AlfalfaGEDB | Msa0480110

M. sativa cultivar zhongmu-4 / Msa0480110

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0480110	XP_013460707.1	86.268	284	14	3	1	283	1	260	1.72e-176	497

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0480110	sp\|O80942\|ZFP10_ARATH	75.439	57	11	1	33	89	18	71	8.00e-23	98.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0480110	A0A072UZ72	86.268	284	14	3	1	283	1	260	8.24e-177	497

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0415890	Msa0480110	0.856604	2.875544e-62	-8.615850e-47
Msa0480110	Msa1106590	0.828676	7.877379e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0480110	MtrunA17_Chr3g0112181	86.268	284	14	3	1	283	1	260	1.59e-180	497
Msa0480110	MtrunA17_Chr5g0435711	44.561	285	86	14	8	283	11	232	6.75e-48	159
Msa0480110	MtrunA17_Chr4g0009461	65.060	83	16	2	33	102	36	118	5.05e-29	112
Msa0480110	MtrunA17_Chr5g0400571	71.930	57	15	1	33	89	59	114	4.75e-23	95.1
Msa0480110	MtrunA17_Chr2g0315591	49.398	83	39	1	10	89	2	84	2.66e-19	84.3
Msa0480110	MtrunA17_Chr1g0184381	80.952	42	8	0	49	90	29	70	9.90e-18	79.3
Msa0480110	MtrunA17_Chr7g0239441	70.000	50	15	0	55	104	37	86	8.96e-16	72.8
Msa0480110	MtrunA17_Chr4g0032111	62.500	48	18	0	54	101	20	67	1.43e-14	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0480110	AT2G37740.1	75.439	57	11	1	33	89	18	71	8.13e-24	98.6
Msa0480110	AT4G17810.2	69.091	55	17	0	30	84	19	73	1.36e-22	92.4
Msa0480110	AT4G17810.1	69.091	55	17	0	30	84	19	73	1.55e-22	92.8
Msa0480110	AT5G06070.1	74.545	55	13	1	35	88	32	86	2.86e-21	90.1
Msa0480110	AT3G23130.1	82.927	41	7	0	47	87	37	77	8.81e-18	80.1
Msa0480110	AT2G42410.2	78.049	41	9	0	48	88	40	80	4.24e-17	78.6
Msa0480110	AT2G42410.1	78.049	41	9	0	48	88	40	80	4.24e-17	78.6
Msa0480110	AT2G42410.3	78.049	41	9	0	48	88	66	106	4.86e-17	79.0
Msa0480110	AT3G09290.1	63.636	44	16	0	55	98	33	76	1.70e-12	64.7
Msa0480110	AT3G53820.1	68.571	35	11	0	55	89	19	53	5.91e-11	59.7

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Find 50 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCTATCATTCAAACA+TGG	0.662081	3_3:+85289356	None:intergenic
AAACATGGCTTCAGCAAGAC+AGG	0.470524	3_3:+85289371	None:intergenic
AACAAGGGCTAGCTAATGCA+AGG	0.555187	3_3:-85289565	Msa0480110:CDS
AACCATCAACAACAAGTCTT+GGG	0.510991	3_3:-85290008	Msa0480110:CDS
AAGACTTGGATCTTGAACTC+AGG	0.538252	3_3:-85289286	Msa0480110:CDS
AAGTGACATGAGTAAGATCT+TGG	0.483411	3_3:+85289929	None:intergenic
AATGAAGGAGTGCCATCATT+TGG	0.429411	3_3:-85290031	Msa0480110:CDS
AATGAAGTTCTAATTCATTA+TGG	0.338881	3_3:+85289813	None:intergenic
ACAAGGGCTAGCTAATGCAA+GGG	0.711358	3_3:-85289564	Msa0480110:CDS
ACTGATGATGATTCATGTGG+TGG	0.616045	3_3:-85289449	Msa0480110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAATCACTAAATATGATG+TGG	-	chr3_3:85289263-85289282	Msa0480110:CDS	30.0%
ACTTCTGTAAAAGAGAGTTT+AGG	-	chr3_3:85289437-85289456	Msa0480110:CDS	30.0%
GAAGAATATGAAGACATGTT+TGG	+	chr3_3:85289718-85289737	None:intergenic	30.0%
ATTCTTCTTCAATTAGATGG+GGG	-	chr3_3:85289731-85289750	Msa0480110:CDS	30.0%
TGTTGAAACAAGTTTGTCTA+TGG	-	chr3_3:85289840-85289859	Msa0480110:CDS	30.0%
GTTGAAACAAGTTTGTCTAT+GGG	-	chr3_3:85289841-85289860	Msa0480110:CDS	30.0%
AGGAATCACTAAATATGATG+TGG	-	chr3_3:85289263-85289282	Msa0480110:CDS	30.0%
ACTTCTGTAAAAGAGAGTTT+AGG	-	chr3_3:85289437-85289456	Msa0480110:CDS	30.0%
GAAGAATATGAAGACATGTT+TGG	+	chr3_3:85289718-85289737	None:intergenic	30.0%
ATTCTTCTTCAATTAGATGG+GGG	-	chr3_3:85289731-85289750	Msa0480110:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	85289259	85290110	85289259	ID=Msa0480110;Name=Msa0480110
chr3_3	mRNA	85289259	85290110	85289259	ID=Msa0480110-mRNA-1;Parent=Msa0480110;Name=Msa0480110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|283
chr3_3	exon	85289259	85290110	85289259	ID=Msa0480110-mRNA-1:exon:24510;Parent=Msa0480110-mRNA-1
chr3_3	CDS	85289259	85290110	85289259	ID=Msa0480110-mRNA-1:cds;Parent=Msa0480110-mRNA-1

Gene Sequence

>Msa0480110

ATGGAGGAATCACTAAATATGATGTGGATGAAAAGGAAACAAATCTTGCACTCACACAATGAAGGAGTGCCATCATTTGGAACCATCAACAACAAGTCTTGGGAAGAAAAAGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGATGTATATGGCCTCCAAGATCTTACTCATGTCACTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTTTAGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCTAAGCTCAAACAAAGTCTTAGCCACCATAATGAATTAGAACTTCATTCTCATCACAAAAATCATTGTAAGTTCTTCACTCTTCACTTAGATTGTTATCTAAACTTTTTACTAATTATTGTTCTAACTTATGGTACAGTTCCAACAAGCAGAGATAACTCTTCTACTTGGCCATCAACTGCATCTACACAAGAAAAGTGTTTTGAGCCAAACATGTCTTCATATTCTTCTTCAATTAGATGGGGGAATAACCACATGGAGTCTCTTGATTCTGAACAAGGGCTAGCTAATGCAAGGGAACAAATTTTCAAAGGTTATGGTTGTAATGATTATGTTGAAACAAGTTTGTCTATGGGACAAAATAATTCAATGTTTGGCCAAAAATTGCAAACTGATGATGATTCATGTGGTGGGGACAAAGACATAAGTTATAAAAGACCAAAGACAGCTTCCATTTCTTCTTCACTGCCTGTCTTGCTGAAGCCATGTTTGAATGATAGATGTTTAACTTTTCAGTCTGCAGAGTTTGTGGTTGGAGTTAAGCCTGGAATAGAAGACTTGGATCTTGAACTCAGGCTTGGGAAACTAACACAGAAAGTTTAG

Protein sequence

>Msa0480110

MEESLNMMWMKRKQILHSHNEGVPSFGTINNKSWEEKAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRAKLKQSLSHHNELELHSHHKNHCKFFTLHLDCYLNFLLIIVLTYGTVPTSRDNSSTWPSTASTQEKCFEPNMSSYSSSIRWGNNHMESLDSEQGLANAREQIFKGYGCNDYVETSLSMGQNNSMFGQKLQTDDDSCGGDKDISYKRPKTASISSSLPVLLKPCLNDRCLTFQSAEFVVGVKPGIEDLDLELRLGKLTQKV*