AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0460500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460500 MtrunA17_Chr3g0109981 97.425 466 3 5 1 461 1 462 0.0 908
Msa0460500 MtrunA17_Chr8g0366281 48.837 215 71 6 257 451 157 352 1.90e-52 180
Msa0460500 MtrunA17_Chr6g0479431 35.666 443 194 16 18 451 7 367 6.78e-50 174
Msa0460500 MtrunA17_Chr5g0410741 50.000 222 67 8 255 453 201 401 5.02e-48 170
Msa0460500 MtrunA17_Chr1g0154261 47.179 195 74 5 267 461 120 285 1.44e-41 149
Msa0460500 MtrunA17_Chr7g0243081 64.179 67 23 1 266 332 65 130 2.61e-21 95.1
Msa0460500 MtrunA17_Chr1g0162931 65.517 58 20 0 272 329 17 74 1.72e-20 91.3
Msa0460500 MtrunA17_Chr1g0210911 63.793 58 21 0 272 329 21 78 5.42e-20 90.9
Msa0460500 MtrunA17_Chr2g0320231 68.966 58 18 0 272 329 96 153 1.86e-19 89.7
Msa0460500 MtrunA17_Chr1g0190301 43.860 114 48 3 253 352 143 254 2.23e-19 89.7
Msa0460500 MtrunA17_Chr8g0379121 67.241 58 19 0 272 329 110 167 6.14e-19 89.0
Msa0460500 MtrunA17_Chr7g0258551 48.837 86 41 2 275 359 214 297 2.99e-18 86.3
Msa0460500 MtrunA17_Chr7g0261911 50.000 86 43 0 274 359 263 348 4.30e-18 86.7
Msa0460500 MtrunA17_Chr2g0288601 66.038 53 18 0 272 324 70 122 8.05e-17 76.6
Msa0460500 MtrunA17_Chr3g0095611 58.929 56 23 0 274 329 20 75 1.12e-16 78.6
Msa0460500 MtrunA17_Chr1g0175091 57.377 61 26 0 275 335 260 320 3.10e-16 80.5
Msa0460500 MtrunA17_Chr5g0409731 67.925 53 17 0 274 326 26 78 3.11e-16 79.0
Msa0460500 MtrunA17_Chr7g0274471 64.286 56 20 0 274 329 219 274 3.23e-16 80.5
Msa0460500 MtrunA17_Chr2g0283951 58.462 65 23 1 272 332 88 152 8.90e-16 79.0
Msa0460500 MtrunA17_Chr7g0254981 63.636 55 20 0 275 329 52 106 1.27e-15 77.0
Msa0460500 MtrunA17_Chr1g0197171 54.930 71 31 1 274 344 45 114 1.37e-15 77.4
Msa0460500 MtrunA17_Chr2g0290991 54.286 70 31 1 274 343 40 108 1.49e-15 77.4
Msa0460500 MtrunA17_Chr8g0356501 51.429 70 34 0 274 343 38 107 2.14e-15 77.4
Msa0460500 MtrunA17_Chr2g0291021 63.636 55 20 0 275 329 51 105 3.99e-15 76.3
Msa0460500 MtrunA17_Chr2g0310011 51.429 70 34 0 274 343 36 105 4.00e-15 76.6
Msa0460500 MtrunA17_Chr2g0321461 58.929 56 23 0 274 329 46 101 7.89e-15 75.9
Msa0460500 MtrunA17_Chr6g0461641 54.237 59 27 0 274 332 43 101 3.84e-14 73.9
Msa0460500 MtrunA17_Chr5g0417521 52.632 57 27 0 274 330 16 72 4.91e-14 73.2
Msa0460500 MtrunA17_Chr4g0042451 54.386 57 26 0 274 330 18 74 1.38e-13 71.6
Msa0460500 MtrunA17_Chr1g0175081 49.180 61 31 0 275 335 24 84 2.30e-13 66.2
Msa0460500 MtrunA17_Chr1g0175071 37.615 109 52 3 275 367 179 287 8.41e-13 69.3
Msa0460500 MtrunA17_Chr7g0242521 55.172 58 23 1 275 329 15 72 5.11e-12 65.9
Msa0460500 MtrunA17_Chr4g0062921 48.529 68 35 0 272 339 234 301 1.26e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460500 AT5G16560.1 40.122 491 173 17 1 458 1 403 1.07e-80 256
Msa0460500 AT1G32240.2 59.627 161 41 4 233 389 186 326 1.60e-49 173
Msa0460500 AT1G32240.1 57.225 173 48 5 223 389 174 326 4.08e-49 172
Msa0460500 AT4G17695.1 34.000 350 131 13 113 454 62 319 7.53e-40 146
Msa0460500 AT5G42630.2 72.727 88 24 0 268 355 100 187 2.99e-36 133
Msa0460500 AT5G42630.1 72.727 88 24 0 268 355 100 187 1.17e-35 133
Msa0460500 AT2G38300.1 33.838 198 100 6 253 447 38 207 1.24e-21 96.3
Msa0460500 AT2G40260.1 33.047 233 111 7 235 461 62 255 4.67e-20 92.4
Msa0460500 AT4G04605.1 67.241 58 19 0 272 329 13 70 4.92e-20 89.0
Msa0460500 AT2G02060.2 65.625 64 20 1 273 334 29 92 9.82e-20 89.0
Msa0460500 AT2G02060.1 65.625 64 20 1 273 334 29 92 9.82e-20 89.0
Msa0460500 AT1G14600.1 66.102 59 20 0 273 331 23 81 2.12e-19 88.2
Msa0460500 AT4G04580.1 59.322 59 24 0 274 332 15 73 3.29e-18 82.4
Msa0460500 AT2G42660.1 66.071 56 19 0 274 329 51 106 1.36e-17 82.8
Msa0460500 AT4G04555.1 58.621 58 24 0 272 329 13 70 1.82e-17 78.2
Msa0460500 AT5G45580.2 54.430 79 26 2 248 326 8 76 2.44e-17 82.4
Msa0460500 AT5G45580.1 67.925 53 17 0 274 326 8 60 4.53e-17 81.3
Msa0460500 AT4G28610.1 58.730 63 26 0 275 337 227 289 5.54e-16 80.1
Msa0460500 AT2G01060.1 63.636 55 20 0 275 329 17 71 2.84e-15 76.6
Msa0460500 AT3G12730.1 60.714 56 22 0 274 329 24 79 3.39e-15 75.5
Msa0460500 AT1G32240.3 54.651 86 28 3 308 389 1 79 4.40e-15 72.8
Msa0460500 AT3G04450.3 55.714 70 30 1 261 329 225 294 5.85e-15 75.9
Msa0460500 AT5G29000.4 55.385 65 29 0 275 339 233 297 7.23e-15 75.9
Msa0460500 AT4G13640.2 62.264 53 20 0 274 326 38 90 7.71e-15 75.5
Msa0460500 AT4G13640.1 62.264 53 20 0 274 326 38 90 7.87e-15 75.5
Msa0460500 AT1G79430.2 50.704 71 35 0 274 344 35 105 9.10e-15 75.9
Msa0460500 AT5G29000.1 63.636 55 20 0 275 329 190 244 1.03e-14 75.9
Msa0460500 AT5G29000.3 63.636 55 20 0 275 329 190 244 1.03e-14 75.9
Msa0460500 AT3G04450.1 55.714 70 30 1 261 329 225 294 1.20e-14 76.3
Msa0460500 AT3G04450.4 55.714 70 30 1 261 329 185 254 1.32e-14 75.9
Msa0460500 AT3G04450.2 55.714 70 30 1 261 329 185 254 1.32e-14 75.9
Msa0460500 AT3G24120.2 55.000 60 27 0 274 333 42 101 1.39e-14 74.7
Msa0460500 AT3G24120.1 55.000 60 27 0 274 333 42 101 1.41e-14 74.7
Msa0460500 AT5G29000.2 63.636 55 20 0 275 329 233 287 1.51e-14 75.9
Msa0460500 AT5G18240.2 52.308 65 31 0 274 338 46 110 1.80e-14 75.5
Msa0460500 AT5G18240.3 52.308 65 31 0 274 338 46 110 1.80e-14 75.5
Msa0460500 AT5G06800.3 56.364 55 24 0 275 329 194 248 1.86e-14 73.9
Msa0460500 AT5G18240.5 52.308 65 31 0 274 338 46 110 1.92e-14 75.5
Msa0460500 AT5G18240.1 52.308 65 31 0 274 338 46 110 1.94e-14 75.5
Msa0460500 AT5G18240.4 52.308 65 31 0 274 338 46 110 1.94e-14 75.5
Msa0460500 AT3G04030.1 49.231 65 33 0 274 338 46 110 3.88e-14 74.3
Msa0460500 AT5G06800.1 40.698 86 48 2 275 359 194 277 3.97e-14 74.3
Msa0460500 AT5G06800.2 37.079 89 52 1 275 359 194 282 4.40e-14 73.9
Msa0460500 AT3G04030.3 49.231 65 33 0 274 338 46 110 4.47e-14 74.3
Msa0460500 AT2G20400.1 57.812 64 27 0 275 338 233 296 5.40e-14 73.9
Msa0460500 AT2G20400.2 57.143 63 27 0 275 337 233 295 9.24e-14 73.2
Msa0460500 AT3G13040.3 61.818 55 21 0 275 329 243 297 2.52e-13 72.0
Msa0460500 AT3G13040.1 61.818 55 21 0 275 329 243 297 2.52e-13 72.0
Msa0460500 AT3G13040.2 61.818 55 21 0 275 329 243 297 2.52e-13 72.0
Msa0460500 AT2G06020.1 47.436 78 40 1 249 326 63 139 2.92e-13 70.9
Msa0460500 AT1G69580.1 50.877 57 28 0 274 330 35 91 3.13e-12 68.2
Msa0460500 AT2G03500.1 45.652 92 44 2 267 358 227 312 3.22e-12 68.6
Msa0460500 AT1G69580.2 50.877 57 28 0 274 330 35 91 3.42e-12 67.8
Msa0460500 AT3G04030.2 47.692 65 33 1 274 338 46 109 1.05e-11 67.0
Msa0460500 AT1G68670.1 43.678 87 47 1 272 358 214 298 2.16e-11 65.5
Msa0460500 AT5G58080.1 37.405 131 68 6 272 390 193 321 4.63e-11 65.5

Find 131 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCCATGGCTGGTAAAA+AGG 0.206571 3_3:-57916204 None:intergenic
GTTCATGCTGTTGAGCTTCT+TGG 0.223702 3_3:+57916596 Msa0460500:CDS
AGTAATAGAGACAACTAATA+TGG 0.235620 3_3:-57920557 None:intergenic
GTACTTGTCCATCGCATTCT+TGG 0.279145 3_3:-57916557 None:intergenic
ACACTTAAAATGAGATAATT+AGG 0.281898 3_3:+57920985 Msa0460500:three_prime_UTR
AGGGCATCTTCTTTAGAAAA+AGG 0.292586 3_3:-57915722 None:intergenic
AGAATTATGAGGTTCATAAT+TGG 0.296903 3_3:-57915859 None:intergenic
CACATGAATCACATAAATTA+TGG 0.301972 3_3:+57916095 Msa0460500:CDS
AACTAACCTTTGATAATATA+TGG 0.305714 3_3:-57915696 None:intergenic
TAGATATATAATATATAAAT+TGG 0.318867 3_3:+57920639 Msa0460500:three_prime_UTR
GAGAGAGAGAGGAAGAAGAT+AGG 0.319296 3_3:-57915227 None:intergenic
AGTCCTTAATATTGTGTTTG+AGG 0.320622 3_3:+57915539 Msa0460500:five_prime_UTR
CATCATCATCACTCACACTA+TGG 0.323012 3_3:+57916449 Msa0460500:CDS
AGAGAGAGAGGAAGAAGATA+GGG 0.328501 3_3:-57915226 None:intergenic
ATAAGAACTAAGTAAGAATA+TGG 0.342340 3_3:-57920934 None:intergenic
GAAGGAGACGGAGTTGAATT+AGG 0.345696 3_3:-57916269 None:intergenic
GGTGTTGTTGATGTTGAAAT+TGG 0.348173 3_3:-57915765 None:intergenic
GAGGATGATGTACCACAAAT+TGG 0.348731 3_3:+57917901 Msa0460500:CDS
AGTCCTCAAACACAATATTA+AGG 0.351081 3_3:-57915542 None:intergenic
CAAGCTTAATTAATTTCCTT+TGG 0.362356 3_3:+57920531 Msa0460500:exon
ACTCATCCACCAACACTCTA+TGG 0.365181 3_3:+57917998 Msa0460500:CDS
ATTTGATGTCCTCCTGATAT+TGG 0.366341 3_3:-57920180 None:intergenic
GACAAACCTGCAGCTTCTTC+AGG 0.367603 3_3:+57917508 Msa0460500:CDS
CCACCATTGCTTCCAATTTG+TGG 0.370237 3_3:-57917913 None:intergenic
TGGTGATATAAACACATCTT+TGG 0.387535 3_3:-57916242 None:intergenic
CCAAGCTTGGAGTTCACATT+AGG 0.389593 3_3:+57920483 Msa0460500:CDS
TGTCCTTTGCCATTCCAATC+TGG 0.391114 3_3:-57920510 None:intergenic
TTTGGACTTGTTTGTGGCCA+TGG 0.402795 3_3:-57920117 None:intergenic
TTCCAATCACAACCAATATC+AGG 0.403005 3_3:+57920168 Msa0460500:CDS
ATCAGGAGGACATCAAATTC+AGG 0.406345 3_3:+57920185 Msa0460500:CDS
TAATCCATATCTTGCTGTAT+TGG 0.413141 3_3:-57917976 None:intergenic
TCTCTTGAATGTTCCATGGC+TGG 0.423245 3_3:-57916212 None:intergenic
CTCCTGATATTGGTTGTGAT+TGG 0.426736 3_3:-57920170 None:intergenic
CAAAGTCAAGAGAAAGAAGA+AGG 0.430708 3_3:-57915276 None:intergenic
AATTACTTCTGAAATTATGT+AGG 0.431842 3_3:-57920683 None:intergenic
TAATTCTTCAAGAACAACTT+TGG 0.432310 3_3:+57915875 Msa0460500:CDS
TAGACTGGAATCCCTTTGAT+TGG 0.435250 3_3:-57916164 None:intergenic
TCGACCAATACAGCAAGATA+TGG 0.437170 3_3:+57917972 Msa0460500:CDS
ATCAGTTCCAATACTGACTT+TGG 0.438924 3_3:-57916959 None:intergenic
CTCTATGGAGTAATTCTTCA+AGG 0.442637 3_3:+57918013 Msa0460500:CDS
CTGAAACCATCTATGTCGTT+TGG 0.446505 3_3:-57920135 None:intergenic
TTAGGCCTTTCAGATGGATC+TGG 0.451188 3_3:+57917877 Msa0460500:intron
TCACATTAGGCATACCAGAT+TGG 0.452124 3_3:+57920496 Msa0460500:CDS
GTTATTAAACCTTGTGGCTA+CGG 0.456769 3_3:-57916387 None:intergenic
ACAAGTCCAAACGACATAGA+TGG 0.458406 3_3:+57920129 Msa0460500:CDS
ATGTCGTTTGGACTTGTTTG+TGG 0.463624 3_3:-57920123 None:intergenic
CACTCACACTATGGGAGTGT+TGG 0.469128 3_3:+57916458 Msa0460500:CDS
CAGCTCAAGAACAATTTGTC+AGG 0.473778 3_3:+57920438 Msa0460500:CDS
ATTACTTCTGAAATTATGTA+GGG 0.474169 3_3:-57920682 None:intergenic
TGAAGTGGAGAGAAGAATGA+TGG 0.475084 3_3:-57915189 None:intergenic
GAGAGAGAGGAAGAAGATAG+GGG 0.480199 3_3:-57915225 None:intergenic
ATACAATACATACCTGCAAA+TGG 0.483907 3_3:-57917018 None:intergenic
GCTCACACTGAACTATCTCT+TGG 0.484804 3_3:+57915909 Msa0460500:CDS
CCTAATGTGAACTCCAAGCT+TGG 0.485539 3_3:-57920483 None:intergenic
GGTTGTGATTGGAAGATAGT+TGG 0.486453 3_3:-57920159 None:intergenic
CATGCTGTTGAGCTTCTTGG+TGG 0.491060 3_3:+57916599 Msa0460500:CDS
AGAGGTGAAGATGACGAAGA+AGG 0.493765 3_3:-57916287 None:intergenic
GGAGGAGGTATTTATTTACA+AGG 0.495798 3_3:+57920771 Msa0460500:three_prime_UTR
TTTATTTATTGGTGAGGAGG+AGG 0.496472 3_3:+57920756 Msa0460500:three_prime_UTR
TCTATAAGCCGCAGAGCCAC+TGG 0.501461 3_3:-57916360 None:intergenic
ATTGAAATTGATAGAGCAAG+AGG 0.502598 3_3:-57920881 None:intergenic
GTTGTTCTTGAAGAATTATG+AGG 0.504302 3_3:-57915870 None:intergenic
CTAATGTGAACTCCAAGCTT+GGG 0.507483 3_3:-57920482 None:intergenic
AAAGAAGAATTAGAAGTACT+TGG 0.514145 3_3:-57915816 None:intergenic
AGCTTTCCAGATTCTTTCCA+AGG 0.514638 3_3:+57915466 Msa0460500:five_prime_UTR
TTGTAACCATATATTATCAA+AGG 0.515599 3_3:+57915690 Msa0460500:five_prime_UTR
AAAGTCAGTATTGGAACTGA+TGG 0.515750 3_3:+57916961 Msa0460500:CDS
TTCAATGAAAATCCCTTCCA+AGG 0.520306 3_3:-57915742 None:intergenic
AGCAACACCAAAGTCAGTAT+TGG 0.520531 3_3:+57916952 Msa0460500:CDS
GTAATAGAGACAACTAATAT+GGG 0.520741 3_3:-57920556 None:intergenic
AAGCATCCATGATGAGATCA+AGG 0.522822 3_3:+57916495 Msa0460500:CDS
CTAAAGAAGATGCCCTTGGA+AGG 0.522865 3_3:+57915729 Msa0460500:exon
CTTATATGAAGAGAAAGATC+AGG 0.531476 3_3:-57915789 None:intergenic
CACTATGGGAGTGTTGGACT+TGG 0.532107 3_3:+57916464 Msa0460500:CDS
TGGAGAGAAGAATGATGGAA+TGG 0.532783 3_3:-57915184 None:intergenic
GAGAAGAATGATGGAATGGA+AGG 0.535420 3_3:-57915180 None:intergenic
GACGAAGTTGTGTCATATTG+TGG 0.535926 3_3:-57920602 None:intergenic
AGTGAGGAAAATGAGCTTGT+TGG 0.536485 3_3:-57916007 None:intergenic
ATTACTCCATAGAGTGTTGG+TGG 0.540356 3_3:-57918004 None:intergenic
GTGTGATACTCACGAATGGC+AGG 0.541294 3_3:-57920966 None:intergenic
CCACAAATTGGAAGCAATGG+TGG 0.541302 3_3:+57917913 Msa0460500:CDS
GGTTGTTGTTGATGTTGTTG+TGG 0.543246 3_3:-57915963 None:intergenic
GAAGAATTAGAAGTACTTGG+AGG 0.543694 3_3:-57915813 None:intergenic
AATGAACGGTTATGATAGAC+TGG 0.547430 3_3:-57916179 None:intergenic
ATCATCATCACTCACACTAT+GGG 0.548466 3_3:+57916450 Msa0460500:CDS
AAGGGTTAAGACCAATCAAA+GGG 0.548805 3_3:+57916153 Msa0460500:CDS
TAATATATAAATTGGTGTGA+AGG 0.552524 3_3:+57920647 Msa0460500:three_prime_UTR
AGAGTGTAAGAACCCAAGCT+TGG 0.553018 3_3:+57920470 Msa0460500:CDS
GAATGATGGAATGGAAGGGA+AGG 0.554334 3_3:-57915175 None:intergenic
TGATGATGATGGTGGTGCAA+TGG 0.555394 3_3:-57916434 None:intergenic
TTATGAGGTTCATAATTGGA+TGG 0.559155 3_3:-57915855 None:intergenic
GGAAAAGAAATATTCCAGAA+AGG 0.559752 3_3:-57915123 None:intergenic
GAAGGGTTAAGACCAATCAA+AGG 0.563565 3_3:+57916152 Msa0460500:CDS
TAAAGAAGATGCCCTTGGAA+GGG 0.566491 3_3:+57915730 Msa0460500:exon
GTTGGATTAGGCCTTTCAGA+TGG 0.566808 3_3:+57917871 Msa0460500:intron
GAATTACCTGAAGAAGCTGC+AGG 0.569581 3_3:-57917514 None:intergenic
AAAGTCAAGAGAAAGAAGAA+GGG 0.571326 3_3:-57915275 None:intergenic
AGGTTCGTTATTAAACCTTG+TGG 0.572358 3_3:-57916393 None:intergenic
GTGTCATCAACATCATCAGA+AGG 0.572682 3_3:+57916134 Msa0460500:CDS
ACAAGAACCAAATTCATATG+TGG 0.576249 3_3:-57921017 None:intergenic
GGATATTGATGAGATTTGAA+AGG 0.577391 3_3:-57916413 None:intergenic
AGAATTACTCCATAGAGTGT+TGG 0.593216 3_3:-57918007 None:intergenic
ACAACTAATATGGGAACCAA+AGG 0.597571 3_3:-57920547 None:intergenic
GAAGATGACGAAGAAGGAGA+CGG 0.598612 3_3:-57916281 None:intergenic
CAGCATGAACAAATCTAGCA+TGG 0.601911 3_3:-57916583 None:intergenic
ATTAAACCTTGTGGCTACGG+CGG 0.603335 3_3:-57916384 None:intergenic
AAGTGCAATATTCACAAGCA+AGG 0.606675 3_3:-57915595 None:intergenic
AGAAGAATGATGGAATGGAA+GGG 0.611147 3_3:-57915179 None:intergenic
TATTCAAAAGCTATAGCACA+AGG 0.614588 3_3:+57915399 Msa0460500:five_prime_UTR
GTACCACAAATTGGAAGCAA+TGG 0.620505 3_3:+57917910 Msa0460500:CDS
ATACCAGATTGGAATGGCAA+AGG 0.624282 3_3:+57920507 Msa0460500:CDS
TGAGAGCACCAAGAATGCGA+TGG 0.625062 3_3:+57916549 Msa0460500:CDS
CCTCTCCAGATCCATCTGAA+AGG 0.630610 3_3:-57917882 None:intergenic
TTGTTGTGATGTTGAAAGTG+AGG 0.638425 3_3:-57916023 None:intergenic
TCAATGAAAATCCCTTCCAA+GGG 0.641425 3_3:-57915741 None:intergenic
TGTCATCAACATCATCAGAA+GGG 0.646503 3_3:+57916135 Msa0460500:CDS
ATTGGAACTGATGGATGTGA+AGG 0.646666 3_3:+57916970 Msa0460500:CDS
TTAAGTGTGATACTCACGAA+TGG 0.647640 3_3:-57920970 None:intergenic
TTTAAACTCCAGTGGCTCTG+CGG 0.648557 3_3:+57916352 Msa0460500:CDS
CCTTTCAGATGGATCTGGAG+AGG 0.652978 3_3:+57917882 Msa0460500:CDS
TTAGGCATACCAGATTGGAA+TGG 0.661276 3_3:+57920501 Msa0460500:CDS
ATAGAGCCGCCGTAGCCACA+AGG 0.664238 3_3:+57916378 Msa0460500:CDS
GACACAACTTCGTCATGCAG+AGG 0.665460 3_3:+57920611 Msa0460500:three_prime_UTR
GTGAGTGATGATGATGATGG+TGG 0.675410 3_3:-57916442 None:intergenic
ATATGAAGAGAAAGATCAGG+TGG 0.676710 3_3:-57915786 None:intergenic
GCTGCATATGTAGAAGAACA+AGG 0.676730 3_3:+57920807 Msa0460500:three_prime_UTR
AAAATGAGATAATTAGGACA+TGG 0.689846 3_3:+57920991 Msa0460500:three_prime_UTR
ACGGAGTTGAATTAGGCATG+TGG 0.690652 3_3:-57916262 None:intergenic
CAATCACAACCAATATCAGG+AGG 0.694629 3_3:+57920171 Msa0460500:CDS
AGTGTGAGTGATGATGATGA+TGG 0.709391 3_3:-57916445 None:intergenic
TGATCAGTAGTAGAGAACCA+TGG 0.715843 3_3:+57920100 Msa0460500:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTAATAAATTTATTTT+TGG + chr3_3:57917831-57917850 Msa0460500:intron 0.0%
!! ATTAAAATCAGATTAAAAAA+AGG - chr3_3:57915626-57915645 None:intergenic 10.0%
!!! TTTTAATCTGATTTTAATAA+AGG + chr3_3:57915628-57915647 Msa0460500:five_prime_UTR 10.0%
!!! TTTTCTTCTTTTAAATTTTT+TGG + chr3_3:57916656-57916675 Msa0460500:intron 10.0%
!! ATATATAAAAAATTTAAGCA+AGG - chr3_3:57917771-57917790 None:intergenic 10.0%
!!! TTTTTTATGAAGAATAAAAA+GGG + chr3_3:57918214-57918233 Msa0460500:intron 10.0%
!! CTTCAAATTAATTAAAATTT+AGG - chr3_3:57919203-57919222 None:intergenic 10.0%
!!! AATATTATTTTTCCAATAAT+TGG - chr3_3:57919865-57919884 None:intergenic 10.0%
!!! AACTAATTTGTATAATTTAA+GGG - chr3_3:57920346-57920365 None:intergenic 10.0%
!!! AAACTAATTTGTATAATTTA+AGG - chr3_3:57920347-57920366 None:intergenic 10.0%
!!! AATAATTGTTTTAAGAAGAA+AGG - chr3_3:57915153-57915172 None:intergenic 15.0%
!! TTAGAAGAAAAAAAAAAGAT+TGG - chr3_3:57915364-57915383 None:intergenic 15.0%
!! TTAAAAGAAGAAAATTAAAG+TGG - chr3_3:57916650-57916669 None:intergenic 15.0%
!!! TCTTTTAAATTTTTTGGATA+CGG + chr3_3:57916662-57916681 Msa0460500:intron 15.0%
!! ATATGAAATTGAAATGAAAT+TGG + chr3_3:57917054-57917073 Msa0460500:intron 15.0%
!! TATGAAATTGAAATGAAATT+GGG + chr3_3:57917055-57917074 Msa0460500:intron 15.0%
!! ATATCTTATTCAATACAAAT+AGG + chr3_3:57917350-57917369 Msa0460500:intron 15.0%
!! GTAATTATTAGACTAATTAA+GGG - chr3_3:57917568-57917587 None:intergenic 15.0%
!!! CTTAATTAGTCTAATAATTA+CGG + chr3_3:57917567-57917586 Msa0460500:intron 15.0%
!! AAAAAAATGTGAAAAGAATA+AGG - chr3_3:57917653-57917672 None:intergenic 15.0%
!! GAGTAATTATAAATTAATGT+TGG + chr3_3:57917853-57917872 Msa0460500:intron 15.0%
!! TTATAAATTAATGTTGGATT+AGG + chr3_3:57917859-57917878 Msa0460500:intron 15.0%
!!! CTTTTTTATGAAGAATAAAA+AGG + chr3_3:57918213-57918232 Msa0460500:intron 15.0%
!!! ATTTGGGTTTTTTTTTTTTT+TGG - chr3_3:57918578-57918597 None:intergenic 15.0%
!! AATAAATTGTTAATGTTACT+TGG - chr3_3:57918642-57918661 None:intergenic 15.0%
!! GTAACATATAAATTTAGAAA+TGG + chr3_3:57918844-57918863 Msa0460500:intron 15.0%
!!! AAGTGAAAATTTTAGTAAAA+GGG - chr3_3:57919006-57919025 None:intergenic 15.0%
!!! TAAGTGAAAATTTTAGTAAA+AGG - chr3_3:57919007-57919026 None:intergenic 15.0%
!! TATCAAAAACAAAATAAAGA+AGG - chr3_3:57919237-57919256 None:intergenic 15.0%
!! AAATATCTTGATTACTATAA+AGG - chr3_3:57919385-57919404 None:intergenic 15.0%
!!! AAGATATTTTAAAAATTGAG+AGG + chr3_3:57919396-57919415 Msa0460500:intron 15.0%
!! TGAAAAAAGTTTATAAATTC+TGG + chr3_3:57919909-57919928 Msa0460500:intron 15.0%
!! GAAACCTAAAATTAATTTAA+GGG - chr3_3:57920300-57920319 None:intergenic 15.0%
!! TGAAACCTAAAATTAATTTA+AGG - chr3_3:57920301-57920320 None:intergenic 15.0%
!!! TTATTTTTTATTTATTGGTG+AGG + chr3_3:57920750-57920769 Msa0460500:three_prime_UTR 15.0%
!! TTGTAACCATATATTATCAA+AGG + chr3_3:57915690-57915709 Msa0460500:five_prime_UTR 20.0%
!!! AACTAACCTTTGATAATATA+TGG - chr3_3:57915699-57915718 None:intergenic 20.0%
!! AATCTAATACAGTTGTAAAA+TGG - chr3_3:57916700-57916719 None:intergenic 20.0%
!!! ATTGTTGTTGTTATTATGTT+TGG + chr3_3:57916879-57916898 Msa0460500:intron 20.0%
!!! TATGTTTGGTGTTATATTAT+AGG + chr3_3:57916893-57916912 Msa0460500:intron 20.0%
!!! TAATTTAGATGGTGAATTTT+AGG + chr3_3:57916929-57916948 Msa0460500:intron 20.0%
!! CGTAATTATTAGACTAATTA+AGG - chr3_3:57917569-57917588 None:intergenic 20.0%
!! TTCACATATATAGACTTTAA+AGG - chr3_3:57917693-57917712 None:intergenic 20.0%
!! AAATTTAAGCAAGGTAATTA+AGG - chr3_3:57917762-57917781 None:intergenic 20.0%
!! CAAAAGTAAATAAACAAAGT+CGG - chr3_3:57918136-57918155 None:intergenic 20.0%
!! TCCTAATATTACAAATTTCA+AGG + chr3_3:57918469-57918488 Msa0460500:intron 20.0%
!! AAACCTAACAAATTCTAATA+TGG + chr3_3:57918897-57918916 Msa0460500:intron 20.0%
!! ACATATGGTAATAATTTCAT+GGG - chr3_3:57918965-57918984 None:intergenic 20.0%
!! AACATATGGTAATAATTTCA+TGG - chr3_3:57918966-57918985 None:intergenic 20.0%
!! TTATTACCATATGTTGTATT+TGG + chr3_3:57918971-57918990 Msa0460500:intron 20.0%
!! TATTACCATATGTTGTATTT+GGG + chr3_3:57918972-57918991 Msa0460500:intron 20.0%
!! ATTATATTAGAATAACCATG+TGG + chr3_3:57919086-57919105 Msa0460500:intron 20.0%
!!! AGATTGATTTAGATTCAATA+TGG + chr3_3:57919154-57919173 Msa0460500:intron 20.0%
!!! GATTGATTTAGATTCAATAT+GGG + chr3_3:57919155-57919174 Msa0460500:intron 20.0%
!!! ATTGATTTAGATTCAATATG+GGG + chr3_3:57919156-57919175 Msa0460500:intron 20.0%
!! AGATATTTCATGTTTACTTA+AGG - chr3_3:57919561-57919580 None:intergenic 20.0%
!! GAATTATATTTGAGTGTAAT+TGG + chr3_3:57919677-57919696 Msa0460500:intron 20.0%
!! AAATGAAAAACAAACACTTA+TGG - chr3_3:57919739-57919758 None:intergenic 20.0%
!! GGAAAAATAATATTCTACAT+TGG + chr3_3:57919871-57919890 Msa0460500:intron 20.0%
!!! TAGTCCCTTAAATTAATTTT+AGG + chr3_3:57920293-57920312 Msa0460500:intron 20.0%
!! TAATATATAAATTGGTGTGA+AGG + chr3_3:57920647-57920666 Msa0460500:three_prime_UTR 20.0%
!!! ATTACTTCTGAAATTATGTA+GGG - chr3_3:57920685-57920704 None:intergenic 20.0%
!!! AATTACTTCTGAAATTATGT+AGG - chr3_3:57920686-57920705 None:intergenic 20.0%
!! ATAAGAACTAAGTAAGAATA+TGG - chr3_3:57920937-57920956 None:intergenic 20.0%
!! ACACTTAAAATGAGATAATT+AGG + chr3_3:57920985-57921004 Msa0460500:three_prime_UTR 20.0%
!!! TGTTTTAAGAAGAAAGGAAA+AGG - chr3_3:57915147-57915166 None:intergenic 25.0%
!!! GCTCTTTGTTTTCTTTTTTT+AGG - chr3_3:57915497-57915516 None:intergenic 25.0%
! TTGAACAAAAACAAAAGGAT+TGG + chr3_3:57915565-57915584 Msa0460500:five_prime_UTR 25.0%
!!! AAAGAAGAATTAGAAGTACT+TGG - chr3_3:57915819-57915838 None:intergenic 25.0%
! AGAATTATGAGGTTCATAAT+TGG - chr3_3:57915862-57915881 None:intergenic 25.0%
! TAATTCTTCAAGAACAACTT+TGG + chr3_3:57915875-57915894 Msa0460500:CDS 25.0%
!!! TTTTGATAATAAGGGTTATG+TGG - chr3_3:57915987-57916006 None:intergenic 25.0%
!!! CTTGTTGGTTTTGATAATAA+GGG - chr3_3:57915995-57916014 None:intergenic 25.0%
! CACATGAATCACATAAATTA+TGG + chr3_3:57916095-57916114 Msa0460500:CDS 25.0%
! GAGAAAAATGTTTACTTTCA+TGG - chr3_3:57916625-57916644 None:intergenic 25.0%
!! GGTGTTATATTATAGGTATT+TGG + chr3_3:57916900-57916919 Msa0460500:intron 25.0%
! TTTGGCTAATGTAATTTAGA+TGG + chr3_3:57916918-57916937 Msa0460500:intron 25.0%
! AATTAAGTAGTAAGCTAAGA+AGG + chr3_3:57917146-57917165 Msa0460500:intron 25.0%
! TAAAATATGCATTAATCACG+AGG - chr3_3:57917319-57917338 None:intergenic 25.0%
! AATTTCTTGTGTTGAAATTG+TGG + chr3_3:57917403-57917422 Msa0460500:intron 25.0%
! GACTAATTAAGGGAAAAAAA+TGG - chr3_3:57917558-57917577 None:intergenic 25.0%
!! TATATATGTGAACACTTTTG+AGG + chr3_3:57917701-57917720 Msa0460500:intron 25.0%
!!! TATTTACTTTTGCTTTTGCA+TGG + chr3_3:57918144-57918163 Msa0460500:intron 25.0%
! AAGGTACAAAAGATATACAA+AGG - chr3_3:57918298-57918317 None:intergenic 25.0%
! GCCTTGAAATTTGTAATATT+AGG - chr3_3:57918473-57918492 None:intergenic 25.0%
! TCAAGATCCATATCAATATT+CGG - chr3_3:57918514-57918533 None:intergenic 25.0%
! AACTTAAGTACTAGTCATTT+GGG - chr3_3:57918594-57918613 None:intergenic 25.0%
!!! CTCAATTTGTTTTTATACGT+TGG + chr3_3:57918680-57918699 Msa0460500:intron 25.0%
!! TGTCAACTTATCAACTATTT+TGG - chr3_3:57918794-57918813 None:intergenic 25.0%
!! CTTTTATCCTAACTATTTAG+AGG - chr3_3:57918924-57918943 None:intergenic 25.0%
! CTCTAAATAGTTAGGATAAA+AGG + chr3_3:57918922-57918941 Msa0460500:intron 25.0%
! TTGATTTAGATTCAATATGG+GGG + chr3_3:57919157-57919176 Msa0460500:intron 25.0%
! ACAAAATAAAGAAGGTTTAC+AGG - chr3_3:57919229-57919248 None:intergenic 25.0%
! TCTCATTAAGTAAACATTAG+TGG + chr3_3:57919613-57919632 Msa0460500:intron 25.0%
! AAAAAATTGCATCAGTTCAA+TGG - chr3_3:57920045-57920064 None:intergenic 25.0%
!!! CTGATGCAATTTTTTTTTCT+TGG + chr3_3:57920050-57920069 Msa0460500:intron 25.0%
! CAAGCTTAATTAATTTCCTT+TGG + chr3_3:57920531-57920550 Msa0460500:exon 25.0%
! GTAATAGAGACAACTAATAT+GGG - chr3_3:57920559-57920578 None:intergenic 25.0%
! AGTAATAGAGACAACTAATA+TGG - chr3_3:57920560-57920579 None:intergenic 25.0%
!!! TTTTTTATTTATTGGTGAGG+AGG + chr3_3:57920753-57920772 Msa0460500:three_prime_UTR 25.0%
! AAAATGAGATAATTAGGACA+TGG + chr3_3:57920991-57921010 Msa0460500:three_prime_UTR 25.0%
GGAAAAGAAATATTCCAGAA+AGG - chr3_3:57915126-57915145 None:intergenic 30.0%
AAAGTCAAGAGAAAGAAGAA+GGG - chr3_3:57915278-57915297 None:intergenic 30.0%
AGAAGAAAAAGAAGAAGTCA+TGG - chr3_3:57915324-57915343 None:intergenic 30.0%
TATTCAAAAGCTATAGCACA+AGG + chr3_3:57915399-57915418 Msa0460500:five_prime_UTR 30.0%
!!! TCTTTTTTTAGGCTTTTCCT+TGG - chr3_3:57915486-57915505 None:intergenic 30.0%
AGTCCTTAATATTGTGTTTG+AGG + chr3_3:57915539-57915558 Msa0460500:five_prime_UTR 30.0%
AGTCCTCAAACACAATATTA+AGG - chr3_3:57915545-57915564 None:intergenic 30.0%
GGACTTTGAACAAAAACAAA+AGG + chr3_3:57915560-57915579 Msa0460500:five_prime_UTR 30.0%
CTTATATGAAGAGAAAGATC+AGG - chr3_3:57915792-57915811 None:intergenic 30.0%
TTATGAGGTTCATAATTGGA+TGG - chr3_3:57915858-57915877 None:intergenic 30.0%
GTTGTTCTTGAAGAATTATG+AGG - chr3_3:57915873-57915892 None:intergenic 30.0%
!!! CTTGGAAGAAATTTTAGTTG+TGG + chr3_3:57915927-57915946 Msa0460500:CDS 30.0%
!!! GCTTGTTGGTTTTGATAATA+AGG - chr3_3:57915996-57916015 None:intergenic 30.0%
! TTTTTCTCTTGAATGTTCCA+TGG - chr3_3:57916219-57916238 None:intergenic 30.0%
TGGTGATATAAACACATCTT+TGG - chr3_3:57916245-57916264 None:intergenic 30.0%
GGATATTGATGAGATTTGAA+AGG - chr3_3:57916416-57916435 None:intergenic 30.0%
ATACAATACATACCTGCAAA+TGG - chr3_3:57917021-57917040 None:intergenic 30.0%
ATGAAGGATTGTTGCATTAT+TGG - chr3_3:57917271-57917290 None:intergenic 30.0%
GCTAATAAGGTTGTAAATGA+AGG - chr3_3:57917287-57917306 None:intergenic 30.0%
TTTAAGCAAGGTAATTAAGG+TGG - chr3_3:57917759-57917778 None:intergenic 30.0%
! GTCAATTTTCAGATCAAAGA+GGG + chr3_3:57917941-57917960 Msa0460500:CDS 30.0%
! TAATCCATATCTTGCTGTAT+TGG - chr3_3:57917979-57917998 None:intergenic 30.0%
!! CTTCATAAAAAAGAGTGTTG+TGG - chr3_3:57918206-57918225 None:intergenic 30.0%
AAGAATAAAAAGGGTTCTTG+TGG + chr3_3:57918223-57918242 Msa0460500:intron 30.0%
! TCTTTTGTACCTTAGTGATT+TGG + chr3_3:57918305-57918324 Msa0460500:intron 30.0%
TCATAACCCGAATATTGATA+TGG + chr3_3:57918504-57918523 Msa0460500:intron 30.0%
CAAGATCCATATCAATATTC+GGG - chr3_3:57918513-57918532 None:intergenic 30.0%
!! TTGGGTTTTATGTAATCTAC+AGG - chr3_3:57918545-57918564 None:intergenic 30.0%
!!! TTTTTTGGAGTGAGTCATTT+GGG - chr3_3:57918563-57918582 None:intergenic 30.0%
!!! TTTTTTTGGAGTGAGTCATT+TGG - chr3_3:57918564-57918583 None:intergenic 30.0%
GAACTTAAGTACTAGTCATT+TGG - chr3_3:57918595-57918614 None:intergenic 30.0%
! ATGTTACTTGGAAGAATACA+TGG - chr3_3:57918630-57918649 None:intergenic 30.0%
TTGCACAAATCAAGAAATAG+TGG + chr3_3:57918704-57918723 Msa0460500:intron 30.0%
TATAGTGTTACACTTCATGT+TGG + chr3_3:57918753-57918772 Msa0460500:intron 30.0%
! GGTCCATATTAGAATTTGTT+AGG - chr3_3:57918903-57918922 None:intergenic 30.0%
ATATGGACCTCTAAATAGTT+AGG + chr3_3:57918914-57918933 Msa0460500:intron 30.0%
ACATTCCCAAATACAACATA+TGG - chr3_3:57918980-57918999 None:intergenic 30.0%
TGATTTAGATTCAATATGGG+GGG + chr3_3:57919158-57919177 Msa0460500:intron 30.0%
ATTAAAATTTAGGTGCACGA+GGG - chr3_3:57919193-57919212 None:intergenic 30.0%
AATTAAAATTTAGGTGCACG+AGG - chr3_3:57919194-57919213 None:intergenic 30.0%
GATTACTATAAAGGTAGAAC+TGG - chr3_3:57919376-57919395 None:intergenic 30.0%
AATGACAGACAGTAGTTAAT+AGG - chr3_3:57919487-57919506 None:intergenic 30.0%
CATTAAGTAAACATTAGTGG+TGG + chr3_3:57919616-57919635 Msa0460500:intron 30.0%
AAGGCTCATAATAGTAAGTT+TGG + chr3_3:57919655-57919674 Msa0460500:intron 30.0%
CTTATGGATGATACATTGAT+AGG - chr3_3:57919723-57919742 None:intergenic 30.0%
TAGTTGTAATACATAGCCTT+AGG + chr3_3:57919801-57919820 Msa0460500:intron 30.0%
GTACAATTAAACCAATCCTA+AGG - chr3_3:57919820-57919839 None:intergenic 30.0%
CTAATGATTGTTTCCATTAC+AGG + chr3_3:57920401-57920420 Msa0460500:intron 30.0%
ATTGAAATTGATAGAGCAAG+AGG - chr3_3:57920884-57920903 None:intergenic 30.0%
! AGAAGAATGATGGAATGGAA+GGG - chr3_3:57915182-57915201 None:intergenic 35.0%
! CTCATCACACTTTTCTTTCA+TGG + chr3_3:57915251-57915270 Msa0460500:five_prime_UTR 35.0%
CAAAGTCAAGAGAAAGAAGA+AGG - chr3_3:57915279-57915298 None:intergenic 35.0%
AAGTGCAATATTCACAAGCA+AGG - chr3_3:57915598-57915617 None:intergenic 35.0%
! GCATCTTCTTTAGAAAAAGG+TGG - chr3_3:57915722-57915741 None:intergenic 35.0%
! AGGGCATCTTCTTTAGAAAA+AGG - chr3_3:57915725-57915744 None:intergenic 35.0%
!! TTTTCTAAAGAAGATGCCCT+TGG + chr3_3:57915725-57915744 Msa0460500:exon 35.0%
TCAATGAAAATCCCTTCCAA+GGG - chr3_3:57915744-57915763 None:intergenic 35.0%
TTCAATGAAAATCCCTTCCA+AGG - chr3_3:57915745-57915764 None:intergenic 35.0%
!! GGTGTTGTTGATGTTGAAAT+TGG - chr3_3:57915768-57915787 None:intergenic 35.0%
ATATGAAGAGAAAGATCAGG+TGG - chr3_3:57915789-57915808 None:intergenic 35.0%
!! GAAGAATTAGAAGTACTTGG+AGG - chr3_3:57915816-57915835 None:intergenic 35.0%
TTGTTGTGATGTTGAAAGTG+AGG - chr3_3:57916026-57916045 None:intergenic 35.0%
TGTCATCAACATCATCAGAA+GGG + chr3_3:57916135-57916154 Msa0460500:CDS 35.0%
AAGGGTTAAGACCAATCAAA+GGG + chr3_3:57916153-57916172 Msa0460500:CDS 35.0%
AATGAACGGTTATGATAGAC+TGG - chr3_3:57916182-57916201 None:intergenic 35.0%
CTGGAGTTTAAAAACGACAT+GGG - chr3_3:57916344-57916363 None:intergenic 35.0%
ACTGGAGTTTAAAAACGACA+TGG - chr3_3:57916345-57916364 None:intergenic 35.0%
!!! ATGTCGTTTTTAAACTCCAG+TGG + chr3_3:57916344-57916363 Msa0460500:CDS 35.0%
GTTATTAAACCTTGTGGCTA+CGG - chr3_3:57916390-57916409 None:intergenic 35.0%
AGGTTCGTTATTAAACCTTG+TGG - chr3_3:57916396-57916415 None:intergenic 35.0%
ATCATCATCACTCACACTAT+GGG + chr3_3:57916450-57916469 Msa0460500:CDS 35.0%
CAAAAACCTTGATCTCATCA+TGG - chr3_3:57916504-57916523 None:intergenic 35.0%
! CTTCTTTTTGTCGGCAATTT+AGG - chr3_3:57916527-57916546 None:intergenic 35.0%
!! ATCAGTTCCAATACTGACTT+TGG - chr3_3:57916962-57916981 None:intergenic 35.0%
! AAAGTCAGTATTGGAACTGA+TGG + chr3_3:57916961-57916980 Msa0460500:CDS 35.0%
TCATGTAAAAAGCCATTTGC+AGG + chr3_3:57917006-57917025 Msa0460500:CDS 35.0%
ATAGCCAATGAAGAAGAAAG+TGG + chr3_3:57917082-57917101 Msa0460500:intron 35.0%
CAGTGAATGAATGAATGTGT+GGG + chr3_3:57917107-57917126 Msa0460500:intron 35.0%
!! GAGGTTGATGTTTGCTAATA+AGG - chr3_3:57917300-57917319 None:intergenic 35.0%
! CGTCAATTTTCAGATCAAAG+AGG + chr3_3:57917940-57917959 Msa0460500:CDS 35.0%
AGAATTACTCCATAGAGTGT+TGG - chr3_3:57918010-57918029 None:intergenic 35.0%
CTCTATGGAGTAATTCTTCA+AGG + chr3_3:57918013-57918032 Msa0460500:CDS 35.0%
! TTTGTACCTTAGTGATTTGG+TGG + chr3_3:57918308-57918327 Msa0460500:intron 35.0%
TAATCGAATGCTCATTCGTT+AGG + chr3_3:57918369-57918388 Msa0460500:intron 35.0%
TGCTCATTCGTTAGGATAAA+TGG + chr3_3:57918377-57918396 Msa0460500:intron 35.0%
CAAACATACACACAAGTCAA+AGG - chr3_3:57918447-57918466 None:intergenic 35.0%
AGGCATGTCTTTCTCTTATT+AGG + chr3_3:57919416-57919435 Msa0460500:intron 35.0%
TAAGTAAACATTAGTGGTGG+TGG + chr3_3:57919619-57919638 Msa0460500:intron 35.0%
TTACTATTATGAGCCTTGCA+TGG - chr3_3:57919652-57919671 None:intergenic 35.0%
! GTAATACATAGCCTTAGGAT+TGG + chr3_3:57919806-57919825 Msa0460500:intron 35.0%
ATAATTGGAGATGCTCTTGA+TGG - chr3_3:57919850-57919869 None:intergenic 35.0%
!! TCAAGAGCATCTCCAATTAT+TGG + chr3_3:57919850-57919869 Msa0460500:intron 35.0%
!! TGCATGAACTGTTTTGTTGA+TGG - chr3_3:57920001-57920020 None:intergenic 35.0%
CAAAACAGTTCATGCATGTT+TGG + chr3_3:57920005-57920024 Msa0460500:intron 35.0%
TTCCAATCACAACCAATATC+AGG + chr3_3:57920168-57920187 Msa0460500:CDS 35.0%
ATTTGATGTCCTCCTGATAT+TGG - chr3_3:57920183-57920202 None:intergenic 35.0%
TTTGAATCACACTCCTGTAA+TGG - chr3_3:57920417-57920436 None:intergenic 35.0%
ACAACTAATATGGGAACCAA+AGG - chr3_3:57920550-57920569 None:intergenic 35.0%
TTTATTTATTGGTGAGGAGG+AGG + chr3_3:57920756-57920775 Msa0460500:three_prime_UTR 35.0%
!! GGAGGAGGTATTTATTTACA+AGG + chr3_3:57920771-57920790 Msa0460500:three_prime_UTR 35.0%
TTAAGTGTGATACTCACGAA+TGG - chr3_3:57920973-57920992 None:intergenic 35.0%
! GAGAAGAATGATGGAATGGA+AGG - chr3_3:57915183-57915202 None:intergenic 40.0%
! TGGAGAGAAGAATGATGGAA+TGG - chr3_3:57915187-57915206 None:intergenic 40.0%
TGAAGTGGAGAGAAGAATGA+TGG - chr3_3:57915192-57915211 None:intergenic 40.0%
!!! GGAAGACTAGTGTTTTGAAG+TGG - chr3_3:57915207-57915226 None:intergenic 40.0%
AGAGAGAGAGGAAGAAGATA+GGG - chr3_3:57915229-57915248 None:intergenic 40.0%
AGCTTTCCAGATTCTTTCCA+AGG + chr3_3:57915466-57915485 Msa0460500:five_prime_UTR 40.0%
! GCTTTTCCTTGGAAAGAATC+TGG - chr3_3:57915475-57915494 None:intergenic 40.0%
TAAAGAAGATGCCCTTGGAA+GGG + chr3_3:57915730-57915749 Msa0460500:exon 40.0%
! GGTTGTTGTTGATGTTGTTG+TGG - chr3_3:57915966-57915985 None:intergenic 40.0%
AGTGAGGAAAATGAGCTTGT+TGG - chr3_3:57916010-57916029 None:intergenic 40.0%
GTGTCATCAACATCATCAGA+AGG + chr3_3:57916134-57916153 Msa0460500:CDS 40.0%
GAAGGGTTAAGACCAATCAA+AGG + chr3_3:57916152-57916171 Msa0460500:CDS 40.0%
TAGACTGGAATCCCTTTGAT+TGG - chr3_3:57916167-57916186 None:intergenic 40.0%
CTGGTAAAAAGGGGAATGAA+CGG - chr3_3:57916196-57916215 None:intergenic 40.0%
TGTTCCATGGCTGGTAAAAA+GGG - chr3_3:57916206-57916225 None:intergenic 40.0%
ATGTTCCATGGCTGGTAAAA+AGG - chr3_3:57916207-57916226 None:intergenic 40.0%
! AGTGTGAGTGATGATGATGA+TGG - chr3_3:57916448-57916467 None:intergenic 40.0%
CATCATCATCACTCACACTA+TGG + chr3_3:57916449-57916468 Msa0460500:CDS 40.0%
AAGCATCCATGATGAGATCA+AGG + chr3_3:57916495-57916514 Msa0460500:CDS 40.0%
! GCTCTCATGCTTCTTTTTGT+CGG - chr3_3:57916536-57916555 None:intergenic 40.0%
CAGCATGAACAAATCTAGCA+TGG - chr3_3:57916586-57916605 None:intergenic 40.0%
CTTGTGAGAGTGAGACTATT+AGG + chr3_3:57916822-57916841 Msa0460500:intron 40.0%
TGAGAGTGAGACTATTAGGT+GGG + chr3_3:57916826-57916845 Msa0460500:intron 40.0%
AGCAACACCAAAGTCAGTAT+TGG + chr3_3:57916952-57916971 Msa0460500:CDS 40.0%
! ATTGGAACTGATGGATGTGA+AGG + chr3_3:57916970-57916989 Msa0460500:CDS 40.0%
TGCACCACTTTCTTCTTCAT+TGG - chr3_3:57917089-57917108 None:intergenic 40.0%
GCAGTGAATGAATGAATGTG+TGG + chr3_3:57917106-57917125 Msa0460500:intron 40.0%
AATGAATGAATGTGTGGGAG+TGG + chr3_3:57917112-57917131 Msa0460500:intron 40.0%
GAGGATGATGTACCACAAAT+TGG + chr3_3:57917901-57917920 Msa0460500:CDS 40.0%
GTACCACAAATTGGAAGCAA+TGG + chr3_3:57917910-57917929 Msa0460500:CDS 40.0%
TCGACCAATACAGCAAGATA+TGG + chr3_3:57917972-57917991 Msa0460500:CDS 40.0%
!! ATTACTCCATAGAGTGTTGG+TGG - chr3_3:57918007-57918026 None:intergenic 40.0%
!! AAAAAGAGTGTTGTGGACGT+GGG - chr3_3:57918199-57918218 None:intergenic 40.0%
!! AAAAAAGAGTGTTGTGGACG+TGG - chr3_3:57918200-57918219 None:intergenic 40.0%
!! ACCTTAGTGATTTGGTGGAT+TGG + chr3_3:57918313-57918332 Msa0460500:intron 40.0%
ACCAATCCACCAAATCACTA+AGG - chr3_3:57918317-57918336 None:intergenic 40.0%
ACCATGTGGTGAAATTCTTG+AGG + chr3_3:57919100-57919119 Msa0460500:intron 40.0%
ACCTCAAGAATTTCACCACA+TGG - chr3_3:57919104-57919123 None:intergenic 40.0%
ACATTGATAGGCAAGTCACA+TGG - chr3_3:57919711-57919730 None:intergenic 40.0%
! ATGTCGTTTGGACTTGTTTG+TGG - chr3_3:57920126-57920145 None:intergenic 40.0%
ACAAGTCCAAACGACATAGA+TGG + chr3_3:57920129-57920148 Msa0460500:CDS 40.0%
CTGAAACCATCTATGTCGTT+TGG - chr3_3:57920138-57920157 None:intergenic 40.0%
GGTTGTGATTGGAAGATAGT+TGG - chr3_3:57920162-57920181 None:intergenic 40.0%
! CTCCTGATATTGGTTGTGAT+TGG - chr3_3:57920173-57920192 None:intergenic 40.0%
CAATCACAACCAATATCAGG+AGG + chr3_3:57920171-57920190 Msa0460500:CDS 40.0%
ATCAGGAGGACATCAAATTC+AGG + chr3_3:57920185-57920204 Msa0460500:CDS 40.0%
CAGCTCAAGAACAATTTGTC+AGG + chr3_3:57920438-57920457 Msa0460500:CDS 40.0%
CTAATGTGAACTCCAAGCTT+GGG - chr3_3:57920485-57920504 None:intergenic 40.0%
TCACATTAGGCATACCAGAT+TGG + chr3_3:57920496-57920515 Msa0460500:CDS 40.0%
TTAGGCATACCAGATTGGAA+TGG + chr3_3:57920501-57920520 Msa0460500:CDS 40.0%
ATACCAGATTGGAATGGCAA+AGG + chr3_3:57920507-57920526 Msa0460500:CDS 40.0%
GACGAAGTTGTGTCATATTG+TGG - chr3_3:57920605-57920624 None:intergenic 40.0%
GCTGCATATGTAGAAGAACA+AGG + chr3_3:57920807-57920826 Msa0460500:three_prime_UTR 40.0%
! GAATGATGGAATGGAAGGGA+AGG - chr3_3:57915178-57915197 None:intergenic 45.0%
GAGAGAGAGGAAGAAGATAG+GGG - chr3_3:57915228-57915247 None:intergenic 45.0%
GAGAGAGAGAGGAAGAAGAT+AGG - chr3_3:57915230-57915249 None:intergenic 45.0%
CTAAAGAAGATGCCCTTGGA+AGG + chr3_3:57915729-57915748 Msa0460500:exon 45.0%
GCTCACACTGAACTATCTCT+TGG + chr3_3:57915909-57915928 Msa0460500:CDS 45.0%
! ATTCCCCTTTTTACCAGCCA+TGG + chr3_3:57916199-57916218 Msa0460500:CDS 45.0%
GTTCCATGGCTGGTAAAAAG+GGG - chr3_3:57916205-57916224 None:intergenic 45.0%
TCTCTTGAATGTTCCATGGC+TGG - chr3_3:57916215-57916234 None:intergenic 45.0%
ACGGAGTTGAATTAGGCATG+TGG - chr3_3:57916265-57916284 None:intergenic 45.0%
GAAGGAGACGGAGTTGAATT+AGG - chr3_3:57916272-57916291 None:intergenic 45.0%
GAAGATGACGAAGAAGGAGA+CGG - chr3_3:57916284-57916303 None:intergenic 45.0%
AGAGGTGAAGATGACGAAGA+AGG - chr3_3:57916290-57916309 None:intergenic 45.0%
! TTTAAACTCCAGTGGCTCTG+CGG + chr3_3:57916352-57916371 Msa0460500:CDS 45.0%
ATTAAACCTTGTGGCTACGG+CGG - chr3_3:57916387-57916406 None:intergenic 45.0%
!! TGATGATGATGGTGGTGCAA+TGG - chr3_3:57916437-57916456 None:intergenic 45.0%
!! GTGAGTGATGATGATGATGG+TGG - chr3_3:57916445-57916464 None:intergenic 45.0%
GTACTTGTCCATCGCATTCT+TGG - chr3_3:57916560-57916579 None:intergenic 45.0%
GTTCATGCTGTTGAGCTTCT+TGG + chr3_3:57916596-57916615 Msa0460500:CDS 45.0%
GTGAGAGTGAGACTATTAGG+TGG + chr3_3:57916825-57916844 Msa0460500:intron 45.0%
ATCAGAGACTGTGTCATGTC+TGG - chr3_3:57917193-57917212 None:intergenic 45.0%
GAATTACCTGAAGAAGCTGC+AGG - chr3_3:57917517-57917536 None:intergenic 45.0%
! GTTGGATTAGGCCTTTCAGA+TGG + chr3_3:57917871-57917890 Msa0460500:intron 45.0%
TTAGGCCTTTCAGATGGATC+TGG + chr3_3:57917877-57917896 Msa0460500:intron 45.0%
CCACCATTGCTTCCAATTTG+TGG - chr3_3:57917916-57917935 None:intergenic 45.0%
CCACAAATTGGAAGCAATGG+TGG + chr3_3:57917913-57917932 Msa0460500:CDS 45.0%
ACTCATCCACCAACACTCTA+TGG + chr3_3:57917998-57918017 Msa0460500:CDS 45.0%
!! GTAAACATTAGTGGTGGTGG+AGG + chr3_3:57919622-57919641 Msa0460500:intron 45.0%
! TTTGGACTTGTTTGTGGCCA+TGG - chr3_3:57920120-57920139 None:intergenic 45.0%
AGAGTGTAAGAACCCAAGCT+TGG + chr3_3:57920470-57920489 Msa0460500:CDS 45.0%
CCTAATGTGAACTCCAAGCT+TGG - chr3_3:57920486-57920505 None:intergenic 45.0%
CCAAGCTTGGAGTTCACATT+AGG + chr3_3:57920483-57920502 Msa0460500:CDS 45.0%
TGTCCTTTGCCATTCCAATC+TGG - chr3_3:57920513-57920532 None:intergenic 45.0%
!!! TTTTTATATATATATTTAAG+AGG - chr3_3:57917734-57917753 None:intergenic 5.0%
!!! AATTAAATACAATTTTTTTT+TGG - chr3_3:57920254-57920273 None:intergenic 5.0%
!!! AAAAAAATTGTATTTAATTT+AGG + chr3_3:57920255-57920274 Msa0460500:intron 5.0%
!! TAGATATATAATATATAAAT+TGG + chr3_3:57920639-57920658 Msa0460500:three_prime_UTR 5.0%
!!! TGTATTTATTTTTTATTTAT+TGG + chr3_3:57920745-57920764 Msa0460500:three_prime_UTR 5.0%
GTGTGATGAGAGAGAGAGAG+AGG - chr3_3:57915241-57915260 None:intergenic 50.0%
TTTCCCCCTACATAGCTGCA+GGG + chr3_3:57916309-57916328 Msa0460500:CDS 50.0%
AAACCCCCTGCAGCTATGTA+GGG - chr3_3:57916317-57916336 None:intergenic 50.0%
TAAACCCCCTGCAGCTATGT+AGG - chr3_3:57916318-57916337 None:intergenic 50.0%
! CACTCACACTATGGGAGTGT+TGG + chr3_3:57916458-57916477 Msa0460500:CDS 50.0%
!! CACTATGGGAGTGTTGGACT+TGG + chr3_3:57916464-57916483 Msa0460500:CDS 50.0%
!! TGAGAGCACCAAGAATGCGA+TGG + chr3_3:57916549-57916568 Msa0460500:CDS 50.0%
CATGCTGTTGAGCTTCTTGG+TGG + chr3_3:57916599-57916618 Msa0460500:CDS 50.0%
GACAAACCTGCAGCTTCTTC+AGG + chr3_3:57917508-57917527 Msa0460500:CDS 50.0%
CCTCTCCAGATCCATCTGAA+AGG - chr3_3:57917885-57917904 None:intergenic 50.0%
CCTTTCAGATGGATCTGGAG+AGG + chr3_3:57917882-57917901 Msa0460500:CDS 50.0%
GACACAACTTCGTCATGCAG+AGG + chr3_3:57920611-57920630 Msa0460500:three_prime_UTR 50.0%
GTGTGATACTCACGAATGGC+AGG - chr3_3:57920969-57920988 None:intergenic 50.0%
GCAGCTATGTAGGGGGAAAG+AGG - chr3_3:57916308-57916327 None:intergenic 55.0%
CTTTCCCCCTACATAGCTGC+AGG + chr3_3:57916308-57916327 Msa0460500:CDS 55.0%
TTCCCCCTACATAGCTGCAG+GGG + chr3_3:57916310-57916329 Msa0460500:CDS 55.0%
AACCCCCTGCAGCTATGTAG+GGG - chr3_3:57916316-57916335 None:intergenic 55.0%
TCTATAAGCCGCAGAGCCAC+TGG - chr3_3:57916363-57916382 None:intergenic 55.0%
TGGTGGAGGCTTACCATGCA+AGG + chr3_3:57919636-57919655 Msa0460500:intron 55.0%
TCCCCCTACATAGCTGCAGG+GGG + chr3_3:57916311-57916330 Msa0460500:CDS 60.0%
ACCCCCTGCAGCTATGTAGG+GGG - chr3_3:57916315-57916334 None:intergenic 60.0%
ATAGAGCCGCCGTAGCCACA+AGG + chr3_3:57916378-57916397 Msa0460500:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 57915114 57921024 57915114 ID=Msa0460500;Name=Msa0460500
chr3_3 mRNA 57915114 57921024 57915114 ID=Msa0460500-mRNA-1;Parent=Msa0460500;Name=Msa0460500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=624|0.8|0.83|1|1|1|6|485|461
chr3_3 exon 57915114 57916629 57915114 ID=Msa0460500-mRNA-1:exon:11918;Parent=Msa0460500-mRNA-1
chr3_3 exon 57916951 57917027 57916951 ID=Msa0460500-mRNA-1:exon:11919;Parent=Msa0460500-mRNA-1
chr3_3 exon 57917484 57917529 57917484 ID=Msa0460500-mRNA-1:exon:11920;Parent=Msa0460500-mRNA-1
chr3_3 exon 57917881 57918034 57917881 ID=Msa0460500-mRNA-1:exon:11921;Parent=Msa0460500-mRNA-1
chr3_3 exon 57920107 57920206 57920107 ID=Msa0460500-mRNA-1:exon:11922;Parent=Msa0460500-mRNA-1
chr3_3 exon 57920423 57921024 57920423 ID=Msa0460500-mRNA-1:exon:11923;Parent=Msa0460500-mRNA-1
chr3_3 five_prime_UTR 57915114 57915737 57915114 ID=Msa0460500-mRNA-1:five_prime_utr;Parent=Msa0460500-mRNA-1
chr3_3 CDS 57915738 57916629 57915738 ID=Msa0460500-mRNA-1:cds;Parent=Msa0460500-mRNA-1
chr3_3 CDS 57916951 57917027 57916951 ID=Msa0460500-mRNA-1:cds;Parent=Msa0460500-mRNA-1
chr3_3 CDS 57917484 57917529 57917484 ID=Msa0460500-mRNA-1:cds;Parent=Msa0460500-mRNA-1
chr3_3 CDS 57917881 57918034 57917881 ID=Msa0460500-mRNA-1:cds;Parent=Msa0460500-mRNA-1
chr3_3 CDS 57920107 57920206 57920107 ID=Msa0460500-mRNA-1:cds;Parent=Msa0460500-mRNA-1
chr3_3 CDS 57920423 57920539 57920423 ID=Msa0460500-mRNA-1:cds;Parent=Msa0460500-mRNA-1
chr3_3 three_prime_UTR 57920540 57921024 57920540 ID=Msa0460500-mRNA-1:three_prime_utr;Parent=Msa0460500-mRNA-1
Gene Sequence

>Msa0460500

ATGCCCTTGGAAGGGATTTTCATTGAACCAATTTCAACATCAACAACACCACCTGATCTTTCTCTTCATATAAGTCCTCCAAGTACTTCTAATTCTTCTTTGATTAACACAACTCAACCATCCAATTATGAACCTCATAATTCTTCAAGAACAACTTTGGCTCAAGCTCAAGCTCACACTGAACTATCTCTTGGAAGAAATTTTAGTTGTGGTGCTCAAGAACAACCACAACAACATCAACAACAACCACATAACCCTTATTATCAAAACCAACAAGCTCATTTTCCTCACTTTCAACATCACAACAATCACAGCTCTACAACAACAACAACAAGTACTACAACAAATTCTTCAAGTCACATGAATCACATAAATTATGGTGTTTCATTGCTTGATGTGTCATCAACATCATCAGAAGGGTTAAGACCAATCAAAGGGATTCCAGTCTATCATAACCGTTCATTCCCCTTTTTACCAGCCATGGAACATTCAAGAGAAAAAGATCCAAAGATGTGTTTATATCACCACATGCCTAATTCAACTCCGTCTCCTTCTTCGTCATCTTCACCTCTTTCCCCCTACATAGCTGCAGGGGGTTTAGATCCCATGTCGTTTTTAAACTCCAGTGGCTCTGCGGCTTATAGAGCCGCCGTAGCCACAAGGTTTAATAACGAACCTTTCAAATCTCATCAATATCCATTGCACCACCATCATCATCATCACTCACACTATGGGAGTGTTGGACTTGGTAGCTCAGAAGCATCCATGATGAGATCAAGGTTTTTGCCTAAATTGCCGACAAAAAGAAGCATGAGAGCACCAAGAATGCGATGGACAAGTACACTCCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCAACACCAAAGTCAGTATTGGAACTGATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACAACTGACAAACCTGCAGCTTCTTCAGGCCTTTCAGATGGATCTGGAGAGGATGATGTACCACAAATTGGAAGCAATGGTGGAATTCGTCAATTTTCAGATCAAAGAGGGCTAACAGATCGACCAATACAGCAAGATATGGATTACTCATCCACCAACACTCTATGGAGTAATTCTTCAAGTAGTAGAGAACCATGGCCACAAACAAGTCCAAACGACATAGATGGTTTCAGACCAACTATCTTCCAATCACAACCAATATCAGGAGGACATCAAATTCAGGAGTGTGATTCAAATCAGCTCAAGAACAATTTGTCAGGATCTAATTTAGAGTGTAAGAACCCAAGCTTGGAGTTCACATTAGGCATACCAGATTGGAATGGCAAAGGACAAGCTTAA
Protein sequence

>Msa0460500

MPLEGIFIEPISTSTTPPDLSLHISPPSTSNSSLINTTQPSNYEPHNSSRTTLAQAQAHTELSLGRNFSCGAQEQPQQHQQQPHNPYYQNQQAHFPHFQHHNNHSSTTTTTSTTTNSSSHMNHINYGVSLLDVSSTSSEGLRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSTPSPSSSSSPLSPYIAAGGLDPMSFLNSSGSAAYRAAVATRFNNEPFKSHQYPLHHHHHHHSHYGSVGLGSSEASMMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDVPQIGSNGGIRQFSDQRGLTDRPIQQDMDYSSTNTLWSNSSSSREPWPQTSPNDIDGFRPTIFQSQPISGGHQIQECDSNQLKNNLSGSNLECKNPSLEFTLGIPDWNGKGQA*