Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480110 | XP_013460707.1 | 86.268 | 284 | 14 | 3 | 1 | 283 | 1 | 260 | 1.72e-176 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480110 | sp|O80942|ZFP10_ARATH | 75.439 | 57 | 11 | 1 | 33 | 89 | 18 | 71 | 8.00e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480110 | A0A072UZ72 | 86.268 | 284 | 14 | 3 | 1 | 283 | 1 | 260 | 8.24e-177 | 497 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0415890 | Msa0480110 | 0.856604 | 2.875544e-62 | -8.615850e-47 |
| Msa0480110 | Msa1106590 | 0.828676 | 7.877379e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480110 | MtrunA17_Chr3g0112181 | 86.268 | 284 | 14 | 3 | 1 | 283 | 1 | 260 | 1.59e-180 | 497 |
| Msa0480110 | MtrunA17_Chr5g0435711 | 44.561 | 285 | 86 | 14 | 8 | 283 | 11 | 232 | 6.75e-48 | 159 |
| Msa0480110 | MtrunA17_Chr4g0009461 | 65.060 | 83 | 16 | 2 | 33 | 102 | 36 | 118 | 5.05e-29 | 112 |
| Msa0480110 | MtrunA17_Chr5g0400571 | 71.930 | 57 | 15 | 1 | 33 | 89 | 59 | 114 | 4.75e-23 | 95.1 |
| Msa0480110 | MtrunA17_Chr2g0315591 | 49.398 | 83 | 39 | 1 | 10 | 89 | 2 | 84 | 2.66e-19 | 84.3 |
| Msa0480110 | MtrunA17_Chr1g0184381 | 80.952 | 42 | 8 | 0 | 49 | 90 | 29 | 70 | 9.90e-18 | 79.3 |
| Msa0480110 | MtrunA17_Chr7g0239441 | 70.000 | 50 | 15 | 0 | 55 | 104 | 37 | 86 | 8.96e-16 | 72.8 |
| Msa0480110 | MtrunA17_Chr4g0032111 | 62.500 | 48 | 18 | 0 | 54 | 101 | 20 | 67 | 1.43e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480110 | AT2G37740.1 | 75.439 | 57 | 11 | 1 | 33 | 89 | 18 | 71 | 8.13e-24 | 98.6 |
| Msa0480110 | AT4G17810.2 | 69.091 | 55 | 17 | 0 | 30 | 84 | 19 | 73 | 1.36e-22 | 92.4 |
| Msa0480110 | AT4G17810.1 | 69.091 | 55 | 17 | 0 | 30 | 84 | 19 | 73 | 1.55e-22 | 92.8 |
| Msa0480110 | AT5G06070.1 | 74.545 | 55 | 13 | 1 | 35 | 88 | 32 | 86 | 2.86e-21 | 90.1 |
| Msa0480110 | AT3G23130.1 | 82.927 | 41 | 7 | 0 | 47 | 87 | 37 | 77 | 8.81e-18 | 80.1 |
| Msa0480110 | AT2G42410.2 | 78.049 | 41 | 9 | 0 | 48 | 88 | 40 | 80 | 4.24e-17 | 78.6 |
| Msa0480110 | AT2G42410.1 | 78.049 | 41 | 9 | 0 | 48 | 88 | 40 | 80 | 4.24e-17 | 78.6 |
| Msa0480110 | AT2G42410.3 | 78.049 | 41 | 9 | 0 | 48 | 88 | 66 | 106 | 4.86e-17 | 79.0 |
| Msa0480110 | AT3G09290.1 | 63.636 | 44 | 16 | 0 | 55 | 98 | 33 | 76 | 1.70e-12 | 64.7 |
| Msa0480110 | AT3G53820.1 | 68.571 | 35 | 11 | 0 | 55 | 89 | 19 | 53 | 5.91e-11 | 59.7 |
Find 50 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTCTTCTTCAATTAGA+TGG | 0.176609 | 3_3:-85289619 | Msa0480110:CDS |
| TGTTGAAACAAGTTTGTCTA+TGG | 0.217128 | 3_3:-85289507 | Msa0480110:CDS |
| CTAATTATTGTTCTAACTTA+TGG | 0.218217 | 3_3:-85289728 | Msa0480110:CDS |
| TTCCCAAGACTTGTTGTTGA+TGG | 0.233876 | 3_3:+85290006 | None:intergenic |
| TTTAGGTCTGCTCAAGCTTT+AGG | 0.265540 | 3_3:-85289893 | Msa0480110:CDS |
| GGACAAAATAATTCAATGTT+TGG | 0.329063 | 3_3:-85289485 | Msa0480110:CDS |
| AGATCCAAGTCTTCTATTCC+AGG | 0.334055 | 3_3:+85289296 | None:intergenic |
| AATGAAGTTCTAATTCATTA+TGG | 0.338881 | 3_3:+85289813 | None:intergenic |
| GGATACTTGGTGGATGTATA+TGG | 0.348621 | 3_3:-85289955 | Msa0480110:CDS |
| GAAGAAATGGAAGCTGTCTT+TGG | 0.357856 | 3_3:+85289401 | None:intergenic |
| GAAGAGTTATCTCTGCTTGT+TGG | 0.403326 | 3_3:+85289698 | None:intergenic |
| CAGTCTGCAGAGTTTGTGGT+TGG | 0.405826 | 3_3:-85289326 | Msa0480110:CDS |
| TAAATATGATGTGGATGAAA+AGG | 0.412314 | 3_3:-85290075 | Msa0480110:CDS |
| GACAGGCAGTGAAGAAGAAA+TGG | 0.412947 | 3_3:+85289388 | None:intergenic |
| TCTTGTGTAGATGCAGTTGA+TGG | 0.423703 | 3_3:+85289668 | None:intergenic |
| AATGAAGGAGTGCCATCATT+TGG | 0.429411 | 3_3:-85290031 | Msa0480110:CDS |
| GAAGAATATGAAGACATGTT+TGG | 0.429891 | 3_3:+85289632 | None:intergenic |
| ATATTCTTCTTCAATTAGAT+GGG | 0.438910 | 3_3:-85289618 | Msa0480110:CDS |
| GAAGATGCAGCTAGGATACT+TGG | 0.443307 | 3_3:-85289968 | Msa0480110:CDS |
| GAACCATCAACAACAAGTCT+TGG | 0.447185 | 3_3:-85290009 | Msa0480110:CDS |
| ACTTCTGTAAAAGAGAGTTT+AGG | 0.451370 | 3_3:-85289910 | Msa0480110:CDS |
| TTGGATCTTGAACTCAGGCT+TGG | 0.454061 | 3_3:-85289281 | Msa0480110:CDS |
| TGGATCTTGAACTCAGGCTT+GGG | 0.459255 | 3_3:-85289280 | Msa0480110:CDS |
| AAACATGGCTTCAGCAAGAC+AGG | 0.470524 | 3_3:+85289371 | None:intergenic |
| AAGTGACATGAGTAAGATCT+TGG | 0.483411 | 3_3:+85289929 | None:intergenic |
| TTTGTGGTTGGAGTTAAGCC+TGG | 0.483977 | 3_3:-85289314 | Msa0480110:CDS |
| TTGTTGATGGTTCCAAATGA+TGG | 0.490417 | 3_3:+85290019 | None:intergenic |
| AACCATCAACAACAAGTCTT+GGG | 0.510991 | 3_3:-85290008 | Msa0480110:CDS |
| GTTGAAACAAGTTTGTCTAT+GGG | 0.512192 | 3_3:-85289506 | Msa0480110:CDS |
| AAGACTTGGATCTTGAACTC+AGG | 0.538252 | 3_3:-85289286 | Msa0480110:CDS |
| GAGTCTCTTGATTCTGAACA+AGG | 0.543085 | 3_3:-85289581 | Msa0480110:CDS |
| AGGTCTGCTCAAGCTTTAGG+TGG | 0.544624 | 3_3:-85289890 | Msa0480110:CDS |
| AACAAGGGCTAGCTAATGCA+AGG | 0.555187 | 3_3:-85289565 | Msa0480110:CDS |
| TAAGCCTGGAATAGAAGACT+TGG | 0.563435 | 3_3:-85289300 | Msa0480110:CDS |
| ATCTTGCACTCACACAATGA+AGG | 0.564898 | 3_3:-85290046 | Msa0480110:CDS |
| GCAGAGATAACTCTTCTACT+TGG | 0.579663 | 3_3:-85289691 | Msa0480110:CDS |
| TATTCTTCTTCAATTAGATG+GGG | 0.582180 | 3_3:-85289617 | Msa0480110:CDS |
| GATGCAGCTAGGATACTTGG+TGG | 0.596955 | 3_3:-85289965 | Msa0480110:CDS |
| TGACATGAGTAAGATCTTGG+AGG | 0.599612 | 3_3:+85289932 | None:intergenic |
| ACTGATGATGATTCATGTGG+TGG | 0.616045 | 3_3:-85289449 | Msa0480110:CDS |
| GAAGTTCTAATTCATTATGG+TGG | 0.618063 | 3_3:+85289816 | None:intergenic |
| CTGATGATGATTCATGTGGT+GGG | 0.621213 | 3_3:-85289448 | Msa0480110:CDS |
| ATTCTTCTTCAATTAGATGG+GGG | 0.625385 | 3_3:-85289616 | Msa0480110:CDS |
| AGGAATCACTAAATATGATG+TGG | 0.652487 | 3_3:-85290084 | Msa0480110:CDS |
| AAACATCTATCATTCAAACA+TGG | 0.662081 | 3_3:+85289356 | None:intergenic |
| TGATGATGATTCATGTGGTG+GGG | 0.671193 | 3_3:-85289447 | Msa0480110:CDS |
| AGTCTCTTGATTCTGAACAA+GGG | 0.707551 | 3_3:-85289580 | Msa0480110:CDS |
| ACAAGGGCTAGCTAATGCAA+GGG | 0.711358 | 3_3:-85289564 | Msa0480110:CDS |
| CAAACTGATGATGATTCATG+TGG | 0.716039 | 3_3:-85289452 | Msa0480110:CDS |
| CAGAATCAAGAGACTCCATG+TGG | 0.748859 | 3_3:+85289588 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAAGTTCTAATTCATTA+TGG | + | chr3_3:85289537-85289556 | None:intergenic | 20.0% |
| !! | CTAATTATTGTTCTAACTTA+TGG | - | chr3_3:85289619-85289638 | Msa0480110:CDS | 20.0% |
| !! | ATATTCTTCTTCAATTAGAT+GGG | - | chr3_3:85289729-85289748 | Msa0480110:CDS | 20.0% |
| !!! | AATGAAGTTCTAATTCATTA+TGG | + | chr3_3:85289537-85289556 | None:intergenic | 20.0% |
| !! | CTAATTATTGTTCTAACTTA+TGG | - | chr3_3:85289619-85289638 | Msa0480110:CDS | 20.0% |
| !! | ATATTCTTCTTCAATTAGAT+GGG | - | chr3_3:85289729-85289748 | Msa0480110:CDS | 20.0% |
| ! | TAAATATGATGTGGATGAAA+AGG | - | chr3_3:85289272-85289291 | Msa0480110:CDS | 25.0% |
| ! | CATATTCTTCTTCAATTAGA+TGG | - | chr3_3:85289728-85289747 | Msa0480110:CDS | 25.0% |
| ! | TATTCTTCTTCAATTAGATG+GGG | - | chr3_3:85289730-85289749 | Msa0480110:CDS | 25.0% |
| !! | GAACAAATTTTCAAAGGTTA+TGG | - | chr3_3:85289805-85289824 | Msa0480110:CDS | 25.0% |
| ! | GGACAAAATAATTCAATGTT+TGG | - | chr3_3:85289862-85289881 | Msa0480110:CDS | 25.0% |
| ! | AAACATCTATCATTCAAACA+TGG | + | chr3_3:85289994-85290013 | None:intergenic | 25.0% |
| ! | TAAATATGATGTGGATGAAA+AGG | - | chr3_3:85289272-85289291 | Msa0480110:CDS | 25.0% |
| ! | CATATTCTTCTTCAATTAGA+TGG | - | chr3_3:85289728-85289747 | Msa0480110:CDS | 25.0% |
| ! | TATTCTTCTTCAATTAGATG+GGG | - | chr3_3:85289730-85289749 | Msa0480110:CDS | 25.0% |
| !! | GAACAAATTTTCAAAGGTTA+TGG | - | chr3_3:85289805-85289824 | Msa0480110:CDS | 25.0% |
| ! | GGACAAAATAATTCAATGTT+TGG | - | chr3_3:85289862-85289881 | Msa0480110:CDS | 25.0% |
| ! | AAACATCTATCATTCAAACA+TGG | + | chr3_3:85289994-85290013 | None:intergenic | 25.0% |
| AGGAATCACTAAATATGATG+TGG | - | chr3_3:85289263-85289282 | Msa0480110:CDS | 30.0% | |
| ACTTCTGTAAAAGAGAGTTT+AGG | - | chr3_3:85289437-85289456 | Msa0480110:CDS | 30.0% | |
| ! | GAAGTTCTAATTCATTATGG+TGG | + | chr3_3:85289534-85289553 | None:intergenic | 30.0% |
| GAAGAATATGAAGACATGTT+TGG | + | chr3_3:85289718-85289737 | None:intergenic | 30.0% | |
| ATTCTTCTTCAATTAGATGG+GGG | - | chr3_3:85289731-85289750 | Msa0480110:CDS | 30.0% | |
| TGTTGAAACAAGTTTGTCTA+TGG | - | chr3_3:85289840-85289859 | Msa0480110:CDS | 30.0% | |
| GTTGAAACAAGTTTGTCTAT+GGG | - | chr3_3:85289841-85289860 | Msa0480110:CDS | 30.0% | |
| ! | CATCATCAGTTTGCAATTTT+TGG | + | chr3_3:85289888-85289907 | None:intergenic | 30.0% |
| AGGAATCACTAAATATGATG+TGG | - | chr3_3:85289263-85289282 | Msa0480110:CDS | 30.0% | |
| ACTTCTGTAAAAGAGAGTTT+AGG | - | chr3_3:85289437-85289456 | Msa0480110:CDS | 30.0% | |
| ! | GAAGTTCTAATTCATTATGG+TGG | + | chr3_3:85289534-85289553 | None:intergenic | 30.0% |
| GAAGAATATGAAGACATGTT+TGG | + | chr3_3:85289718-85289737 | None:intergenic | 30.0% | |
| ATTCTTCTTCAATTAGATGG+GGG | - | chr3_3:85289731-85289750 | Msa0480110:CDS | 30.0% | |
| TGTTGAAACAAGTTTGTCTA+TGG | - | chr3_3:85289840-85289859 | Msa0480110:CDS | 30.0% | |
| GTTGAAACAAGTTTGTCTAT+GGG | - | chr3_3:85289841-85289860 | Msa0480110:CDS | 30.0% | |
| ! | CATCATCAGTTTGCAATTTT+TGG | + | chr3_3:85289888-85289907 | None:intergenic | 30.0% |
| !! | TTGTTGATGGTTCCAAATGA+TGG | + | chr3_3:85289331-85289350 | None:intergenic | 35.0% |
| AACCATCAACAACAAGTCTT+GGG | - | chr3_3:85289339-85289358 | Msa0480110:CDS | 35.0% | |
| AAGTGACATGAGTAAGATCT+TGG | + | chr3_3:85289421-85289440 | None:intergenic | 35.0% | |
| AGTCTCTTGATTCTGAACAA+GGG | - | chr3_3:85289767-85289786 | Msa0480110:CDS | 35.0% | |
| ! | GCAAGGGAACAAATTTTCAA+AGG | - | chr3_3:85289799-85289818 | Msa0480110:CDS | 35.0% |
| ! | CAAACTGATGATGATTCATG+TGG | - | chr3_3:85289895-85289914 | Msa0480110:CDS | 35.0% |
| !! | TTGTTGATGGTTCCAAATGA+TGG | + | chr3_3:85289331-85289350 | None:intergenic | 35.0% |
| AACCATCAACAACAAGTCTT+GGG | - | chr3_3:85289339-85289358 | Msa0480110:CDS | 35.0% | |
| AAGTGACATGAGTAAGATCT+TGG | + | chr3_3:85289421-85289440 | None:intergenic | 35.0% | |
| AGTCTCTTGATTCTGAACAA+GGG | - | chr3_3:85289767-85289786 | Msa0480110:CDS | 35.0% | |
| ! | GCAAGGGAACAAATTTTCAA+AGG | - | chr3_3:85289799-85289818 | Msa0480110:CDS | 35.0% |
| ! | CAAACTGATGATGATTCATG+TGG | - | chr3_3:85289895-85289914 | Msa0480110:CDS | 35.0% |
| ATCTTGCACTCACACAATGA+AGG | - | chr3_3:85289301-85289320 | Msa0480110:CDS | 40.0% | |
| !! | AATGAAGGAGTGCCATCATT+TGG | - | chr3_3:85289316-85289335 | Msa0480110:CDS | 40.0% |
| GAACCATCAACAACAAGTCT+TGG | - | chr3_3:85289338-85289357 | Msa0480110:CDS | 40.0% | |
| !! | TTCCCAAGACTTGTTGTTGA+TGG | + | chr3_3:85289344-85289363 | None:intergenic | 40.0% |
| ! | GGATACTTGGTGGATGTATA+TGG | - | chr3_3:85289392-85289411 | Msa0480110:CDS | 40.0% |
| TGACATGAGTAAGATCTTGG+AGG | + | chr3_3:85289418-85289437 | None:intergenic | 40.0% | |
| TTTAGGTCTGCTCAAGCTTT+AGG | - | chr3_3:85289454-85289473 | Msa0480110:CDS | 40.0% | |
| GAAGAGTTATCTCTGCTTGT+TGG | + | chr3_3:85289652-85289671 | None:intergenic | 40.0% | |
| GCAGAGATAACTCTTCTACT+TGG | - | chr3_3:85289656-85289675 | Msa0480110:CDS | 40.0% | |
| TCTTGTGTAGATGCAGTTGA+TGG | + | chr3_3:85289682-85289701 | None:intergenic | 40.0% | |
| GAGTCTCTTGATTCTGAACA+AGG | - | chr3_3:85289766-85289785 | Msa0480110:CDS | 40.0% | |
| ! | ACTGATGATGATTCATGTGG+TGG | - | chr3_3:85289898-85289917 | Msa0480110:CDS | 40.0% |
| ! | CTGATGATGATTCATGTGGT+GGG | - | chr3_3:85289899-85289918 | Msa0480110:CDS | 40.0% |
| ! | TGATGATGATTCATGTGGTG+GGG | - | chr3_3:85289900-85289919 | Msa0480110:CDS | 40.0% |
| GAAGAAATGGAAGCTGTCTT+TGG | + | chr3_3:85289949-85289968 | None:intergenic | 40.0% | |
| ! | TTTTCAGTCTGCAGAGTTTG+TGG | - | chr3_3:85290017-85290036 | Msa0480110:CDS | 40.0% |
| TAAGCCTGGAATAGAAGACT+TGG | - | chr3_3:85290047-85290066 | Msa0480110:CDS | 40.0% | |
| AGATCCAAGTCTTCTATTCC+AGG | + | chr3_3:85290054-85290073 | None:intergenic | 40.0% | |
| AAGACTTGGATCTTGAACTC+AGG | - | chr3_3:85290061-85290080 | Msa0480110:CDS | 40.0% | |
| ATCTTGCACTCACACAATGA+AGG | - | chr3_3:85289301-85289320 | Msa0480110:CDS | 40.0% | |
| !! | AATGAAGGAGTGCCATCATT+TGG | - | chr3_3:85289316-85289335 | Msa0480110:CDS | 40.0% |
| GAACCATCAACAACAAGTCT+TGG | - | chr3_3:85289338-85289357 | Msa0480110:CDS | 40.0% | |
| !! | TTCCCAAGACTTGTTGTTGA+TGG | + | chr3_3:85289344-85289363 | None:intergenic | 40.0% |
| ! | GGATACTTGGTGGATGTATA+TGG | - | chr3_3:85289392-85289411 | Msa0480110:CDS | 40.0% |
| TGACATGAGTAAGATCTTGG+AGG | + | chr3_3:85289418-85289437 | None:intergenic | 40.0% | |
| TTTAGGTCTGCTCAAGCTTT+AGG | - | chr3_3:85289454-85289473 | Msa0480110:CDS | 40.0% | |
| GAAGAGTTATCTCTGCTTGT+TGG | + | chr3_3:85289652-85289671 | None:intergenic | 40.0% | |
| GCAGAGATAACTCTTCTACT+TGG | - | chr3_3:85289656-85289675 | Msa0480110:CDS | 40.0% | |
| TCTTGTGTAGATGCAGTTGA+TGG | + | chr3_3:85289682-85289701 | None:intergenic | 40.0% | |
| GAGTCTCTTGATTCTGAACA+AGG | - | chr3_3:85289766-85289785 | Msa0480110:CDS | 40.0% | |
| ! | ACTGATGATGATTCATGTGG+TGG | - | chr3_3:85289898-85289917 | Msa0480110:CDS | 40.0% |
| ! | CTGATGATGATTCATGTGGT+GGG | - | chr3_3:85289899-85289918 | Msa0480110:CDS | 40.0% |
| ! | TGATGATGATTCATGTGGTG+GGG | - | chr3_3:85289900-85289919 | Msa0480110:CDS | 40.0% |
| GAAGAAATGGAAGCTGTCTT+TGG | + | chr3_3:85289949-85289968 | None:intergenic | 40.0% | |
| ! | TTTTCAGTCTGCAGAGTTTG+TGG | - | chr3_3:85290017-85290036 | Msa0480110:CDS | 40.0% |
| TAAGCCTGGAATAGAAGACT+TGG | - | chr3_3:85290047-85290066 | Msa0480110:CDS | 40.0% | |
| AGATCCAAGTCTTCTATTCC+AGG | + | chr3_3:85290054-85290073 | None:intergenic | 40.0% | |
| AAGACTTGGATCTTGAACTC+AGG | - | chr3_3:85290061-85290080 | Msa0480110:CDS | 40.0% | |
| ! | CTTTTGCAGAAGATGCAGCT+AGG | - | chr3_3:85289371-85289390 | Msa0480110:CDS | 45.0% |
| GAAGATGCAGCTAGGATACT+TGG | - | chr3_3:85289379-85289398 | Msa0480110:CDS | 45.0% | |
| TAGATGGGGGAATAACCACA+TGG | - | chr3_3:85289744-85289763 | Msa0480110:CDS | 45.0% | |
| CAGAATCAAGAGACTCCATG+TGG | + | chr3_3:85289762-85289781 | None:intergenic | 45.0% | |
| !! | AACAAGGGCTAGCTAATGCA+AGG | - | chr3_3:85289782-85289801 | Msa0480110:CDS | 45.0% |
| !! | ACAAGGGCTAGCTAATGCAA+GGG | - | chr3_3:85289783-85289802 | Msa0480110:CDS | 45.0% |
| GACAGGCAGTGAAGAAGAAA+TGG | + | chr3_3:85289962-85289981 | None:intergenic | 45.0% | |
| AAACATGGCTTCAGCAAGAC+AGG | + | chr3_3:85289979-85289998 | None:intergenic | 45.0% | |
| TTTGTGGTTGGAGTTAAGCC+TGG | - | chr3_3:85290033-85290052 | Msa0480110:CDS | 45.0% | |
| TTGGATCTTGAACTCAGGCT+TGG | - | chr3_3:85290066-85290085 | Msa0480110:CDS | 45.0% | |
| TGGATCTTGAACTCAGGCTT+GGG | - | chr3_3:85290067-85290086 | Msa0480110:CDS | 45.0% | |
| ! | CTTTTGCAGAAGATGCAGCT+AGG | - | chr3_3:85289371-85289390 | Msa0480110:CDS | 45.0% |
| GAAGATGCAGCTAGGATACT+TGG | - | chr3_3:85289379-85289398 | Msa0480110:CDS | 45.0% | |
| TAGATGGGGGAATAACCACA+TGG | - | chr3_3:85289744-85289763 | Msa0480110:CDS | 45.0% | |
| CAGAATCAAGAGACTCCATG+TGG | + | chr3_3:85289762-85289781 | None:intergenic | 45.0% | |
| !! | AACAAGGGCTAGCTAATGCA+AGG | - | chr3_3:85289782-85289801 | Msa0480110:CDS | 45.0% |
| !! | ACAAGGGCTAGCTAATGCAA+GGG | - | chr3_3:85289783-85289802 | Msa0480110:CDS | 45.0% |
| GACAGGCAGTGAAGAAGAAA+TGG | + | chr3_3:85289962-85289981 | None:intergenic | 45.0% | |
| AAACATGGCTTCAGCAAGAC+AGG | + | chr3_3:85289979-85289998 | None:intergenic | 45.0% | |
| TTTGTGGTTGGAGTTAAGCC+TGG | - | chr3_3:85290033-85290052 | Msa0480110:CDS | 45.0% | |
| TTGGATCTTGAACTCAGGCT+TGG | - | chr3_3:85290066-85290085 | Msa0480110:CDS | 45.0% | |
| TGGATCTTGAACTCAGGCTT+GGG | - | chr3_3:85290067-85290086 | Msa0480110:CDS | 45.0% | |
| GATGCAGCTAGGATACTTGG+TGG | - | chr3_3:85289382-85289401 | Msa0480110:CDS | 50.0% | |
| !! | AGGTCTGCTCAAGCTTTAGG+TGG | - | chr3_3:85289457-85289476 | Msa0480110:CDS | 50.0% |
| CAGTCTGCAGAGTTTGTGGT+TGG | - | chr3_3:85290021-85290040 | Msa0480110:CDS | 50.0% | |
| GATGCAGCTAGGATACTTGG+TGG | - | chr3_3:85289382-85289401 | Msa0480110:CDS | 50.0% | |
| !! | AGGTCTGCTCAAGCTTTAGG+TGG | - | chr3_3:85289457-85289476 | Msa0480110:CDS | 50.0% |
| CAGTCTGCAGAGTTTGTGGT+TGG | - | chr3_3:85290021-85290040 | Msa0480110:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85289259 | 85290110 | 85289259 | ID=Msa0480110;Name=Msa0480110 |
| chr3_3 | mRNA | 85289259 | 85290110 | 85289259 | ID=Msa0480110-mRNA-1;Parent=Msa0480110;Name=Msa0480110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|283 |
| chr3_3 | exon | 85289259 | 85290110 | 85289259 | ID=Msa0480110-mRNA-1:exon:24510;Parent=Msa0480110-mRNA-1 |
| chr3_3 | CDS | 85289259 | 85290110 | 85289259 | ID=Msa0480110-mRNA-1:cds;Parent=Msa0480110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
