Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509740 | XP_024635290.1 | 96.491 | 399 | 14 | 0 | 1 | 399 | 75 | 473 | 0.0 | 803 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509740 | sp|P77806|YBDL_ECOLI | 40.625 | 384 | 226 | 2 | 13 | 395 | 3 | 385 | 1.82e-104 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509740 | A0A396IWX1 | 82.029 | 345 | 37 | 2 | 16 | 360 | 9 | 328 | 0.0 | 565 |
| Msa0509740 | A0A396IWX1 | 96.491 | 399 | 14 | 0 | 1 | 399 | 410 | 808 | 0.0 | 803 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0369980 | Msa0509740 | 0.838210 | 3.292079e-57 | -8.615850e-47 |
| Msa0417390 | Msa0509740 | 0.899600 | 1.688127e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509740 | MtrunA17_Chr3g0114831 | 96.491 | 399 | 14 | 0 | 1 | 399 | 410 | 808 | 0.0 | 803 |
| Msa0509740 | MtrunA17_Chr3g0114831 | 82.029 | 345 | 37 | 2 | 16 | 360 | 9 | 328 | 0.0 | 565 |
| Msa0509740 | MtrunA17_Chr3g0114811 | 85.195 | 385 | 57 | 0 | 15 | 399 | 61 | 445 | 0.0 | 704 |
| Msa0509740 | MtrunA17_Chr1g0195061 | 38.579 | 394 | 226 | 5 | 17 | 397 | 4 | 394 | 1.20e-84 | 263 |
| Msa0509740 | MtrunA17_Chr8g0382671 | 29.650 | 371 | 239 | 9 | 43 | 397 | 102 | 466 | 2.73e-47 | 168 |
| Msa0509740 | MtrunA17_Chr7g0267911 | 29.111 | 371 | 241 | 9 | 43 | 397 | 100 | 464 | 8.81e-47 | 166 |
| Msa0509740 | MtrunA17_Chr8g0360241 | 24.202 | 376 | 250 | 12 | 43 | 394 | 43 | 407 | 9.47e-23 | 99.4 |
| Msa0509740 | MtrunA17_Chr2g0324801 | 25.967 | 362 | 243 | 12 | 50 | 394 | 22 | 375 | 1.90e-21 | 95.1 |
| Msa0509740 | MtrunA17_Chr4g0004131 | 24.938 | 405 | 259 | 17 | 17 | 399 | 6 | 387 | 1.07e-20 | 93.2 |
| Msa0509740 | MtrunA17_Chr8g0389311 | 26.056 | 284 | 189 | 10 | 78 | 342 | 88 | 369 | 4.55e-14 | 73.6 |
| Msa0509740 | MtrunA17_Chr8g0389321 | 26.056 | 284 | 189 | 10 | 78 | 342 | 88 | 369 | 4.55e-14 | 73.6 |
| Msa0509740 | MtrunA17_Chr6g0462441 | 24.503 | 302 | 191 | 12 | 92 | 385 | 131 | 403 | 4.78e-14 | 73.2 |
| Msa0509740 | MtrunA17_Chr8g0387481 | 23.276 | 348 | 226 | 13 | 78 | 394 | 95 | 432 | 1.23e-12 | 69.3 |
| Msa0509740 | MtrunA17_Chr3g0135251 | 23.387 | 372 | 240 | 14 | 52 | 394 | 69 | 424 | 3.83e-12 | 67.8 |
| Msa0509740 | MtrunA17_Chr2g0278911 | 25.081 | 307 | 196 | 10 | 43 | 323 | 73 | 371 | 1.11e-11 | 66.2 |
| Msa0509740 | MtrunA17_Chr4g0054371 | 25.000 | 328 | 208 | 14 | 99 | 394 | 110 | 431 | 1.24e-11 | 66.2 |
| Msa0509740 | MtrunA17_Chr6g0475681 | 24.571 | 350 | 238 | 14 | 68 | 395 | 178 | 523 | 5.47e-11 | 64.3 |
| Msa0509740 | MtrunA17_Chr8g0348351 | 23.343 | 347 | 234 | 14 | 78 | 399 | 94 | 433 | 7.71e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509740 | AT1G77670.1 | 76.190 | 399 | 91 | 1 | 1 | 399 | 44 | 438 | 0.0 | 664 |
| Msa0509740 | AT2G22250.1 | 28.814 | 413 | 269 | 11 | 4 | 397 | 13 | 419 | 7.16e-53 | 182 |
| Msa0509740 | AT2G22250.3 | 28.814 | 413 | 269 | 11 | 4 | 397 | 60 | 466 | 2.21e-52 | 182 |
| Msa0509740 | AT2G22250.2 | 28.814 | 413 | 269 | 11 | 4 | 397 | 60 | 466 | 2.21e-52 | 182 |
| Msa0509740 | AT5G36160.1 | 25.600 | 375 | 246 | 14 | 43 | 394 | 45 | 409 | 8.36e-26 | 108 |
| Msa0509740 | AT4G28410.1 | 24.282 | 383 | 256 | 11 | 32 | 394 | 67 | 435 | 6.24e-23 | 100 |
| Msa0509740 | AT2G20610.1 | 22.572 | 381 | 261 | 13 | 34 | 394 | 67 | 433 | 1.41e-21 | 96.7 |
| Msa0509740 | AT5G53970.1 | 23.607 | 377 | 251 | 10 | 43 | 394 | 36 | 400 | 3.21e-21 | 95.1 |
| Msa0509740 | AT4G28410.2 | 25.551 | 227 | 163 | 4 | 32 | 256 | 67 | 289 | 7.10e-21 | 94.4 |
| Msa0509740 | AT4G28420.2 | 22.606 | 376 | 263 | 13 | 35 | 393 | 62 | 426 | 6.37e-20 | 91.7 |
| Msa0509740 | AT4G23590.1 | 25.886 | 367 | 219 | 14 | 59 | 394 | 58 | 402 | 1.73e-19 | 90.1 |
| Msa0509740 | AT2G24850.1 | 25.294 | 340 | 231 | 13 | 71 | 394 | 85 | 417 | 2.79e-19 | 89.7 |
| Msa0509740 | AT1G80360.3 | 22.047 | 381 | 264 | 12 | 34 | 399 | 24 | 386 | 3.71e-19 | 89.0 |
| Msa0509740 | AT1G80360.2 | 22.047 | 381 | 264 | 12 | 34 | 399 | 24 | 386 | 3.71e-19 | 89.0 |
| Msa0509740 | AT1G80360.4 | 22.047 | 381 | 264 | 12 | 34 | 399 | 24 | 386 | 3.71e-19 | 89.0 |
| Msa0509740 | AT1G80360.1 | 22.047 | 381 | 264 | 12 | 34 | 399 | 24 | 386 | 3.71e-19 | 89.0 |
| Msa0509740 | AT4G28420.1 | 24.000 | 225 | 163 | 6 | 35 | 256 | 62 | 281 | 6.88e-19 | 88.2 |
| Msa0509740 | AT2G20610.2 | 22.034 | 354 | 247 | 12 | 34 | 367 | 67 | 411 | 7.24e-19 | 88.6 |
| Msa0509740 | AT4G23600.1 | 22.905 | 358 | 241 | 11 | 59 | 394 | 58 | 402 | 6.54e-17 | 82.4 |
| Msa0509740 | AT4G23600.3 | 26.341 | 205 | 138 | 4 | 59 | 256 | 58 | 256 | 3.78e-15 | 77.0 |
| Msa0509740 | AT4G37770.1 | 25.723 | 346 | 223 | 14 | 78 | 395 | 87 | 426 | 4.37e-15 | 77.0 |
| Msa0509740 | AT4G23600.2 | 22.903 | 310 | 206 | 9 | 106 | 394 | 1 | 298 | 8.77e-15 | 75.1 |
| Msa0509740 | AT5G51690.2 | 23.235 | 340 | 235 | 11 | 78 | 395 | 30 | 365 | 3.88e-14 | 73.6 |
| Msa0509740 | AT4G08040.1 | 26.393 | 341 | 222 | 13 | 78 | 394 | 85 | 420 | 5.40e-14 | 73.9 |
| Msa0509740 | AT5G51690.1 | 23.235 | 340 | 235 | 11 | 78 | 395 | 153 | 488 | 7.56e-14 | 73.6 |
| Msa0509740 | AT3G49700.1 | 24.259 | 371 | 238 | 15 | 53 | 395 | 71 | 426 | 3.70e-13 | 71.2 |
| Msa0509740 | AT2G13810.1 | 24.911 | 281 | 164 | 10 | 75 | 323 | 106 | 371 | 8.40e-12 | 67.0 |
| Msa0509740 | AT2G22810.1 | 24.561 | 342 | 231 | 12 | 78 | 394 | 87 | 426 | 1.38e-11 | 66.2 |
| Msa0509740 | AT4G11280.1 | 23.392 | 342 | 231 | 14 | 78 | 394 | 98 | 433 | 2.49e-11 | 65.5 |
Find 120 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCTTCCTTTACAAATTC+TGG | 0.166218 | 3_4:+58218297 | None:intergenic |
| CACATGTCTACAGCAAATTT+TGG | 0.178483 | 3_4:-58220528 | None:intergenic |
| GTAACAGTAATTTCCTTATC+AGG | 0.190896 | 3_4:+58218162 | None:intergenic |
| ACTAGATTCTTCCCCTCTTC+TGG | 0.194253 | 3_4:+58217358 | None:intergenic |
| TATCGCAAAGAGAGCTATTT+TGG | 0.198899 | 3_4:-58217548 | Msa0509740:CDS |
| CTTGCAGATCACACCCCTTT+TGG | 0.237315 | 3_4:-58217466 | Msa0509740:CDS |
| AATCAGTATGCAAGGGGTTT+TGG | 0.252107 | 3_4:-58218249 | Msa0509740:CDS |
| CCATCAAAACAACGACATTC+AGG | 0.272714 | 3_4:+58217157 | None:intergenic |
| GCAATCGCTGCAACTGTATT+AGG | 0.275629 | 3_4:-58218123 | Msa0509740:CDS |
| TTCAAGTAAAATACACTTAA+AGG | 0.276934 | 3_4:+58217382 | None:intergenic |
| CAGGGCTTTCCCAACTTTGA+TGG | 0.277986 | 3_4:-58218321 | Msa0509740:CDS |
| TTGCATTGAGAATGATGTTC+TGG | 0.306322 | 3_4:-58217857 | Msa0509740:CDS |
| AAGCTGCAATTCAAGCTATC+AGG | 0.308373 | 3_4:-58218281 | Msa0509740:CDS |
| GCACCATAAGAATCATAAAA+AGG | 0.324575 | 3_4:+58218063 | None:intergenic |
| GGGAAGTCATTCTCCTTAAC+GGG | 0.341836 | 3_4:-58217730 | Msa0509740:CDS |
| GAAAATACATCATCCTTTGC+AGG | 0.348131 | 3_4:-58220348 | Msa0509740:intron |
| TCATAAGTTGGCATTCGATA+TGG | 0.360612 | 3_4:-58217815 | Msa0509740:CDS |
| ACGGTGACAATGAACTCATT+AGG | 0.367287 | 3_4:-58217751 | Msa0509740:CDS |
| CAAGGACGAGGAAACTATTA+AGG | 0.370324 | 3_4:-58217320 | Msa0509740:CDS |
| GAGAGATTCAAGAAAGATAC+TGG | 0.383980 | 3_4:-58218198 | Msa0509740:CDS |
| ACCGTCCTCTCGAACATTCC+AGG | 0.392162 | 3_4:+58217769 | None:intergenic |
| ATTGAAGGCTGTTGGGTTCA+AGG | 0.395573 | 3_4:-58217518 | Msa0509740:CDS |
| TGATGGCAAGCATACTCATT+TGG | 0.396859 | 3_4:+58218367 | None:intergenic |
| AATTACACGAATCAAACCTT+TGG | 0.397311 | 3_4:+58217196 | None:intergenic |
| GTCGACTTCAACTCATCAAT+CGG | 0.398128 | 3_4:+58217976 | None:intergenic |
| ATTTCAATTGCTACTTTGCC+TGG | 0.404821 | 3_4:-58217787 | Msa0509740:CDS |
| TGGAGCTATAAACCTTGGTC+AGG | 0.415915 | 3_4:-58218340 | Msa0509740:CDS |
| TTTCCCATCCTTTGCAGTGT+GGG | 0.418735 | 3_4:-58217627 | Msa0509740:CDS |
| AGCTCCACATAGTAAGAATC+TGG | 0.422650 | 3_4:+58217583 | None:intergenic |
| GAAACCGAAGATTGGAGCTC+TGG | 0.423381 | 3_4:+58220409 | None:intergenic |
| AAGGAAATTACTGTTACATC+TGG | 0.429368 | 3_4:-58218156 | Msa0509740:CDS |
| CGGTGACAATGAACTCATTA+GGG | 0.433243 | 3_4:-58217750 | Msa0509740:CDS |
| TCAATCGGGACATCGAAATC+TGG | 0.437458 | 3_4:+58217991 | None:intergenic |
| ATTACACGAATCAAACCTTT+GGG | 0.440457 | 3_4:+58217197 | None:intergenic |
| AGGGAAGTCATTCTCCTTAA+CGG | 0.443160 | 3_4:-58217731 | Msa0509740:CDS |
| GTGAGGGGTATTTATAAGAA+TGG | 0.445966 | 3_4:+58217933 | None:intergenic |
| GCAATGACAATGTTGAGATC+TGG | 0.447498 | 3_4:+58218222 | None:intergenic |
| TCCAACCTTCCACCCCGTTA+AGG | 0.449140 | 3_4:+58217717 | None:intergenic |
| AATCCCAGAGCTCCAATCTT+CGG | 0.449474 | 3_4:-58220413 | Msa0509740:five_prime_UTR |
| CAGCCCCACACTGCAAAGGA+TGG | 0.450947 | 3_4:+58217623 | None:intergenic |
| TCCTTAACGGGGTGGAAGGT+TGG | 0.453825 | 3_4:-58217718 | Msa0509740:CDS |
| ATAAAATACAATAATATGTC+AGG | 0.457835 | 3_4:-58220460 | Msa0509740:five_prime_UTR |
| TTATGGTGCCACTTTATCCA+TGG | 0.461803 | 3_4:-58218049 | Msa0509740:CDS |
| AATACCCCTCACAATCCTAC+TGG | 0.467702 | 3_4:-58217922 | Msa0509740:CDS |
| GTTGAAGGATTGAAGGCTGT+TGG | 0.468862 | 3_4:-58217526 | Msa0509740:CDS |
| TTGAAGGATTGAAGGCTGTT+GGG | 0.469420 | 3_4:-58217525 | Msa0509740:CDS |
| CTTAATGTGGGGAGTGCGAC+AGG | 0.472336 | 3_4:-58217674 | Msa0509740:CDS |
| AAATTCTGGACCATCAAAGT+TGG | 0.480265 | 3_4:+58218311 | None:intergenic |
| CTTACTATGTGGAGCTAAAG+AGG | 0.481335 | 3_4:-58217576 | Msa0509740:CDS |
| ATTGGAGCTCTGGGATTTCG+AGG | 0.484481 | 3_4:+58220419 | None:intergenic |
| GTAGAGTCGAAACCGAAGAT+TGG | 0.490087 | 3_4:+58220401 | None:intergenic |
| GATGGCAAGCATACTCATTT+GGG | 0.490591 | 3_4:+58218368 | None:intergenic |
| GGTGCCACTTTATCCATGGC+TGG | 0.493054 | 3_4:-58218045 | Msa0509740:CDS |
| TAACGGGGTGGAAGGTTGGA+TGG | 0.495813 | 3_4:-58217714 | Msa0509740:CDS |
| GCCTGGAATGTTCGAGAGGA+CGG | 0.502694 | 3_4:-58217770 | Msa0509740:CDS |
| AATTCTGGACCATCAAAGTT+GGG | 0.503111 | 3_4:+58218312 | None:intergenic |
| TGATGAAGTGTATCATAAGT+TGG | 0.503345 | 3_4:-58217827 | Msa0509740:CDS |
| AAGAGGGGAAGAATCTAGTC+AGG | 0.503919 | 3_4:-58217354 | Msa0509740:CDS |
| TTCCCATCCTTTGCAGTGTG+GGG | 0.508720 | 3_4:-58217626 | Msa0509740:CDS |
| CATCAAAACAACGACATTCA+GGG | 0.510144 | 3_4:+58217158 | None:intergenic |
| CATTAAGTGTGGAGGCGCTA+TGG | 0.515779 | 3_4:+58217690 | None:intergenic |
| AAACCTTTGGGATACTAGAA+AGG | 0.517804 | 3_4:+58217209 | None:intergenic |
| AGCACCAGATTCTTACTATG+TGG | 0.518355 | 3_4:-58217587 | Msa0509740:CDS |
| CGCACCAGCCATGGATAAAG+TGG | 0.520207 | 3_4:+58218041 | None:intergenic |
| ACTAAATGTAGACCCTGATA+AGG | 0.524116 | 3_4:-58218175 | Msa0509740:CDS |
| TAACAGTAATTTCCTTATCA+GGG | 0.528262 | 3_4:+58218163 | None:intergenic |
| ATCTTTCCAGTAGGATTGTG+AGG | 0.528488 | 3_4:+58217916 | None:intergenic |
| CTATTAAGGCTGCTGTTGAA+AGG | 0.533649 | 3_4:-58217306 | Msa0509740:CDS |
| GTTTACTTTCTGCAAGGACG+AGG | 0.538788 | 3_4:-58217332 | Msa0509740:CDS |
| ATTTCCCATCCTTTGCAGTG+TGG | 0.540019 | 3_4:-58217628 | Msa0509740:CDS |
| TAGCGCCTCCACACTTAATG+TGG | 0.544673 | 3_4:-58217687 | Msa0509740:CDS |
| TTCAAGGTATTCCCGTCCAA+TGG | 0.546743 | 3_4:-58217502 | Msa0509740:CDS |
| GCTGCAGCCCCACACTGCAA+AGG | 0.548860 | 3_4:+58217619 | None:intergenic |
| GGCGCGAGTATTCTTTGAGA+TGG | 0.551632 | 3_4:+58217954 | None:intergenic |
| AAACCGAAGATTGGAGCTCT+GGG | 0.555644 | 3_4:+58220410 | None:intergenic |
| GCAATTCAAGCTATCAGGGA+TGG | 0.556773 | 3_4:-58218276 | Msa0509740:CDS |
| ATTCTCCTTAACGGGGTGGA+AGG | 0.557345 | 3_4:-58217722 | Msa0509740:CDS |
| AACGGGGTGGAAGGTTGGAT+GGG | 0.562198 | 3_4:-58217713 | Msa0509740:CDS |
| TGATGGTCCAGAATTTGTAA+AGG | 0.563207 | 3_4:-58218304 | Msa0509740:CDS |
| AGCTGCAATTCAAGCTATCA+GGG | 0.564260 | 3_4:-58218280 | Msa0509740:CDS |
| AAACAGAATAACCTCATCAC+CGG | 0.564533 | 3_4:+58218089 | None:intergenic |
| GGCTGCTGTTGAAAGGATGA+AGG | 0.567990 | 3_4:-58217299 | Msa0509740:CDS |
| GTGTTTGTTAGGTTGCAAAA+CGG | 0.570636 | 3_4:-58218419 | Msa0509740:intron |
| AGCCCCACACTGCAAAGGAT+GGG | 0.572186 | 3_4:+58217624 | None:intergenic |
| ATGGGAATAATCAGTATGCA+AGG | 0.573797 | 3_4:-58218257 | Msa0509740:CDS |
| CAATTCAAGCTATCAGGGAT+GGG | 0.575114 | 3_4:-58218275 | Msa0509740:CDS |
| CGAGTGAACATCTTTCCAGT+AGG | 0.577547 | 3_4:+58217907 | None:intergenic |
| AGTCAGGTTTACTTTCTGCA+AGG | 0.577645 | 3_4:-58217338 | Msa0509740:CDS |
| TCGACTTCAACTCATCAATC+GGG | 0.583078 | 3_4:+58217977 | None:intergenic |
| AGTATGCTTGCCATCACACA+TGG | 0.583773 | 3_4:-58218360 | Msa0509740:CDS |
| AGCGCCTCCACACTTAATGT+GGG | 0.584458 | 3_4:-58217686 | Msa0509740:CDS |
| GTATTAGGATTAATAAATCC+CGG | 0.588469 | 3_4:-58218108 | Msa0509740:CDS |
| ATTAATAAATCCCGGTGATG+AGG | 0.595433 | 3_4:-58218100 | Msa0509740:CDS |
| TCTTTCCAGTAGGATTGTGA+GGG | 0.595542 | 3_4:+58217917 | None:intergenic |
| TTTCCTTTCTAGTATCCCAA+AGG | 0.600055 | 3_4:-58217212 | Msa0509740:three_prime_UTR |
| CGCACTCCCCACATTAAGTG+TGG | 0.602087 | 3_4:+58217679 | None:intergenic |
| TTACTATGTGGAGCTAAAGA+GGG | 0.603840 | 3_4:-58217575 | Msa0509740:CDS |
| ATCGGGACATCGAAATCTGG+AGG | 0.605759 | 3_4:+58217994 | None:intergenic |
| AAAAGAGGATGAACCTGCAA+AGG | 0.605913 | 3_4:+58220335 | None:intergenic |
| GTTTATAGCTCCATGTGTGA+TGG | 0.610496 | 3_4:+58218350 | None:intergenic |
| TTGTGAATATCTAATTAAGG+AGG | 0.616139 | 3_4:-58217422 | Msa0509740:CDS |
| ACACATGGAGCTATAAACCT+TGG | 0.620022 | 3_4:-58218345 | Msa0509740:CDS |
| AATTAAGGAGGTCGGTGTGG+CGG | 0.620432 | 3_4:-58217410 | Msa0509740:CDS |
| TGGAAAGATGTTCACTCGAG+AGG | 0.626679 | 3_4:-58217902 | Msa0509740:CDS |
| AACAGAATAACCTCATCACC+GGG | 0.628363 | 3_4:+58218090 | None:intergenic |
| ATCAAAACAACGACATTCAG+GGG | 0.632415 | 3_4:+58217159 | None:intergenic |
| TGGGAATAATCAGTATGCAA+GGG | 0.635598 | 3_4:-58218256 | Msa0509740:CDS |
| CTTTGCCTGGAATGTTCGAG+AGG | 0.637690 | 3_4:-58217774 | Msa0509740:CDS |
| ACTCCCCACATTAAGTGTGG+AGG | 0.638165 | 3_4:+58217682 | None:intergenic |
| GGGAATAATCAGTATGCAAG+GGG | 0.638567 | 3_4:-58218255 | Msa0509740:CDS |
| TCTAATTAAGGAGGTCGGTG+TGG | 0.640787 | 3_4:-58217413 | Msa0509740:CDS |
| TTTACTTGAATCCAGAAGAG+GGG | 0.646076 | 3_4:-58217369 | Msa0509740:CDS |
| GGAGCTATAAACCTTGGTCA+GGG | 0.653137 | 3_4:-58218339 | Msa0509740:CDS |
| AGTTGGGAAAGCCCTGACCA+AGG | 0.656564 | 3_4:+58218328 | None:intergenic |
| AGTCATTCTCCTTAACGGGG+TGG | 0.665949 | 3_4:-58217726 | Msa0509740:CDS |
| TCGGGACATCGAAATCTGGA+GGG | 0.670723 | 3_4:+58217995 | None:intergenic |
| GCGCCTCCACACTTAATGTG+GGG | 0.671863 | 3_4:-58217685 | Msa0509740:CDS |
| CTTTCCAGTAGGATTGTGAG+GGG | 0.686125 | 3_4:+58217918 | None:intergenic |
| GAATATCTAATTAAGGAGGT+CGG | 0.694506 | 3_4:-58217418 | Msa0509740:CDS |
| GGAAGTCATTCTCCTTAACG+GGG | 0.699032 | 3_4:-58217729 | Msa0509740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTATTTTATTATTTGA+TGG | + | chr3_4:58217068-58217087 | None:intergenic | 10.0% |
| !!! | CAATATGTTTTTTTTTTTTA+TGG | - | chr3_4:58217946-58217965 | Msa0509740:CDS | 10.0% |
| !! | ATAAAATACAATAATATGTC+AGG | - | chr3_4:58217075-58217094 | Msa0509740:three_prime_UTR | 15.0% |
| !! | ATGAAAATATGTAAAAGAAA+CGG | + | chr3_4:58217362-58217381 | None:intergenic | 15.0% |
| !!! | ATATTTTCATTTTTAGCTTT+GGG | - | chr3_4:58217372-58217391 | Msa0509740:CDS | 15.0% |
| !! | AATATTTAAAAATGACCTTA+TGG | + | chr3_4:58218176-58218195 | None:intergenic | 15.0% |
| !!! | ATTTTGTGAATATCTAATTA+AGG | - | chr3_4:58220110-58220129 | Msa0509740:intron | 15.0% |
| !!! | CATATTTTCATTTTTAGCTT+TGG | - | chr3_4:58217371-58217390 | Msa0509740:CDS | 20.0% |
| !!! | TATTTTCATTTTTAGCTTTG+GGG | - | chr3_4:58217373-58217392 | Msa0509740:CDS | 20.0% |
| !! | AACAAATATCTTATGAGAAA+AGG | - | chr3_4:58217919-58217938 | Msa0509740:CDS | 20.0% |
| !!! | TTTTTTTTTTTATGGAGACT+TGG | - | chr3_4:58217954-58217973 | Msa0509740:CDS | 20.0% |
| !!! | AATTTGAAATTGGAAATGAA+AGG | - | chr3_4:58218065-58218084 | Msa0509740:CDS | 20.0% |
| !! | TAAACAATTAATATGTGTTC+TGG | + | chr3_4:58218580-58218599 | None:intergenic | 20.0% |
| !! | ACATATTAATTGTTTATCCT+CGG | - | chr3_4:58218584-58218603 | Msa0509740:intron | 20.0% |
| !! | TTCAAGTAAAATACACTTAA+AGG | + | chr3_4:58220156-58220175 | None:intergenic | 20.0% |
| !!! | ATTTTCATTTTTAGCTTTGG+GGG | - | chr3_4:58217374-58217393 | Msa0509740:CDS | 25.0% |
| ! | AATGAAAGCAAATAAACAGT+AGG | + | chr3_4:58217416-58217435 | None:intergenic | 25.0% |
| !!! | GCAAATGTTTTTTTATGCTT+CGG | - | chr3_4:58218037-58218056 | Msa0509740:CDS | 25.0% |
| ! | AGTTGAACTTGAATTATAGA+TGG | + | chr3_4:58218246-58218265 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | - | chr3_4:58218693-58218712 | Msa0509740:intron | 25.0% |
| ! | TTCATATTTCATATTTCCTC+TGG | - | chr3_4:58218864-58218883 | Msa0509740:intron | 25.0% |
| ! | CATTGTTAGATAAGATAAAC+AGG | + | chr3_4:58219080-58219099 | None:intergenic | 25.0% |
| ! | TAACAGTAATTTCCTTATCA+GGG | + | chr3_4:58219375-58219394 | None:intergenic | 25.0% |
| ! | GTATTAGGATTAATAAATCC+CGG | - | chr3_4:58219427-58219446 | Msa0509740:intron | 25.0% |
| !! | GATCCTTTTTATGATTCTTA+TGG | - | chr3_4:58219469-58219488 | Msa0509740:intron | 25.0% |
| ! | TTGTGAATATCTAATTAAGG+AGG | - | chr3_4:58220113-58220132 | Msa0509740:intron | 25.0% |
| AGGAATTCAAAAGAGAAAAG+AGG | + | chr3_4:58217218-58217237 | None:intergenic | 30.0% | |
| TGTAAAAGAAACGGTTACAT+AGG | + | chr3_4:58217353-58217372 | None:intergenic | 30.0% | |
| ATAAACAGTAGGTCAAATTG+AGG | + | chr3_4:58217405-58217424 | None:intergenic | 30.0% | |
| AATTGCATTGTGGTAAATGA+TGG | - | chr3_4:58217465-58217484 | Msa0509740:CDS | 30.0% | |
| ! | AATTGGTTTAGTACGAAACT+AGG | - | chr3_4:58217580-58217599 | Msa0509740:CDS | 30.0% |
| !! | TGAGTTTGATTTGAGATTCT+TGG | + | chr3_4:58217795-58217814 | None:intergenic | 30.0% |
| !!! | AATGTTTTTTTATGCTTCGG+TGG | - | chr3_4:58218040-58218059 | Msa0509740:CDS | 30.0% |
| GAAATGAAAGGAAAGAGTAA+AGG | - | chr3_4:58218077-58218096 | Msa0509740:CDS | 30.0% | |
| AGTTAAACTTTCTACTTCCT+AGG | - | chr3_4:58218119-58218138 | Msa0509740:CDS | 30.0% | |
| !!! | TTCCTAGGTTTTTTAAGAAG+AGG | - | chr3_4:58218134-58218153 | Msa0509740:CDS | 30.0% |
| TTCCTCTTCTTAAAAAACCT+AGG | + | chr3_4:58218139-58218158 | None:intergenic | 30.0% | |
| GACAATTATTCTGTTGGATT+TGG | + | chr3_4:58218324-58218343 | None:intergenic | 30.0% | |
| TGATTCGACAATTATTCTGT+TGG | + | chr3_4:58218330-58218349 | None:intergenic | 30.0% | |
| ATTTCGAACTAAATTCGAGT+TGG | - | chr3_4:58218351-58218370 | Msa0509740:CDS | 30.0% | |
| TAATTGTTTATCCTCGGATT+AGG | - | chr3_4:58218590-58218609 | Msa0509740:intron | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | + | chr3_4:58218662-58218681 | None:intergenic | 30.0% | |
| ATTTCATATTTCCTCTGGTT+TGG | - | chr3_4:58218869-58218888 | Msa0509740:intron | 30.0% | |
| ! | CATCGACATTGGTAATAATA+TGG | + | chr3_4:58219009-58219028 | None:intergenic | 30.0% |
| GATAAGATAAACAGGTACTA+AGG | + | chr3_4:58219072-58219091 | None:intergenic | 30.0% | |
| AATTAAGCCATGTGTTTGTT+AGG | - | chr3_4:58219105-58219124 | Msa0509740:intron | 30.0% | |
| GTAACAGTAATTTCCTTATC+AGG | + | chr3_4:58219376-58219395 | None:intergenic | 30.0% | |
| AAGGAAATTACTGTTACATC+TGG | - | chr3_4:58219379-58219398 | Msa0509740:intron | 30.0% | |
| GCACCATAAGAATCATAAAA+AGG | + | chr3_4:58219475-58219494 | None:intergenic | 30.0% | |
| TGATGAAGTGTATCATAAGT+TGG | - | chr3_4:58219708-58219727 | Msa0509740:intron | 30.0% | |
| !!! | TATTTTGGTTGAAGGATTGA+AGG | - | chr3_4:58220002-58220021 | Msa0509740:intron | 30.0% |
| ! | ATCATTTTCATGTCCAAAAG+GGG | + | chr3_4:58220085-58220104 | None:intergenic | 30.0% |
| ! | CATCATTTTCATGTCCAAAA+GGG | + | chr3_4:58220086-58220105 | None:intergenic | 30.0% |
| ! | ACATCATTTTCATGTCCAAA+AGG | + | chr3_4:58220087-58220106 | None:intergenic | 30.0% |
| GAATATCTAATTAAGGAGGT+CGG | - | chr3_4:58220117-58220136 | Msa0509740:intron | 30.0% | |
| ! | ATTTTACTTGAATCCAGAAG+AGG | - | chr3_4:58220164-58220183 | Msa0509740:intron | 30.0% |
| ! | TTTTACTTGAATCCAGAAGA+GGG | - | chr3_4:58220165-58220184 | Msa0509740:intron | 30.0% |
| ATTACACGAATCAAACCTTT+GGG | + | chr3_4:58220341-58220360 | None:intergenic | 30.0% | |
| AATTACACGAATCAAACCTT+TGG | + | chr3_4:58220342-58220361 | None:intergenic | 30.0% | |
| ! | ATGATGTATTTTCTCAGAGG+TGG | + | chr3_4:58217180-58217199 | None:intergenic | 35.0% |
| ! | AGGATGATGTATTTTCTCAG+AGG | + | chr3_4:58217183-58217202 | None:intergenic | 35.0% |
| GAAAATACATCATCCTTTGC+AGG | - | chr3_4:58217187-58217206 | Msa0509740:three_prime_UTR | 35.0% | |
| ! | TCCTTTCACCTTACACTTTT+CGG | - | chr3_4:58217234-58217253 | Msa0509740:three_prime_UTR | 35.0% |
| ! | AAATGGATCCGAAAAGTGTA+AGG | + | chr3_4:58217245-58217264 | None:intergenic | 35.0% |
| GATAGCATAGCAGTAGTAAA+TGG | + | chr3_4:58217262-58217281 | None:intergenic | 35.0% | |
| CGCTCTTTATAATTGCATTG+TGG | - | chr3_4:58217455-58217474 | Msa0509740:CDS | 35.0% | |
| TGGTAAATGATGGTTTCTGT+AGG | - | chr3_4:58217475-58217494 | Msa0509740:CDS | 35.0% | |
| GGTAAATGATGGTTTCTGTA+GGG | - | chr3_4:58217476-58217495 | Msa0509740:CDS | 35.0% | |
| ! | TTTAAAGTTCGCGAACTGTT+TGG | - | chr3_4:58217647-58217666 | Msa0509740:CDS | 35.0% |
| TTGAGATTCTTGGATTCCAA+TGG | + | chr3_4:58217785-58217804 | None:intergenic | 35.0% | |
| ATACCATCATCATACCTCAA+AGG | - | chr3_4:58218011-58218030 | Msa0509740:CDS | 35.0% | |
| AAAACATTTGCTCTCCTTTG+AGG | + | chr3_4:58218028-58218047 | None:intergenic | 35.0% | |
| ! | TTCGGTGGAGAATTTGAAAT+TGG | - | chr3_4:58218055-58218074 | Msa0509740:CDS | 35.0% |
| ACTGAAACGTTTAAGCCATA+AGG | - | chr3_4:58218158-58218177 | Msa0509740:CDS | 35.0% | |
| !! | GAACTAAATTCGAGTTGGTT+CGG | - | chr3_4:58218356-58218375 | Msa0509740:CDS | 35.0% |
| AAGTAGAAACCTATGAAGCA+CGG | + | chr3_4:58218760-58218779 | None:intergenic | 35.0% | |
| TATTACCAATGTCGATGTGT+TGG | - | chr3_4:58219012-58219031 | Msa0509740:intron | 35.0% | |
| TTTGCAACCTAACAAACACA+TGG | + | chr3_4:58219115-58219134 | None:intergenic | 35.0% | |
| ! | GTGTTTGTTAGGTTGCAAAA+CGG | - | chr3_4:58219116-58219135 | Msa0509740:intron | 35.0% |
| AATTCTGGACCATCAAAGTT+GGG | + | chr3_4:58219226-58219245 | None:intergenic | 35.0% | |
| AAATTCTGGACCATCAAAGT+TGG | + | chr3_4:58219227-58219246 | None:intergenic | 35.0% | |
| TGATGGTCCAGAATTTGTAA+AGG | - | chr3_4:58219231-58219250 | Msa0509740:intron | 35.0% | |
| ATGGGAATAATCAGTATGCA+AGG | - | chr3_4:58219278-58219297 | Msa0509740:intron | 35.0% | |
| TGGGAATAATCAGTATGCAA+GGG | - | chr3_4:58219279-58219298 | Msa0509740:intron | 35.0% | |
| GAGAGATTCAAGAAAGATAC+TGG | - | chr3_4:58219337-58219356 | Msa0509740:intron | 35.0% | |
| ACTAAATGTAGACCCTGATA+AGG | - | chr3_4:58219360-58219379 | Msa0509740:intron | 35.0% | |
| ATTAATAAATCCCGGTGATG+AGG | - | chr3_4:58219435-58219454 | Msa0509740:intron | 35.0% | |
| AAACAGAATAACCTCATCAC+CGG | + | chr3_4:58219449-58219468 | None:intergenic | 35.0% | |
| !! | GTGAGGGGTATTTATAAGAA+TGG | + | chr3_4:58219605-58219624 | None:intergenic | 35.0% |
| TTGCATTGAGAATGATGTTC+TGG | - | chr3_4:58219678-58219697 | Msa0509740:intron | 35.0% | |
| ! | TCATAAGTTGGCATTCGATA+TGG | - | chr3_4:58219720-58219739 | Msa0509740:intron | 35.0% |
| !! | ATTTCAATTGCTACTTTGCC+TGG | - | chr3_4:58219748-58219767 | Msa0509740:intron | 35.0% |
| TTACTATGTGGAGCTAAAGA+GGG | - | chr3_4:58219960-58219979 | Msa0509740:intron | 35.0% | |
| ! | TATCGCAAAGAGAGCTATTT+TGG | - | chr3_4:58219987-58220006 | Msa0509740:intron | 35.0% |
| !!! | AAGAGAGCTATTTTGGTTGA+AGG | - | chr3_4:58219994-58220013 | Msa0509740:intron | 35.0% |
| ACAAAAAAGGTTCCATTGGA+CGG | + | chr3_4:58220048-58220067 | None:intergenic | 35.0% | |
| AAGCACAAAAAAGGTTCCAT+TGG | + | chr3_4:58220052-58220071 | None:intergenic | 35.0% | |
| TTTACTTGAATCCAGAAGAG+GGG | - | chr3_4:58220166-58220185 | Msa0509740:intron | 35.0% | |
| ! | TTTCCTTTCTAGTATCCCAA+AGG | - | chr3_4:58220323-58220342 | Msa0509740:intron | 35.0% |
| !! | AAACCTTTGGGATACTAGAA+AGG | + | chr3_4:58220329-58220348 | None:intergenic | 35.0% |
| ATCAAAACAACGACATTCAG+GGG | + | chr3_4:58220379-58220398 | None:intergenic | 35.0% | |
| CATCAAAACAACGACATTCA+GGG | + | chr3_4:58220380-58220399 | None:intergenic | 35.0% | |
| !!! | CTGAATGTCGTTGTTTTGAT+GGG | - | chr3_4:58220379-58220398 | Msa0509740:CDS | 35.0% |
| ! | CTCAGAGGTGGTTTCATTTT+CGG | + | chr3_4:58217168-58217187 | None:intergenic | 40.0% |
| AAAAGAGGATGAACCTGCAA+AGG | + | chr3_4:58217203-58217222 | None:intergenic | 40.0% | |
| ! | TCCGAAAAGTGTAAGGTGAA+AGG | + | chr3_4:58217238-58217257 | None:intergenic | 40.0% |
| ! | CGACTCGACTCGATAATAAT+TGG | - | chr3_4:58217563-58217582 | Msa0509740:CDS | 40.0% |
| CGAGCTGAAAAAAGAGTTTG+TGG | + | chr3_4:58217616-58217635 | None:intergenic | 40.0% | |
| !!! | CTCTTTTTTCAGCTCGAGTT+CGG | - | chr3_4:58217620-58217639 | Msa0509740:CDS | 40.0% |
| ! | TCCAATGGTAGTGTAGCATA+GGG | + | chr3_4:58217770-58217789 | None:intergenic | 40.0% |
| ! | TTCCAATGGTAGTGTAGCAT+AGG | + | chr3_4:58217771-58217790 | None:intergenic | 40.0% |
| !! | TCTCCTTTGAGGTATGATGA+TGG | + | chr3_4:58218017-58218036 | None:intergenic | 40.0% |
| GGAAAGAGTAAAGGCAATGA+AGG | - | chr3_4:58218086-58218105 | Msa0509740:CDS | 40.0% | |
| ! | TATAGATGGTTCGACTCGTT+TGG | + | chr3_4:58218232-58218251 | None:intergenic | 40.0% |
| TAGCTCAAGTTCGACTCATT+AGG | - | chr3_4:58218290-58218309 | Msa0509740:CDS | 40.0% | |
| AACGACGTCTCATCAATGTT+GGG | - | chr3_4:58218419-58218438 | Msa0509740:intron | 40.0% | |
| CTTGAGATGATGAGAGACTT+GGG | - | chr3_4:58218549-58218568 | Msa0509740:intron | 40.0% | |
| AAACCTATGAAGCACGGATA+CGG | + | chr3_4:58218754-58218773 | None:intergenic | 40.0% | |
| GTCTGAACTTCATCATGTGT+CGG | - | chr3_4:58218927-58218946 | Msa0509740:intron | 40.0% | |
| ! | TGTTGGTGTCTGTGCTTTAT+GGG | - | chr3_4:58219029-58219048 | Msa0509740:intron | 40.0% |
| GATGGCAAGCATACTCATTT+GGG | + | chr3_4:58219170-58219189 | None:intergenic | 40.0% | |
| TGATGGCAAGCATACTCATT+TGG | + | chr3_4:58219171-58219190 | None:intergenic | 40.0% | |
| GTTTATAGCTCCATGTGTGA+TGG | + | chr3_4:58219188-58219207 | None:intergenic | 40.0% | |
| ACACATGGAGCTATAAACCT+TGG | - | chr3_4:58219190-58219209 | Msa0509740:intron | 40.0% | |
| GCAGCTTCCTTTACAAATTC+TGG | + | chr3_4:58219241-58219260 | None:intergenic | 40.0% | |
| AAGCTGCAATTCAAGCTATC+AGG | - | chr3_4:58219254-58219273 | Msa0509740:intron | 40.0% | |
| AGCTGCAATTCAAGCTATCA+GGG | - | chr3_4:58219255-58219274 | Msa0509740:intron | 40.0% | |
| CAATTCAAGCTATCAGGGAT+GGG | - | chr3_4:58219260-58219279 | Msa0509740:intron | 40.0% | |
| GGGAATAATCAGTATGCAAG+GGG | - | chr3_4:58219280-58219299 | Msa0509740:intron | 40.0% | |
| ! | AATCAGTATGCAAGGGGTTT+TGG | - | chr3_4:58219286-58219305 | Msa0509740:intron | 40.0% |
| GCAATGACAATGTTGAGATC+TGG | + | chr3_4:58219316-58219335 | None:intergenic | 40.0% | |
| AACAGAATAACCTCATCACC+GGG | + | chr3_4:58219448-58219467 | None:intergenic | 40.0% | |
| !! | TTATGGTGCCACTTTATCCA+TGG | - | chr3_4:58219486-58219505 | Msa0509740:intron | 40.0% |
| ! | TTTTATATTCGCACCAGCCA+TGG | + | chr3_4:58219506-58219525 | None:intergenic | 40.0% |
| TCGACTTCAACTCATCAATC+GGG | + | chr3_4:58219561-58219580 | None:intergenic | 40.0% | |
| ! | GTCGACTTCAACTCATCAAT+CGG | + | chr3_4:58219562-58219581 | None:intergenic | 40.0% |
| TCTTTCCAGTAGGATTGTGA+GGG | + | chr3_4:58219621-58219640 | None:intergenic | 40.0% | |
| ATCTTTCCAGTAGGATTGTG+AGG | + | chr3_4:58219622-58219641 | None:intergenic | 40.0% | |
| ACGGTGACAATGAACTCATT+AGG | - | chr3_4:58219784-58219803 | Msa0509740:intron | 40.0% | |
| CGGTGACAATGAACTCATTA+GGG | - | chr3_4:58219785-58219804 | Msa0509740:intron | 40.0% | |
| AGGGAAGTCATTCTCCTTAA+CGG | - | chr3_4:58219804-58219823 | Msa0509740:intron | 40.0% | |
| AGCACCAGATTCTTACTATG+TGG | - | chr3_4:58219948-58219967 | Msa0509740:intron | 40.0% | |
| AGCTCCACATAGTAAGAATC+TGG | + | chr3_4:58219955-58219974 | None:intergenic | 40.0% | |
| CTTACTATGTGGAGCTAAAG+AGG | - | chr3_4:58219959-58219978 | Msa0509740:intron | 40.0% | |
| TTGAAGGATTGAAGGCTGTT+GGG | - | chr3_4:58220010-58220029 | Msa0509740:intron | 40.0% | |
| CAAAAAAGGTTCCATTGGAC+GGG | + | chr3_4:58220047-58220066 | None:intergenic | 40.0% | |
| GTGATCTGCAAGCACAAAAA+AGG | + | chr3_4:58220061-58220080 | None:intergenic | 40.0% | |
| AGTCAGGTTTACTTTCTGCA+AGG | - | chr3_4:58220197-58220216 | Msa0509740:intron | 40.0% | |
| CAAGGACGAGGAAACTATTA+AGG | - | chr3_4:58220215-58220234 | Msa0509740:intron | 40.0% | |
| CTATTAAGGCTGCTGTTGAA+AGG | - | chr3_4:58220229-58220248 | Msa0509740:intron | 40.0% | |
| CCATCAAAACAACGACATTC+AGG | + | chr3_4:58220381-58220400 | None:intergenic | 40.0% | |
| !!! | CCTGAATGTCGTTGTTTTGA+TGG | - | chr3_4:58220378-58220397 | Msa0509740:CDS | 40.0% |
| !!! | TTGTTTTGATGGGTATGTGC+TGG | - | chr3_4:58220389-58220408 | Msa0509740:exon | 40.0% |
| AATCCCAGAGCTCCAATCTT+CGG | - | chr3_4:58217122-58217141 | Msa0509740:three_prime_UTR | 45.0% | |
| AAACCGAAGATTGGAGCTCT+GGG | + | chr3_4:58217128-58217147 | None:intergenic | 45.0% | |
| GTAGAGTCGAAACCGAAGAT+TGG | + | chr3_4:58217137-58217156 | None:intergenic | 45.0% | |
| ! | AGAGGTGGTTTCATTTTCGG+TGG | + | chr3_4:58217165-58217184 | None:intergenic | 45.0% |
| AGTTCGCGAACTGTTTGGTT+CGG | - | chr3_4:58217652-58217671 | Msa0509740:CDS | 45.0% | |
| TCCCTATGCTACACTACCAT+TGG | - | chr3_4:58217766-58217785 | Msa0509740:CDS | 45.0% | |
| GGTCACTCTATCACTCTCTA+GGG | + | chr3_4:58218393-58218412 | None:intergenic | 45.0% | |
| TGATGAGACGTCGTTCGTAA+CGG | + | chr3_4:58218414-58218433 | None:intergenic | 45.0% | |
| GAACGACGTCTCATCAATGT+TGG | - | chr3_4:58218418-58218437 | Msa0509740:intron | 45.0% | |
| GTCTCATCAATGTTGGGATC+CGG | - | chr3_4:58218425-58218444 | Msa0509740:intron | 45.0% | |
| CGACTAGTAACGCTTCTCAA+TGG | + | chr3_4:58218454-58218473 | None:intergenic | 45.0% | |
| !! | TGAGAAGCGTTACTAGTCGT+TGG | - | chr3_4:58218455-58218474 | Msa0509740:intron | 45.0% |
| GGATCCTCTCCAATTCGTAA+CGG | + | chr3_4:58218483-58218502 | None:intergenic | 45.0% | |
| AAGGAAGGATTCCGCTGAAT+TGG | - | chr3_4:58218509-58218528 | Msa0509740:intron | 45.0% | |
| AGGAAGGATTCCGCTGAATT+GGG | - | chr3_4:58218510-58218529 | Msa0509740:intron | 45.0% | |
| TACACAAAGGCCCAATTCAG+CGG | + | chr3_4:58218523-58218542 | None:intergenic | 45.0% | |
| TGAATTGGGCCTTTGTGTAG+TGG | - | chr3_4:58218524-58218543 | Msa0509740:intron | 45.0% | |
| GAATTGGGCCTTTGTGTAGT+GGG | - | chr3_4:58218525-58218544 | Msa0509740:intron | 45.0% | |
| CCAAGTCTCTCATCATCTCA+AGG | + | chr3_4:58218551-58218570 | None:intergenic | 45.0% | |
| CCTTGAGATGATGAGAGACT+TGG | - | chr3_4:58218548-58218567 | Msa0509740:intron | 45.0% | |
| GCTACATAGAACCAAACCAG+AGG | + | chr3_4:58218883-58218902 | None:intergenic | 45.0% | |
| GTGCCTTCAATGTGAAGTGA+CGG | + | chr3_4:58218907-58218926 | None:intergenic | 45.0% | |
| AGACACCAACACATCGACAT+TGG | + | chr3_4:58219020-58219039 | None:intergenic | 45.0% | |
| ! | GTGTTGGTGTCTGTGCTTTA+TGG | - | chr3_4:58219028-58219047 | Msa0509740:intron | 45.0% |
| AGTATGCTTGCCATCACACA+TGG | - | chr3_4:58219175-58219194 | Msa0509740:intron | 45.0% | |
| TGGAGCTATAAACCTTGGTC+AGG | - | chr3_4:58219195-58219214 | Msa0509740:intron | 45.0% | |
| GGAGCTATAAACCTTGGTCA+GGG | - | chr3_4:58219196-58219215 | Msa0509740:intron | 45.0% | |
| GCAATTCAAGCTATCAGGGA+TGG | - | chr3_4:58219259-58219278 | Msa0509740:intron | 45.0% | |
| GCAATCGCTGCAACTGTATT+AGG | - | chr3_4:58219412-58219431 | Msa0509740:intron | 45.0% | |
| TCAATCGGGACATCGAAATC+TGG | + | chr3_4:58219547-58219566 | None:intergenic | 45.0% | |
| AATACCCCTCACAATCCTAC+TGG | - | chr3_4:58219613-58219632 | Msa0509740:intron | 45.0% | |
| CTTTCCAGTAGGATTGTGAG+GGG | + | chr3_4:58219620-58219639 | None:intergenic | 45.0% | |
| CGAGTGAACATCTTTCCAGT+AGG | + | chr3_4:58219631-58219650 | None:intergenic | 45.0% | |
| TGGAAAGATGTTCACTCGAG+AGG | - | chr3_4:58219633-58219652 | Msa0509740:intron | 45.0% | |
| GGGAAGTCATTCTCCTTAAC+GGG | - | chr3_4:58219805-58219824 | Msa0509740:intron | 45.0% | |
| GGAAGTCATTCTCCTTAACG+GGG | - | chr3_4:58219806-58219825 | Msa0509740:intron | 45.0% | |
| ATTTCCCATCCTTTGCAGTG+TGG | - | chr3_4:58219907-58219926 | Msa0509740:intron | 45.0% | |
| TTTCCCATCCTTTGCAGTGT+GGG | - | chr3_4:58219908-58219927 | Msa0509740:intron | 45.0% | |
| GTTGAAGGATTGAAGGCTGT+TGG | - | chr3_4:58220009-58220028 | Msa0509740:intron | 45.0% | |
| ATTGAAGGCTGTTGGGTTCA+AGG | - | chr3_4:58220017-58220036 | Msa0509740:intron | 45.0% | |
| ! | TTCAAGGTATTCCCGTCCAA+TGG | - | chr3_4:58220033-58220052 | Msa0509740:intron | 45.0% |
| TCTAATTAAGGAGGTCGGTG+TGG | - | chr3_4:58220122-58220141 | Msa0509740:intron | 45.0% | |
| ACTAGATTCTTCCCCTCTTC+TGG | + | chr3_4:58220180-58220199 | None:intergenic | 45.0% | |
| AAGAGGGGAAGAATCTAGTC+AGG | - | chr3_4:58220181-58220200 | Msa0509740:intron | 45.0% | |
| GTTTACTTTCTGCAAGGACG+AGG | - | chr3_4:58220203-58220222 | Msa0509740:intron | 45.0% | |
| !! | ATTGGAGCTCTGGGATTTCG+AGG | + | chr3_4:58217119-58217138 | None:intergenic | 50.0% |
| GAAACCGAAGATTGGAGCTC+TGG | + | chr3_4:58217129-58217148 | None:intergenic | 50.0% | |
| TCAGCCCTATCACTCTCCAA+CGG | + | chr3_4:58217514-58217533 | None:intergenic | 50.0% | |
| ! | GTTCGACTCGTTTGGTTCGT+GGG | + | chr3_4:58218224-58218243 | None:intergenic | 50.0% |
| CGGTCACTCTATCACTCTCT+AGG | + | chr3_4:58218394-58218413 | None:intergenic | 50.0% | |
| TCATCAATGTTGGGATCCGG+CGG | - | chr3_4:58218428-58218447 | Msa0509740:intron | 50.0% | |
| TCGTTGGAGCCGTTACGAAT+TGG | - | chr3_4:58218471-58218490 | Msa0509740:intron | 50.0% | |
| TTGGAGAGGATCCGAGACTA+AGG | - | chr3_4:58218490-58218509 | Msa0509740:intron | 50.0% | |
| AGAGGATCCGAGACTAAGGA+AGG | - | chr3_4:58218494-58218513 | Msa0509740:intron | 50.0% | |
| GCGGAATCCTTCCTTAGTCT+CGG | + | chr3_4:58218504-58218523 | None:intergenic | 50.0% | |
| TCTCAAGGCCCACTACACAA+AGG | + | chr3_4:58218536-58218555 | None:intergenic | 50.0% | |
| !! | TACAAGTGTCGGTGTCGTGT+CGG | + | chr3_4:58218651-58218670 | None:intergenic | 50.0% |
| ATGAAGCACGGATACGGACA+CGG | + | chr3_4:58218748-58218767 | None:intergenic | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | - | chr3_4:58218748-58218767 | Msa0509740:intron | 50.0% | |
| GCTCCGTCACTTCACATTGA+AGG | - | chr3_4:58218901-58218920 | Msa0509740:intron | 50.0% | |
| CAGGGCTTTCCCAACTTTGA+TGG | - | chr3_4:58219214-58219233 | Msa0509740:intron | 50.0% | |
| TCGGGACATCGAAATCTGGA+GGG | + | chr3_4:58219543-58219562 | None:intergenic | 50.0% | |
| ATCGGGACATCGAAATCTGG+AGG | + | chr3_4:58219544-58219563 | None:intergenic | 50.0% | |
| ! | GGCGCGAGTATTCTTTGAGA+TGG | + | chr3_4:58219584-58219603 | None:intergenic | 50.0% |
| CTTTGCCTGGAATGTTCGAG+AGG | - | chr3_4:58219761-58219780 | Msa0509740:intron | 50.0% | |
| AGTCATTCTCCTTAACGGGG+TGG | - | chr3_4:58219809-58219828 | Msa0509740:intron | 50.0% | |
| ATTCTCCTTAACGGGGTGGA+AGG | - | chr3_4:58219813-58219832 | Msa0509740:intron | 50.0% | |
| !! | CATTAAGTGTGGAGGCGCTA+TGG | + | chr3_4:58219848-58219867 | None:intergenic | 50.0% |
| TAGCGCCTCCACACTTAATG+TGG | - | chr3_4:58219848-58219867 | Msa0509740:intron | 50.0% | |
| AGCGCCTCCACACTTAATGT+GGG | - | chr3_4:58219849-58219868 | Msa0509740:intron | 50.0% | |
| ACTCCCCACATTAAGTGTGG+AGG | + | chr3_4:58219856-58219875 | None:intergenic | 50.0% | |
| TTCCCATCCTTTGCAGTGTG+GGG | - | chr3_4:58219909-58219928 | Msa0509740:intron | 50.0% | |
| ! | CTTGCAGATCACACCCCTTT+TGG | - | chr3_4:58220069-58220088 | Msa0509740:intron | 50.0% |
| AATTAAGGAGGTCGGTGTGG+CGG | - | chr3_4:58220125-58220144 | Msa0509740:intron | 50.0% | |
| GGCTGCTGTTGAAAGGATGA+AGG | - | chr3_4:58220236-58220255 | Msa0509740:intron | 50.0% | |
| GGTTTCTGTAGGGACCAGAG+AGG | - | chr3_4:58217486-58217505 | Msa0509740:CDS | 55.0% | |
| AGGAGCCGTTGGAGAGTGAT+AGG | - | chr3_4:58217506-58217525 | Msa0509740:CDS | 55.0% | |
| GGAGCCGTTGGAGAGTGATA+GGG | - | chr3_4:58217507-58217526 | Msa0509740:CDS | 55.0% | |
| ! | GACTCGTTTGGTTCGTGGGT+TGG | + | chr3_4:58218220-58218239 | None:intergenic | 55.0% |
| ! | GGTTCGACTCGTTTGGTTCG+TGG | + | chr3_4:58218225-58218244 | None:intergenic | 55.0% |
| TAACGCTTCTCAATGGCCGC+CGG | + | chr3_4:58218447-58218466 | None:intergenic | 55.0% | |
| GGAGCCGTTACGAATTGGAG+AGG | - | chr3_4:58218476-58218495 | Msa0509740:intron | 55.0% | |
| AGTTGGGAAAGCCCTGACCA+AGG | + | chr3_4:58219210-58219229 | None:intergenic | 55.0% | |
| !! | GGTGCCACTTTATCCATGGC+TGG | - | chr3_4:58219490-58219509 | Msa0509740:intron | 55.0% |
| CGCACCAGCCATGGATAAAG+TGG | + | chr3_4:58219497-58219516 | None:intergenic | 55.0% | |
| GCCTGGAATGTTCGAGAGGA+CGG | - | chr3_4:58219765-58219784 | Msa0509740:intron | 55.0% | |
| ACCGTCCTCTCGAACATTCC+AGG | + | chr3_4:58219769-58219788 | None:intergenic | 55.0% | |
| TCCTTAACGGGGTGGAAGGT+TGG | - | chr3_4:58219817-58219836 | Msa0509740:intron | 55.0% | |
| TCCAACCTTCCACCCCGTTA+AGG | + | chr3_4:58219821-58219840 | None:intergenic | 55.0% | |
| TAACGGGGTGGAAGGTTGGA+TGG | - | chr3_4:58219821-58219840 | Msa0509740:intron | 55.0% | |
| AACGGGGTGGAAGGTTGGAT+GGG | - | chr3_4:58219822-58219841 | Msa0509740:intron | 55.0% | |
| GCGCCTCCACACTTAATGTG+GGG | - | chr3_4:58219850-58219869 | Msa0509740:intron | 55.0% | |
| CGCACTCCCCACATTAAGTG+TGG | + | chr3_4:58219859-58219878 | None:intergenic | 55.0% | |
| ! | CTTAATGTGGGGAGTGCGAC+AGG | - | chr3_4:58219861-58219880 | Msa0509740:intron | 55.0% |
| AGCCCCACACTGCAAAGGAT+GGG | + | chr3_4:58219914-58219933 | None:intergenic | 55.0% | |
| ACTCTCCAACGGCTCCTCTC+TGG | + | chr3_4:58217503-58217522 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | - | chr3_4:58218600-58218619 | Msa0509740:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr3_4:58218606-58218625 | Msa0509740:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | + | chr3_4:58218622-58218641 | None:intergenic | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+CGG | + | chr3_4:58218645-58218664 | None:intergenic | 60.0% |
| GTCAGTGTCCGTGTCGTGTC+TGG | - | chr3_4:58218719-58218738 | Msa0509740:intron | 60.0% | |
| CACGGACACCAGACACGACA+CGG | + | chr3_4:58218730-58218749 | None:intergenic | 60.0% | |
| CAGCCCCACACTGCAAAGGA+TGG | + | chr3_4:58219915-58219934 | None:intergenic | 60.0% | |
| AGGGACCAGAGAGGAGCCGT+TGG | - | chr3_4:58217495-58217514 | Msa0509740:CDS | 65.0% | |
| ACCGGGACACGCCTAATCCG+AGG | + | chr3_4:58218604-58218623 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr3_4:58218621-58218640 | None:intergenic | 65.0% | |
| GCTGCAGCCCCACACTGCAA+AGG | + | chr3_4:58219919-58219938 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 58217020 | 58220537 | 58217020 | ID=Msa0509740;Name=Msa0509740 |
| chr3_4 | mRNA | 58217020 | 58220537 | 58217020 | ID=Msa0509740-mRNA-1;Parent=Msa0509740;Name=Msa0509740-mRNA-1;_AED=0.27;_eAED=0.27;_QI=138|1|1|1|0|0|2|262|399 |
| chr3_4 | exon | 58217020 | 58218430 | 58217020 | ID=Msa0509740-mRNA-1:exon:13505;Parent=Msa0509740-mRNA-1 |
| chr3_4 | exon | 58220349 | 58220537 | 58220349 | ID=Msa0509740-mRNA-1:exon:13504;Parent=Msa0509740-mRNA-1 |
| chr3_4 | five_prime_UTR | 58220400 | 58220537 | 58220400 | ID=Msa0509740-mRNA-1:five_prime_utr;Parent=Msa0509740-mRNA-1 |
| chr3_4 | CDS | 58220349 | 58220399 | 58220349 | ID=Msa0509740-mRNA-1:cds;Parent=Msa0509740-mRNA-1 |
| chr3_4 | CDS | 58217282 | 58218430 | 58217282 | ID=Msa0509740-mRNA-1:cds;Parent=Msa0509740-mRNA-1 |
| chr3_4 | three_prime_UTR | 58217020 | 58217281 | 58217020 | ID=Msa0509740-mRNA-1:three_prime_utr;Parent=Msa0509740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
