Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417390 | AES71324.2 | 96.992 | 399 | 12 | 0 | 1 | 399 | 4 | 402 | 0.0 | 808 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417390 | sp|P77806|YBDL_ECOLI | 40.365 | 384 | 227 | 2 | 13 | 395 | 3 | 385 | 1.73e-102 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417390 | G7J331 | 96.992 | 399 | 12 | 0 | 1 | 399 | 4 | 402 | 0.0 | 808 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0369980 | Msa0417390 | 0.937832 | 1.822485e-98 | -8.615850e-47 |
| Msa0417390 | Msa0509740 | 0.899600 | 1.688127e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417390 | MtrunA17_Chr3g0114831 | 96.992 | 399 | 12 | 0 | 1 | 399 | 410 | 808 | 0.0 | 808 |
| Msa0417390 | MtrunA17_Chr3g0114831 | 82.609 | 345 | 35 | 2 | 16 | 360 | 9 | 328 | 0.0 | 570 |
| Msa0417390 | MtrunA17_Chr3g0114811 | 85.455 | 385 | 56 | 0 | 15 | 399 | 61 | 445 | 0.0 | 707 |
| Msa0417390 | MtrunA17_Chr1g0195061 | 38.325 | 394 | 227 | 5 | 17 | 397 | 4 | 394 | 1.46e-82 | 258 |
| Msa0417390 | MtrunA17_Chr7g0267911 | 29.380 | 371 | 240 | 9 | 43 | 397 | 100 | 464 | 1.79e-47 | 168 |
| Msa0417390 | MtrunA17_Chr8g0382671 | 29.919 | 371 | 238 | 9 | 43 | 397 | 102 | 466 | 3.49e-47 | 167 |
| Msa0417390 | MtrunA17_Chr8g0360241 | 24.202 | 376 | 250 | 12 | 43 | 394 | 43 | 407 | 2.55e-22 | 97.8 |
| Msa0417390 | MtrunA17_Chr4g0004131 | 25.185 | 405 | 258 | 17 | 17 | 399 | 6 | 387 | 4.47e-21 | 94.0 |
| Msa0417390 | MtrunA17_Chr2g0324801 | 25.967 | 362 | 243 | 12 | 50 | 394 | 22 | 375 | 5.22e-21 | 94.0 |
| Msa0417390 | MtrunA17_Chr8g0389311 | 26.056 | 284 | 189 | 10 | 78 | 342 | 88 | 369 | 7.02e-14 | 72.8 |
| Msa0417390 | MtrunA17_Chr8g0389321 | 26.056 | 284 | 189 | 10 | 78 | 342 | 88 | 369 | 7.02e-14 | 72.8 |
| Msa0417390 | MtrunA17_Chr6g0462441 | 24.503 | 302 | 191 | 12 | 92 | 385 | 131 | 403 | 7.39e-14 | 72.8 |
| Msa0417390 | MtrunA17_Chr3g0135251 | 23.387 | 372 | 240 | 14 | 52 | 394 | 69 | 424 | 4.80e-13 | 70.5 |
| Msa0417390 | MtrunA17_Chr8g0387481 | 22.989 | 348 | 227 | 13 | 78 | 394 | 95 | 432 | 1.20e-12 | 69.3 |
| Msa0417390 | MtrunA17_Chr4g0054371 | 25.000 | 328 | 208 | 14 | 99 | 394 | 110 | 431 | 1.05e-11 | 66.2 |
| Msa0417390 | MtrunA17_Chr6g0475681 | 24.571 | 350 | 238 | 14 | 68 | 395 | 178 | 523 | 8.99e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417390 | AT1G77670.1 | 76.441 | 399 | 90 | 1 | 1 | 399 | 44 | 438 | 0.0 | 669 |
| Msa0417390 | AT2G22250.1 | 29.056 | 413 | 268 | 11 | 4 | 397 | 13 | 419 | 4.28e-53 | 182 |
| Msa0417390 | AT2G22250.3 | 29.056 | 413 | 268 | 11 | 4 | 397 | 60 | 466 | 1.27e-52 | 182 |
| Msa0417390 | AT2G22250.2 | 29.056 | 413 | 268 | 11 | 4 | 397 | 60 | 466 | 1.27e-52 | 182 |
| Msa0417390 | AT5G36160.1 | 25.600 | 375 | 246 | 14 | 43 | 394 | 45 | 409 | 2.19e-25 | 107 |
| Msa0417390 | AT4G28410.1 | 24.282 | 383 | 256 | 11 | 32 | 394 | 67 | 435 | 1.09e-22 | 99.8 |
| Msa0417390 | AT2G20610.1 | 22.572 | 381 | 261 | 13 | 34 | 394 | 67 | 433 | 2.65e-21 | 95.9 |
| Msa0417390 | AT5G53970.1 | 23.607 | 377 | 251 | 10 | 43 | 394 | 36 | 400 | 7.88e-21 | 94.0 |
| Msa0417390 | AT4G28410.2 | 25.551 | 227 | 163 | 4 | 32 | 256 | 67 | 289 | 1.14e-20 | 93.6 |
| Msa0417390 | AT4G28420.2 | 22.933 | 375 | 263 | 12 | 35 | 393 | 62 | 426 | 1.37e-19 | 90.5 |
| Msa0417390 | AT2G24850.1 | 25.890 | 309 | 207 | 12 | 102 | 394 | 115 | 417 | 2.43e-19 | 89.7 |
| Msa0417390 | AT4G23590.1 | 25.886 | 367 | 219 | 14 | 59 | 394 | 58 | 402 | 3.06e-19 | 89.4 |
| Msa0417390 | AT1G80360.3 | 22.874 | 341 | 236 | 10 | 34 | 360 | 24 | 351 | 1.01e-18 | 87.8 |
| Msa0417390 | AT1G80360.2 | 22.874 | 341 | 236 | 10 | 34 | 360 | 24 | 351 | 1.01e-18 | 87.8 |
| Msa0417390 | AT1G80360.4 | 22.874 | 341 | 236 | 10 | 34 | 360 | 24 | 351 | 1.01e-18 | 87.8 |
| Msa0417390 | AT1G80360.1 | 22.874 | 341 | 236 | 10 | 34 | 360 | 24 | 351 | 1.01e-18 | 87.8 |
| Msa0417390 | AT2G20610.2 | 22.034 | 354 | 247 | 12 | 34 | 367 | 67 | 411 | 1.06e-18 | 87.8 |
| Msa0417390 | AT4G28420.1 | 24.000 | 225 | 163 | 6 | 35 | 256 | 62 | 281 | 1.69e-18 | 87.0 |
| Msa0417390 | AT4G23600.1 | 22.905 | 358 | 241 | 11 | 59 | 394 | 58 | 402 | 6.13e-17 | 82.4 |
| Msa0417390 | AT4G37770.1 | 25.723 | 346 | 223 | 14 | 78 | 395 | 87 | 426 | 5.10e-15 | 77.0 |
| Msa0417390 | AT4G23600.2 | 23.885 | 314 | 198 | 12 | 106 | 394 | 1 | 298 | 5.76e-15 | 75.9 |
| Msa0417390 | AT4G23600.3 | 26.341 | 205 | 138 | 4 | 59 | 256 | 58 | 256 | 5.82e-15 | 76.3 |
| Msa0417390 | AT4G08040.1 | 26.686 | 341 | 221 | 13 | 78 | 394 | 85 | 420 | 1.54e-14 | 75.5 |
| Msa0417390 | AT3G49700.1 | 23.989 | 371 | 239 | 15 | 53 | 395 | 71 | 426 | 4.27e-13 | 70.9 |
| Msa0417390 | AT5G51690.2 | 22.941 | 340 | 236 | 11 | 78 | 395 | 30 | 365 | 5.05e-13 | 70.5 |
| Msa0417390 | AT5G51690.1 | 22.941 | 340 | 236 | 11 | 78 | 395 | 153 | 488 | 9.75e-13 | 70.1 |
| Msa0417390 | AT5G10330.7 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 8.58e-12 | 65.9 |
| Msa0417390 | AT5G10330.6 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 8.58e-12 | 65.9 |
| Msa0417390 | AT5G10330.5 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 8.58e-12 | 65.9 |
| Msa0417390 | AT5G10330.4 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 8.58e-12 | 65.9 |
| Msa0417390 | AT1G71920.5 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 8.58e-12 | 65.9 |
| Msa0417390 | AT1G71920.4 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 8.58e-12 | 65.9 |
| Msa0417390 | AT5G10330.3 | 23.203 | 306 | 202 | 12 | 86 | 385 | 73 | 351 | 1.31e-11 | 65.9 |
| Msa0417390 | AT5G10330.8 | 23.203 | 306 | 202 | 12 | 86 | 385 | 73 | 351 | 1.31e-11 | 65.9 |
| Msa0417390 | AT1G71920.3 | 23.203 | 306 | 202 | 12 | 86 | 385 | 73 | 351 | 1.31e-11 | 65.9 |
| Msa0417390 | AT2G22810.1 | 24.561 | 342 | 231 | 12 | 78 | 394 | 87 | 426 | 1.51e-11 | 66.2 |
| Msa0417390 | AT5G10330.2 | 23.667 | 300 | 196 | 12 | 92 | 385 | 134 | 406 | 1.58e-11 | 65.9 |
| Msa0417390 | AT5G10330.1 | 23.667 | 300 | 196 | 12 | 92 | 385 | 134 | 406 | 1.58e-11 | 65.9 |
| Msa0417390 | AT1G71920.6 | 23.667 | 300 | 196 | 12 | 92 | 385 | 134 | 406 | 1.58e-11 | 65.9 |
| Msa0417390 | AT1G71920.2 | 23.667 | 300 | 196 | 12 | 92 | 385 | 134 | 406 | 1.58e-11 | 65.9 |
| Msa0417390 | AT1G71920.1 | 23.667 | 300 | 196 | 12 | 92 | 385 | 132 | 404 | 1.61e-11 | 65.9 |
Find 120 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCTTCCTTTACAAATTC+TGG | 0.166218 | 3_2:+64543361 | None:intergenic |
| CACATGTCTACAGCAAATTT+TGG | 0.190638 | 3_2:-64545429 | None:intergenic |
| GTAACAGTAATTTCCTTATC+AGG | 0.190896 | 3_2:+64543226 | None:intergenic |
| ACTAGATTCTTCCCCTCTTC+TGG | 0.194253 | 3_2:+64542422 | None:intergenic |
| TATCGCAAAGAGAGCTATTT+TGG | 0.198899 | 3_2:-64542612 | Msa0417390:CDS |
| CTTGCAGATCACACCCCTTT+TGG | 0.237315 | 3_2:-64542530 | Msa0417390:CDS |
| AATCAGTATGCAAGGGGTTT+TGG | 0.252107 | 3_2:-64543313 | Msa0417390:CDS |
| CCATCAAAACAACGACATTC+AGG | 0.272714 | 3_2:+64542221 | None:intergenic |
| GCAATCGCTGCAACTGTATT+AGG | 0.275629 | 3_2:-64543187 | Msa0417390:CDS |
| TTCAAGTAAAATACACTTAA+AGG | 0.276934 | 3_2:+64542446 | None:intergenic |
| CAGGGCTTTCCCAACTTTGA+TGG | 0.277986 | 3_2:-64543385 | Msa0417390:CDS |
| AATAATAAAATACAATAATA+TGG | 0.302946 | 3_2:-64545365 | Msa0417390:five_prime_UTR |
| TTGCATTGAGAATGATGTTC+TGG | 0.306322 | 3_2:-64542921 | Msa0417390:CDS |
| AAGCTGCAATTCAAGCTATC+AGG | 0.308373 | 3_2:-64543345 | Msa0417390:CDS |
| GCACCATAAGAATCATAAAA+AGG | 0.324575 | 3_2:+64543127 | None:intergenic |
| GGGAAGTCATTCTCCTTAAC+GGG | 0.341836 | 3_2:-64542794 | Msa0417390:CDS |
| GAAAATACATCATCCTTTGC+AGG | 0.348131 | 3_2:-64545249 | Msa0417390:intron |
| TCATAAGTTGGCATTCGATA+TGG | 0.360612 | 3_2:-64542879 | Msa0417390:CDS |
| ACGGTGACAATGAACTCATT+AGG | 0.367287 | 3_2:-64542815 | Msa0417390:CDS |
| CAAGGACGAGGAAACTATTA+AGG | 0.370324 | 3_2:-64542384 | Msa0417390:CDS |
| GAGAGATTCAAGAAAGATAC+TGG | 0.383980 | 3_2:-64543262 | Msa0417390:CDS |
| ACCGTCCTCTCGAACATTCC+AGG | 0.392162 | 3_2:+64542833 | None:intergenic |
| ATTGAAGGCTGTTGGGTTCA+AGG | 0.395573 | 3_2:-64542582 | Msa0417390:CDS |
| TGATGGCAAGCATACTCATT+TGG | 0.396859 | 3_2:+64543431 | None:intergenic |
| AATTACACGAATCAAACCTT+TGG | 0.397311 | 3_2:+64542260 | None:intergenic |
| GTCGACTTCAACTCATCAAT+CGG | 0.398128 | 3_2:+64543040 | None:intergenic |
| ATTTCAATTGCTACTTTGCC+TGG | 0.404821 | 3_2:-64542851 | Msa0417390:CDS |
| GAAAACGAAGATTGGAGCTC+TGG | 0.405064 | 3_2:+64545310 | None:intergenic |
| TGGAGCTATAAACCTTGGTC+AGG | 0.415915 | 3_2:-64543404 | Msa0417390:CDS |
| TTTCCCATCCTTTGCAGTGT+GGG | 0.418735 | 3_2:-64542691 | Msa0417390:CDS |
| AGCTCCACATAGTAAGAATC+TGG | 0.422650 | 3_2:+64542647 | None:intergenic |
| AAGGAAATTACTGTTACATC+TGG | 0.429368 | 3_2:-64543220 | Msa0417390:CDS |
| CGGTGACAATGAACTCATTA+GGG | 0.433243 | 3_2:-64542814 | Msa0417390:CDS |
| TCAATCGGGACATCGAAATC+TGG | 0.437458 | 3_2:+64543055 | None:intergenic |
| ATTACACGAATCAAACCTTT+GGG | 0.440457 | 3_2:+64542261 | None:intergenic |
| AGGGAAGTCATTCTCCTTAA+CGG | 0.443160 | 3_2:-64542795 | Msa0417390:CDS |
| GTGAGGGGTATTTATAAGAA+TGG | 0.445966 | 3_2:+64542997 | None:intergenic |
| GCAATGACAATGTTGAGATC+TGG | 0.447498 | 3_2:+64543286 | None:intergenic |
| TCCAACCTTCCACCCCGTTA+AGG | 0.449140 | 3_2:+64542781 | None:intergenic |
| CAGCCCCACACTGCAAAGGA+TGG | 0.450947 | 3_2:+64542687 | None:intergenic |
| TCCTTAACGGGGTGGAAGGT+TGG | 0.453825 | 3_2:-64542782 | Msa0417390:CDS |
| TTATGGTGCCACTTTATCCA+TGG | 0.461803 | 3_2:-64543113 | Msa0417390:CDS |
| AATACCCCTCACAATCCTAC+TGG | 0.467702 | 3_2:-64542986 | Msa0417390:CDS |
| GTTGAAGGATTGAAGGCTGT+TGG | 0.468862 | 3_2:-64542590 | Msa0417390:CDS |
| TTGAAGGATTGAAGGCTGTT+GGG | 0.469420 | 3_2:-64542589 | Msa0417390:CDS |
| CTTAATGTGGGGAGTGCGAC+AGG | 0.472336 | 3_2:-64542738 | Msa0417390:CDS |
| AAATTCTGGACCATCAAAGT+TGG | 0.480265 | 3_2:+64543375 | None:intergenic |
| CTTACTATGTGGAGCTAAAG+AGG | 0.481335 | 3_2:-64542640 | Msa0417390:CDS |
| GATGGCAAGCATACTCATTT+GGG | 0.490591 | 3_2:+64543432 | None:intergenic |
| GGTGCCACTTTATCCATGGC+TGG | 0.493054 | 3_2:-64543109 | Msa0417390:CDS |
| TAACGGGGTGGAAGGTTGGA+TGG | 0.495813 | 3_2:-64542778 | Msa0417390:CDS |
| GCCTGGAATGTTCGAGAGGA+CGG | 0.502694 | 3_2:-64542834 | Msa0417390:CDS |
| AATTCTGGACCATCAAAGTT+GGG | 0.503111 | 3_2:+64543376 | None:intergenic |
| TGATGAAGTGTATCATAAGT+TGG | 0.503345 | 3_2:-64542891 | Msa0417390:CDS |
| AAGAGGGGAAGAATCTAGTC+AGG | 0.503919 | 3_2:-64542418 | Msa0417390:CDS |
| ATAAAATACAATAATATGGC+AGG | 0.504040 | 3_2:-64545361 | Msa0417390:five_prime_UTR |
| TTCCCATCCTTTGCAGTGTG+GGG | 0.508720 | 3_2:-64542690 | Msa0417390:CDS |
| CATCAAAACAACGACATTCA+GGG | 0.510144 | 3_2:+64542222 | None:intergenic |
| CATTAAGTGTGGAGGCGCTA+TGG | 0.515779 | 3_2:+64542754 | None:intergenic |
| AAACCTTTGGGATACTAGAA+AGG | 0.517804 | 3_2:+64542273 | None:intergenic |
| AGCACCAGATTCTTACTATG+TGG | 0.518355 | 3_2:-64542651 | Msa0417390:CDS |
| CGCACCAGCCATGGATAAAG+TGG | 0.520207 | 3_2:+64543105 | None:intergenic |
| GTAGAGTGGAAAACGAAGAT+TGG | 0.524783 | 3_2:+64545302 | None:intergenic |
| TAACAGTAATTTCCTTATCA+GGG | 0.528262 | 3_2:+64543227 | None:intergenic |
| ATCTTTCCAGTAGGATTGTG+AGG | 0.528488 | 3_2:+64542980 | None:intergenic |
| ACTAATTGTAGACCCTGATA+AGG | 0.530936 | 3_2:-64543239 | Msa0417390:CDS |
| GGCTCGAGTATTCTTTGAGA+TGG | 0.533306 | 3_2:+64543018 | None:intergenic |
| CTATTAAGGCTGCTGTTGAA+AGG | 0.533649 | 3_2:-64542370 | Msa0417390:CDS |
| GTTTACTTTCTGCAAGGACG+AGG | 0.538788 | 3_2:-64542396 | Msa0417390:CDS |
| ATTTCCCATCCTTTGCAGTG+TGG | 0.540019 | 3_2:-64542692 | Msa0417390:CDS |
| TAGCGCCTCCACACTTAATG+TGG | 0.544673 | 3_2:-64542751 | Msa0417390:CDS |
| TTCAAGGTATTCCCGTCCAA+TGG | 0.546743 | 3_2:-64542566 | Msa0417390:CDS |
| GCTGCAGCCCCACACTGCAA+AGG | 0.548860 | 3_2:+64542683 | None:intergenic |
| GCAATTCAAGCTATCAGGGA+TGG | 0.556773 | 3_2:-64543340 | Msa0417390:CDS |
| ATTCTCCTTAACGGGGTGGA+AGG | 0.557345 | 3_2:-64542786 | Msa0417390:CDS |
| AACGGGGTGGAAGGTTGGAT+GGG | 0.562198 | 3_2:-64542777 | Msa0417390:CDS |
| TGATGGTCCAGAATTTGTAA+AGG | 0.563207 | 3_2:-64543368 | Msa0417390:CDS |
| AGCTGCAATTCAAGCTATCA+GGG | 0.564260 | 3_2:-64543344 | Msa0417390:CDS |
| GGCTGCTGTTGAAAGGATGA+AGG | 0.567990 | 3_2:-64542363 | Msa0417390:CDS |
| AAACAGAATAACCTCATCAC+CGG | 0.568184 | 3_2:+64543153 | None:intergenic |
| GTGTTTGTTAGGTTGCAAAA+CGG | 0.570636 | 3_2:-64543483 | Msa0417390:intron |
| AGCCCCACACTGCAAAGGAT+GGG | 0.572186 | 3_2:+64542688 | None:intergenic |
| ATGGGAATAATCAGTATGCA+AGG | 0.573797 | 3_2:-64543321 | Msa0417390:CDS |
| AAAACGAAGATTGGAGCTCT+GGG | 0.574784 | 3_2:+64545311 | None:intergenic |
| CAATTCAAGCTATCAGGGAT+GGG | 0.575114 | 3_2:-64543339 | Msa0417390:CDS |
| CGAGTGAACATCTTTCCAGT+AGG | 0.577547 | 3_2:+64542971 | None:intergenic |
| AGTCAGGTTTACTTTCTGCA+AGG | 0.577645 | 3_2:-64542402 | Msa0417390:CDS |
| TCGACTTCAACTCATCAATC+GGG | 0.583078 | 3_2:+64543041 | None:intergenic |
| AGTATGCTTGCCATCACACA+TGG | 0.583773 | 3_2:-64543424 | Msa0417390:CDS |
| AGCGCCTCCACACTTAATGT+GGG | 0.584458 | 3_2:-64542750 | Msa0417390:CDS |
| GTATTAGGATTAATAAATCC+CGG | 0.588469 | 3_2:-64543172 | Msa0417390:CDS |
| ATTAATAAATCCCGGTGATG+AGG | 0.595433 | 3_2:-64543164 | Msa0417390:CDS |
| TCTTTCCAGTAGGATTGTGA+GGG | 0.595542 | 3_2:+64542981 | None:intergenic |
| TTTCCTTTCTAGTATCCCAA+AGG | 0.600055 | 3_2:-64542276 | Msa0417390:three_prime_UTR |
| CGCACTCCCCACATTAAGTG+TGG | 0.602087 | 3_2:+64542743 | None:intergenic |
| TTACTATGTGGAGCTAAAGA+GGG | 0.603840 | 3_2:-64542639 | Msa0417390:CDS |
| ATCGGGACATCGAAATCTGG+AGG | 0.605759 | 3_2:+64543058 | None:intergenic |
| AAAAGAGGATGAACCTGCAA+AGG | 0.605913 | 3_2:+64545236 | None:intergenic |
| GTTTATAGCTCCATGTGTGA+TGG | 0.610496 | 3_2:+64543414 | None:intergenic |
| TTGTGAATATCTAATTAAGG+AGG | 0.616139 | 3_2:-64542486 | Msa0417390:CDS |
| ACACATGGAGCTATAAACCT+TGG | 0.620022 | 3_2:-64543409 | Msa0417390:CDS |
| AATTAAGGAGGTCGGTGTGG+CGG | 0.620432 | 3_2:-64542474 | Msa0417390:CDS |
| TTTCGGTGGACATGGTAGAG+TGG | 0.622964 | 3_2:+64545288 | None:intergenic |
| TGGAAAGATGTTCACTCGAG+AGG | 0.626679 | 3_2:-64542966 | Msa0417390:CDS |
| ATCAAAACAACGACATTCAG+GGG | 0.632415 | 3_2:+64542223 | None:intergenic |
| TGGGAATAATCAGTATGCAA+GGG | 0.635598 | 3_2:-64543320 | Msa0417390:CDS |
| AACAGAATAACCTCATCACC+GGG | 0.636868 | 3_2:+64543154 | None:intergenic |
| CTTTGCCTGGAATGTTCGAG+AGG | 0.637690 | 3_2:-64542838 | Msa0417390:CDS |
| ACTCCCCACATTAAGTGTGG+AGG | 0.638165 | 3_2:+64542746 | None:intergenic |
| GGGAATAATCAGTATGCAAG+GGG | 0.638567 | 3_2:-64543319 | Msa0417390:CDS |
| TCTAATTAAGGAGGTCGGTG+TGG | 0.640787 | 3_2:-64542477 | Msa0417390:CDS |
| TTTACTTGAATCCAGAAGAG+GGG | 0.646076 | 3_2:-64542433 | Msa0417390:CDS |
| GGAGCTATAAACCTTGGTCA+GGG | 0.653137 | 3_2:-64543403 | Msa0417390:CDS |
| AGTTGGGAAAGCCCTGACCA+AGG | 0.656564 | 3_2:+64543392 | None:intergenic |
| AGTCATTCTCCTTAACGGGG+TGG | 0.665949 | 3_2:-64542790 | Msa0417390:CDS |
| TCGGGACATCGAAATCTGGA+GGG | 0.670723 | 3_2:+64543059 | None:intergenic |
| GCGCCTCCACACTTAATGTG+GGG | 0.671863 | 3_2:-64542749 | Msa0417390:CDS |
| CTTTCCAGTAGGATTGTGAG+GGG | 0.686125 | 3_2:+64542982 | None:intergenic |
| GAATATCTAATTAAGGAGGT+CGG | 0.694506 | 3_2:-64542482 | Msa0417390:CDS |
| GGAAGTCATTCTCCTTAACG+GGG | 0.699032 | 3_2:-64542793 | Msa0417390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTATTTTATTATTTGA+TGG | + | chr3_2:64542132-64542151 | None:intergenic | 10.0% |
| !!! | ATATTTTCATTTTTAGCTTT+GGG | - | chr3_2:64542436-64542455 | Msa0417390:CDS | 15.0% |
| !! | AATATTTAAAAATGACCTTA+TGG | + | chr3_2:64543235-64543254 | None:intergenic | 15.0% |
| !!! | ATTTTGTGAATATCTAATTA+AGG | - | chr3_2:64545011-64545030 | Msa0417390:intron | 15.0% |
| !! | ATAAAATACAATAATATGGC+AGG | - | chr3_2:64542139-64542158 | Msa0417390:three_prime_UTR | 20.0% |
| !!! | CATATTTTCATTTTTAGCTT+TGG | - | chr3_2:64542435-64542454 | Msa0417390:CDS | 20.0% |
| !!! | TATTTTCATTTTTAGCTTTG+GGG | - | chr3_2:64542437-64542456 | Msa0417390:CDS | 20.0% |
| !! | AACAAATATCTTATGAGAAA+AGG | - | chr3_2:64542974-64542993 | Msa0417390:CDS | 20.0% |
| !!! | TTTTTTTTTTTATGGAGACT+TGG | - | chr3_2:64543013-64543032 | Msa0417390:CDS | 20.0% |
| !!! | AATTTGAAATTGGAAATGAA+AGG | - | chr3_2:64543124-64543143 | Msa0417390:CDS | 20.0% |
| !! | TTCAAGTAAAATACACTTAA+AGG | + | chr3_2:64545057-64545076 | None:intergenic | 20.0% |
| ! | TGTAAAAGAAACAGTTACAT+AGG | + | chr3_2:64542417-64542436 | None:intergenic | 25.0% |
| !!! | ATTTTCATTTTTAGCTTTGG+GGG | - | chr3_2:64542438-64542457 | Msa0417390:CDS | 25.0% |
| ! | AATGAAAGCAAATAAACAGT+AGG | + | chr3_2:64542480-64542499 | None:intergenic | 25.0% |
| !!! | GCAAATGTTTTTTTATGCTT+CGG | - | chr3_2:64543096-64543115 | Msa0417390:CDS | 25.0% |
| ! | AGTTGAACTTGAATTATAGA+TGG | + | chr3_2:64543305-64543324 | None:intergenic | 25.0% |
| ! | TAAACAATTACTATGTGTTC+TGG | + | chr3_2:64543639-64543658 | None:intergenic | 25.0% |
| ! | TTCATATTTCATATTTCCTC+TGG | - | chr3_2:64543765-64543784 | Msa0417390:intron | 25.0% |
| ! | GATAAGATAAACAAGTACTA+AGG | + | chr3_2:64543973-64543992 | None:intergenic | 25.0% |
| ! | TAACAGTAATTTCCTTATCA+GGG | + | chr3_2:64544276-64544295 | None:intergenic | 25.0% |
| ! | GTATTAGGATTAATAAATCC+CGG | - | chr3_2:64544328-64544347 | Msa0417390:intron | 25.0% |
| ! | TTGTGAATATCTAATTAAGG+AGG | - | chr3_2:64545014-64545033 | Msa0417390:intron | 25.0% |
| AGGAATTCAAAAGAGAAAAG+AGG | + | chr3_2:64542282-64542301 | None:intergenic | 30.0% | |
| ATAAACAGTAGGTCAAATTG+AGG | + | chr3_2:64542469-64542488 | None:intergenic | 30.0% | |
| AATTGCATTGTGGTAAATGA+TGG | - | chr3_2:64542529-64542548 | Msa0417390:CDS | 30.0% | |
| ! | AATTGGTTTAGTACGAAACT+AGG | - | chr3_2:64542636-64542655 | Msa0417390:CDS | 30.0% |
| !! | TGAGTTTGATTTGAGATTCT+TGG | + | chr3_2:64542850-64542869 | None:intergenic | 30.0% |
| AGTTCATCTCTCTTTCTATA+GGG | + | chr3_2:64542914-64542933 | None:intergenic | 30.0% | |
| TAGTTCATCTCTCTTTCTAT+AGG | + | chr3_2:64542915-64542934 | None:intergenic | 30.0% | |
| !!! | AATGTTTTTTTATGCTTCGG+TGG | - | chr3_2:64543099-64543118 | Msa0417390:CDS | 30.0% |
| GAAATGAAAGGAAAGAGTAA+AGG | - | chr3_2:64543136-64543155 | Msa0417390:CDS | 30.0% | |
| AGTTAAACTTTCTACTTCCT+AGG | - | chr3_2:64543178-64543197 | Msa0417390:CDS | 30.0% | |
| !!! | TTCCTAGGTTTTTTAAGAAG+AGG | - | chr3_2:64543193-64543212 | Msa0417390:CDS | 30.0% |
| TTCCTCTTCTTAAAAAACCT+AGG | + | chr3_2:64543198-64543217 | None:intergenic | 30.0% | |
| GACAATTATTCTGTTGGATT+TGG | + | chr3_2:64543383-64543402 | None:intergenic | 30.0% | |
| TGATTCGACAATTATTCTGT+TGG | + | chr3_2:64543389-64543408 | None:intergenic | 30.0% | |
| ATTTCGAACTAAATTCGAGT+TGG | - | chr3_2:64543410-64543429 | Msa0417390:CDS | 30.0% | |
| ATTTCATATTTCCTCTGGTT+TGG | - | chr3_2:64543770-64543789 | Msa0417390:intron | 30.0% | |
| ! | CATCGACATTGGTAATAATA+TGG | + | chr3_2:64543910-64543929 | None:intergenic | 30.0% |
| AATTAAGCCATGTGTTTGTT+AGG | - | chr3_2:64544006-64544025 | Msa0417390:intron | 30.0% | |
| GTAACAGTAATTTCCTTATC+AGG | + | chr3_2:64544277-64544296 | None:intergenic | 30.0% | |
| AAGGAAATTACTGTTACATC+TGG | - | chr3_2:64544280-64544299 | Msa0417390:intron | 30.0% | |
| ! | GCTCCTTTTTATGATTCTTA+TGG | - | chr3_2:64544370-64544389 | Msa0417390:intron | 30.0% |
| GCACCATAAGAATCATAAAA+AGG | + | chr3_2:64544376-64544395 | None:intergenic | 30.0% | |
| TGATGAAGTGTATCATAAGT+TGG | - | chr3_2:64544609-64544628 | Msa0417390:intron | 30.0% | |
| !!! | TATTTTGGTTGAAGGATTGA+AGG | - | chr3_2:64544903-64544922 | Msa0417390:intron | 30.0% |
| ! | ATCATTTTCATGTCCAAAAG+GGG | + | chr3_2:64544986-64545005 | None:intergenic | 30.0% |
| ! | CATCATTTTCATGTCCAAAA+GGG | + | chr3_2:64544987-64545006 | None:intergenic | 30.0% |
| ! | ACATCATTTTCATGTCCAAA+AGG | + | chr3_2:64544988-64545007 | None:intergenic | 30.0% |
| GAATATCTAATTAAGGAGGT+CGG | - | chr3_2:64545018-64545037 | Msa0417390:intron | 30.0% | |
| ! | ATTTTACTTGAATCCAGAAG+AGG | - | chr3_2:64545065-64545084 | Msa0417390:intron | 30.0% |
| ! | TTTTACTTGAATCCAGAAGA+GGG | - | chr3_2:64545066-64545085 | Msa0417390:intron | 30.0% |
| ATTACACGAATCAAACCTTT+GGG | + | chr3_2:64545242-64545261 | None:intergenic | 30.0% | |
| AATTACACGAATCAAACCTT+TGG | + | chr3_2:64545243-64545262 | None:intergenic | 30.0% | |
| ! | ATGATGTATTTTCTCAGAGG+TGG | + | chr3_2:64542244-64542263 | None:intergenic | 35.0% |
| ! | AGGATGATGTATTTTCTCAG+AGG | + | chr3_2:64542247-64542266 | None:intergenic | 35.0% |
| GAAAATACATCATCCTTTGC+AGG | - | chr3_2:64542251-64542270 | Msa0417390:three_prime_UTR | 35.0% | |
| ! | TCCTTTCACCTTACACTTTT+CGG | - | chr3_2:64542298-64542317 | Msa0417390:three_prime_UTR | 35.0% |
| ! | AAATGGATCCGAAAAGTGTA+AGG | + | chr3_2:64542309-64542328 | None:intergenic | 35.0% |
| GATAGCATAGCAGTAGTAAA+TGG | + | chr3_2:64542326-64542345 | None:intergenic | 35.0% | |
| CGCTCTTTATAATTGCATTG+TGG | - | chr3_2:64542519-64542538 | Msa0417390:CDS | 35.0% | |
| TGGTAAATGATGGTTTCTGT+AGG | - | chr3_2:64542539-64542558 | Msa0417390:CDS | 35.0% | |
| GGTAAATGATGGTTTCTGTA+GGG | - | chr3_2:64542540-64542559 | Msa0417390:CDS | 35.0% | |
| !!! | CTCTTTTTTTAGCTCGAGTT+CGG | - | chr3_2:64542676-64542695 | Msa0417390:CDS | 35.0% |
| ! | TTTAAAGTTCGCGAACTGTT+TGG | - | chr3_2:64542703-64542722 | Msa0417390:CDS | 35.0% |
| TTGAGATTCTTGGATTCCAA+TGG | + | chr3_2:64542840-64542859 | None:intergenic | 35.0% | |
| ATACCATCATCATACCTCAA+AGG | - | chr3_2:64543070-64543089 | Msa0417390:CDS | 35.0% | |
| AAAACATTTGCTCTCCTTTG+AGG | + | chr3_2:64543087-64543106 | None:intergenic | 35.0% | |
| ! | TTCGGTGGAGAATTTGAAAT+TGG | - | chr3_2:64543114-64543133 | Msa0417390:CDS | 35.0% |
| ACTGAAACGTTTAAGCCATA+AGG | - | chr3_2:64543217-64543236 | Msa0417390:CDS | 35.0% | |
| !! | GAACTAAATTCGAGTTGGTT+CGG | - | chr3_2:64543415-64543434 | Msa0417390:CDS | 35.0% |
| ! | AATTACTATGTGTTCTGGAC+TGG | + | chr3_2:64543634-64543653 | None:intergenic | 35.0% |
| TATTACCAATGTCGATGTGT+TGG | - | chr3_2:64543913-64543932 | Msa0417390:intron | 35.0% | |
| TTTGCAACCTAACAAACACA+TGG | + | chr3_2:64544016-64544035 | None:intergenic | 35.0% | |
| ! | GTGTTTGTTAGGTTGCAAAA+CGG | - | chr3_2:64544017-64544036 | Msa0417390:intron | 35.0% |
| AATTCTGGACCATCAAAGTT+GGG | + | chr3_2:64544127-64544146 | None:intergenic | 35.0% | |
| AAATTCTGGACCATCAAAGT+TGG | + | chr3_2:64544128-64544147 | None:intergenic | 35.0% | |
| TGATGGTCCAGAATTTGTAA+AGG | - | chr3_2:64544132-64544151 | Msa0417390:intron | 35.0% | |
| ATGGGAATAATCAGTATGCA+AGG | - | chr3_2:64544179-64544198 | Msa0417390:intron | 35.0% | |
| TGGGAATAATCAGTATGCAA+GGG | - | chr3_2:64544180-64544199 | Msa0417390:intron | 35.0% | |
| GAGAGATTCAAGAAAGATAC+TGG | - | chr3_2:64544238-64544257 | Msa0417390:intron | 35.0% | |
| ACTAATTGTAGACCCTGATA+AGG | - | chr3_2:64544261-64544280 | Msa0417390:intron | 35.0% | |
| ATTAATAAATCCCGGTGATG+AGG | - | chr3_2:64544336-64544355 | Msa0417390:intron | 35.0% | |
| AAACAGAATAACCTCATCAC+CGG | + | chr3_2:64544350-64544369 | None:intergenic | 35.0% | |
| !! | GTGAGGGGTATTTATAAGAA+TGG | + | chr3_2:64544506-64544525 | None:intergenic | 35.0% |
| TTGCATTGAGAATGATGTTC+TGG | - | chr3_2:64544579-64544598 | Msa0417390:intron | 35.0% | |
| ! | TCATAAGTTGGCATTCGATA+TGG | - | chr3_2:64544621-64544640 | Msa0417390:intron | 35.0% |
| !! | ATTTCAATTGCTACTTTGCC+TGG | - | chr3_2:64544649-64544668 | Msa0417390:intron | 35.0% |
| TTACTATGTGGAGCTAAAGA+GGG | - | chr3_2:64544861-64544880 | Msa0417390:intron | 35.0% | |
| ! | TATCGCAAAGAGAGCTATTT+TGG | - | chr3_2:64544888-64544907 | Msa0417390:intron | 35.0% |
| !!! | AAGAGAGCTATTTTGGTTGA+AGG | - | chr3_2:64544895-64544914 | Msa0417390:intron | 35.0% |
| ACAAAAAAGGTTCCATTGGA+CGG | + | chr3_2:64544949-64544968 | None:intergenic | 35.0% | |
| AAGCACAAAAAAGGTTCCAT+TGG | + | chr3_2:64544953-64544972 | None:intergenic | 35.0% | |
| TTTACTTGAATCCAGAAGAG+GGG | - | chr3_2:64545067-64545086 | Msa0417390:intron | 35.0% | |
| ! | TTTCCTTTCTAGTATCCCAA+AGG | - | chr3_2:64545224-64545243 | Msa0417390:intron | 35.0% |
| !! | AAACCTTTGGGATACTAGAA+AGG | + | chr3_2:64545230-64545249 | None:intergenic | 35.0% |
| ATCAAAACAACGACATTCAG+GGG | + | chr3_2:64545280-64545299 | None:intergenic | 35.0% | |
| CATCAAAACAACGACATTCA+GGG | + | chr3_2:64545281-64545300 | None:intergenic | 35.0% | |
| !!! | CTGAATGTCGTTGTTTTGAT+GGG | - | chr3_2:64545280-64545299 | Msa0417390:CDS | 35.0% |
| AAAACGAAGATTGGAGCTCT+GGG | + | chr3_2:64542192-64542211 | None:intergenic | 40.0% | |
| GTAGAGTGGAAAACGAAGAT+TGG | + | chr3_2:64542201-64542220 | None:intergenic | 40.0% | |
| ! | CTCAGAGGTGGTTTCATTTT+CGG | + | chr3_2:64542232-64542251 | None:intergenic | 40.0% |
| AAAAGAGGATGAACCTGCAA+AGG | + | chr3_2:64542267-64542286 | None:intergenic | 40.0% | |
| ! | TCCGAAAAGTGTAAGGTGAA+AGG | + | chr3_2:64542302-64542321 | None:intergenic | 40.0% |
| ! | GAGCTCGACTCGATAATAAT+TGG | - | chr3_2:64542619-64542638 | Msa0417390:CDS | 40.0% |
| ! | TCCAATGGTAGTGTAGCATA+GGG | + | chr3_2:64542825-64542844 | None:intergenic | 40.0% |
| ! | TTCCAATGGTAGTGTAGCAT+AGG | + | chr3_2:64542826-64542845 | None:intergenic | 40.0% |
| !! | TCTCCTTTGAGGTATGATGA+TGG | + | chr3_2:64543076-64543095 | None:intergenic | 40.0% |
| GGAAAGAGTAAAGGCAATGA+AGG | - | chr3_2:64543145-64543164 | Msa0417390:CDS | 40.0% | |
| ! | TATAGATGGTTCGACTCGTT+TGG | + | chr3_2:64543291-64543310 | None:intergenic | 40.0% |
| TAGCTCAAGTTCGACTCATT+AGG | - | chr3_2:64543349-64543368 | Msa0417390:CDS | 40.0% | |
| AACGACGTCTCATCAATGTT+GGG | - | chr3_2:64543478-64543497 | Msa0417390:intron | 40.0% | |
| CTTGAGATGATGAGAGACTT+GGG | - | chr3_2:64543608-64543627 | Msa0417390:intron | 40.0% | |
| ! | TGTTGGTGTCTGTGCTTTAT+GGG | - | chr3_2:64543930-64543949 | Msa0417390:intron | 40.0% |
| GATGGCAAGCATACTCATTT+GGG | + | chr3_2:64544071-64544090 | None:intergenic | 40.0% | |
| TGATGGCAAGCATACTCATT+TGG | + | chr3_2:64544072-64544091 | None:intergenic | 40.0% | |
| GTTTATAGCTCCATGTGTGA+TGG | + | chr3_2:64544089-64544108 | None:intergenic | 40.0% | |
| ACACATGGAGCTATAAACCT+TGG | - | chr3_2:64544091-64544110 | Msa0417390:intron | 40.0% | |
| GCAGCTTCCTTTACAAATTC+TGG | + | chr3_2:64544142-64544161 | None:intergenic | 40.0% | |
| AAGCTGCAATTCAAGCTATC+AGG | - | chr3_2:64544155-64544174 | Msa0417390:intron | 40.0% | |
| AGCTGCAATTCAAGCTATCA+GGG | - | chr3_2:64544156-64544175 | Msa0417390:intron | 40.0% | |
| CAATTCAAGCTATCAGGGAT+GGG | - | chr3_2:64544161-64544180 | Msa0417390:intron | 40.0% | |
| GGGAATAATCAGTATGCAAG+GGG | - | chr3_2:64544181-64544200 | Msa0417390:intron | 40.0% | |
| ! | AATCAGTATGCAAGGGGTTT+TGG | - | chr3_2:64544187-64544206 | Msa0417390:intron | 40.0% |
| GCAATGACAATGTTGAGATC+TGG | + | chr3_2:64544217-64544236 | None:intergenic | 40.0% | |
| AACAGAATAACCTCATCACC+GGG | + | chr3_2:64544349-64544368 | None:intergenic | 40.0% | |
| !! | TTATGGTGCCACTTTATCCA+TGG | - | chr3_2:64544387-64544406 | Msa0417390:intron | 40.0% |
| ! | TTTTATATTCGCACCAGCCA+TGG | + | chr3_2:64544407-64544426 | None:intergenic | 40.0% |
| TCGACTTCAACTCATCAATC+GGG | + | chr3_2:64544462-64544481 | None:intergenic | 40.0% | |
| ! | GTCGACTTCAACTCATCAAT+CGG | + | chr3_2:64544463-64544482 | None:intergenic | 40.0% |
| TCTTTCCAGTAGGATTGTGA+GGG | + | chr3_2:64544522-64544541 | None:intergenic | 40.0% | |
| ATCTTTCCAGTAGGATTGTG+AGG | + | chr3_2:64544523-64544542 | None:intergenic | 40.0% | |
| ACGGTGACAATGAACTCATT+AGG | - | chr3_2:64544685-64544704 | Msa0417390:intron | 40.0% | |
| CGGTGACAATGAACTCATTA+GGG | - | chr3_2:64544686-64544705 | Msa0417390:intron | 40.0% | |
| AGGGAAGTCATTCTCCTTAA+CGG | - | chr3_2:64544705-64544724 | Msa0417390:intron | 40.0% | |
| AGCACCAGATTCTTACTATG+TGG | - | chr3_2:64544849-64544868 | Msa0417390:intron | 40.0% | |
| AGCTCCACATAGTAAGAATC+TGG | + | chr3_2:64544856-64544875 | None:intergenic | 40.0% | |
| CTTACTATGTGGAGCTAAAG+AGG | - | chr3_2:64544860-64544879 | Msa0417390:intron | 40.0% | |
| TTGAAGGATTGAAGGCTGTT+GGG | - | chr3_2:64544911-64544930 | Msa0417390:intron | 40.0% | |
| CAAAAAAGGTTCCATTGGAC+GGG | + | chr3_2:64544948-64544967 | None:intergenic | 40.0% | |
| GTGATCTGCAAGCACAAAAA+AGG | + | chr3_2:64544962-64544981 | None:intergenic | 40.0% | |
| AGTCAGGTTTACTTTCTGCA+AGG | - | chr3_2:64545098-64545117 | Msa0417390:intron | 40.0% | |
| CAAGGACGAGGAAACTATTA+AGG | - | chr3_2:64545116-64545135 | Msa0417390:intron | 40.0% | |
| CTATTAAGGCTGCTGTTGAA+AGG | - | chr3_2:64545130-64545149 | Msa0417390:intron | 40.0% | |
| CCATCAAAACAACGACATTC+AGG | + | chr3_2:64545282-64545301 | None:intergenic | 40.0% | |
| !!! | CCTGAATGTCGTTGTTTTGA+TGG | - | chr3_2:64545279-64545298 | Msa0417390:CDS | 40.0% |
| !!! | TTGTTTTGATGGGTATGTGC+TGG | - | chr3_2:64545290-64545309 | Msa0417390:exon | 40.0% |
| GAAAACGAAGATTGGAGCTC+TGG | + | chr3_2:64542193-64542212 | None:intergenic | 45.0% | |
| ! | GGTTTCATTTTCGGTGGACA+TGG | + | chr3_2:64542223-64542242 | None:intergenic | 45.0% |
| ! | AGAGGTGGTTTCATTTTCGG+TGG | + | chr3_2:64542229-64542248 | None:intergenic | 45.0% |
| AGTTCGCGAACTGTTTGGTT+CGG | - | chr3_2:64542708-64542727 | Msa0417390:CDS | 45.0% | |
| TCCCTATGCTACACTACCAT+TGG | - | chr3_2:64542821-64542840 | Msa0417390:CDS | 45.0% | |
| GGTCACTCTATCACTCTCTA+GGG | + | chr3_2:64543452-64543471 | None:intergenic | 45.0% | |
| TGATGAGACGTCGTTCGTAA+CGG | + | chr3_2:64543473-64543492 | None:intergenic | 45.0% | |
| GAACGACGTCTCATCAATGT+TGG | - | chr3_2:64543477-64543496 | Msa0417390:intron | 45.0% | |
| GTCTCATCAATGTTGGGATC+CGG | - | chr3_2:64543484-64543503 | Msa0417390:intron | 45.0% | |
| CGACTAGTAACGCTTCTCAA+TGG | + | chr3_2:64543513-64543532 | None:intergenic | 45.0% | |
| !! | TGAGAAGCGTTACTAGTCGT+TGG | - | chr3_2:64543514-64543533 | Msa0417390:intron | 45.0% |
| GGATCCTCTCCAATTCGTAA+CGG | + | chr3_2:64543542-64543561 | None:intergenic | 45.0% | |
| AAGGAAGGATTCCGCTGAAT+TGG | - | chr3_2:64543568-64543587 | Msa0417390:intron | 45.0% | |
| AGGAAGGATTCCGCTGAATT+GGG | - | chr3_2:64543569-64543588 | Msa0417390:intron | 45.0% | |
| TACACAAAGGCCCAATTCAG+CGG | + | chr3_2:64543582-64543601 | None:intergenic | 45.0% | |
| TGAATTGGGCCTTTGTGTAG+TGG | - | chr3_2:64543583-64543602 | Msa0417390:intron | 45.0% | |
| GAATTGGGCCTTTGTGTAGT+GGG | - | chr3_2:64543584-64543603 | Msa0417390:intron | 45.0% | |
| CCAAGTCTCTCATCATCTCA+AGG | + | chr3_2:64543610-64543629 | None:intergenic | 45.0% | |
| CCTTGAGATGATGAGAGACT+TGG | - | chr3_2:64543607-64543626 | Msa0417390:intron | 45.0% | |
| GCTACATAGAACCAAACCAG+AGG | + | chr3_2:64543784-64543803 | None:intergenic | 45.0% | |
| GTGCCTTCAATGTGAAGTGA+CGG | + | chr3_2:64543808-64543827 | None:intergenic | 45.0% | |
| GTCTGAACTTCATCATGCGT+CGG | - | chr3_2:64543828-64543847 | Msa0417390:intron | 45.0% | |
| AGACACCAACACATCGACAT+TGG | + | chr3_2:64543921-64543940 | None:intergenic | 45.0% | |
| ! | GTGTTGGTGTCTGTGCTTTA+TGG | - | chr3_2:64543929-64543948 | Msa0417390:intron | 45.0% |
| AGTATGCTTGCCATCACACA+TGG | - | chr3_2:64544076-64544095 | Msa0417390:intron | 45.0% | |
| TGGAGCTATAAACCTTGGTC+AGG | - | chr3_2:64544096-64544115 | Msa0417390:intron | 45.0% | |
| GGAGCTATAAACCTTGGTCA+GGG | - | chr3_2:64544097-64544116 | Msa0417390:intron | 45.0% | |
| GCAATTCAAGCTATCAGGGA+TGG | - | chr3_2:64544160-64544179 | Msa0417390:intron | 45.0% | |
| GCAATCGCTGCAACTGTATT+AGG | - | chr3_2:64544313-64544332 | Msa0417390:intron | 45.0% | |
| TCAATCGGGACATCGAAATC+TGG | + | chr3_2:64544448-64544467 | None:intergenic | 45.0% | |
| ! | GGCTCGAGTATTCTTTGAGA+TGG | + | chr3_2:64544485-64544504 | None:intergenic | 45.0% |
| AATACCCCTCACAATCCTAC+TGG | - | chr3_2:64544514-64544533 | Msa0417390:intron | 45.0% | |
| CTTTCCAGTAGGATTGTGAG+GGG | + | chr3_2:64544521-64544540 | None:intergenic | 45.0% | |
| CGAGTGAACATCTTTCCAGT+AGG | + | chr3_2:64544532-64544551 | None:intergenic | 45.0% | |
| TGGAAAGATGTTCACTCGAG+AGG | - | chr3_2:64544534-64544553 | Msa0417390:intron | 45.0% | |
| GGGAAGTCATTCTCCTTAAC+GGG | - | chr3_2:64544706-64544725 | Msa0417390:intron | 45.0% | |
| GGAAGTCATTCTCCTTAACG+GGG | - | chr3_2:64544707-64544726 | Msa0417390:intron | 45.0% | |
| ATTTCCCATCCTTTGCAGTG+TGG | - | chr3_2:64544808-64544827 | Msa0417390:intron | 45.0% | |
| TTTCCCATCCTTTGCAGTGT+GGG | - | chr3_2:64544809-64544828 | Msa0417390:intron | 45.0% | |
| GTTGAAGGATTGAAGGCTGT+TGG | - | chr3_2:64544910-64544929 | Msa0417390:intron | 45.0% | |
| ATTGAAGGCTGTTGGGTTCA+AGG | - | chr3_2:64544918-64544937 | Msa0417390:intron | 45.0% | |
| ! | TTCAAGGTATTCCCGTCCAA+TGG | - | chr3_2:64544934-64544953 | Msa0417390:intron | 45.0% |
| TCTAATTAAGGAGGTCGGTG+TGG | - | chr3_2:64545023-64545042 | Msa0417390:intron | 45.0% | |
| ACTAGATTCTTCCCCTCTTC+TGG | + | chr3_2:64545081-64545100 | None:intergenic | 45.0% | |
| AAGAGGGGAAGAATCTAGTC+AGG | - | chr3_2:64545082-64545101 | Msa0417390:intron | 45.0% | |
| GTTTACTTTCTGCAAGGACG+AGG | - | chr3_2:64545104-64545123 | Msa0417390:intron | 45.0% | |
| !! | AATAATAAAATACAATAATA+TGG | - | chr3_2:64542135-64542154 | Msa0417390:three_prime_UTR | 5.0% |
| !!! | ATGTTTTTTTTTTTTTTTTA+TGG | - | chr3_2:64543005-64543024 | Msa0417390:CDS | 5.0% |
| TTTCGGTGGACATGGTAGAG+TGG | + | chr3_2:64542215-64542234 | None:intergenic | 50.0% | |
| TCAGCCCTATCACTCTCCAA+CGG | + | chr3_2:64542578-64542597 | None:intergenic | 50.0% | |
| ! | GTTCGACTCGTTTGGTTCGT+GGG | + | chr3_2:64543283-64543302 | None:intergenic | 50.0% |
| CGGTCACTCTATCACTCTCT+AGG | + | chr3_2:64543453-64543472 | None:intergenic | 50.0% | |
| TAACGCTTCTCAATGGCTGC+CGG | + | chr3_2:64543506-64543525 | None:intergenic | 50.0% | |
| TCGTTGGAGCCGTTACGAAT+TGG | - | chr3_2:64543530-64543549 | Msa0417390:intron | 50.0% | |
| TTGGAGAGGATCCGAGACTA+AGG | - | chr3_2:64543549-64543568 | Msa0417390:intron | 50.0% | |
| AGAGGATCCGAGACTAAGGA+AGG | - | chr3_2:64543553-64543572 | Msa0417390:intron | 50.0% | |
| GCGGAATCCTTCCTTAGTCT+CGG | + | chr3_2:64543563-64543582 | None:intergenic | 50.0% | |
| TCTCAAGGCCCACTACACAA+AGG | + | chr3_2:64543595-64543614 | None:intergenic | 50.0% | |
| GCTCCGTCACTTCACATTGA+AGG | - | chr3_2:64543802-64543821 | Msa0417390:intron | 50.0% | |
| CAGGGCTTTCCCAACTTTGA+TGG | - | chr3_2:64544115-64544134 | Msa0417390:intron | 50.0% | |
| TCGGGACATCGAAATCTGGA+GGG | + | chr3_2:64544444-64544463 | None:intergenic | 50.0% | |
| ATCGGGACATCGAAATCTGG+AGG | + | chr3_2:64544445-64544464 | None:intergenic | 50.0% | |
| CTTTGCCTGGAATGTTCGAG+AGG | - | chr3_2:64544662-64544681 | Msa0417390:intron | 50.0% | |
| AGTCATTCTCCTTAACGGGG+TGG | - | chr3_2:64544710-64544729 | Msa0417390:intron | 50.0% | |
| ATTCTCCTTAACGGGGTGGA+AGG | - | chr3_2:64544714-64544733 | Msa0417390:intron | 50.0% | |
| !! | CATTAAGTGTGGAGGCGCTA+TGG | + | chr3_2:64544749-64544768 | None:intergenic | 50.0% |
| TAGCGCCTCCACACTTAATG+TGG | - | chr3_2:64544749-64544768 | Msa0417390:intron | 50.0% | |
| AGCGCCTCCACACTTAATGT+GGG | - | chr3_2:64544750-64544769 | Msa0417390:intron | 50.0% | |
| ACTCCCCACATTAAGTGTGG+AGG | + | chr3_2:64544757-64544776 | None:intergenic | 50.0% | |
| TTCCCATCCTTTGCAGTGTG+GGG | - | chr3_2:64544810-64544829 | Msa0417390:intron | 50.0% | |
| ! | CTTGCAGATCACACCCCTTT+TGG | - | chr3_2:64544970-64544989 | Msa0417390:intron | 50.0% |
| AATTAAGGAGGTCGGTGTGG+CGG | - | chr3_2:64545026-64545045 | Msa0417390:intron | 50.0% | |
| GGCTGCTGTTGAAAGGATGA+AGG | - | chr3_2:64545137-64545156 | Msa0417390:intron | 50.0% | |
| GGTTTCTGTAGGGACCAGAG+AGG | - | chr3_2:64542550-64542569 | Msa0417390:CDS | 55.0% | |
| AGGAGCCGTTGGAGAGTGAT+AGG | - | chr3_2:64542570-64542589 | Msa0417390:CDS | 55.0% | |
| GGAGCCGTTGGAGAGTGATA+GGG | - | chr3_2:64542571-64542590 | Msa0417390:CDS | 55.0% | |
| ! | GACTCGTTTGGTTCGTGGGT+TGG | + | chr3_2:64543279-64543298 | None:intergenic | 55.0% |
| ! | GGTTCGACTCGTTTGGTTCG+TGG | + | chr3_2:64543284-64543303 | None:intergenic | 55.0% |
| GGAGCCGTTACGAATTGGAG+AGG | - | chr3_2:64543535-64543554 | Msa0417390:intron | 55.0% | |
| AGTTGGGAAAGCCCTGACCA+AGG | + | chr3_2:64544111-64544130 | None:intergenic | 55.0% | |
| !! | GGTGCCACTTTATCCATGGC+TGG | - | chr3_2:64544391-64544410 | Msa0417390:intron | 55.0% |
| CGCACCAGCCATGGATAAAG+TGG | + | chr3_2:64544398-64544417 | None:intergenic | 55.0% | |
| GCCTGGAATGTTCGAGAGGA+CGG | - | chr3_2:64544666-64544685 | Msa0417390:intron | 55.0% | |
| ACCGTCCTCTCGAACATTCC+AGG | + | chr3_2:64544670-64544689 | None:intergenic | 55.0% | |
| TCCTTAACGGGGTGGAAGGT+TGG | - | chr3_2:64544718-64544737 | Msa0417390:intron | 55.0% | |
| TCCAACCTTCCACCCCGTTA+AGG | + | chr3_2:64544722-64544741 | None:intergenic | 55.0% | |
| TAACGGGGTGGAAGGTTGGA+TGG | - | chr3_2:64544722-64544741 | Msa0417390:intron | 55.0% | |
| AACGGGGTGGAAGGTTGGAT+GGG | - | chr3_2:64544723-64544742 | Msa0417390:intron | 55.0% | |
| GCGCCTCCACACTTAATGTG+GGG | - | chr3_2:64544751-64544770 | Msa0417390:intron | 55.0% | |
| CGCACTCCCCACATTAAGTG+TGG | + | chr3_2:64544760-64544779 | None:intergenic | 55.0% | |
| ! | CTTAATGTGGGGAGTGCGAC+AGG | - | chr3_2:64544762-64544781 | Msa0417390:intron | 55.0% |
| AGCCCCACACTGCAAAGGAT+GGG | + | chr3_2:64544815-64544834 | None:intergenic | 55.0% | |
| ACTCTCCAACGGCTCCTCTC+TGG | + | chr3_2:64542567-64542586 | None:intergenic | 60.0% | |
| CAGCCCCACACTGCAAAGGA+TGG | + | chr3_2:64544816-64544835 | None:intergenic | 60.0% | |
| AGGGACCAGAGAGGAGCCGT+TGG | - | chr3_2:64542559-64542578 | Msa0417390:CDS | 65.0% | |
| GCTGCAGCCCCACACTGCAA+AGG | + | chr3_2:64544820-64544839 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 64542084 | 64545438 | 64542084 | ID=Msa0417390;Name=Msa0417390 |
| chr3_2 | mRNA | 64542084 | 64545438 | 64542084 | ID=Msa0417390-mRNA-1;Parent=Msa0417390;Name=Msa0417390-mRNA-1;_AED=0.27;_eAED=0.27;_QI=138|1|1|1|0|0|2|262|399 |
| chr3_2 | exon | 64542084 | 64543494 | 64542084 | ID=Msa0417390-mRNA-1:exon:14349;Parent=Msa0417390-mRNA-1 |
| chr3_2 | exon | 64545250 | 64545438 | 64545250 | ID=Msa0417390-mRNA-1:exon:14348;Parent=Msa0417390-mRNA-1 |
| chr3_2 | five_prime_UTR | 64545301 | 64545438 | 64545301 | ID=Msa0417390-mRNA-1:five_prime_utr;Parent=Msa0417390-mRNA-1 |
| chr3_2 | CDS | 64545250 | 64545300 | 64545250 | ID=Msa0417390-mRNA-1:cds;Parent=Msa0417390-mRNA-1 |
| chr3_2 | CDS | 64542346 | 64543494 | 64542346 | ID=Msa0417390-mRNA-1:cds;Parent=Msa0417390-mRNA-1 |
| chr3_2 | three_prime_UTR | 64542084 | 64542345 | 64542084 | ID=Msa0417390-mRNA-1:three_prime_utr;Parent=Msa0417390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
