Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369980 | XP_024635290.1 | 96.491 | 399 | 14 | 0 | 1 | 399 | 75 | 473 | 0.0 | 806 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369980 | sp|P77806|YBDL_ECOLI | 40.104 | 384 | 228 | 2 | 13 | 395 | 3 | 385 | 1.44e-101 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369980 | G7J331 | 96.491 | 399 | 14 | 0 | 1 | 399 | 4 | 402 | 0.0 | 806 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0369980 | Msa0417390 | 0.937832 | 1.822485e-98 | -8.615850e-47 |
| Msa0369980 | Msa0509740 | 0.838210 | 3.292079e-57 | -8.615850e-47 |
| Msa0369980 | Msa1102790 | -0.817409 | 3.347600e-52 | -8.615850e-47 |
| Msa0369980 | Msa1348470 | 0.801928 | 7.144298e-49 | -8.615850e-47 |
| Msa0369980 | Msa1377570 | -0.813477 | 2.509608e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369980 | MtrunA17_Chr3g0114831 | 96.491 | 399 | 14 | 0 | 1 | 399 | 410 | 808 | 0.0 | 806 |
| Msa0369980 | MtrunA17_Chr3g0114831 | 82.029 | 345 | 37 | 2 | 16 | 360 | 9 | 328 | 0.0 | 568 |
| Msa0369980 | MtrunA17_Chr3g0114811 | 84.935 | 385 | 58 | 0 | 15 | 399 | 61 | 445 | 0.0 | 705 |
| Msa0369980 | MtrunA17_Chr1g0195061 | 38.071 | 394 | 228 | 5 | 17 | 397 | 4 | 394 | 9.09e-82 | 256 |
| Msa0369980 | MtrunA17_Chr7g0267911 | 28.974 | 390 | 253 | 10 | 26 | 397 | 81 | 464 | 9.34e-48 | 169 |
| Msa0369980 | MtrunA17_Chr8g0382671 | 29.487 | 390 | 251 | 10 | 26 | 397 | 83 | 466 | 1.47e-47 | 168 |
| Msa0369980 | MtrunA17_Chr8g0360241 | 24.468 | 376 | 249 | 12 | 43 | 394 | 43 | 407 | 6.46e-23 | 99.8 |
| Msa0369980 | MtrunA17_Chr2g0324801 | 26.243 | 362 | 242 | 12 | 50 | 394 | 22 | 375 | 1.71e-21 | 95.1 |
| Msa0369980 | MtrunA17_Chr4g0004131 | 24.938 | 405 | 259 | 17 | 17 | 399 | 6 | 387 | 2.61e-20 | 92.0 |
| Msa0369980 | MtrunA17_Chr8g0389311 | 26.056 | 284 | 189 | 10 | 78 | 342 | 88 | 369 | 7.54e-14 | 72.8 |
| Msa0369980 | MtrunA17_Chr8g0389321 | 26.056 | 284 | 189 | 10 | 78 | 342 | 88 | 369 | 7.54e-14 | 72.8 |
| Msa0369980 | MtrunA17_Chr6g0462441 | 24.490 | 245 | 163 | 9 | 92 | 331 | 131 | 358 | 1.16e-13 | 72.0 |
| Msa0369980 | MtrunA17_Chr8g0387481 | 22.989 | 348 | 227 | 13 | 78 | 394 | 95 | 432 | 8.02e-13 | 69.7 |
| Msa0369980 | MtrunA17_Chr3g0135251 | 23.934 | 305 | 199 | 9 | 52 | 334 | 69 | 362 | 2.05e-12 | 68.6 |
| Msa0369980 | MtrunA17_Chr6g0475681 | 24.571 | 350 | 238 | 14 | 68 | 395 | 178 | 523 | 7.80e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369980 | AT1G77670.1 | 76.441 | 399 | 90 | 1 | 1 | 399 | 44 | 438 | 0.0 | 667 |
| Msa0369980 | AT2G22250.1 | 29.298 | 413 | 267 | 11 | 4 | 397 | 13 | 419 | 1.77e-53 | 183 |
| Msa0369980 | AT2G22250.3 | 29.298 | 413 | 267 | 11 | 4 | 397 | 60 | 466 | 5.98e-53 | 183 |
| Msa0369980 | AT2G22250.2 | 29.298 | 413 | 267 | 11 | 4 | 397 | 60 | 466 | 5.98e-53 | 183 |
| Msa0369980 | AT5G36160.1 | 25.867 | 375 | 245 | 14 | 43 | 394 | 45 | 409 | 6.43e-26 | 108 |
| Msa0369980 | AT4G28410.1 | 24.866 | 374 | 246 | 11 | 45 | 394 | 73 | 435 | 8.46e-23 | 100 |
| Msa0369980 | AT5G53970.1 | 23.873 | 377 | 250 | 10 | 43 | 394 | 36 | 400 | 2.09e-21 | 95.9 |
| Msa0369980 | AT2G20610.1 | 22.572 | 381 | 261 | 13 | 34 | 394 | 67 | 433 | 2.16e-21 | 96.3 |
| Msa0369980 | AT4G28410.2 | 26.606 | 218 | 153 | 4 | 45 | 256 | 73 | 289 | 1.27e-20 | 93.6 |
| Msa0369980 | AT2G24850.1 | 26.214 | 309 | 206 | 12 | 102 | 394 | 115 | 417 | 7.58e-20 | 91.3 |
| Msa0369980 | AT4G28420.2 | 22.606 | 376 | 263 | 13 | 35 | 393 | 62 | 426 | 1.01e-19 | 90.9 |
| Msa0369980 | AT4G23590.1 | 25.886 | 367 | 219 | 14 | 59 | 394 | 58 | 402 | 2.84e-19 | 89.4 |
| Msa0369980 | AT2G20610.2 | 22.034 | 354 | 247 | 12 | 34 | 367 | 67 | 411 | 1.18e-18 | 87.8 |
| Msa0369980 | AT4G28420.1 | 24.000 | 225 | 163 | 6 | 35 | 256 | 62 | 281 | 2.29e-18 | 86.7 |
| Msa0369980 | AT1G80360.3 | 21.785 | 381 | 265 | 12 | 34 | 399 | 24 | 386 | 5.76e-18 | 85.5 |
| Msa0369980 | AT1G80360.2 | 21.785 | 381 | 265 | 12 | 34 | 399 | 24 | 386 | 5.76e-18 | 85.5 |
| Msa0369980 | AT1G80360.4 | 21.785 | 381 | 265 | 12 | 34 | 399 | 24 | 386 | 5.76e-18 | 85.5 |
| Msa0369980 | AT1G80360.1 | 21.785 | 381 | 265 | 12 | 34 | 399 | 24 | 386 | 5.76e-18 | 85.5 |
| Msa0369980 | AT4G23600.1 | 22.905 | 358 | 241 | 11 | 59 | 394 | 58 | 402 | 5.49e-17 | 82.8 |
| Msa0369980 | AT4G37770.1 | 25.797 | 345 | 222 | 14 | 78 | 394 | 87 | 425 | 3.92e-15 | 77.4 |
| Msa0369980 | AT4G23600.2 | 23.885 | 314 | 198 | 12 | 106 | 394 | 1 | 298 | 4.47e-15 | 75.9 |
| Msa0369980 | AT4G23600.3 | 26.341 | 205 | 138 | 4 | 59 | 256 | 58 | 256 | 5.82e-15 | 76.3 |
| Msa0369980 | AT4G08040.1 | 26.393 | 341 | 222 | 13 | 78 | 394 | 85 | 420 | 1.16e-13 | 72.8 |
| Msa0369980 | AT5G51690.2 | 22.941 | 340 | 236 | 11 | 78 | 395 | 30 | 365 | 3.64e-13 | 70.9 |
| Msa0369980 | AT3G49700.1 | 23.989 | 371 | 239 | 15 | 53 | 395 | 71 | 426 | 3.94e-13 | 71.2 |
| Msa0369980 | AT5G51690.1 | 22.941 | 340 | 236 | 11 | 78 | 395 | 153 | 488 | 6.57e-13 | 70.5 |
| Msa0369980 | AT5G10330.7 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 6.10e-12 | 66.6 |
| Msa0369980 | AT5G10330.6 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 6.10e-12 | 66.6 |
| Msa0369980 | AT5G10330.5 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 6.10e-12 | 66.6 |
| Msa0369980 | AT5G10330.4 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 6.10e-12 | 66.6 |
| Msa0369980 | AT1G71920.5 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 6.10e-12 | 66.6 |
| Msa0369980 | AT1G71920.4 | 23.667 | 300 | 196 | 12 | 92 | 385 | 21 | 293 | 6.10e-12 | 66.6 |
| Msa0369980 | AT5G10330.3 | 23.203 | 306 | 202 | 12 | 86 | 385 | 73 | 351 | 1.02e-11 | 66.2 |
| Msa0369980 | AT5G10330.8 | 23.203 | 306 | 202 | 12 | 86 | 385 | 73 | 351 | 1.02e-11 | 66.2 |
| Msa0369980 | AT1G71920.3 | 23.203 | 306 | 202 | 12 | 86 | 385 | 73 | 351 | 1.02e-11 | 66.2 |
| Msa0369980 | AT5G10330.2 | 23.667 | 300 | 196 | 12 | 92 | 385 | 134 | 406 | 1.08e-11 | 66.6 |
| Msa0369980 | AT5G10330.1 | 23.667 | 300 | 196 | 12 | 92 | 385 | 134 | 406 | 1.08e-11 | 66.6 |
| Msa0369980 | AT1G71920.6 | 23.667 | 300 | 196 | 12 | 92 | 385 | 134 | 406 | 1.08e-11 | 66.6 |
| Msa0369980 | AT1G71920.2 | 23.667 | 300 | 196 | 12 | 92 | 385 | 134 | 406 | 1.08e-11 | 66.6 |
| Msa0369980 | AT2G22810.1 | 24.561 | 342 | 231 | 12 | 78 | 394 | 87 | 426 | 1.13e-11 | 66.6 |
| Msa0369980 | AT1G71920.1 | 23.667 | 300 | 196 | 12 | 92 | 385 | 132 | 404 | 1.20e-11 | 66.2 |
| Msa0369980 | AT4G11280.1 | 23.392 | 342 | 231 | 14 | 78 | 394 | 98 | 433 | 2.39e-11 | 65.9 |
Find 116 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCAACAGCAGCCTTAA+TGG | 0.159575 | 3_1:+67354789 | None:intergenic |
| GCAGCTTCCTTTACAAATTC+TGG | 0.166218 | 3_1:+67355780 | None:intergenic |
| GTAACAGTAATTTCCTTATC+AGG | 0.190896 | 3_1:+67355645 | None:intergenic |
| ACTAGATTCTTCCCCTCTTC+TGG | 0.194253 | 3_1:+67354841 | None:intergenic |
| TATCGCAAAGAGAGCTATTT+TGG | 0.198899 | 3_1:-67355031 | Msa0369980:CDS |
| CTTGCAGATCACACCCCTTT+TGG | 0.237315 | 3_1:-67354949 | Msa0369980:CDS |
| AATCAGTATGCAAGGGGTTT+TGG | 0.252107 | 3_1:-67355732 | Msa0369980:CDS |
| CCATCAAAACAACGACATTC+AGG | 0.272714 | 3_1:+67354640 | None:intergenic |
| GCAATCGCTGCAACTGTATT+AGG | 0.275629 | 3_1:-67355606 | Msa0369980:CDS |
| TTCAAGTAAAATACACTTAA+AGG | 0.276934 | 3_1:+67354865 | None:intergenic |
| CAGGGCTTTCCCAACTTTGA+TGG | 0.277986 | 3_1:-67355804 | Msa0369980:CDS |
| TTGCATTGAGAATGATGTTC+TGG | 0.306322 | 3_1:-67355340 | Msa0369980:CDS |
| AAGCTGCAATTCAAGCTATC+AGG | 0.308373 | 3_1:-67355764 | Msa0369980:CDS |
| GAAAATTCATCATCCTTTGC+AGG | 0.318196 | 3_1:-67357838 | Msa0369980:intron |
| GCACCATAAGAATCATAAAA+AGG | 0.324575 | 3_1:+67355546 | None:intergenic |
| GGGAAGTCATTCTCCTTAAC+GGG | 0.341836 | 3_1:-67355213 | Msa0369980:CDS |
| TCATAAGTTGGCATTCGATA+TGG | 0.360612 | 3_1:-67355298 | Msa0369980:CDS |
| ACGGTGACAATGAACTCATT+AGG | 0.367287 | 3_1:-67355234 | Msa0369980:CDS |
| GAGAGATTCAAGAAAGATAC+TGG | 0.383980 | 3_1:-67355681 | Msa0369980:CDS |
| ACCGTCCTCTCGAACATTCC+AGG | 0.392162 | 3_1:+67355252 | None:intergenic |
| ATTGAAGGCTGTTGGGTTCA+AGG | 0.395573 | 3_1:-67355001 | Msa0369980:CDS |
| AATTACACGAATCAAACCTT+TGG | 0.397311 | 3_1:+67354679 | None:intergenic |
| GTCGACTTCAACTCATCAAT+CGG | 0.398128 | 3_1:+67355459 | None:intergenic |
| ATTTCAATTGCTACTTTGCC+TGG | 0.404821 | 3_1:-67355270 | Msa0369980:CDS |
| TGGAGCTATAAATCTTGGTC+AGG | 0.406588 | 3_1:-67355823 | Msa0369980:CDS |
| TGACGGCAAGCATACTCATT+TGG | 0.411603 | 3_1:+67355850 | None:intergenic |
| CAAGGACGAGGAAACCATTA+AGG | 0.414095 | 3_1:-67354803 | Msa0369980:CDS |
| GAAAACGAAGATTGGAGCTC+TGG | 0.415518 | 3_1:+67357899 | None:intergenic |
| TTTCCCATCCTTTGCAGTGT+GGG | 0.418735 | 3_1:-67355110 | Msa0369980:CDS |
| AGCTCCACATAGTAAGAATC+TGG | 0.422650 | 3_1:+67355066 | None:intergenic |
| GACGGCAAGCATACTCATTT+GGG | 0.428571 | 3_1:+67355851 | None:intergenic |
| AAGGAAATTACTGTTACATC+TGG | 0.429368 | 3_1:-67355639 | Msa0369980:CDS |
| CGGTGACAATGAACTCATTA+GGG | 0.433243 | 3_1:-67355233 | Msa0369980:CDS |
| TCAATCGGGACATCGAAATC+TGG | 0.437458 | 3_1:+67355474 | None:intergenic |
| ATTACACGAATCAAACCTTT+GGG | 0.440457 | 3_1:+67354680 | None:intergenic |
| AGGGAAGTCATTCTCCTTAA+CGG | 0.443160 | 3_1:-67355214 | Msa0369980:CDS |
| GTGAGGGGTATTTATAAGAA+TGG | 0.445966 | 3_1:+67355416 | None:intergenic |
| GCAATGACAATGTTGAGATC+TGG | 0.447498 | 3_1:+67355705 | None:intergenic |
| TCCAACCTTCCACCCCGTTA+AGG | 0.449140 | 3_1:+67355200 | None:intergenic |
| CAGCCCCACACTGCAAAGGA+TGG | 0.450947 | 3_1:+67355106 | None:intergenic |
| TCCTTAACGGGGTGGAAGGT+TGG | 0.453825 | 3_1:-67355201 | Msa0369980:CDS |
| ATAAAATACAATAATATGTC+AGG | 0.457835 | 3_1:-67357950 | Msa0369980:five_prime_UTR |
| TTATGGTGCCACTTTATCCA+TGG | 0.461803 | 3_1:-67355532 | Msa0369980:CDS |
| AATACCCCTCACAATCCTAC+TGG | 0.467702 | 3_1:-67355405 | Msa0369980:CDS |
| GTTGAAGGATTGAAGGCTGT+TGG | 0.468862 | 3_1:-67355009 | Msa0369980:CDS |
| TTGAAGGATTGAAGGCTGTT+GGG | 0.469420 | 3_1:-67355008 | Msa0369980:CDS |
| CTTAATGTGGGGAGTGCGAC+AGG | 0.472336 | 3_1:-67355157 | Msa0369980:CDS |
| AAATTCTGGACCATCAAAGT+TGG | 0.480265 | 3_1:+67355794 | None:intergenic |
| CTTACTATGTGGAGCTAAAG+AGG | 0.481335 | 3_1:-67355059 | Msa0369980:CDS |
| ACACATGGAGCTATAAATCT+TGG | 0.486488 | 3_1:-67355828 | Msa0369980:CDS |
| GGTGCCACTTTATCCATGGC+TGG | 0.493054 | 3_1:-67355528 | Msa0369980:CDS |
| TAACGGGGTGGAAGGTTGGA+TGG | 0.495813 | 3_1:-67355197 | Msa0369980:CDS |
| GCCTGGAATGTTCGAGAGGA+CGG | 0.502694 | 3_1:-67355253 | Msa0369980:CDS |
| AATTCTGGACCATCAAAGTT+GGG | 0.503111 | 3_1:+67355795 | None:intergenic |
| TGATGAAGTGTATCATAAGT+TGG | 0.503345 | 3_1:-67355310 | Msa0369980:CDS |
| AAGAGGGGAAGAATCTAGTC+AGG | 0.503919 | 3_1:-67354837 | Msa0369980:CDS |
| GTAGAGTCGAAAACGAAGAT+TGG | 0.504366 | 3_1:+67357891 | None:intergenic |
| TTCCCATCCTTTGCAGTGTG+GGG | 0.508720 | 3_1:-67355109 | Msa0369980:CDS |
| CATCAAAACAACGACATTCA+GGG | 0.510144 | 3_1:+67354641 | None:intergenic |
| CATTAAGTGTGGAGGCGCTA+TGG | 0.515779 | 3_1:+67355173 | None:intergenic |
| AAACCTTTGGGATACTAGAA+AGG | 0.517804 | 3_1:+67354692 | None:intergenic |
| AGCACCAGATTCTTACTATG+TGG | 0.518355 | 3_1:-67355070 | Msa0369980:CDS |
| CGCACCAGCCATGGATAAAG+TGG | 0.520207 | 3_1:+67355524 | None:intergenic |
| CCATTAAGGCTGCTGTTGAA+AGG | 0.525009 | 3_1:-67354789 | Msa0369980:CDS |
| TAACAGTAATTTCCTTATCA+GGG | 0.528262 | 3_1:+67355646 | None:intergenic |
| ATCTTTCCAGTAGGATTGTG+AGG | 0.528488 | 3_1:+67355399 | None:intergenic |
| ACTAATTGTAGACCCTGATA+AGG | 0.530936 | 3_1:-67355658 | Msa0369980:CDS |
| GGCTCGAGTATTCTTTGAGA+TGG | 0.533306 | 3_1:+67355437 | None:intergenic |
| GTTTACTTTCTGCAAGGACG+AGG | 0.538788 | 3_1:-67354815 | Msa0369980:CDS |
| ATTTCCCATCCTTTGCAGTG+TGG | 0.540019 | 3_1:-67355111 | Msa0369980:CDS |
| TAGCGCCTCCACACTTAATG+TGG | 0.544673 | 3_1:-67355170 | Msa0369980:CDS |
| TTCAAGGTATTCCCGTCCAA+TGG | 0.546743 | 3_1:-67354985 | Msa0369980:CDS |
| GCTGCAGCCCCACACTGCAA+AGG | 0.548860 | 3_1:+67355102 | None:intergenic |
| AGTATGCTTGCCGTCACACA+TGG | 0.552418 | 3_1:-67355843 | Msa0369980:CDS |
| GCAATTCAAGCTATCAGGGA+TGG | 0.556773 | 3_1:-67355759 | Msa0369980:CDS |
| ATTCTCCTTAACGGGGTGGA+AGG | 0.557345 | 3_1:-67355205 | Msa0369980:CDS |
| AAAACGAAGATTGGAGCTCT+GGG | 0.561211 | 3_1:+67357900 | None:intergenic |
| AACGGGGTGGAAGGTTGGAT+GGG | 0.562198 | 3_1:-67355196 | Msa0369980:CDS |
| TGATGGTCCAGAATTTGTAA+AGG | 0.563207 | 3_1:-67355787 | Msa0369980:CDS |
| AGCTGCAATTCAAGCTATCA+GGG | 0.564260 | 3_1:-67355763 | Msa0369980:CDS |
| AAAAGAGGATGAACCTGCAA+AGG | 0.565053 | 3_1:+67357825 | None:intergenic |
| AAACAGAATAACCTCATCAC+CGG | 0.568184 | 3_1:+67355572 | None:intergenic |
| GTGTTTGTTAGGTTGCAAAA+CGG | 0.570636 | 3_1:-67355902 | Msa0369980:intron |
| AGCCCCACACTGCAAAGGAT+GGG | 0.572186 | 3_1:+67355107 | None:intergenic |
| ATGGGAATAATCAGTATGCA+AGG | 0.573797 | 3_1:-67355740 | Msa0369980:CDS |
| CAATTCAAGCTATCAGGGAT+GGG | 0.575114 | 3_1:-67355758 | Msa0369980:CDS |
| CGAGTGAACATCTTTCCAGT+AGG | 0.577547 | 3_1:+67355390 | None:intergenic |
| AGTCAGGTTTACTTTCTGCA+AGG | 0.577645 | 3_1:-67354821 | Msa0369980:CDS |
| CTTCCTTTCTAGTATCCCAA+AGG | 0.577687 | 3_1:-67354695 | Msa0369980:three_prime_UTR |
| TCGACTTCAACTCATCAATC+GGG | 0.583078 | 3_1:+67355460 | None:intergenic |
| AGCGCCTCCACACTTAATGT+GGG | 0.584458 | 3_1:-67355169 | Msa0369980:CDS |
| GTATTAGGATTAATAAATCC+CGG | 0.588469 | 3_1:-67355591 | Msa0369980:CDS |
| ATTAATAAATCCCGGTGATG+AGG | 0.595433 | 3_1:-67355583 | Msa0369980:CDS |
| TCTTTCCAGTAGGATTGTGA+GGG | 0.595542 | 3_1:+67355400 | None:intergenic |
| CGCACTCCCCACATTAAGTG+TGG | 0.602087 | 3_1:+67355162 | None:intergenic |
| TTACTATGTGGAGCTAAAGA+GGG | 0.603840 | 3_1:-67355058 | Msa0369980:CDS |
| ATCGGGACATCGAAATCTGG+AGG | 0.605759 | 3_1:+67355477 | None:intergenic |
| TTGTGAATATCTAATTAAGG+AGG | 0.616139 | 3_1:-67354905 | Msa0369980:CDS |
| TGGAAAGATGTTCACTCGAG+AGG | 0.626679 | 3_1:-67355385 | Msa0369980:CDS |
| ATCAAAACAACGACATTCAG+GGG | 0.632415 | 3_1:+67354642 | None:intergenic |
| ATTTATAGCTCCATGTGTGA+CGG | 0.632626 | 3_1:+67355833 | None:intergenic |
| TGGGAATAATCAGTATGCAA+GGG | 0.635598 | 3_1:-67355739 | Msa0369980:CDS |
| AACAGAATAACCTCATCACC+GGG | 0.636868 | 3_1:+67355573 | None:intergenic |
| CTTTGCCTGGAATGTTCGAG+AGG | 0.637690 | 3_1:-67355257 | Msa0369980:CDS |
| ACTCCCCACATTAAGTGTGG+AGG | 0.638165 | 3_1:+67355165 | None:intergenic |
| GGGAATAATCAGTATGCAAG+GGG | 0.638567 | 3_1:-67355738 | Msa0369980:CDS |
| GGAGCTATAAATCTTGGTCA+GGG | 0.641817 | 3_1:-67355822 | Msa0369980:CDS |
| ATAATCGAGAAAATCTTGTG+TGG | 0.643040 | 3_1:+67357997 | None:intergenic |
| TTTACTTGAATCCAGAAGAG+GGG | 0.646076 | 3_1:-67354852 | Msa0369980:CDS |
| AATTAAGGAGGTCAGTGTGG+CGG | 0.650474 | 3_1:-67354893 | Msa0369980:CDS |
| TCTAATTAAGGAGGTCAGTG+TGG | 0.654919 | 3_1:-67354896 | Msa0369980:CDS |
| AGTCATTCTCCTTAACGGGG+TGG | 0.665949 | 3_1:-67355209 | Msa0369980:CDS |
| TCGGGACATCGAAATCTGGA+GGG | 0.670723 | 3_1:+67355478 | None:intergenic |
| GCGCCTCCACACTTAATGTG+GGG | 0.671863 | 3_1:-67355168 | Msa0369980:CDS |
| CTTTCCAGTAGGATTGTGAG+GGG | 0.686125 | 3_1:+67355401 | None:intergenic |
| GGAAGTCATTCTCCTTAACG+GGG | 0.699032 | 3_1:-67355212 | Msa0369980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTATTTTATTATTTGA+TGG | + | chr3_1:67354550-67354569 | None:intergenic | 10.0% |
| !! | ATAAAATACAATAATATGTC+AGG | - | chr3_1:67354557-67354576 | Msa0369980:three_prime_UTR | 15.0% |
| !!! | ATATTTTCATTTTTAGCTTT+GGG | - | chr3_1:67354847-67354866 | Msa0369980:CDS | 15.0% |
| !! | AATATTTAAAAATGACCTTA+TGG | + | chr3_1:67355642-67355661 | None:intergenic | 15.0% |
| !!! | ATTTTGTGAATATCTAATTA+AGG | - | chr3_1:67357599-67357618 | Msa0369980:intron | 15.0% |
| !!! | CATATTTTCATTTTTAGCTT+TGG | - | chr3_1:67354846-67354865 | Msa0369980:CDS | 20.0% |
| !!! | TATTTTCATTTTTAGCTTTG+GGG | - | chr3_1:67354848-67354867 | Msa0369980:CDS | 20.0% |
| !! | AACAAATATCTTATGAGAAA+AGG | - | chr3_1:67355385-67355404 | Msa0369980:CDS | 20.0% |
| !!! | TTTTTTTTTTTATGGAGACT+TGG | - | chr3_1:67355423-67355442 | Msa0369980:CDS | 20.0% |
| !!! | AATTTGAAATTGGAAATGAA+AGG | - | chr3_1:67355531-67355550 | Msa0369980:CDS | 20.0% |
| !! | TTCAAGTAAAATACACTTAA+AGG | + | chr3_1:67357645-67357664 | None:intergenic | 20.0% |
| ! | TGTAAAAGAAACAGTTACAT+AGG | + | chr3_1:67354828-67354847 | None:intergenic | 25.0% |
| !!! | ATTTTCATTTTTAGCTTTGG+GGG | - | chr3_1:67354849-67354868 | Msa0369980:CDS | 25.0% |
| ! | AATGAAAGCAAATAAACAGT+AGG | + | chr3_1:67354891-67354910 | None:intergenic | 25.0% |
| !! | TTTAAAGTTCATGAACTGTT+TGG | - | chr3_1:67355122-67355141 | Msa0369980:CDS | 25.0% |
| !!! | GCAAATGTTTTTTTATGCTT+CGG | - | chr3_1:67355503-67355522 | Msa0369980:CDS | 25.0% |
| ! | AGTTGAACTTGAATTATAGA+TGG | + | chr3_1:67355712-67355731 | None:intergenic | 25.0% |
| ! | TAAACAATTACTATGTGTTC+TGG | + | chr3_1:67356046-67356065 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | - | chr3_1:67356184-67356203 | Msa0369980:intron | 25.0% |
| ! | TTAAGTAGAAATATGAAGCA+CGG | + | chr3_1:67356251-67356270 | None:intergenic | 25.0% |
| ! | TTCATATTTCATATTTCCTC+TGG | - | chr3_1:67356353-67356372 | Msa0369980:intron | 25.0% |
| ! | CATTGTTAGATAAGATAAAC+AGG | + | chr3_1:67356569-67356588 | None:intergenic | 25.0% |
| ! | TAACAGTAATTTCCTTATCA+GGG | + | chr3_1:67356864-67356883 | None:intergenic | 25.0% |
| ! | GTATTAGGATTAATAAATCC+CGG | - | chr3_1:67356916-67356935 | Msa0369980:intron | 25.0% |
| ! | TTGTGAATATCTAATTAAGG+AGG | - | chr3_1:67357602-67357621 | Msa0369980:intron | 25.0% |
| ATAATCGAGAAAATCTTGTG+TGG | + | chr3_1:67354513-67354532 | None:intergenic | 30.0% | |
| ! | TCCTTTCACCTTATACTTTT+CGG | - | chr3_1:67354709-67354728 | Msa0369980:three_prime_UTR | 30.0% |
| ! | AAATGGATCCGAAAAGTATA+AGG | + | chr3_1:67354720-67354739 | None:intergenic | 30.0% |
| ATAAACAGTAGGTCAAATTG+AGG | + | chr3_1:67354880-67354899 | None:intergenic | 30.0% | |
| CACTCTTTATAATTGCATTG+TGG | - | chr3_1:67354930-67354949 | Msa0369980:CDS | 30.0% | |
| AATTGCATTGTGGTAAATGA+TGG | - | chr3_1:67354940-67354959 | Msa0369980:CDS | 30.0% | |
| ! | AATTGGTTTAGTACGAAACT+CGG | - | chr3_1:67355055-67355074 | Msa0369980:CDS | 30.0% |
| !! | TGAGTTTGATTTGAGATTCT+TGG | + | chr3_1:67355261-67355280 | None:intergenic | 30.0% |
| !!! | AATGTTTTTTTATGCTTCGG+TGG | - | chr3_1:67355506-67355525 | Msa0369980:CDS | 30.0% |
| AATTGGAAATGAAAGGAAAG+AGG | - | chr3_1:67355538-67355557 | Msa0369980:CDS | 30.0% | |
| AGTTAAACTTTCTACTTCCT+AGG | - | chr3_1:67355585-67355604 | Msa0369980:CDS | 30.0% | |
| !!! | TTCCTAGGTTTTTTAAGAAG+AGG | - | chr3_1:67355600-67355619 | Msa0369980:CDS | 30.0% |
| TTCCTCTTCTTAAAAAACCT+AGG | + | chr3_1:67355605-67355624 | None:intergenic | 30.0% | |
| GACAATTATTCTGTTGGATT+TGG | + | chr3_1:67355790-67355809 | None:intergenic | 30.0% | |
| TGATTCGACAATTATTCTGT+TGG | + | chr3_1:67355796-67355815 | None:intergenic | 30.0% | |
| ATTTCGAACTAAATTCGAGT+TGG | - | chr3_1:67355817-67355836 | Msa0369980:CDS | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | + | chr3_1:67356153-67356172 | None:intergenic | 30.0% | |
| ATTTCATATTTCCTCTGGTT+TGG | - | chr3_1:67356358-67356377 | Msa0369980:intron | 30.0% | |
| ! | CATCGACATTGGTAATAATA+TGG | + | chr3_1:67356498-67356517 | None:intergenic | 30.0% |
| GATAAGATAAACAGGTACTA+AGG | + | chr3_1:67356561-67356580 | None:intergenic | 30.0% | |
| AATTAAGCCATGTGTTTGTT+AGG | - | chr3_1:67356594-67356613 | Msa0369980:intron | 30.0% | |
| GTAACAGTAATTTCCTTATC+AGG | + | chr3_1:67356865-67356884 | None:intergenic | 30.0% | |
| AAGGAAATTACTGTTACATC+TGG | - | chr3_1:67356868-67356887 | Msa0369980:intron | 30.0% | |
| ! | GCTCCTTTTTATGATTCTTA+TGG | - | chr3_1:67356958-67356977 | Msa0369980:intron | 30.0% |
| GCACCATAAGAATCATAAAA+AGG | + | chr3_1:67356964-67356983 | None:intergenic | 30.0% | |
| TGATGAAGTGTATCATAAGT+TGG | - | chr3_1:67357197-67357216 | Msa0369980:intron | 30.0% | |
| !!! | TATTTTGGTTGAAGGATTGA+AGG | - | chr3_1:67357491-67357510 | Msa0369980:intron | 30.0% |
| ! | ATCATTTTCATGTCCAAAAG+GGG | + | chr3_1:67357574-67357593 | None:intergenic | 30.0% |
| ! | CATCATTTTCATGTCCAAAA+GGG | + | chr3_1:67357575-67357594 | None:intergenic | 30.0% |
| ! | ACATCATTTTCATGTCCAAA+AGG | + | chr3_1:67357576-67357595 | None:intergenic | 30.0% |
| ! | ATTTTACTTGAATCCAGAAG+AGG | - | chr3_1:67357653-67357672 | Msa0369980:intron | 30.0% |
| ! | TTTTACTTGAATCCAGAAGA+GGG | - | chr3_1:67357654-67357673 | Msa0369980:intron | 30.0% |
| ATTACACGAATCAAACCTTT+GGG | + | chr3_1:67357830-67357849 | None:intergenic | 30.0% | |
| AATTACACGAATCAAACCTT+TGG | + | chr3_1:67357831-67357850 | None:intergenic | 30.0% | |
| ! | ATGATGAATTTTCTCAGAGG+TGG | + | chr3_1:67354662-67354681 | None:intergenic | 35.0% |
| ! | AGGATGATGAATTTTCTCAG+AGG | + | chr3_1:67354665-67354684 | None:intergenic | 35.0% |
| GAAAATTCATCATCCTTTGC+AGG | - | chr3_1:67354669-67354688 | Msa0369980:three_prime_UTR | 35.0% | |
| AGGTGAAAGGAATTGAAAAG+AGG | + | chr3_1:67354700-67354719 | None:intergenic | 35.0% | |
| ! | TCCGAAAAGTATAAGGTGAA+AGG | + | chr3_1:67354713-67354732 | None:intergenic | 35.0% |
| TGGTAAATGATGGTTTCTGT+AGG | - | chr3_1:67354950-67354969 | Msa0369980:CDS | 35.0% | |
| !!! | CTTTTTTTTCAGCTCGAGTT+CGG | - | chr3_1:67355095-67355114 | Msa0369980:CDS | 35.0% |
| AGTTCATGAACTGTTTGGTT+CGG | - | chr3_1:67355127-67355146 | Msa0369980:CDS | 35.0% | |
| TTGAGATTCTTGGATTCCAA+TGG | + | chr3_1:67355251-67355270 | None:intergenic | 35.0% | |
| AAAACATTTGCTCTCCTTTG+AGG | + | chr3_1:67355494-67355513 | None:intergenic | 35.0% | |
| ! | TTCGGTGGAGAATTTGAAAT+TGG | - | chr3_1:67355521-67355540 | Msa0369980:CDS | 35.0% |
| GAAATGAAAGGAAAGAGGAA+AGG | - | chr3_1:67355543-67355562 | Msa0369980:CDS | 35.0% | |
| ACTGAAACGTTTAAGCCATA+AGG | - | chr3_1:67355624-67355643 | Msa0369980:CDS | 35.0% | |
| !! | GAACTAAATTCGAGTTGGTT+CGG | - | chr3_1:67355822-67355841 | Msa0369980:CDS | 35.0% |
| !! | TCAGTTTCTAGTATGAAGCA+CGG | - | chr3_1:67356075-67356094 | Msa0369980:intron | 35.0% |
| AGAAATATGAAGCACGGATA+CGG | + | chr3_1:67356245-67356264 | None:intergenic | 35.0% | |
| TATTACCAATGTCGATGTGT+TGG | - | chr3_1:67356501-67356520 | Msa0369980:intron | 35.0% | |
| TTTGCAACCTAACAAACACA+TGG | + | chr3_1:67356604-67356623 | None:intergenic | 35.0% | |
| ! | GTGTTTGTTAGGTTGCAAAA+CGG | - | chr3_1:67356605-67356624 | Msa0369980:intron | 35.0% |
| ATTTATAGCTCCATGTGTGA+CGG | + | chr3_1:67356677-67356696 | None:intergenic | 35.0% | |
| ACACATGGAGCTATAAATCT+TGG | - | chr3_1:67356679-67356698 | Msa0369980:intron | 35.0% | |
| AATTCTGGACCATCAAAGTT+GGG | + | chr3_1:67356715-67356734 | None:intergenic | 35.0% | |
| AAATTCTGGACCATCAAAGT+TGG | + | chr3_1:67356716-67356735 | None:intergenic | 35.0% | |
| TGATGGTCCAGAATTTGTAA+AGG | - | chr3_1:67356720-67356739 | Msa0369980:intron | 35.0% | |
| ATGGGAATAATCAGTATGCA+AGG | - | chr3_1:67356767-67356786 | Msa0369980:intron | 35.0% | |
| TGGGAATAATCAGTATGCAA+GGG | - | chr3_1:67356768-67356787 | Msa0369980:intron | 35.0% | |
| GAGAGATTCAAGAAAGATAC+TGG | - | chr3_1:67356826-67356845 | Msa0369980:intron | 35.0% | |
| ACTAATTGTAGACCCTGATA+AGG | - | chr3_1:67356849-67356868 | Msa0369980:intron | 35.0% | |
| ATTAATAAATCCCGGTGATG+AGG | - | chr3_1:67356924-67356943 | Msa0369980:intron | 35.0% | |
| AAACAGAATAACCTCATCAC+CGG | + | chr3_1:67356938-67356957 | None:intergenic | 35.0% | |
| !! | GTGAGGGGTATTTATAAGAA+TGG | + | chr3_1:67357094-67357113 | None:intergenic | 35.0% |
| TTGCATTGAGAATGATGTTC+TGG | - | chr3_1:67357167-67357186 | Msa0369980:intron | 35.0% | |
| ! | TCATAAGTTGGCATTCGATA+TGG | - | chr3_1:67357209-67357228 | Msa0369980:intron | 35.0% |
| !! | ATTTCAATTGCTACTTTGCC+TGG | - | chr3_1:67357237-67357256 | Msa0369980:intron | 35.0% |
| TTACTATGTGGAGCTAAAGA+GGG | - | chr3_1:67357449-67357468 | Msa0369980:intron | 35.0% | |
| ! | TATCGCAAAGAGAGCTATTT+TGG | - | chr3_1:67357476-67357495 | Msa0369980:intron | 35.0% |
| !!! | AAGAGAGCTATTTTGGTTGA+AGG | - | chr3_1:67357483-67357502 | Msa0369980:intron | 35.0% |
| ACAAAAAAGGTTCCATTGGA+CGG | + | chr3_1:67357537-67357556 | None:intergenic | 35.0% | |
| AAGCACAAAAAAGGTTCCAT+TGG | + | chr3_1:67357541-67357560 | None:intergenic | 35.0% | |
| TTTACTTGAATCCAGAAGAG+GGG | - | chr3_1:67357655-67357674 | Msa0369980:intron | 35.0% | |
| !! | AAACCTTTGGGATACTAGAA+AGG | + | chr3_1:67357818-67357837 | None:intergenic | 35.0% |
| ATCAAAACAACGACATTCAG+GGG | + | chr3_1:67357868-67357887 | None:intergenic | 35.0% | |
| CATCAAAACAACGACATTCA+GGG | + | chr3_1:67357869-67357888 | None:intergenic | 35.0% | |
| !!! | CTGAATGTCGTTGTTTTGAT+GGG | - | chr3_1:67357868-67357887 | Msa0369980:CDS | 35.0% |
| AAAACGAAGATTGGAGCTCT+GGG | + | chr3_1:67354610-67354629 | None:intergenic | 40.0% | |
| GTAGAGTCGAAAACGAAGAT+TGG | + | chr3_1:67354619-67354638 | None:intergenic | 40.0% | |
| ! | CTCAGAGGTGGTTTCATTTT+CGG | + | chr3_1:67354650-67354669 | None:intergenic | 40.0% |
| AAAAGAGGATGAACCTGCAA+AGG | + | chr3_1:67354685-67354704 | None:intergenic | 40.0% | |
| GATAGCATAGCAGCAGTAAA+TGG | + | chr3_1:67354737-67354756 | None:intergenic | 40.0% | |
| ! | CGACTCGACTCGATAATAAT+TGG | - | chr3_1:67355038-67355057 | Msa0369980:CDS | 40.0% |
| ! | TCCAATGGTAGTGTAGCATA+GGG | + | chr3_1:67355236-67355255 | None:intergenic | 40.0% |
| ! | TTCCAATGGTAGTGTAGCAT+AGG | + | chr3_1:67355237-67355256 | None:intergenic | 40.0% |
| CGAATACCATCATACCTCAA+AGG | - | chr3_1:67355477-67355496 | Msa0369980:CDS | 40.0% | |
| ! | TATAGATGGTTCGACTCGTT+TGG | + | chr3_1:67355698-67355717 | None:intergenic | 40.0% |
| TAGCTCAAGTTCGACTCATT+AGG | - | chr3_1:67355756-67355775 | Msa0369980:CDS | 40.0% | |
| AACGACGTCTCATCAATGTT+GGG | - | chr3_1:67355885-67355904 | Msa0369980:CDS | 40.0% | |
| CTTGAGATGATGAGAGACTT+GGG | - | chr3_1:67356015-67356034 | Msa0369980:intron | 40.0% | |
| !! | GTAATTACAAGTGTCGGTGT+CGG | + | chr3_1:67356147-67356166 | None:intergenic | 40.0% |
| GTCTGAACTTCATCATGTGT+CGG | - | chr3_1:67356416-67356435 | Msa0369980:intron | 40.0% | |
| ! | TGTTGGTGTCTGTGCTTAAT+GGG | - | chr3_1:67356518-67356537 | Msa0369980:intron | 40.0% |
| TGGAGCTATAAATCTTGGTC+AGG | - | chr3_1:67356684-67356703 | Msa0369980:intron | 40.0% | |
| GGAGCTATAAATCTTGGTCA+GGG | - | chr3_1:67356685-67356704 | Msa0369980:intron | 40.0% | |
| GCAGCTTCCTTTACAAATTC+TGG | + | chr3_1:67356730-67356749 | None:intergenic | 40.0% | |
| AAGCTGCAATTCAAGCTATC+AGG | - | chr3_1:67356743-67356762 | Msa0369980:intron | 40.0% | |
| AGCTGCAATTCAAGCTATCA+GGG | - | chr3_1:67356744-67356763 | Msa0369980:intron | 40.0% | |
| CAATTCAAGCTATCAGGGAT+GGG | - | chr3_1:67356749-67356768 | Msa0369980:intron | 40.0% | |
| GGGAATAATCAGTATGCAAG+GGG | - | chr3_1:67356769-67356788 | Msa0369980:intron | 40.0% | |
| ! | AATCAGTATGCAAGGGGTTT+TGG | - | chr3_1:67356775-67356794 | Msa0369980:intron | 40.0% |
| GCAATGACAATGTTGAGATC+TGG | + | chr3_1:67356805-67356824 | None:intergenic | 40.0% | |
| AACAGAATAACCTCATCACC+GGG | + | chr3_1:67356937-67356956 | None:intergenic | 40.0% | |
| !! | TTATGGTGCCACTTTATCCA+TGG | - | chr3_1:67356975-67356994 | Msa0369980:intron | 40.0% |
| ! | TTTTATATTCGCACCAGCCA+TGG | + | chr3_1:67356995-67357014 | None:intergenic | 40.0% |
| TCGACTTCAACTCATCAATC+GGG | + | chr3_1:67357050-67357069 | None:intergenic | 40.0% | |
| ! | GTCGACTTCAACTCATCAAT+CGG | + | chr3_1:67357051-67357070 | None:intergenic | 40.0% |
| TCTTTCCAGTAGGATTGTGA+GGG | + | chr3_1:67357110-67357129 | None:intergenic | 40.0% | |
| ATCTTTCCAGTAGGATTGTG+AGG | + | chr3_1:67357111-67357130 | None:intergenic | 40.0% | |
| ACGGTGACAATGAACTCATT+AGG | - | chr3_1:67357273-67357292 | Msa0369980:intron | 40.0% | |
| CGGTGACAATGAACTCATTA+GGG | - | chr3_1:67357274-67357293 | Msa0369980:intron | 40.0% | |
| AGGGAAGTCATTCTCCTTAA+CGG | - | chr3_1:67357293-67357312 | Msa0369980:intron | 40.0% | |
| AGCACCAGATTCTTACTATG+TGG | - | chr3_1:67357437-67357456 | Msa0369980:intron | 40.0% | |
| AGCTCCACATAGTAAGAATC+TGG | + | chr3_1:67357444-67357463 | None:intergenic | 40.0% | |
| CTTACTATGTGGAGCTAAAG+AGG | - | chr3_1:67357448-67357467 | Msa0369980:intron | 40.0% | |
| TTGAAGGATTGAAGGCTGTT+GGG | - | chr3_1:67357499-67357518 | Msa0369980:intron | 40.0% | |
| CAAAAAAGGTTCCATTGGAC+GGG | + | chr3_1:67357536-67357555 | None:intergenic | 40.0% | |
| GTGATCTGCAAGCACAAAAA+AGG | + | chr3_1:67357550-67357569 | None:intergenic | 40.0% | |
| TCTAATTAAGGAGGTCAGTG+TGG | - | chr3_1:67357611-67357630 | Msa0369980:intron | 40.0% | |
| AGTCAGGTTTACTTTCTGCA+AGG | - | chr3_1:67357686-67357705 | Msa0369980:intron | 40.0% | |
| ! | CTTCCTTTCTAGTATCCCAA+AGG | - | chr3_1:67357812-67357831 | Msa0369980:intron | 40.0% |
| CCATCAAAACAACGACATTC+AGG | + | chr3_1:67357870-67357889 | None:intergenic | 40.0% | |
| !!! | CCTGAATGTCGTTGTTTTGA+TGG | - | chr3_1:67357867-67357886 | Msa0369980:CDS | 40.0% |
| !!! | TTGTTTTGATGGGTATGTGC+TGG | - | chr3_1:67357878-67357897 | Msa0369980:exon | 40.0% |
| !!! | ATTGGAGCTCTGGGATTTTG+AGG | + | chr3_1:67354601-67354620 | None:intergenic | 45.0% |
| GAAAACGAAGATTGGAGCTC+TGG | + | chr3_1:67354611-67354630 | None:intergenic | 45.0% | |
| ! | GGTTTCATTTTCGGTGGACA+TGG | + | chr3_1:67354641-67354660 | None:intergenic | 45.0% |
| ! | AGAGGTGGTTTCATTTTCGG+TGG | + | chr3_1:67354647-67354666 | None:intergenic | 45.0% |
| TCAGCCGTATCATTCTCCAA+CGG | + | chr3_1:67354989-67355008 | None:intergenic | 45.0% | |
| TCCCTATGCTACACTACCAT+TGG | - | chr3_1:67355232-67355251 | Msa0369980:CDS | 45.0% | |
| !! | TGCTCTCCTTTGAGGTATGA+TGG | + | chr3_1:67355486-67355505 | None:intergenic | 45.0% |
| GGAAAGAGGAAAGGCAATGA+AGG | - | chr3_1:67355552-67355571 | Msa0369980:CDS | 45.0% | |
| GGTCACTCTATCACTCTCTA+GGG | + | chr3_1:67355859-67355878 | None:intergenic | 45.0% | |
| TGATGAGACGTCGTTCGTAA+CGG | + | chr3_1:67355880-67355899 | None:intergenic | 45.0% | |
| GAACGACGTCTCATCAATGT+TGG | - | chr3_1:67355884-67355903 | Msa0369980:CDS | 45.0% | |
| GTCTCATCAATGTTGGGATC+CGG | - | chr3_1:67355891-67355910 | Msa0369980:CDS | 45.0% | |
| CGACTAGTAACGCTTCTCAA+TGG | + | chr3_1:67355920-67355939 | None:intergenic | 45.0% | |
| !! | TGAGAAGCGTTACTAGTCGT+TGG | - | chr3_1:67355921-67355940 | Msa0369980:intron | 45.0% |
| GGATCCTCTCCAATTCGTAA+CGG | + | chr3_1:67355949-67355968 | None:intergenic | 45.0% | |
| AAGGAAGGATTCCGCTGAAT+TGG | - | chr3_1:67355975-67355994 | Msa0369980:intron | 45.0% | |
| AGGAAGGATTCCGCTGAATT+GGG | - | chr3_1:67355976-67355995 | Msa0369980:intron | 45.0% | |
| TACACAAAGGCCCAATTCAG+CGG | + | chr3_1:67355989-67356008 | None:intergenic | 45.0% | |
| TGAATTGGGCCTTTGTGTAG+TGG | - | chr3_1:67355990-67356009 | Msa0369980:intron | 45.0% | |
| GAATTGGGCCTTTGTGTAGT+GGG | - | chr3_1:67355991-67356010 | Msa0369980:intron | 45.0% | |
| CCAAGTCTCTCATCATCTCA+AGG | + | chr3_1:67356017-67356036 | None:intergenic | 45.0% | |
| CCTTGAGATGATGAGAGACT+TGG | - | chr3_1:67356014-67356033 | Msa0369980:intron | 45.0% | |
| GCTACATAGAACCAAACCAG+AGG | + | chr3_1:67356372-67356391 | None:intergenic | 45.0% | |
| GTGCCTTCAATGTGAAGTGA+CGG | + | chr3_1:67356396-67356415 | None:intergenic | 45.0% | |
| AGACACCAACACATCGACAT+TGG | + | chr3_1:67356509-67356528 | None:intergenic | 45.0% | |
| ! | GTGTTGGTGTCTGTGCTTAA+TGG | - | chr3_1:67356517-67356536 | Msa0369980:intron | 45.0% |
| GACGGCAAGCATACTCATTT+GGG | + | chr3_1:67356659-67356678 | None:intergenic | 45.0% | |
| TGACGGCAAGCATACTCATT+TGG | + | chr3_1:67356660-67356679 | None:intergenic | 45.0% | |
| GCAATTCAAGCTATCAGGGA+TGG | - | chr3_1:67356748-67356767 | Msa0369980:intron | 45.0% | |
| GCAATCGCTGCAACTGTATT+AGG | - | chr3_1:67356901-67356920 | Msa0369980:intron | 45.0% | |
| TCAATCGGGACATCGAAATC+TGG | + | chr3_1:67357036-67357055 | None:intergenic | 45.0% | |
| ! | GGCTCGAGTATTCTTTGAGA+TGG | + | chr3_1:67357073-67357092 | None:intergenic | 45.0% |
| AATACCCCTCACAATCCTAC+TGG | - | chr3_1:67357102-67357121 | Msa0369980:intron | 45.0% | |
| CTTTCCAGTAGGATTGTGAG+GGG | + | chr3_1:67357109-67357128 | None:intergenic | 45.0% | |
| CGAGTGAACATCTTTCCAGT+AGG | + | chr3_1:67357120-67357139 | None:intergenic | 45.0% | |
| TGGAAAGATGTTCACTCGAG+AGG | - | chr3_1:67357122-67357141 | Msa0369980:intron | 45.0% | |
| GGGAAGTCATTCTCCTTAAC+GGG | - | chr3_1:67357294-67357313 | Msa0369980:intron | 45.0% | |
| GGAAGTCATTCTCCTTAACG+GGG | - | chr3_1:67357295-67357314 | Msa0369980:intron | 45.0% | |
| ATTTCCCATCCTTTGCAGTG+TGG | - | chr3_1:67357396-67357415 | Msa0369980:intron | 45.0% | |
| TTTCCCATCCTTTGCAGTGT+GGG | - | chr3_1:67357397-67357416 | Msa0369980:intron | 45.0% | |
| GTTGAAGGATTGAAGGCTGT+TGG | - | chr3_1:67357498-67357517 | Msa0369980:intron | 45.0% | |
| ATTGAAGGCTGTTGGGTTCA+AGG | - | chr3_1:67357506-67357525 | Msa0369980:intron | 45.0% | |
| ! | TTCAAGGTATTCCCGTCCAA+TGG | - | chr3_1:67357522-67357541 | Msa0369980:intron | 45.0% |
| AATTAAGGAGGTCAGTGTGG+CGG | - | chr3_1:67357614-67357633 | Msa0369980:intron | 45.0% | |
| ACTAGATTCTTCCCCTCTTC+TGG | + | chr3_1:67357669-67357688 | None:intergenic | 45.0% | |
| AAGAGGGGAAGAATCTAGTC+AGG | - | chr3_1:67357670-67357689 | Msa0369980:intron | 45.0% | |
| GTTTACTTTCTGCAAGGACG+AGG | - | chr3_1:67357692-67357711 | Msa0369980:intron | 45.0% | |
| CAAGGACGAGGAAACCATTA+AGG | - | chr3_1:67357704-67357723 | Msa0369980:intron | 45.0% | |
| CCTTTCAACAGCAGCCTTAA+TGG | + | chr3_1:67357721-67357740 | None:intergenic | 45.0% | |
| CCATTAAGGCTGCTGTTGAA+AGG | - | chr3_1:67357718-67357737 | Msa0369980:intron | 45.0% | |
| !!! | TATGTTTTTTTTTTTTTTTA+TGG | - | chr3_1:67355415-67355434 | Msa0369980:CDS | 5.0% |
| GGAGCCGTTGGAGAATGATA+CGG | - | chr3_1:67354982-67355001 | Msa0369980:CDS | 50.0% | |
| ! | GTTCGACTCGTTTGGTTCGT+GGG | + | chr3_1:67355690-67355709 | None:intergenic | 50.0% |
| CGGTCACTCTATCACTCTCT+AGG | + | chr3_1:67355860-67355879 | None:intergenic | 50.0% | |
| TCATCAATGTTGGGATCCGG+CGG | - | chr3_1:67355894-67355913 | Msa0369980:CDS | 50.0% | |
| TCGTTGGAGCCGTTACGAAT+TGG | - | chr3_1:67355937-67355956 | Msa0369980:intron | 50.0% | |
| TTGGAGAGGATCCGAGACTA+AGG | - | chr3_1:67355956-67355975 | Msa0369980:intron | 50.0% | |
| AGAGGATCCGAGACTAAGGA+AGG | - | chr3_1:67355960-67355979 | Msa0369980:intron | 50.0% | |
| GCGGAATCCTTCCTTAGTCT+CGG | + | chr3_1:67355970-67355989 | None:intergenic | 50.0% | |
| TCTCAAGGCCCACTACACAA+AGG | + | chr3_1:67356002-67356021 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+TGG | - | chr3_1:67356086-67356105 | Msa0369980:intron | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | + | chr3_1:67356239-67356258 | None:intergenic | 50.0% | |
| GCTCCGTCACTTCACATTGA+AGG | - | chr3_1:67356390-67356409 | Msa0369980:intron | 50.0% | |
| AGTATGCTTGCCGTCACACA+TGG | - | chr3_1:67356664-67356683 | Msa0369980:intron | 50.0% | |
| CAGGGCTTTCCCAACTTTGA+TGG | - | chr3_1:67356703-67356722 | Msa0369980:intron | 50.0% | |
| TCGGGACATCGAAATCTGGA+GGG | + | chr3_1:67357032-67357051 | None:intergenic | 50.0% | |
| ATCGGGACATCGAAATCTGG+AGG | + | chr3_1:67357033-67357052 | None:intergenic | 50.0% | |
| CTTTGCCTGGAATGTTCGAG+AGG | - | chr3_1:67357250-67357269 | Msa0369980:intron | 50.0% | |
| AGTCATTCTCCTTAACGGGG+TGG | - | chr3_1:67357298-67357317 | Msa0369980:intron | 50.0% | |
| ATTCTCCTTAACGGGGTGGA+AGG | - | chr3_1:67357302-67357321 | Msa0369980:intron | 50.0% | |
| !! | CATTAAGTGTGGAGGCGCTA+TGG | + | chr3_1:67357337-67357356 | None:intergenic | 50.0% |
| TAGCGCCTCCACACTTAATG+TGG | - | chr3_1:67357337-67357356 | Msa0369980:intron | 50.0% | |
| AGCGCCTCCACACTTAATGT+GGG | - | chr3_1:67357338-67357357 | Msa0369980:intron | 50.0% | |
| ACTCCCCACATTAAGTGTGG+AGG | + | chr3_1:67357345-67357364 | None:intergenic | 50.0% | |
| TTCCCATCCTTTGCAGTGTG+GGG | - | chr3_1:67357398-67357417 | Msa0369980:intron | 50.0% | |
| ! | CTTGCAGATCACACCCCTTT+TGG | - | chr3_1:67357558-67357577 | Msa0369980:intron | 50.0% |
| GGTTTCTGTAGGCACCAGAG+TGG | - | chr3_1:67354961-67354980 | Msa0369980:CDS | 55.0% | |
| ATTCTCCAACGGCTCCACTC+TGG | + | chr3_1:67354978-67354997 | None:intergenic | 55.0% | |
| ! | GACTCGTTTGGTTCGTGGGT+TGG | + | chr3_1:67355686-67355705 | None:intergenic | 55.0% |
| ! | GGTTCGACTCGTTTGGTTCG+TGG | + | chr3_1:67355691-67355710 | None:intergenic | 55.0% |
| TAACGCTTCTCAATGGCCGC+CGG | + | chr3_1:67355913-67355932 | None:intergenic | 55.0% | |
| GGAGCCGTTACGAATTGGAG+AGG | - | chr3_1:67355942-67355961 | Msa0369980:intron | 55.0% | |
| GCACGGACACTCCTTGGATT+AGG | - | chr3_1:67356092-67356111 | Msa0369980:intron | 55.0% | |
| ACTGGGACACGCCTAATCCA+AGG | + | chr3_1:67356106-67356125 | None:intergenic | 55.0% | |
| GATTAGGCGTGTCCCAGTGT+CGG | - | chr3_1:67356108-67356127 | Msa0369980:intron | 55.0% | |
| CACGACACATGTCCGACACT+GGG | + | chr3_1:67356123-67356142 | None:intergenic | 55.0% | |
| ACACGACACATGTCCGACAC+TGG | + | chr3_1:67356124-67356143 | None:intergenic | 55.0% | |
| !! | GGTGCCACTTTATCCATGGC+TGG | - | chr3_1:67356979-67356998 | Msa0369980:intron | 55.0% |
| CGCACCAGCCATGGATAAAG+TGG | + | chr3_1:67356986-67357005 | None:intergenic | 55.0% | |
| GCCTGGAATGTTCGAGAGGA+CGG | - | chr3_1:67357254-67357273 | Msa0369980:intron | 55.0% | |
| ACCGTCCTCTCGAACATTCC+AGG | + | chr3_1:67357258-67357277 | None:intergenic | 55.0% | |
| TCCTTAACGGGGTGGAAGGT+TGG | - | chr3_1:67357306-67357325 | Msa0369980:intron | 55.0% | |
| TCCAACCTTCCACCCCGTTA+AGG | + | chr3_1:67357310-67357329 | None:intergenic | 55.0% | |
| TAACGGGGTGGAAGGTTGGA+TGG | - | chr3_1:67357310-67357329 | Msa0369980:intron | 55.0% | |
| AACGGGGTGGAAGGTTGGAT+GGG | - | chr3_1:67357311-67357330 | Msa0369980:intron | 55.0% | |
| GCGCCTCCACACTTAATGTG+GGG | - | chr3_1:67357339-67357358 | Msa0369980:intron | 55.0% | |
| CGCACTCCCCACATTAAGTG+TGG | + | chr3_1:67357348-67357367 | None:intergenic | 55.0% | |
| ! | CTTAATGTGGGGAGTGCGAC+AGG | - | chr3_1:67357350-67357369 | Msa0369980:intron | 55.0% |
| AGCCCCACACTGCAAAGGAT+GGG | + | chr3_1:67357403-67357422 | None:intergenic | 55.0% | |
| GTCAGTGTCCGTGTCGTGTC+TGG | - | chr3_1:67356210-67356229 | Msa0369980:intron | 60.0% | |
| CACGGACACCAGACACGACA+CGG | + | chr3_1:67356221-67356240 | None:intergenic | 60.0% | |
| CAGCCCCACACTGCAAAGGA+TGG | + | chr3_1:67357404-67357423 | None:intergenic | 60.0% | |
| AGGCACCAGAGTGGAGCCGT+TGG | - | chr3_1:67354970-67354989 | Msa0369980:CDS | 65.0% | |
| GCTGCAGCCCCACACTGCAA+AGG | + | chr3_1:67357408-67357427 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 67354503 | 67358026 | 67354503 | ID=Msa0369980;Name=Msa0369980 |
| chr3_1 | mRNA | 67354503 | 67358026 | 67354503 | ID=Msa0369980-mRNA-1;Parent=Msa0369980;Name=Msa0369980-mRNA-1;_AED=0.27;_eAED=0.27;_QI=137|1|1|1|0|0|2|262|399 |
| chr3_1 | exon | 67354503 | 67355913 | 67354503 | ID=Msa0369980-mRNA-1:exon:13908;Parent=Msa0369980-mRNA-1 |
| chr3_1 | exon | 67357839 | 67358026 | 67357839 | ID=Msa0369980-mRNA-1:exon:13907;Parent=Msa0369980-mRNA-1 |
| chr3_1 | five_prime_UTR | 67357890 | 67358026 | 67357890 | ID=Msa0369980-mRNA-1:five_prime_utr;Parent=Msa0369980-mRNA-1 |
| chr3_1 | CDS | 67357839 | 67357889 | 67357839 | ID=Msa0369980-mRNA-1:cds;Parent=Msa0369980-mRNA-1 |
| chr3_1 | CDS | 67354765 | 67355913 | 67354765 | ID=Msa0369980-mRNA-1:cds;Parent=Msa0369980-mRNA-1 |
| chr3_1 | three_prime_UTR | 67354503 | 67354764 | 67354503 | ID=Msa0369980-mRNA-1:three_prime_utr;Parent=Msa0369980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
