778 3_2:-62181606 Msa0415770:CDS
ATTACTTCTGAAATTATGTA+GGG 0.474169 3_2:+62181362 None:intergenic
TGAAGTGGAGAGAAGAATGA+TGG 0.475084 3_2:+62187396 None:intergenic
GAGAGAGAGGAAGAAGATAG+GGG 0.480199 3_2:+62187360 None:intergenic
GCTCACACTGAACTATCTCT+TGG 0.484804 3_2:-62186628 Msa0415770:CDS
CCTAATGTGAACTCCAAGCT+TGG 0.485539 3_2:+62181561 None:intergenic
GGTTGTGATTGGAAGATAGT+TGG 0.486453 3_2:+62182500 None:intergenic
CATGCTGTTGAGCTTCTTGG+TGG 0.491060 3_2:-62185938 Msa0415770:CDS
AGAGGTGAAGATGACGAAGA+AGG 0.493765 3_2:+62186250 None:intergenic
TTTATTTATTGGTGAGGAGG+AGG 0.496472 3_2:-62181290 Msa0415770:three_prime_UTR
TCTATAAGCCGCAGAGCCAC+TGG 0.501461 3_2:+62186177 None:intergenic
GTTGTTCTTGAAGAATTATG+AGG 0.504302 3_2:+62186667 None:intergenic
CAAACAAGAACCAATTTCAT+AGG 0.504444 3_2:+62181041 None:intergenic
CTAATGTGAACTCCAAGCTT+GGG 0.507483 3_2:+62181562 None:intergenic
GACGAAGTTATGTCATATTG+TGG 0.515199 3_2:+62181442 None:intergenic
TTGTAACCATATATTATCAA+AGG 0.515599 3_2:-62186847 Msa0415770:five_prime_UTR
AAAGTCAGTATTGGAACTGA+TGG 0.515750 3_2:-62185576 Msa0415770:CDS
TTCAATGAAAATCCCTTCCA+AGG 0.520306 3_2:+62186795 None:intergenic
AGCAACACCAAAGTCAGTAT+TGG 0.520531 3_2:-62185585 Msa0415770:CDS
GTAATAGAGACAACTAATAT+GGG 0.520741 3_2:+62181488 None:intergenic
AAGCATCCATGATGAGATCA+AGG 0.522822 3_2:-62186042 Msa0415770:CDS
CTAAAGAAGATGCCCTTGGA+AGG 0.522865 3_2:-62186808 Msa0415770:exon
GTGTGATACTCACGAATAGC+AGG 0.530831 3_2:+62181079 None:intergenic
CACTATGGGAGTGTTGGACT+TGG 0.532107 3_2:-62186073 Msa0415770:CDS
TGGAGAGAAGAATGATGGAA+TGG 0.532783 3_2:+62187401 None:intergenic
GAGAAGAATGATGGAATGGA+AGG 0.535420 3_2:+62187405 None:intergenic
AGTGAGGAAAATGAGCTTGT+TGG 0.536485 3_2:+62186530 None:intergenic
ATTGAAATTGACAGAGCAAG+AGG 0.537499 3_2:+62181165 None:intergenic
ATTACTCCATAGAGTGTTGG+TGG 0.540356 3_2:+62184523 None:intergenic
CCACAAATTGGAAGCAATGG+TGG 0.541302 3_2:-62184614 Msa0415770:CDS
GAAGAATTAGAAGTACTTGG+TGG 0.543073 3_2:+62186724 None:intergenic
GGTTGTTGTTGATGTTGTTG+TGG 0.543246 3_2:+62186574 None:intergenic
AATGAACGGTTATGATAGAC+TGG 0.547430 3_2:+62186358 None:intergenic
ATCATCATCACTCACACTAT+GGG 0.548466 3_2:-62186087 Msa0415770:CDS
AAGGGTTAAGACCAATCAAA+GGG 0.548805 3_2:-62186384 Msa0415770:CDS
TAATATATAAATTGGTGTGA+AGG 0.552524 3_2:-62181397 Msa0415770:three_prime_UTR
AGAGTGTAAGAACCCAAGCT+TGG 0.553018 3_2:-62181574 Msa0415770:CDS
AAAGAAGAATTAGAAGTACT+TGG 0.553090 3_2:+62186721 None:intergenic
GAATGATGGAATGGAAGGGA+AGG 0.554334 3_2:+62187410 None:intergenic
TGATGATGATGGTGGTGCAA+TGG 0.555394 3_2:+62186103 None:intergenic
CGTGAGTATCACACTTAACA+TGG 0.557883 3_2:-62181070 Msa0415770:three_prime_UTR
TTATGAGGTTCATAATTGGA+TGG 0.559155 3_2:+62186682 None:intergenic
GGAAAAGAAATATTCCAGAA+AGG 0.559752 3_2:+62187462 None:intergenic
GAAGGGTTAAGACCAATCAA+AGG 0.563565 3_2:-62186385 Msa0415770:CDS
TAAAGAAGATGCCCTTGGAA+GGG 0.566491 3_2:-62186807 Msa0415770:exon
GTTGGATTAGGCCTTTCAGA+TGG 0.566808 3_2:-62184656 Msa0415770:intron
GAATTACCTGAAGAAGCTGC+AGG 0.569581 3_2:+62185013 None:intergenic
AAAGTCAAGAGAAAGAAGAA+GGG 0.571326 3_2:+62187300 None:intergenic
AGGTTCGTTATTAAACCTTG+TGG 0.572358 3_2:+62186144 None:intergenic
GTGTCATCAACATCATCAGA+AGG 0.572682 3_2:-62186403 Msa0415770:CDS
GGATATTGATGAGATTTGAA+AGG 0.577391 3_2:+62186124 None:intergenic
CTTATGTGAAGAGAAAGATC+AGG 0.587834 3_2:+62186748 None:intergenic
AGAATTACTCCATAGAGTGT+TGG 0.593216 3_2:+62184520 None:intergenic
ACAACTAATATGGGAACCAA+AGG 0.597571 3_2:+62181497 None:intergenic
GAAGATGACGAAGAAGGAGA+CGG 0.598612 3_2:+62186256 None:intergenic
CAGCATGAACAAATCTAGCA+TGG 0.601911 3_2:+62185954 None:intergenic
ATTAAACCTTGTGGCTACGG+CGG 0.603335 3_2:+62186153 None:intergenic
AAGTGCAATATTCACAAGCA+AGG 0.606675 3_2:+62186942 None:intergenic
AGAAGAATGATGGAATGGAA+GGG 0.611147 3_2:+62187406 None:intergenic
TATTCAAAAGCTATAGCACA+AGG 0.614588 3_2:-62187136 Msa0415770:five_prime_UTR
GTACCACAAATTGGAAGCAA+TGG 0.620505 3_2:-62184617 Msa0415770:CDS
ATACCAGATTGGAATGGCAA+AGG 0.624282 3_2:-62181537 Msa0415770:CDS
TGAGAGCACCAAGAATGCGA+TGG 0.625062 3_2:-62185988 Msa0415770:CDS
CCTCTCCAGATCCATCTGAA+AGG 0.630610 3_2:+62184645 None:intergenic
GACATAACTTCGTCATGCAG+AGG 0.636843 3_2:-62181433 Msa0415770:three_prime_UTR
TTGTTGTGATGTTGAAAGTG+AGG 0.638425 3_2:+62186514 None:intergenic
TCAATGAAAATCCCTTCCAA+GGG 0.641425 3_2:+62186796 None:intergenic
TGTCATCAACATCATCAGAA+GGG 0.646503 3_2:-62186402 Msa0415770:CDS
ATTGGAACTGATGGATGTGA+AGG 0.646666 3_2:-62185567 Msa0415770:CDS
TTTAAACTCCAGTGGCTCTG+CGG 0.648557 3_2:-62186185 Msa0415770:CDS
CCTTTCAGATGGATCTGGAG+AGG 0.652978 3_2:-62184645 Msa0415770:CDS
TTAGGCATACCAGATTGGAA+TGG 0.661276 3_2:-62181543 Msa0415770:CDS
ATAGAGCCGCCGTAGCCACA+AGG 0.664238 3_2:-62186159 Msa0415770:CDS
ATGTGAAGAGAAAGATCAGG+TGG 0.665926 3_2:+62186751 None:intergenic
GTGAGTGATGATGATGATGG+TGG 0.675410 3_2:+62186095 None:intergenic
GCTGCATATGTAGAAGAACA+AGG 0.676730 3_2:-62181239 Msa0415770:three_prime_UTR
ACGGAGTTGAATTAGGCATG+TGG 0.690652 3_2:+62186275 None:intergenic
CAATCACAACCAATATCAGG+AGG 0.694629 3_2:-62182488 Msa0415770:CDS
AGTGTGAGTGATGATGATGA+TGG 0.709391 3_2:+62186092 None:intergenic
TGATCAGTAGTAGAGAACCA+TGG 0.715843 3_2:-62182559 Msa0415770:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTAATAAATTTATTTT+TGG - chr3_2:62183823-62183842 Msa0415770:intron 0.0%
!! ATTAAAATCAGATTAAAAAA+AGG + chr3_2:62181608-62181627 None:intergenic 10.0%
!!! TTTTAATCTGATTTTAATAA+AGG - chr3_2:62181610-62181629 Msa0415770:CDS 10.0%
!!! TTTTCTTCTTTTAAATTTTT+TGG - chr3_2:62182638-62182657 Msa0415770:intron 10.0%
!! ATATATAAAAAATTTAAGCA+AGG + chr3_2:62183763-62183782 None:intergenic 10.0%
!!! TTTTTTATGAAGAATAAAAA+GGG - chr3_2:62184206-62184225 Msa0415770:intron 10.0%
!!! TTATATATGTTTTTTAAAGT+TGG - chr3_2:62184608-62184627 Msa0415770:CDS 10.0%
!! GTAACATATAAATTTATAAA+TGG - chr3_2:62184775-62184794 Msa0415770:intron 10.0%
!!! AATATTATTTTTCCAATAAT+TGG + chr3_2:62185724-62185743 None:intergenic 10.0%
!!! TTTAATTTTAGATTTCATTT+TGG + chr3_2:62186472-62186491 None:intergenic 10.0%
!!! GAAATCTAAAATTAAATTAA+AGG - chr3_2:62186476-62186495 Msa0415770:CDS 10.0%
!!! AATAATTGTTTTAAGAAGAA+AGG + chr3_2:62181087-62181106 None:intergenic 15.0%
!! TTAAAAGAAGAAAATTAAAG+TGG + chr3_2:62182632-62182651 None:intergenic 15.0%
!!! TCTTTTAAATTTTTTGGATA+CGG - chr3_2:62182644-62182663 Msa0415770:intron 15.0%
!! ATATCTTATTCAATACAAAT+AGG - chr3_2:62183342-62183361 Msa0415770:intron 15.0%
!! GTAATTATTAGACTAATTAA+GGG + chr3_2:62183560-62183579 None:intergenic 15.0%
!!! CTTAATTAGTCTAATAATTA+CGG - chr3_2:62183559-62183578 Msa0415770:intron 15.0%
!! AAAAAAATGTGAAAAGAATA+AGG + chr3_2:62183645-62183664 None:intergenic 15.0%
!! GAGTAATTATAAATTAATGT+TGG - chr3_2:62183845-62183864 Msa0415770:intron 15.0%
!! TTATAAATTAATGTTGGATT+AGG - chr3_2:62183851-62183870 Msa0415770:intron 15.0%
!!! CTTTTTTATGAAGAATAAAA+AGG - chr3_2:62184205-62184224 Msa0415770:intron 15.0%
!! TATAAATTGTTAATGTTACT+TGG + chr3_2:62184593-62184612 None:intergenic 15.0%
!! CTTCAAATTAATTTAAACTT+AGG + chr3_2:62185072-62185091 None:intergenic 15.0%
!! TATCAAAAACAAAATAAAGA+AGG + chr3_2:62185139-62185158 None:intergenic 15.0%
!! AAATATCTTGATTACTATAA+AGG + chr3_2:62185287-62185306 None:intergenic 15.0%
!!! AAGATATTTTAAAAATTGAG+AGG - chr3_2:62185298-62185317 Msa0415770:intron 15.0%
!! TGAAAAAAGTTTATAAATTC+TGG - chr3_2:62185768-62185787 Msa0415770:intron 15.0%
!! GAAACCTAAAATTAATTTAA+GGG + chr3_2:62186161-62186180 None:intergenic 15.0%
!! TGAAACCTAAAATTAATTTA+AGG + chr3_2:62186162-62186181 None:intergenic 15.0%
!! ATCTTAATATTTGTAACTTA+AGG - chr3_2:62186360-62186379 Msa0415770:CDS 15.0%
!!! TAATTGAAAGCATTTTTTTT+TGG + chr3_2:62186701-62186720 None:intergenic 15.0%
!!! TTATTTTTTATTTATTGGTG+AGG - chr3_2:62187223-62187242 Msa0415770:intron 15.0%
!! AGAAAGCAAAAAAAAAAGAT+TGG + chr3_2:62181346-62181365 None:intergenic 20.0%
!! TTGTAACCATATATTATCAA+AGG - chr3_2:62181672-62181691 Msa0415770:intron 20.0%
!!! AACTAACCTTTGATAATATA+TGG + chr3_2:62181681-62181700 None:intergenic 20.0%
!! AATCTAATACAGTTGTAAAA+TGG + chr3_2:62182682-62182701 None:intergenic 20.0%
!!! ATTGTTGTTGTTATTATGTT+TGG - chr3_2:62182861-62182880 Msa0415770:intron 20.0%
!!! TATGTTTGGTGTTATATTAT+AGG - chr3_2:62182875-62182894 Msa0415770:intron 20.0%
!!! TAATTTAGATGGTGAATTTT+AGG - chr3_2:62182911-62182930 Msa0415770:intron 20.0%
!! ATATGAAATTGAAATGAAAC+TGG - chr3_2:62183040-62183059 Msa0415770:intron 20.0%
!! TATGAAATTGAAATGAAACT+GGG - chr3_2:62183041-62183060 Msa0415770:intron 20.0%
!! CGTAATTATTAGACTAATTA+AGG + chr3_2:62183561-62183580 None:intergenic 20.0%
!! TTCACATATATAGACTTTAA+AGG + chr3_2:62183685-62183704 None:intergenic 20.0%
!! AAATTTAAGCAAGGTAATTA+AGG + chr3_2:62183754-62183773 None:intergenic 20.0%
!! CAAAAGTAAATAAACAAAGT+CGG + chr3_2:62184128-62184147 None:intergenic 20.0%
!! TCCTAATATTACAAATTTCA+AGG - chr3_2:62184461-62184480 Msa0415770:intron 20.0%
!! ATATATGAAGGACTTAATTT+GGG + chr3_2:62184555-62184574 None:intergenic 20.0%
!! AATATATGAAGGACTTAATT+TGG + chr3_2:62184556-62184575 None:intergenic 20.0%
!! AATACATAGTCAATATATGA+AGG + chr3_2:62184567-62184586 None:intergenic 20.0%
!! CTATAATTGAAATCTGTTTA+TGG + chr3_2:62184668-62184687 None:intergenic 20.0%
!! AAACCTAACAAATTCTAATA+TGG - chr3_2:62184828-62184847 Msa0415770:intron 20.0%
!! AACATATGGTAATAATTTCA+TGG + chr3_2:62184888-62184907 None:intergenic 20.0%
!! TTATTACCATATGTTGTATT+TGG - chr3_2:62184893-62184912 Msa0415770:intron 20.0%
!! TAAGTGGAAATTTAAGTAAA+GGG + chr3_2:62184928-62184947 None:intergenic 20.0%
!! TTAAGTGGAAATTTAAGTAA+AGG + chr3_2:62184929-62184948 None:intergenic 20.0%
!! TATAATTCGTGTAATTTAAG+TGG + chr3_2:62184944-62184963 None:intergenic 20.0%
!! ATTATATTAGAATAACCATG+TGG - chr3_2:62184958-62184977 Msa0415770:intron 20.0%
!!! CTTTTGCTTTTATTTTTTGA+TGG + chr3_2:62185008-62185027 None:intergenic 20.0%
!!! TCAAAAAAAAAAAGGTGTAT+AGG + chr3_2:62185098-62185117 None:intergenic 20.0%
!!! TATACACCTTTTTTTTTTTG+AGG - chr3_2:62185097-62185116 Msa0415770:intron 20.0%
!!! ATACACCTTTTTTTTTTTGA+GGG - chr3_2:62185098-62185117 Msa0415770:intron 20.0%
!! ACAAAATAAAGAAGGTTTAT+AGG + chr3_2:62185131-62185150 None:intergenic 20.0%
!! AGATATTTCATGTTTACTTA+AGG + chr3_2:62185461-62185480 None:intergenic 20.0%
!! CAAGTATATGATATATTGAT+AGG + chr3_2:62185621-62185640 None:intergenic 20.0%
!! GGAAAAATAATATTCTACAT+TGG - chr3_2:62185730-62185749 Msa0415770:intron 20.0%
!!! TGATGCAATTTTTTTTTTCT+TGG - chr3_2:62185910-62185929 Msa0415770:intron 20.0%
!!! TAGTCCCTTAAATTAATTTT+AGG - chr3_2:62186154-62186173 Msa0415770:CDS 20.0%
!! AATGAAACGAAAAAAACTTA+AGG + chr3_2:62186252-62186271 None:intergenic 20.0%
!!! AAGTTTTTTTCGTTTCATTT+TGG - chr3_2:62186253-62186272 Msa0415770:CDS 20.0%
!!! GACATTTTAGTTTATCATTT+CGG - chr3_2:62186327-62186346 Msa0415770:CDS 20.0%
!!! ACATTTTAGTTTATCATTTC+GGG - chr3_2:62186328-62186347 Msa0415770:CDS 20.0%
!! TAATATATAAATTGGTGTGA+AGG - chr3_2:62187122-62187141 Msa0415770:five_prime_UTR 20.0%
!!! ATTACTTCTGAAATTATGTA+GGG + chr3_2:62187160-62187179 None:intergenic 20.0%
!!! AATTACTTCTGAAATTATGT+AGG + chr3_2:62187161-62187180 None:intergenic 20.0%
!! ATAAGAACTAAGTAAGAATA+TGG + chr3_2:62187410-62187429 None:intergenic 20.0%
!!! TGTTTTAAGAAGAAAGGAAA+AGG + chr3_2:62181081-62181100 None:intergenic 25.0%
!!! TCTTTTTTTAGGCTTTTCTT+TGG + chr3_2:62181470-62181489 None:intergenic 25.0%
!!! GCTCTTTGTTTTCTTTTTTT+AGG + chr3_2:62181481-62181500 None:intergenic 25.0%
! TTGAACAAAAACAAAAGGAT+TGG - chr3_2:62181547-62181566 Msa0415770:CDS 25.0%
!!! AAAGAAGAATTAGAAGTACT+TGG + chr3_2:62181801-62181820 None:intergenic 25.0%
! AGAATTATGAGGTTCATAAT+TGG + chr3_2:62181844-62181863 None:intergenic 25.0%
! TAATTCTTCAAGAACAACTT+TGG - chr3_2:62181857-62181876 Msa0415770:intron 25.0%
!!! TTTTGATAATAAGGGTTATG+TGG + chr3_2:62181969-62181988 None:intergenic 25.0%
!!! CTTGTTGGTTTTGATAATAA+GGG + chr3_2:62181977-62181996 None:intergenic 25.0%
! CACATGAATCACATAAATTA+TGG - chr3_2:62182077-62182096 Msa0415770:intron 25.0%
! GAGAAAAATGTTTACTTTCA+TGG + chr3_2:62182607-62182626 None:intergenic 25.0%
!! GGTGTTATATTATAGGTATT+TGG - chr3_2:62182882-62182901 Msa0415770:intron 25.0%
! TTTGGCTAATGTAATTTAGA+TGG - chr3_2:62182900-62182919 Msa0415770:intron 25.0%
! TTAAGTAGTAAGCTAAAAGA+AGG - chr3_2:62183137-62183156 Msa0415770:intron 25.0%
! TAAAATATGCATTAATCACG+AGG + chr3_2:62183310-62183329 None:intergenic 25.0%
! AATTTCTTGTGTTGAAATTG+TGG - chr3_2:62183395-62183414 Msa0415770:intron 25.0%
! GACTAATTAAGGGAAAAAAA+TGG + chr3_2:62183550-62183569 None:intergenic 25.0%
!! TATATATGTGAACACTTTTG+AGG - chr3_2:62183693-62183712 Msa0415770:intron 25.0%
!!! TATTTACTTTTGCTTTTGCA+TGG - chr3_2:62184136-62184155 Msa0415770:intron 25.0%
! AAGGTACAAAAGATATACAA+AGG + chr3_2:62184290-62184309 None:intergenic 25.0%
! GCCTTGAAATTTGTAATATT+AGG + chr3_2:62184465-62184484 None:intergenic 25.0%
! TCAAGATCCATATCAATATT+CGG + chr3_2:62184506-62184525 None:intergenic 25.0%
! TATAGTGTTACACTTCATAT+TGG - chr3_2:62184683-62184702 Msa0415770:intron 25.0%
!! TGTCAACTTATCAACTATTT+TGG + chr3_2:62184724-62184743 None:intergenic 25.0%
!! GATAAGTTGACAATATAATC+TGG - chr3_2:62184732-62184751 Msa0415770:intron 25.0%
! ACATTTCCAAATACAACATA+TGG + chr3_2:62184902-62184921 None:intergenic 25.0%
! ACTTTCCCTCAAAAAAAAAA+AGG + chr3_2:62185106-62185125 None:intergenic 25.0%
! TCTCATTAAGTAAACATTAG+TGG - chr3_2:62185512-62185531 Msa0415770:intron 25.0%
! AAAAAATTGCATCAGTTCAA+TGG + chr3_2:62185904-62185923 None:intergenic 25.0%
! GTCTAACGTTTGTAATTTAA+GGG + chr3_2:62186220-62186239 None:intergenic 25.0%
! TGTCTAACGTTTGTAATTTA+AGG + chr3_2:62186221-62186240 None:intergenic 25.0%
!!! CATTTTAGTTTATCATTTCG+GGG - chr3_2:62186329-62186348 Msa0415770:CDS 25.0%
! CCTGAATTGAAATTCATTAA+TGG + chr3_2:62186566-62186585 None:intergenic 25.0%
! CCATTAATGAATTTCAATTC+AGG - chr3_2:62186563-62186582 Msa0415770:CDS 25.0%
!!! TTTTAGGAAAATGGTCAATA+TGG + chr3_2:62186662-62186681 None:intergenic 25.0%
!!! CTTTACGATTTTTAGGAAAA+TGG + chr3_2:62186671-62186690 None:intergenic 25.0%
!! CATTTTCCTAAAAATCGTAA+AGG - chr3_2:62186669-62186688 Msa0415770:CDS 25.0%
!! ACTTAACCTTTACGATTTTT+AGG + chr3_2:62186678-62186697 None:intergenic 25.0%
! CAAGCTTAATTAATTTCCTT+TGG - chr3_2:62187006-62187025 Msa0415770:five_prime_UTR 25.0%
! GTAATAGAGACAACTAATAT+GGG + chr3_2:62187034-62187053 None:intergenic 25.0%
! AGTAATAGAGACAACTAATA+TGG + chr3_2:62187035-62187054 None:intergenic 25.0%
!!! TTTTTTATTTATTGGTGAGG+AGG - chr3_2:62187226-62187245 Msa0415770:intron 25.0%
GGAAAAGAAATATTCCAGAA+AGG + chr3_2:62181060-62181079 None:intergenic 30.0%
AAAGTCAAGAGAAAGAAGAA+GGG + chr3_2:62181222-62181241 None:intergenic 30.0%
AAGCTAAGAAGAAAAAGAAG+AGG + chr3_2:62181274-62181293 None:intergenic 30.0%
TATTCAAAAGCTATAGCACA+AGG - chr3_2:62181383-62181402 Msa0415770:three_prime_UTR 30.0%
AGTCCTTAATATTGTGTTTG+AGG - chr3_2:62181521-62181540 Msa0415770:exon 30.0%
AGTCCTCAAACACAATATTA+AGG + chr3_2:62181527-62181546 None:intergenic 30.0%
GGACTTTGAACAAAAACAAA+AGG - chr3_2:62181542-62181561 Msa0415770:CDS 30.0%
TTATGAGGTTCATAATTGGA+TGG + chr3_2:62181840-62181859 None:intergenic 30.0%
GTTGTTCTTGAAGAATTATG+AGG + chr3_2:62181855-62181874 None:intergenic 30.0%
!!! CTTGGAAGAAATTTTAGTTG+TGG - chr3_2:62181909-62181928 Msa0415770:intron 30.0%
!!! GCTTGTTGGTTTTGATAATA+AGG + chr3_2:62181978-62181997 None:intergenic 30.0%
! TTTTTCTCTTGAATGTTCCA+TGG + chr3_2:62182201-62182220 None:intergenic 30.0%
TGGTGATATAAACACATCTT+TGG + chr3_2:62182227-62182246 None:intergenic 30.0%
GGATATTGATGAGATTTGAA+AGG + chr3_2:62182398-62182417 None:intergenic 30.0%
TCATGTAAAAAGTCATTTGC+AGG - chr3_2:62182988-62183007 Msa0415770:intron 30.0%
GATAATAAGGTTGTAATGAG+AGG + chr3_2:62183278-62183297 None:intergenic 30.0%
!! GAGGTTGATGTTTGATAATA+AGG + chr3_2:62183291-62183310 None:intergenic 30.0%
TTTAAGCAAGGTAATTAAGG+TGG + chr3_2:62183751-62183770 None:intergenic 30.0%
! GTCAATTTTCAGATCAAAGA+GGG - chr3_2:62183933-62183952 Msa0415770:intron 30.0%
! TAATCCATATCTTGCTGTAT+TGG + chr3_2:62183971-62183990 None:intergenic 30.0%
!! CTTCATAAAAAAGAGTGTTG+TGG + chr3_2:62184198-62184217 None:intergenic 30.0%
AAGAATAAAAAGGGTTCTTG+TGG - chr3_2:62184215-62184234 Msa0415770:intron 30.0%
! TCTTTTGTACCTTAGTGATT+TGG - chr3_2:62184297-62184316 Msa0415770:intron 30.0%
TCATAACCCGAATATTGATA+TGG - chr3_2:62184496-62184515 Msa0415770:intron 30.0%
CAAGATCCATATCAATATTC+GGG + chr3_2:62184505-62184524 None:intergenic 30.0%
!! TTGGGTTTTATGTAATCTAC+AGG + chr3_2:62184537-62184556 None:intergenic 30.0%
TTGCACAAATCAAGAAATAG+TGG - chr3_2:62184632-62184651 Msa0415770:CDS 30.0%
! GGTCCATATTAGAATTTGTT+AGG + chr3_2:62184834-62184853 None:intergenic 30.0%
! ACCTCTAAAAAATAGTCTAC+AGG - chr3_2:62184851-62184870 Msa0415770:intron 30.0%
!!! ACCTGTAGACTATTTTTTAG+AGG + chr3_2:62184855-62184874 None:intergenic 30.0%
ATTTAAACTTAGGTGCAAGA+GGG + chr3_2:62185062-62185081 None:intergenic 30.0%
AATTTAAACTTAGGTGCAAG+AGG + chr3_2:62185063-62185082 None:intergenic 30.0%
GATTACTATAAAGGTAGAAC+TGG + chr3_2:62185278-62185297 None:intergenic 30.0%
AATGACAGACAGTAGTTAAT+AGG + chr3_2:62185387-62185406 None:intergenic 30.0%
CATTAAGTAAACATTAGTGG+TGG - chr3_2:62185515-62185534 Msa0415770:intron 30.0%
AAGGCTCATAATAGTAAGTT+TGG - chr3_2:62185554-62185573 Msa0415770:CDS 30.0%
GAAATATACTCGAGTGTAAT+TGG - chr3_2:62185576-62185595 Msa0415770:CDS 30.0%
TAGTTGTAATACATAGCCTT+AGG - chr3_2:62185659-62185678 Msa0415770:intron 30.0%
TGTCCAACATTCATAACTTA+AGG - chr3_2:62186391-62186410 Msa0415770:CDS 30.0%
GTCCAACATTCATAACTTAA+GGG - chr3_2:62186392-62186411 Msa0415770:CDS 30.0%
! TACAAGCTAGTTTCTTAAGT+TGG + chr3_2:62186429-62186448 None:intergenic 30.0%
TTGTACAAGTTTGTAGCTTA+AGG - chr3_2:62186444-62186463 Msa0415770:CDS 30.0%
TGTACAAGTTTGTAGCTTAA+GGG - chr3_2:62186445-62186464 Msa0415770:CDS 30.0%
CTAATGATTGTTTCCATTAC+AGG - chr3_2:62186876-62186895 Msa0415770:five_prime_UTR 30.0%
! AGAAGAATGATGGAATGGAA+GGG + chr3_2:62181116-62181135 None:intergenic 35.0%
! CTCATCACACTTTTCTTTCA+TGG - chr3_2:62181195-62181214 Msa0415770:three_prime_UTR 35.0%
CAAAGTCAAGAGAAAGAAGA+AGG + chr3_2:62181223-62181242 None:intergenic 35.0%
AGAAGAAAAAGAAGAGGTCA+TGG + chr3_2:62181268-62181287 None:intergenic 35.0%
!! GCTTTTCTTTGGAAAGAATC+TGG + chr3_2:62181459-62181478 None:intergenic 35.0%
AAGTGCAATATTCACAAGCA+AGG + chr3_2:62181580-62181599 None:intergenic 35.0%
! GCATCTTCTTTAGAAAAAGG+TGG + chr3_2:62181704-62181723 None:intergenic 35.0%
! AGGGCATCTTCTTTAGAAAA+AGG + chr3_2:62181707-62181726 None:intergenic 35.0%
!! TTTTCTAAAGAAGATGCCCT+TGG - chr3_2:62181707-62181726 Msa0415770:intron 35.0%
TCAATGAAAATCCCTTCCAA+GGG + chr3_2:62181726-62181745 None:intergenic 35.0%
TTCAATGAAAATCCCTTCCA+AGG + chr3_2:62181727-62181746 None:intergenic 35.0%
!! GGTGTTGTTGATGTTGAAAT+TGG + chr3_2:62181750-62181769 None:intergenic 35.0%
CTTATGTGAAGAGAAAGATC+AGG + chr3_2:62181774-62181793 None:intergenic 35.0%
!! GAAGAATTAGAAGTACTTGG+TGG + chr3_2:62181798-62181817 None:intergenic 35.0%
TTGTTGTGATGTTGAAAGTG+AGG + chr3_2:62182008-62182027 None:intergenic 35.0%
TGTCATCAACATCATCAGAA+GGG - chr3_2:62182117-62182136 Msa0415770:intron 35.0%
AAGGGTTAAGACCAATCAAA+GGG - chr3_2:62182135-62182154 Msa0415770:intron 35.0%
AATGAACGGTTATGATAGAC+TGG + chr3_2:62182164-62182183 None:intergenic 35.0%
CTGGAGTTTAAAAACGACAT+GGG + chr3_2:62182326-62182345 None:intergenic 35.0%
ACTGGAGTTTAAAAACGACA+TGG + chr3_2:62182327-62182346 None:intergenic 35.0%
!!! ATGTCGTTTTTAAACTCCAG+TGG - chr3_2:62182326-62182345 Msa0415770:intron 35.0%
GTTATTAAACCTTGTGGCTA+CGG + chr3_2:62182372-62182391 None:intergenic 35.0%
AGGTTCGTTATTAAACCTTG+TGG + chr3_2:62182378-62182397 None:intergenic 35.0%
ATCATCATCACTCACACTAT+GGG - chr3_2:62182432-62182451 Msa0415770:intron 35.0%
CAAAAACCTTGATCTCATCA+TGG + chr3_2:62182486-62182505 None:intergenic 35.0%
! CTTCTTTTTGTCGGCAATTT+AGG + chr3_2:62182509-62182528 None:intergenic 35.0%
!! ATCAGTTCCAATACTGACTT+TGG + chr3_2:62182944-62182963 None:intergenic 35.0%
! AAAGTCAGTATTGGAACTGA+TGG - chr3_2:62182943-62182962 Msa0415770:intron 35.0%
ATAGCCAATGAAGAAGAAAG+TGG - chr3_2:62183068-62183087 Msa0415770:intron 35.0%
CAGTGAATGAATGAATGTGT+GGG - chr3_2:62183093-62183112 Msa0415770:intron 35.0%
TGAGAGGATTGTTGCATTAT+TGG + chr3_2:62183262-62183281 None:intergenic 35.0%
! CGTCAATTTTCAGATCAAAG+AGG - chr3_2:62183932-62183951 Msa0415770:intron 35.0%
TAGACCAATACAGCAAGATA+TGG - chr3_2:62183964-62183983 Msa0415770:intron 35.0%
AGAATTACTCCATAGAGTGT+TGG + chr3_2:62184002-62184021 None:intergenic 35.0%
CTCTATGGAGTAATTCTTCA+AGG - chr3_2:62184005-62184024 Msa0415770:intron 35.0%
! TTTGTACCTTAGTGATTTGG+TGG - chr3_2:62184300-62184319 Msa0415770:intron 35.0%
TAATCGAATGCTCATTCGTT+AGG - chr3_2:62184361-62184380 Msa0415770:intron 35.0%
TGCTCATTCGTTAGGATAAA+TGG - chr3_2:62184369-62184388 Msa0415770:intron 35.0%
CAAACATACACACAAGTCAA+AGG + chr3_2:62184439-62184458 None:intergenic 35.0%
AGGCATGTCTTTCTCTTATT+AGG - chr3_2:62185318-62185337 Msa0415770:intron 35.0%
TAAGTAAACATTAGTGGTGG+TGG - chr3_2:62185518-62185537 Msa0415770:intron 35.0%
TTACTATTATGAGCCTTGCA+TGG + chr3_2:62185551-62185570 None:intergenic 35.0%
! GTAATACATAGCCTTAGGAT+TGG - chr3_2:62185664-62185683 Msa0415770:intron 35.0%
TACCACTTAAACCAATCCTA+AGG + chr3_2:62185678-62185697 None:intergenic 35.0%
ATAATTGGAGATGCTCTTGA+TGG + chr3_2:62185709-62185728 None:intergenic 35.0%
!! TCAAGAGCATCTCCAATTAT+TGG - chr3_2:62185709-62185728 Msa0415770:intron 35.0%
!! TGCATGAACTGTTTTGTTGA+TGG + chr3_2:62185860-62185879 None:intergenic 35.0%
CAAAACAGTTCATGCATGTT+TGG - chr3_2:62185864-62185883 Msa0415770:intron 35.0%
TTCCAATCACAACCAATATC+AGG - chr3_2:62186028-62186047 Msa0415770:CDS 35.0%
ATTTGATGTCCTCCTGATAT+TGG + chr3_2:62186043-62186062 None:intergenic 35.0%
GTCCCTTAAGTTATGAATGT+TGG + chr3_2:62186397-62186416 None:intergenic 35.0%
TTTGAATCACACTCCTGTAA+TGG + chr3_2:62186892-62186911 None:intergenic 35.0%
ACAACTAATATGGGAACCAA+AGG + chr3_2:62187025-62187044 None:intergenic 35.0%
GACGAAGTTATGTCATATTG+TGG + chr3_2:62187080-62187099 None:intergenic 35.0%
TTTATTTATTGGTGAGGAGG+AGG - chr3_2:62187229-62187248 Msa0415770:intron 35.0%
ATTGAAATTGACAGAGCAAG+AGG + chr3_2:62187357-62187376 None:intergenic 35.0%
! GAGAAGAATGATGGAATGGA+AGG + chr3_2:62181117-62181136 None:intergenic 40.0%
! TGGAGAGAAGAATGATGGAA+TGG + chr3_2:62181121-62181140 None:intergenic 40.0%
TGAAGTGGAGAGAAGAATGA+TGG + chr3_2:62181126-62181145 None:intergenic 40.0%
!!! GGAAGACTAGTGTTTTGAAG+TGG + chr3_2:62181141-62181160 None:intergenic 40.0%
AGAGAGAGAGGAAGAAGATA+GGG + chr3_2:62181163-62181182 None:intergenic 40.0%
TAAAGAAGATGCCCTTGGAA+GGG - chr3_2:62181712-62181731 Msa0415770:intron 40.0%
ATGTGAAGAGAAAGATCAGG+TGG + chr3_2:62181771-62181790 None:intergenic 40.0%
! GGTTGTTGTTGATGTTGTTG+TGG + chr3_2:62181948-62181967 None:intergenic 40.0%
AGTGAGGAAAATGAGCTTGT+TGG + chr3_2:62181992-62182011 None:intergenic 40.0%
GTGTCATCAACATCATCAGA+AGG - chr3_2:62182116-62182135 Msa0415770:intron 40.0%
GAAGGGTTAAGACCAATCAA+AGG - chr3_2:62182134-62182153 Msa0415770:intron 40.0%
TAGACTGGAATCCCTTTGAT+TGG + chr3_2:62182149-62182168 None:intergenic 40.0%
CTGGTAAAAAGGGGAATGAA+CGG + chr3_2:62182178-62182197 None:intergenic 40.0%
TGTTCCATGGCTGGTAAAAA+GGG + chr3_2:62182188-62182207 None:intergenic 40.0%
ATGTTCCATGGCTGGTAAAA+AGG + chr3_2:62182189-62182208 None:intergenic 40.0%
! AGTGTGAGTGATGATGATGA+TGG + chr3_2:62182430-62182449 None:intergenic 40.0%
CATCATCATCACTCACACTA+TGG - chr3_2:62182431-62182450 Msa0415770:intron 40.0%
AAGCATCCATGATGAGATCA+AGG - chr3_2:62182477-62182496 Msa0415770:CDS 40.0%
! GCTCTCATGCTTCTTTTTGT+CGG + chr3_2:62182518-62182537 None:intergenic 40.0%
CAGCATGAACAAATCTAGCA+TGG + chr3_2:62182568-62182587 None:intergenic 40.0%
CTTGTGAGAGTGAGACTATT+AGG - chr3_2:62182804-62182823 Msa0415770:intron 40.0%
TGAGAGTGAGACTATTAGGT+GGG - chr3_2:62182808-62182827 Msa0415770:intron 40.0%
AGCAACACCAAAGTCAGTAT+TGG - chr3_2:62182934-62182953 Msa0415770:intron 40.0%
! ATTGGAACTGATGGATGTGA+AGG - chr3_2:62182952-62182971 Msa0415770:intron 40.0%
TGCACCACTTTCTTCTTCAT+TGG + chr3_2:62183075-62183094 None:intergenic 40.0%
GCAGTGAATGAATGAATGTG+TGG - chr3_2:62183092-62183111 Msa0415770:intron 40.0%
AATGAATGAATGTGTGGGAG+TGG - chr3_2:62183098-62183117 Msa0415770:intron 40.0%
GAGGATGATGTACCACAAAT+TGG - chr3_2:62183893-62183912 Msa0415770:intron 40.0%
GTACCACAAATTGGAAGCAA+TGG - chr3_2:62183902-62183921 Msa0415770:intron 40.0%
!! ATTACTCCATAGAGTGTTGG+TGG + chr3_2:62183999-62184018 None:intergenic 40.0%
!! AAAAAGAGTGTTGTGGACGT+GGG + chr3_2:62184191-62184210 None:intergenic 40.0%
!! AAAAAAGAGTGTTGTGGACG+TGG + chr3_2:62184192-62184211 None:intergenic 40.0%
!! ACCTTAGTGATTTGGTGGAT+TGG - chr3_2:62184305-62184324 Msa0415770:intron 40.0%
ACCAATCCACCAAATCACTA+AGG + chr3_2:62184309-62184328 None:intergenic 40.0%
!! AGCCTTAGGATTGGTTTAAG+TGG - chr3_2:62185673-62185692 Msa0415770:intron 40.0%
TGATCAGTAGTAGAGAACCA+TGG - chr3_2:62185960-62185979 Msa0415770:CDS 40.0%
! ATGTCGTTTGGACTTGTTTG+TGG + chr3_2:62185986-62186005 None:intergenic 40.0%
ACAAGTCCAAACGACATAGA+TGG - chr3_2:62185989-62186008 Msa0415770:CDS 40.0%
CTGAAACCATCTATGTCGTT+TGG + chr3_2:62185998-62186017 None:intergenic 40.0%
GGTTGTGATTGGAAGATAGT+TGG + chr3_2:62186022-62186041 None:intergenic 40.0%
! CTCCTGATATTGGTTGTGAT+TGG + chr3_2:62186033-62186052 None:intergenic 40.0%
CAATCACAACCAATATCAGG+AGG - chr3_2:62186031-62186050 Msa0415770:CDS 40.0%
ATCAGGAGGACATCAAATTC+AGG - chr3_2:62186045-62186064 Msa0415770:CDS 40.0%
CAGCTCAAGAACAATTTGTC+AGG - chr3_2:62186913-62186932 Msa0415770:five_prime_UTR 40.0%
CTAATGTGAACTCCAAGCTT+GGG + chr3_2:62186960-62186979 None:intergenic 40.0%
TCACATTAGGCATACCAGAT+TGG - chr3_2:62186971-62186990 Msa0415770:five_prime_UTR 40.0%
TTAGGCATACCAGATTGGAA+TGG - chr3_2:62186976-62186995 Msa0415770:five_prime_UTR 40.0%
ATACCAGATTGGAATGGCAA+AGG - chr3_2:62186982-62187001 Msa0415770:five_prime_UTR 40.0%
GCTGCATATGTAGAAGAACA+AGG - chr3_2:62187280-62187299 Msa0415770:five_prime_UTR 40.0%
CGTGAGTATCACACTTAACA+TGG - chr3_2:62187449-62187468 Msa0415770:five_prime_UTR 40.0%
ATGGATGCGACCTATGAAAT+TGG - chr3_2:62187468-62187487 Msa0415770:five_prime_UTR 40.0%
! GAATGATGGAATGGAAGGGA+AGG + chr3_2:62181112-62181131 None:intergenic 45.0%
GAGAGAGAGGAAGAAGATAG+GGG + chr3_2:62181162-62181181 None:intergenic 45.0%
GAGAGAGAGAGGAAGAAGAT+AGG + chr3_2:62181164-62181183 None:intergenic 45.0%
AGAGAGAAAGAGAGAGAGAG+AGG + chr3_2:62181175-62181194 None:intergenic 45.0%
CTAAAGAAGATGCCCTTGGA+AGG - chr3_2:62181711-62181730 Msa0415770:intron 45.0%
GCTCACACTGAACTATCTCT+TGG - chr3_2:62181891-62181910 Msa0415770:intron 45.0%
! ATTCCCCTTTTTACCAGCCA+TGG - chr3_2:62182181-62182200 Msa0415770:intron 45.0%
GTTCCATGGCTGGTAAAAAG+GGG + chr3_2:62182187-62182206 None:intergenic 45.0%
TCTCTTGAATGTTCCATGGC+TGG + chr3_2:62182197-62182216 None:intergenic 45.0%
ACGGAGTTGAATTAGGCATG+TGG + chr3_2:62182247-62182266 None:intergenic 45.0%
GAAGGAGACGGAGTTGAATT+AGG + chr3_2:62182254-62182273 None:intergenic 45.0%
GAAGATGACGAAGAAGGAGA+CGG + chr3_2:62182266-62182285 None:intergenic 45.0%
AGAGGTGAAGATGACGAAGA+AGG + chr3_2:62182272-62182291 None:intergenic 45.0%
! TTTAAACTCCAGTGGCTCTG+CGG - chr3_2:62182334-62182353 Msa0415770:intron 45.0%
ATTAAACCTTGTGGCTACGG+CGG + chr3_2:62182369-62182388 None:intergenic 45.0%
!! TGATGATGATGGTGGTGCAA+TGG + chr3_2:62182419-62182438 None:intergenic 45.0%
!! GTGAGTGATGATGATGATGG+TGG + chr3_2:62182427-62182446 None:intergenic 45.0%
GTACTTGTCCATCGCATTCT+TGG + chr3_2:62182542-62182561 None:intergenic 45.0%
GTTCATGCTGTTGAGCTTCT+TGG - chr3_2:62182578-62182597 Msa0415770:intron 45.0%
GTGAGAGTGAGACTATTAGG+TGG - chr3_2:62182807-62182826 Msa0415770:intron 45.0%
ATCAGAGACTGTGTCATGTC+TGG + chr3_2:62183184-62183203 None:intergenic 45.0%
GAATTACCTGAAGAAGCTGC+AGG + chr3_2:62183509-62183528 None:intergenic 45.0%
! GTTGGATTAGGCCTTTCAGA+TGG - chr3_2:62183863-62183882 Msa0415770:intron 45.0%
TTAGGCCTTTCAGATGGATC+TGG - chr3_2:62183869-62183888 Msa0415770:intron 45.0%
CCACCATTGCTTCCAATTTG+TGG + chr3_2:62183908-62183927 None:intergenic 45.0%
CCACAAATTGGAAGCAATGG+TGG - chr3_2:62183905-62183924 Msa0415770:intron 45.0%
ACTCATCCACCAACACTCTA+TGG - chr3_2:62183990-62184009 Msa0415770:intron 45.0%
ACCATGTGGTGAAATCCTTG+TGG - chr3_2:62184972-62184991 Msa0415770:intron 45.0%
ACCACAAGGATTTCACCACA+TGG + chr3_2:62184976-62184995 None:intergenic 45.0%
GATGGAAAATCACGACCACA+AGG + chr3_2:62184990-62185009 None:intergenic 45.0%
!! GTAAACATTAGTGGTGGTGG+AGG - chr3_2:62185521-62185540 Msa0415770:intron 45.0%
! TTTGGACTTGTTTGTGGCCA+TGG + chr3_2:62185980-62185999 None:intergenic 45.0%
AGAGTGTAAGAACCCAAGCT+TGG - chr3_2:62186945-62186964 Msa0415770:five_prime_UTR 45.0%
CCTAATGTGAACTCCAAGCT+TGG + chr3_2:62186961-62186980 None:intergenic 45.0%
CCAAGCTTGGAGTTCACATT+AGG - chr3_2:62186958-62186977 Msa0415770:five_prime_UTR 45.0%
TGTCCTTTGCCATTCCAATC+TGG + chr3_2:62186988-62187007 None:intergenic 45.0%
GACATAACTTCGTCATGCAG+AGG - chr3_2:62187086-62187105 Msa0415770:five_prime_UTR 45.0%
GTGTGATACTCACGAATAGC+AGG + chr3_2:62187443-62187462 None:intergenic 45.0%
!!! ATTAAATACAATTTTTTTTT+TGG + chr3_2:62186114-62186133 None:intergenic 5.0%
!!! AAAAAAATTGTATTTAATTT+AGG - chr3_2:62186116-62186135 Msa0415770:CDS 5.0%
!! TAGATATATAATATATAAAT+TGG - chr3_2:62187114-62187133 Msa0415770:five_prime_UTR 5.0%
!!! TGTATTTATTTTTTATTTAT+TGG - chr3_2:62187218-62187237 Msa0415770:intron 5.0%
TTTCCCCCTACATAGCTGCA+GGG - chr3_2:62182291-62182310 Msa0415770:intron 50.0%
AAACCCCCTGCAGCTATGTA+GGG + chr3_2:62182299-62182318 None:intergenic 50.0%
TAAACCCCCTGCAGCTATGT+AGG + chr3_2:62182300-62182319 None:intergenic 50.0%
! CACTCACACTATGGGAGTGT+TGG - chr3_2:62182440-62182459 Msa0415770:intron 50.0%
!! CACTATGGGAGTGTTGGACT+TGG - chr3_2:62182446-62182465 Msa0415770:intron 50.0%
!! TGAGAGCACCAAGAATGCGA+TGG - chr3_2:62182531-62182550 Msa0415770:CDS 50.0%
CATGCTGTTGAGCTTCTTGG+TGG - chr3_2:62182581-62182600 Msa0415770:intron 50.0%
GACAAACCTGCAGCTTCTTC+AGG - chr3_2:62183500-62183519 Msa0415770:intron 50.0%
CCTCTCCAGATCCATCTGAA+AGG + chr3_2:62183877-62183896 None:intergenic 50.0%
CCTTTCAGATGGATCTGGAG+AGG - chr3_2:62183874-62183893 Msa0415770:intron 50.0%
GCAGCTATGTAGGGGGAAAG+AGG + chr3_2:62182290-62182309 None:intergenic 55.0%
CTTTCCCCCTACATAGCTGC+AGG - chr3_2:62182290-62182309 Msa0415770:intron 55.0%
TTCCCCCTACATAGCTGCAG+GGG - chr3_2:62182292-62182311 Msa0415770:intron 55.0%
AACCCCCTGCAGCTATGTAG+GGG + chr3_2:62182298-62182317 None:intergenic 55.0%
TCTATAAGCCGCAGAGCCAC+TGG + chr3_2:62182345-62182364 None:intergenic 55.0%
TGGTGGAGGCTTACCATGCA+AGG - chr3_2:62185535-62185554 Msa0415770:CDS 55.0%
TCCCCCTACATAGCTGCAGG+GGG - chr3_2:62182293-62182312 Msa0415770:intron 60.0%
ACCCCCTGCAGCTATGTAGG+GGG + chr3_2:62182297-62182316 None:intergenic 60.0%
ATAGAGCCGCCGTAGCCACA+AGG - chr3_2:62182360-62182379 Msa0415770:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 62181048 62187493 62181048 ID=Msa0415770;Name=Msa0415770
chr3_2 mRNA 62181048 62187493 62181048 ID=Msa0415770-mRNA-1;Parent=Msa0415770;Name=Msa0415770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=646|0.83|0.85|1|0.83|0.71|7|479|461
chr3_2 exon 62181048 62181643 62181048 ID=Msa0415770-mRNA-1:exon:13351;Parent=Msa0415770-mRNA-1
chr3_2 exon 62182475 62182574 62182475 ID=Msa0415770-mRNA-1:exon:13350;Parent=Msa0415770-mRNA-1
chr3_2 exon 62184515 62184668 62184515 ID=Msa0415770-mRNA-1:exon:13349;Parent=Msa0415770-mRNA-1
chr3_2 exon 62185020 62185065 62185020 ID=Msa0415770-mRNA-1:exon:13348;Parent=Msa0415770-mRNA-1
chr3_2 exon 62185532 62185608 62185532 ID=Msa0415770-mRNA-1:exon:13347;Parent=Msa0415770-mRNA-1
chr3_2 exon 62185930 62187220 62185930 ID=Msa0415770-mRNA-1:exon:13346;Parent=Msa0415770-mRNA-1
chr3_2 exon 62187247 62187493 62187247 ID=Msa0415770-mRNA-1:exon:13345;Parent=Msa0415770-mRNA-1
chr3_2 five_prime_UTR 62187247 62187493 62187247 ID=Msa0415770-mRNA-1:five_prime_utr;Parent=Msa0415770-mRNA-1
chr3_2 five_prime_UTR 62186822 62187220 62186822 ID=Msa0415770-mRNA-1:five_prime_utr;Parent=Msa0415770-mRNA-1
chr3_2 CDS 62185930 62186821 62185930 ID=Msa0415770-mRNA-1:cds;Parent=Msa0415770-mRNA-1
chr3_2 CDS 62185532 62185608 62185532 ID=Msa0415770-mRNA-1:cds;Parent=Msa0415770-mRNA-1
chr3_2 CDS 62185020 62185065 62185020 ID=Msa0415770-mRNA-1:cds;Parent=Msa0415770-mRNA-1
chr3_2 CDS 62184515 62184668 62184515 ID=Msa0415770-mRNA-1:cds;Parent=Msa0415770-mRNA-1
chr3_2 CDS 62182475 62182574 62182475 ID=Msa0415770-mRNA-1:cds;Parent=Msa0415770-mRNA-1
chr3_2 CDS 62181527 62181643 62181527 ID=Msa0415770-mRNA-1:cds;Parent=Msa0415770-mRNA-1
chr3_2 three_prime_UTR 62181048 62181526 62181048 ID=Msa0415770-mRNA-1:three_prime_utr;Parent=Msa0415770-mRNA-1
Gene Sequence

>Msa0415770

ATGCCCTTGGAAGGGATTTTCATTGAACCAATTTCAACATCAACAACACCACCTGATCTTTCTCTTCACATAAGTCCACCAAGTACTTCTAATTCTTCTTTGATTAACACAACTCAACCATCCAATTATGAACCTCATAATTCTTCAAGAACAACTTTGGCTCAAGCTCAAGCTCACACTGAACTATCTCTTGGAAGAAATTTTAGTTGTGGTGCTCAAGAACAACCACAACAACATCAACAACAACCACATAACCCTTATTATCAAAACCAACAAGCTCATTTTCCTCACTTTCAACATCACAACAATCACAGCTCTACAACAACAACAACAAGTACTACAACAAATTCTTCAAGTCACATGAATCACATAAATTATGGTGTTTCATTGCTTGATGTGTCATCAACATCATCAGAAGGGTTAAGACCAATCAAAGGGATTCCAGTCTATCATAACCGTTCATTCCCCTTTTTACCAGCCATGGAACATTCAAGAGAAAAAGATCCAAAGATGTGTTTATATCACCACATGCCTAATTCAACTCCGTCTCCTTCTTCGTCATCTTCACCTCTTTCCCCCTACATAGCTGCAGGGGGTTTAGATCCCATGTCGTTTTTAAACTCCAGTGGCTCTGCGGCTTATAGAGCCGCCGTAGCCACAAGGTTTAATAACGAACCTTTCAAATCTCATCAATATCCATTGCACCACCATCATCATCATCACTCACACTATGGGAGTGTTGGACTTGGTAGCTCAGAAGCATCCATGATGAGATCAAGGTTTTTGCCTAAATTGCCGACAAAAAGAAGCATGAGAGCACCAAGAATGCGATGGACAAGTACACTCCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCAACACCAAAGTCAGTATTGGAACTGATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGTCATTTGCAGATGTATCGAACTGTTAAGACAACTGACAAACCTGCAGCTTCTTCAGGCCTTTCAGATGGATCTGGAGAGGATGATGTACCACAAATTGGAAGCAATGGTGGAATTCGTCAATTTTCAGATCAAAGAGGGCTAACAGATAGACCAATACAGCAAGATATGGATTACTCATCCACCAACACTCTATGGAGTAATTCTTCAAGTAGTAGAGAACCATGGCCACAAACAAGTCCAAACGACATAGATGGTTTCAGACCAACTATCTTCCAATCACAACCAATATCAGGAGGACATCAAATTCAGGAGTGTGATTCAAATCAGCTCAAGAACAATTTGTCAGGATCTAATTTAGAGTGTAAGAACCCAAGCTTGGAGTTCACATTAGGCATACCAGATTGGAATGGCAAAGGACAAGCTTAA
Protein sequence

>Msa0415770

MPLEGIFIEPISTSTTPPDLSLHISPPSTSNSSLINTTQPSNYEPHNSSRTTLAQAQAHTELSLGRNFSCGAQEQPQQHQQQPHNPYYQNQQAHFPHFQHHNNHSSTTTTTSTTTNSSSHMNHINYGVSLLDVSSTSSEGLRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSTPSPSSSSSPLSPYIAAGGLDPMSFLNSSGSAAYRAAVATRFNNEPFKSHQYPLHHHHHHHSHYGSVGLGSSEASMMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDVPQIGSNGGIRQFSDQRGLTDRPIQQDMDYSSTNTLWSNSSSSREPWPQTSPNDIDGFRPTIFQSQPISGGHQIQECDSNQLKNNLSGSNLECKNPSLEFTLGIPDWNGKGQA*