AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0419010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419010 MtrunA17_Chr3g0116641 92.287 752 41 3 63 798 1 751 0.0 1412
Msa0419010 MtrunA17_Chr1g0173521 49.346 764 340 8 49 785 38 781 0.0 721
Msa0419010 MtrunA17_Chr5g0447201 46.941 752 362 9 63 785 1 744 0.0 698
Msa0419010 MtrunA17_Chr4g0064311 45.007 751 357 11 63 786 98 819 0.0 650
Msa0419010 MtrunA17_Chr7g0257731 50.000 600 256 6 227 785 2 598 0.0 591
Msa0419010 MtrunA17_Chr3g0117141 36.902 794 416 17 61 798 22 786 5.52e-173 518
Msa0419010 MtrunA17_Chr6g0449521 37.450 753 396 17 71 774 37 763 4.87e-165 497
Msa0419010 MtrunA17_Chr4g0058701 35.806 782 423 17 70 798 23 778 2.66e-164 495
Msa0419010 MtrunA17_Chr1g0201161 32.500 640 320 13 85 635 58 674 2.22e-100 331
Msa0419010 MtrunA17_Chr1g0201161 28.856 201 104 8 626 798 734 923 4.76e-13 73.2
Msa0419010 MtrunA17_Chr7g0267991 37.360 447 240 9 369 785 407 843 9.53e-86 290
Msa0419010 MtrunA17_Chr7g0267991 34.091 264 149 3 85 342 54 298 4.44e-41 162
Msa0419010 MtrunA17_Chr8g0380141 36.567 402 225 9 297 672 312 709 6.88e-72 249
Msa0419010 MtrunA17_Chr8g0380141 32.959 267 148 4 85 342 53 297 7.89e-41 160
Msa0419010 MtrunA17_Chr7g0270181 35.799 338 190 5 465 780 12 344 1.14e-59 206
Msa0419010 MtrunA17_Chr5g0427081 46.154 143 56 4 576 699 10 150 1.10e-31 121
Msa0419010 MtrunA17_Chr7g0257741 40.000 155 78 2 63 213 1 144 4.25e-30 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419010 AT3G57520.1 49.481 770 329 9 63 785 1 757 0.0 783
Msa0419010 AT3G57520.2 51.274 667 287 7 63 704 1 654 0.0 717
Msa0419010 AT1G55740.1 48.404 752 346 9 63 785 1 739 0.0 682
Msa0419010 AT3G57520.3 53.968 567 243 4 63 624 1 554 0.0 655
Msa0419010 AT5G20250.4 44.681 752 371 12 62 786 95 828 0.0 641
Msa0419010 AT5G20250.3 44.740 751 370 12 63 786 1 733 0.0 640
Msa0419010 AT5G20250.1 44.740 751 370 12 63 786 1 733 0.0 640
Msa0419010 AT5G20250.2 44.740 751 370 12 63 786 1 733 0.0 640
Msa0419010 AT5G40390.1 37.356 779 420 16 70 798 23 783 1.93e-170 511
Msa0419010 AT4G01970.1 36.123 454 248 13 365 783 412 858 1.31e-80 277
Msa0419010 AT4G01970.1 35.088 285 142 4 83 343 49 314 6.18e-44 171
Msa0419010 AT4G01970.2 36.123 454 248 13 365 783 459 905 2.48e-80 277
Msa0419010 AT4G01970.2 35.088 285 142 4 83 343 96 361 6.09e-44 171

Find 189 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACAGTCTGCTGAAAATT+TGG 0.133304 3_2:-66915883 Msa0419010:intron
TACTCGAGATTGTTTGTTTC+AGG 0.138623 3_2:-66916016 Msa0419010:CDS
CTAATGTTTCTATCAAATTT+TGG 0.150455 3_2:+66916777 None:intergenic
CATTCTCTTCTTGCCTGTTT+TGG 0.169995 3_2:-66918088 Msa0419010:CDS
CCGACACACTTAACCATTTC+AGG 0.207056 3_2:-66915776 Msa0419010:CDS
GCCTTCACCATCAAGTTTAA+TGG 0.214336 3_2:+66914968 None:intergenic
AAGAAGGTTGGTTAATTTAT+AGG 0.228856 3_2:+66918825 None:intergenic
AATGAAGTTGAGAATGTTAA+AGG 0.234661 3_2:+66918739 None:intergenic
TTTCTGTCATCTTGAAAATA+AGG 0.241361 3_2:-66917677 Msa0419010:CDS
AGAAGGTTGGTTAATTTATA+GGG 0.248956 3_2:+66918826 None:intergenic
CCTGTACATCTTGATTTGTT+TGG 0.257621 3_2:-66917649 Msa0419010:CDS
ACAACTCTGATTCAATTTAC+AGG 0.265456 3_2:-66916646 Msa0419010:intron
GCATGCTTTAGCTGGTTATT+GGG 0.271441 3_2:-66917020 Msa0419010:CDS
CATATGTATAAACAGGTATT+TGG 0.294074 3_2:-66915215 Msa0419010:intron
GGCATGCTTTAGCTGGTTAT+TGG 0.294226 3_2:-66917021 Msa0419010:CDS
GGCAGAGGATGTGGCCGATT+TGG 0.301018 3_2:-66915077 Msa0419010:CDS
TTCCTAATGACATAGGATAT+TGG 0.303139 3_2:-66917716 Msa0419010:intron
GTTGTTTCACCTGTTTCAGC+TGG 0.311923 3_2:-66918574 Msa0419010:CDS
CTTTATTTAGAGTCAAAATA+TGG 0.313807 3_2:-66918257 Msa0419010:CDS
GTCTACAAACATGACTATTT+CGG 0.314200 3_2:-66918671 Msa0419010:CDS
TACTGGGTTCCTTCAATTAT+CGG 0.317199 3_2:+66917354 None:intergenic
AGGCACTCGTCCTTCACTTT+AGG 0.317254 3_2:+66918643 None:intergenic
GAGGGACATTTGTGAGAATC+AGG 0.326336 3_2:+66918605 None:intergenic
ATCCAGTAATGGATGGTAAA+AGG 0.326549 3_2:-66915993 Msa0419010:intron
AACAAGGCTGATAGACATTA+AGG 0.327395 3_2:-66917247 Msa0419010:CDS
CAAAATTTGATAGAAACATT+AGG 0.332651 3_2:-66916776 Msa0419010:CDS
GAGGCAGTATTTGTAAATTC+AGG 0.334499 3_2:-66917857 Msa0419010:CDS
TTGATAGAAACATTAGGTTC+AGG 0.347566 3_2:-66916770 Msa0419010:CDS
TTGCTTGACATGTACAATTC+AGG 0.347876 3_2:-66915164 Msa0419010:CDS
CATATGCAATTTGCGCCAAT+TGG 0.348061 3_2:-66915188 Msa0419010:CDS
GTGGTTTCCGATGGTTTCAT+TGG 0.349098 3_2:+66915800 None:intergenic
AAAGGATAGTTGAATTTGTT+AGG 0.360007 3_2:+66918757 None:intergenic
TATATACAGTATCTCCAATC+AGG 0.361816 3_2:-66915326 Msa0419010:CDS
GAATCTTTGATTAGCTCAAA+TGG 0.384220 3_2:+66917827 None:intergenic
TAATCCATCTTCAGAGTTGT+AGG 0.389057 3_2:+66914995 None:intergenic
AACCACTTTCAACGCAGAAT+TGG 0.394094 3_2:+66918019 None:intergenic
GAGAGATATTTGTGCCAGAC+TGG 0.399133 3_2:-66916418 Msa0419010:CDS
GTATGCTTACGATAGGAGTT+AGG 0.400367 3_2:+66914856 None:intergenic
GTGGAACCAGCTGACTGAAT+TGG 0.406736 3_2:+66916941 None:intergenic
ACATGTAAGGTTTGAAATGT+TGG 0.411578 3_2:+66916473 None:intergenic
ATTTGAGGTGGGGTGGAAGA+AGG 0.415764 3_2:+66918809 None:intergenic
GTTTGAAATGTTGGTTCCCT+TGG 0.415913 3_2:+66916482 None:intergenic
TTGGCCAGCTTCCTGCTCCT+TGG 0.418002 3_2:+66915819 None:intergenic
AATAAGCTGACTGGGGTCAT+AGG 0.419910 3_2:-66915854 Msa0419010:CDS
TGTCCATGGCTATATCTCTA+AGG 0.420570 3_2:+66916912 None:intergenic
TTACTGACCATTAAACTTGA+TGG 0.421279 3_2:-66914975 Msa0419010:CDS
CATGCAGCAGCAAGAGCAAT+AGG 0.421395 3_2:-66916262 Msa0419010:CDS
AGATATAGCCATGGACAGCC+TGG 0.423263 3_2:-66916906 Msa0419010:CDS
AAGTTTATCATCGTTGATGA+TGG 0.424891 3_2:-66917417 Msa0419010:CDS
AACAAGAATCGACTTTCGCT+TGG 0.426536 3_2:+66914898 None:intergenic
AGTGAAGGACGAGTGCCTTA+TGG 0.427110 3_2:-66918638 Msa0419010:CDS
CGAAAGGCTCCATCCAAAAC+AGG 0.427176 3_2:+66918075 None:intergenic
GTCTTTAATTGCCAAGGAGC+AGG 0.431429 3_2:-66915830 Msa0419010:CDS
TAGAAGAATTGTCCTGCATA+AGG 0.432028 3_2:-66915133 Msa0419010:CDS
AAAGCAGACCCAGCTGAAAC+AGG 0.434640 3_2:+66918565 None:intergenic
TGAATTGGATATACAAGCTT+CGG 0.437132 3_2:+66916956 None:intergenic
ATTTGTTTGGATGGTGCACT+TGG 0.437449 3_2:-66917636 Msa0419010:CDS
GAGTTTCTTCAAGAGGTTGC+TGG 0.438427 3_2:-66915731 Msa0419010:intron
GAGGTGGGGTGGAAGAAGGT+TGG 0.439759 3_2:+66918813 None:intergenic
AGGAAAATTAGAAGTATCCT+TGG 0.441630 3_2:-66915367 Msa0419010:CDS
GTGGTTGTGCAGTATATGTT+AGG 0.445136 3_2:-66916240 Msa0419010:intron
GTCATAACACCAACCCTGAT+TGG 0.447307 3_2:+66915312 None:intergenic
TGATAGAAACATTAGGTTCA+GGG 0.448878 3_2:-66916769 Msa0419010:CDS
ATTCAGTCAGCTGGTTCCAC+AGG 0.456336 3_2:-66916938 Msa0419010:CDS
AAGAAGCTAGTACTACCTAA+TGG 0.457727 3_2:-66916072 Msa0419010:CDS
CTTGCTAGCTGTGGCGTCGA+TGG 0.462315 3_2:-66916815 Msa0419010:CDS
TACATCTTGATTTGTTTGGA+TGG 0.464444 3_2:-66917645 Msa0419010:CDS
AGCTACCGACGCAACATGTA+AGG 0.465646 3_2:+66916460 None:intergenic
GCTCTCAAGACTGATCCATT+AGG 0.466280 3_2:+66916057 None:intergenic
TACATGTGGCATGCTTTAGC+TGG 0.471549 3_2:-66917028 Msa0419010:CDS
TTGTTTCACCTGTTTCAGCT+GGG 0.471827 3_2:-66918573 Msa0419010:CDS
ACAAGAATCGACTTTCGCTT+GGG 0.471958 3_2:+66914899 None:intergenic
TTGTATCGTATGGAGGAAAC+AGG 0.473708 3_2:+66918976 None:intergenic
GTATATCCAATTCAGTCAGC+TGG 0.476978 3_2:-66916947 Msa0419010:CDS
ATTGCCAAGGAGCAGGAAGC+TGG 0.478211 3_2:-66915823 Msa0419010:CDS
AGGCAGTATTTGTAAATTCA+GGG 0.482966 3_2:-66917856 Msa0419010:CDS
CCAAACAAATCAAGATGTAC+AGG 0.483982 3_2:+66917649 None:intergenic
ATGACACGTTCTCATTCTAA+AGG 0.486566 3_2:-66914739 Msa0419010:three_prime_UTR
CTATTGCTCTTGCTGCTGCA+TGG 0.489450 3_2:+66916263 None:intergenic
TCAGGTTGCCCCTCACCATA+AGG 0.490694 3_2:+66918623 None:intergenic
CATTGGAGTACGCTCCAAAT+CGG 0.495713 3_2:+66915063 None:intergenic
AAGTTGCTTGGTGGACATGC+AGG 0.496836 3_2:-66915030 Msa0419010:CDS
ACATGACGGGAACTAGGAAT+AGG 0.497061 3_2:+66918526 None:intergenic
AGAAGCAATTGAGTTTCCAT+TGG 0.497684 3_2:+66918195 None:intergenic
CTCCAATTCTGCGTTGAAAG+TGG 0.497807 3_2:-66918021 Msa0419010:intron
ACTTGGAACATGTCCCAGTC+TGG 0.497856 3_2:+66916404 None:intergenic
GTCTTGAGAGCAAGATATGC+TGG 0.497867 3_2:-66916045 Msa0419010:CDS
TCTTCACCCTCGGCACTCTC+CGG 0.499147 3_2:-66918504 Msa0419010:intron
GCCTTTCGCGCAACTTTGCA+AGG 0.499278 3_2:-66918060 Msa0419010:CDS
CATGCTTTAGCTGGTTATTG+GGG 0.500822 3_2:-66917019 Msa0419010:CDS
TCCCGTCATGTCTTCACCCT+CGG 0.502127 3_2:-66918514 Msa0419010:CDS
AACATCAAAGGCAGAGGATG+TGG 0.504719 3_2:-66915086 Msa0419010:CDS
TCCTTGCAAAGTTGCGCGAA+AGG 0.505821 3_2:+66918059 None:intergenic
GTGAAGACATGACGGGAACT+AGG 0.507395 3_2:+66918520 None:intergenic
GAGATTGTTGCAAGAACTGT+TGG 0.507789 3_2:+66917197 None:intergenic
GGAAGTAGTGGACAAACAAC+TGG 0.509057 3_2:+66918942 None:intergenic
TTTGTTTCAGGATCCAGTAA+TGG 0.516931 3_2:-66916004 Msa0419010:CDS
TCATCAACGATGATAAACTT+TGG 0.518122 3_2:+66917420 None:intergenic
TGCAGTAGCAAGAGCATCTG+AGG 0.518388 3_2:-66916513 Msa0419010:CDS
ATTTGCAGCATCCCTTATGC+AGG 0.524518 3_2:+66915121 None:intergenic
GCTTTAGCTGGTTATTGGGG+AGG 0.526230 3_2:-66917016 Msa0419010:CDS
GGAACTTGAATAAGCTGACT+GGG 0.528230 3_2:-66915862 Msa0419010:CDS
AGAAGAATTGTCCTGCATAA+GGG 0.528389 3_2:-66915132 Msa0419010:CDS
GGAAACTCAATTGCTTCTAG+TGG 0.531099 3_2:-66918190 Msa0419010:CDS
TACATGTCAAGCAATCCAAT+TGG 0.532755 3_2:+66915173 None:intergenic
GAAGGCGAACCGATAATTGA+AGG 0.534207 3_2:-66917363 Msa0419010:CDS
AATTTACAAATACTGCCTCA+TGG 0.536522 3_2:+66917861 None:intergenic
TGATGTTGAGTTTCTTCAAG+AGG 0.537617 3_2:-66915738 Msa0419010:CDS
GGATTGTGAAGTTTGAACAT+AGG 0.539175 3_2:+66917883 None:intergenic
GATGGTTGTATTGTATCGTA+TGG 0.540127 3_2:+66918966 None:intergenic
GGTGGATGATACCACGTGTT+GGG 0.540503 3_2:-66918236 Msa0419010:CDS
TGGAACTTGAATAAGCTGAC+TGG 0.542627 3_2:-66915863 Msa0419010:CDS
CTTGGTGGACATGCAGGAGA+AGG 0.542712 3_2:-66915024 Msa0419010:CDS
TTATCATCGTTGATGATGGA+TGG 0.546645 3_2:-66917413 Msa0419010:CDS
CACAGTTATCTTGCTAGCTG+TGG 0.548683 3_2:-66916824 Msa0419010:CDS
TGAAGAAACTCAACATCAAG+TGG 0.552805 3_2:+66915743 None:intergenic
ATTTACAAATACTGCCTCAT+GGG 0.552987 3_2:+66917862 None:intergenic
TGATAGAGTCAATAAAATCA+TGG 0.554811 3_2:+66917175 None:intergenic
TTGTATAATTTGAGGTGGGG+TGG 0.555423 3_2:+66918802 None:intergenic
AAATCCACAAGGAATAAAAG+AGG 0.555557 3_2:-66917593 Msa0419010:CDS
ATGATGAATTGTATAATTTG+AGG 0.556594 3_2:+66918794 None:intergenic
AATTTGAAGTTCAGAAGTGA+TGG 0.558269 3_2:-66917222 Msa0419010:CDS
TGAATTGTATAATTTGAGGT+GGG 0.558321 3_2:+66918798 None:intergenic
TTTCAGGATCCAGTAATGGA+TGG 0.559262 3_2:-66916000 Msa0419010:CDS
TTCCATTGGAACATCGCTTG+CGG 0.560083 3_2:+66918209 None:intergenic
GGACGAGTGCCTTATGGTGA+GGG 0.560118 3_2:-66918632 Msa0419010:CDS
TGTTAGACCGAAAAGTTGCT+TGG 0.562615 3_2:-66915042 Msa0419010:CDS
ATGCATTACAGTGATAAGCC+TGG 0.563441 3_2:-66916117 Msa0419010:intron
ATCCGCAAGCGATGTTCCAA+TGG 0.563712 3_2:-66918211 Msa0419010:CDS
TTGATGGTGAAGGCAACTCA+AGG 0.563996 3_2:-66914959 Msa0419010:CDS
CCTGAAATGGTTAAGTGTGT+CGG 0.565716 3_2:+66915776 None:intergenic
TTCGGTTGTACCTAAAGTGA+AGG 0.566143 3_2:-66918653 Msa0419010:CDS
TGTGTCGGTGTGGTTTCCGA+TGG 0.566607 3_2:+66915791 None:intergenic
GACATAGAATTTGTATTCTG+AGG 0.570441 3_2:-66914936 Msa0419010:exon
CTTTCCAAGCTGCCTAGTAG+AGG 0.571601 3_2:-66915387 Msa0419010:CDS
TGCCGAGGGTGAAGACATGA+CGG 0.575394 3_2:+66918512 None:intergenic
AGGTTGGTTAATTTATAGGG+AGG 0.575908 3_2:+66918829 None:intergenic
TAGACCGAAAAGTTGCTTGG+TGG 0.578729 3_2:-66915039 Msa0419010:CDS
GAATTGTATAATTTGAGGTG+GGG 0.579051 3_2:+66918799 None:intergenic
ATGAATTGTATAATTTGAGG+TGG 0.584893 3_2:+66918797 None:intergenic
AGAGATATTTGTGCCAGACT+GGG 0.590054 3_2:-66916417 Msa0419010:CDS
ATCTGAGGATTTCATGCCAA+GGG 0.592867 3_2:-66916498 Msa0419010:CDS
TGCACAATAGTAAACATCAA+AGG 0.596912 3_2:-66915098 Msa0419010:CDS
GACTCACCGGAGAGTGCCGA+GGG 0.597740 3_2:+66918498 None:intergenic
TTTGTTTGGATGGTGCACTT+GGG 0.600213 3_2:-66917635 Msa0419010:CDS
TGTGAGACATGCAACAAATG+AGG 0.600971 3_2:+66916666 None:intergenic
GAATAAAAGAGGGCATTCAA+AGG 0.601533 3_2:-66917582 Msa0419010:intron
TATTTAGAGTCAAAATATGG+TGG 0.602078 3_2:-66918254 Msa0419010:CDS
TTAAACAGTCTCTCAAGTGG+AGG 0.605758 3_2:-66917450 Msa0419010:intron
GAAACATTAGGTTCAGGGTG+CGG 0.606140 3_2:-66916764 Msa0419010:CDS
ACATTAGGTTCAGGGTGCGG+TGG 0.606763 3_2:-66916761 Msa0419010:CDS
ATAGTAAACATCAAAGGCAG+AGG 0.608568 3_2:-66915092 Msa0419010:CDS
AACAGGCAAGAAGAGAATGT+AGG 0.609281 3_2:+66918092 None:intergenic
AGACTCACCGGAGAGTGCCG+AGG 0.610924 3_2:+66918497 None:intergenic
ACCATTAAACTTGATGGTGA+AGG 0.612381 3_2:-66914969 Msa0419010:CDS
TTCACATTGAAGAGTCTCCA+AGG 0.612594 3_2:+66915350 None:intergenic
TTTGTAGAGCAAGCACGAGA+CGG 0.614843 3_2:-66916293 Msa0419010:intron
AGGACGAGTGCCTTATGGTG+AGG 0.621258 3_2:-66918633 Msa0419010:CDS
AATATGTTAGGTTTGCAACA+AGG 0.621827 3_2:-66917263 Msa0419010:intron
ATATACAGTATCTCCAATCA+GGG 0.622646 3_2:-66915325 Msa0419010:intron
GGCAGTATTTGTAAATTCAG+GGG 0.622919 3_2:-66917855 Msa0419010:CDS
ATAGGCGTCTTTAATTGCCA+AGG 0.624613 3_2:-66915836 Msa0419010:CDS
TTCAGTCAGCTGGTTCCACA+GGG 0.625466 3_2:-66916937 Msa0419010:CDS
AATCCACAAGGAATAAAAGA+GGG 0.625484 3_2:-66917592 Msa0419010:CDS
GCCGAGGGTGAAGACATGAC+GGG 0.627661 3_2:+66918513 None:intergenic
TCCGCAGATACGTTTACATG+TGG 0.628225 3_2:-66917042 Msa0419010:intron
GAATTGGAGCTCGTTTAACG+CGG 0.628314 3_2:+66918035 None:intergenic
CATTAGAGACATCAATAGCA+AGG 0.628449 3_2:-66916706 Msa0419010:CDS
CATCTGAGGATTTCATGCCA+AGG 0.631175 3_2:-66916499 Msa0419010:CDS
AAATTAAACAGTCTCTCAAG+TGG 0.633332 3_2:-66917453 Msa0419010:intron
ACAAACAATCTCGAGTAGGA+CGG 0.638323 3_2:+66916022 None:intergenic
CTTGACATGTACAATTCAGG+AGG 0.640277 3_2:-66915161 Msa0419010:CDS
CTTGCGGATTTCCCAACACG+TGG 0.644530 3_2:+66918225 None:intergenic
GGTTGTATTGTATCGTATGG+AGG 0.647377 3_2:+66918969 None:intergenic
TGAAACAAACAATCTCGAGT+AGG 0.658675 3_2:+66916018 None:intergenic
TGATGGTGAAGGCAACTCAA+GGG 0.660992 3_2:-66914958 Msa0419010:CDS
TCAAACCTTACATGTTGCGT+CGG 0.663563 3_2:-66916465 Msa0419010:CDS
AAGCTGGCCAATGAAACCAT+CGG 0.665066 3_2:-66915807 Msa0419010:CDS
GACGAGTGCCTTATGGTGAG+GGG 0.667610 3_2:-66918631 Msa0419010:CDS
TACACTAAAGTAAATCCACA+AGG 0.677457 3_2:-66917604 Msa0419010:CDS
TGGTGGATGATACCACGTGT+TGG 0.678677 3_2:-66918237 Msa0419010:CDS
AGTGGACAAACAACTGGTGA+TGG 0.681464 3_2:+66918948 None:intergenic
GAACCTTAGAGATATAGCCA+TGG 0.685161 3_2:-66916915 Msa0419010:CDS
AGGATATTGGAGAAACACAA+AGG 0.687687 3_2:-66917703 Msa0419010:CDS
AATGGTTAAGTGTGTCGGTG+TGG 0.693578 3_2:+66915781 None:intergenic
GAACTTGAATAAGCTGACTG+GGG 0.696242 3_2:-66915861 Msa0419010:CDS
GCAGCAGCAAGAGCAATAGG+TGG 0.714549 3_2:-66916259 Msa0419010:CDS
TCAAACTTCACAATCCCATG+AGG 0.752833 3_2:-66917876 Msa0419010:CDS
TATATCTCTAAGGTTCCCTG+TGG 0.766010 3_2:+66916922 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATTAATACAATTAAAA+AGG + chr3_2:66917550-66917569 None:intergenic 10.0%
!! TGTATTTAAAAAAATATGCA+GGG - chr3_2:66915416-66915435 Msa0419010:intron 15.0%
!!! TAAAAGTCATAAAATTTTGA+TGG + chr3_2:66916858-66916877 None:intergenic 15.0%
!! ATAAGCACTTAAATATATAA+AGG - chr3_2:66918227-66918246 Msa0419010:CDS 15.0%
!! TAAGCACTTAAATATATAAA+GGG - chr3_2:66918228-66918247 Msa0419010:CDS 15.0%
!!! TTTTATAACATTATTAGACT+TGG + chr3_2:66918471-66918490 None:intergenic 15.0%
!!! TCTTTGAATTCTTTTTTATT+TGG + chr3_2:66919004-66919023 None:intergenic 15.0%
!! CTTAACAAATTAAAAAACGT+TGG - chr3_2:66914829-66914848 Msa0419010:three_prime_UTR 20.0%
!! ATGATGAATTGTATAATTTG+AGG + chr3_2:66914921-66914940 None:intergenic 20.0%
!! TTCATTATTAGCTAACTTAT+CGG + chr3_2:66915317-66915336 None:intergenic 20.0%
!! CTCATTGAATTAATATACTA+AGG + chr3_2:66915371-66915390 None:intergenic 20.0%
!! GTGTATTTAAAAAAATATGC+AGG - chr3_2:66915415-66915434 Msa0419010:intron 20.0%
!! GTATTTAAAAAAATATGCAG+GGG - chr3_2:66915417-66915436 Msa0419010:intron 20.0%
!! TATTTAAAAAAATATGCAGG+GGG - chr3_2:66915418-66915437 Msa0419010:intron 20.0%
!!! CTTTATTTAGAGTCAAAATA+TGG - chr3_2:66915455-66915474 Msa0419010:intron 20.0%
!!! ATTTTTATTCCTAATGACAT+AGG - chr3_2:66915989-66916008 Msa0419010:intron 20.0%
!!! TACAATGAATTTTTCAAAGA+AGG - chr3_2:66916331-66916350 Msa0419010:intron 20.0%
!!! CACATCTTTTATAATATGTT+AGG - chr3_2:66916437-66916456 Msa0419010:CDS 20.0%
!!! CTAATGTTTCTATCAAATTT+TGG + chr3_2:66916938-66916957 None:intergenic 20.0%
!! CAAAATTTGATAGAAACATT+AGG - chr3_2:66916936-66916955 Msa0419010:CDS 20.0%
!!! TACAATTAAAAAGGTTTTTG+CGG + chr3_2:66917541-66917560 None:intergenic 20.0%
!! GTAAAGAATCGATAATAATA+TGG + chr3_2:66917814-66917833 None:intergenic 20.0%
!! AGGTTTGAATGTTAAATTTA+GGG - chr3_2:66918046-66918065 Msa0419010:CDS 20.0%
!! ATGTTAACATATGTATAAAC+AGG - chr3_2:66918490-66918509 Msa0419010:intron 20.0%
!!! AATTTTTCATTGTACCAAAA+AGG - chr3_2:66918884-66918903 Msa0419010:five_prime_UTR 20.0%
!! AGAAGGTTGGTTAATTTATA+GGG + chr3_2:66914889-66914908 None:intergenic 25.0%
!! AAGAAGGTTGGTTAATTTAT+AGG + chr3_2:66914890-66914909 None:intergenic 25.0%
!! TGAATTGTATAATTTGAGGT+GGG + chr3_2:66914917-66914936 None:intergenic 25.0%
! ATGAATTGTATAATTTGAGG+TGG + chr3_2:66914918-66914937 None:intergenic 25.0%
!! AAAGGATAGTTGAATTTGTT+AGG + chr3_2:66914958-66914977 None:intergenic 25.0%
! AATGAAGTTGAGAATGTTAA+AGG + chr3_2:66914976-66914995 None:intergenic 25.0%
!! TATTTAGAGTCAAAATATGG+TGG - chr3_2:66915458-66915477 Msa0419010:intron 25.0%
!!! CTTTGATTTTTGAATGCTTT+AGG - chr3_2:66915801-66915820 Msa0419010:CDS 25.0%
! CACAATGTTTATTAGAGTTT+AGG - chr3_2:66915951-66915970 Msa0419010:intron 25.0%
! TTTCTGTCATCTTGAAAATA+AGG - chr3_2:66916035-66916054 Msa0419010:CDS 25.0%
!! ATCAAAGTTTTCAAATTTGC+AGG + chr3_2:66916215-66916234 None:intergenic 25.0%
! TGATAGAGTCAATAAAATCA+TGG + chr3_2:66916540-66916559 None:intergenic 25.0%
! CTTAAGTTAATGAGAATCAT+GGG + chr3_2:66916624-66916643 None:intergenic 25.0%
! TCTTAAGTTAATGAGAATCA+TGG + chr3_2:66916625-66916644 None:intergenic 25.0%
! CAATTGAGAGTAATGAAAAA+AGG + chr3_2:66917163-66917182 None:intergenic 25.0%
! AATGAGACAAGAATATTACT+TGG + chr3_2:66917328-66917347 None:intergenic 25.0%
! ATCAAGAATTCTATCAGATT+TGG + chr3_2:66917505-66917524 None:intergenic 25.0%
!! ACAATTAAAAAGGTTTTTGC+GGG + chr3_2:66917540-66917559 None:intergenic 25.0%
!!! ATTTTAAAATCATGATTGCC+AGG + chr3_2:66917616-66917635 None:intergenic 25.0%
! TGTAACTATTTGTCTCTAAA+TGG - chr3_2:66917752-66917771 Msa0419010:intron 25.0%
! ATGAAAATTGATCAGAAAAG+TGG + chr3_2:66917778-66917797 None:intergenic 25.0%
! CAGGTTTGAATGTTAAATTT+AGG - chr3_2:66918045-66918064 Msa0419010:CDS 25.0%
! ATAAGCTGAAAACAACTTAT+AGG + chr3_2:66918137-66918156 None:intergenic 25.0%
!!! CTTATTTTCTTAAGCTTTTC+AGG - chr3_2:66918152-66918171 Msa0419010:CDS 25.0%
! CATATGTATAAACAGGTATT+TGG - chr3_2:66918497-66918516 Msa0419010:intron 25.0%
!! GAACAAATTCTTTACCTTTT+TGG + chr3_2:66918901-66918920 None:intergenic 25.0%
! GAATTGTATAATTTGAGGTG+GGG + chr3_2:66914916-66914935 None:intergenic 30.0%
GTCTACAAACATGACTATTT+CGG - chr3_2:66915041-66915060 Msa0419010:CDS 30.0%
!! GTGAAACAACAATGTTTTGA+GGG + chr3_2:66915128-66915147 None:intergenic 30.0%
TCCTTTCTTATAGCAGATAA+CGG - chr3_2:66915247-66915266 Msa0419010:intron 30.0%
ATTTACAAATACTGCCTCAT+GGG + chr3_2:66915853-66915872 None:intergenic 30.0%
AATTTACAAATACTGCCTCA+TGG + chr3_2:66915854-66915873 None:intergenic 30.0%
AGGCAGTATTTGTAAATTCA+GGG - chr3_2:66915856-66915875 Msa0419010:CDS 30.0%
! GAATCTTTGATTAGCTCAAA+TGG + chr3_2:66915888-66915907 None:intergenic 30.0%
TAAACATTGTGTAGAGAGTA+TGG + chr3_2:66915942-66915961 None:intergenic 30.0%
TTCCTAATGACATAGGATAT+TGG - chr3_2:66915996-66916015 Msa0419010:CDS 30.0%
!! TACATCTTGATTTGTTTGGA+TGG - chr3_2:66916067-66916086 Msa0419010:CDS 30.0%
TACACTAAAGTAAATCCACA+AGG - chr3_2:66916108-66916127 Msa0419010:CDS 30.0%
AAATCCACAAGGAATAAAAG+AGG - chr3_2:66916119-66916138 Msa0419010:intron 30.0%
AATCCACAAGGAATAAAAGA+GGG - chr3_2:66916120-66916139 Msa0419010:intron 30.0%
AAATTAAACAGTCTCTCAAG+TGG - chr3_2:66916259-66916278 Msa0419010:CDS 30.0%
TCATCAACGATGATAAACTT+TGG + chr3_2:66916295-66916314 None:intergenic 30.0%
! AAGTTTATCATCGTTGATGA+TGG - chr3_2:66916295-66916314 Msa0419010:intron 30.0%
ATTGAAATGAGAGACTTACT+GGG + chr3_2:66916377-66916396 None:intergenic 30.0%
AATTGAAATGAGAGACTTAC+TGG + chr3_2:66916378-66916397 None:intergenic 30.0%
AATATGTTAGGTTTGCAACA+AGG - chr3_2:66916449-66916468 Msa0419010:CDS 30.0%
! AATTTGAAGTTCAGAAGTGA+TGG - chr3_2:66916490-66916509 Msa0419010:CDS 30.0%
ATAGGCTTCTTATTGAGATA+AGG + chr3_2:66916590-66916609 None:intergenic 30.0%
! TTTTCATTGCGTTTGAAGAT+GGG + chr3_2:66916728-66916747 None:intergenic 30.0%
! TTTTTCATTGCGTTTGAAGA+TGG + chr3_2:66916729-66916748 None:intergenic 30.0%
TGAATTGGATATACAAGCTT+CGG + chr3_2:66916759-66916778 None:intergenic 30.0%
TTGATAGAAACATTAGGTTC+AGG - chr3_2:66916942-66916961 Msa0419010:CDS 30.0%
TGATAGAAACATTAGGTTCA+GGG - chr3_2:66916943-66916962 Msa0419010:CDS 30.0%
ACAACTCTGATTCAATTTAC+AGG - chr3_2:66917066-66917085 Msa0419010:intron 30.0%
AAGGATGATTCATCAGAAAA+AGG + chr3_2:66917144-66917163 None:intergenic 30.0%
! ACATGTAAGGTTTGAAATGT+TGG + chr3_2:66917242-66917261 None:intergenic 30.0%
! CAATTAAAAAGGTTTTTGCG+GGG + chr3_2:66917539-66917558 None:intergenic 30.0%
TTTACAGTCTGCTGAAAATT+TGG - chr3_2:66917829-66917848 Msa0419010:CDS 30.0%
! TACAAACTGTACAATTTTGC+AGG - chr3_2:66918298-66918317 Msa0419010:intron 30.0%
! ACTTCTAATTTTCCTCTACT+AGG + chr3_2:66918340-66918359 None:intergenic 30.0%
!! AGGAAAATTAGAAGTATCCT+TGG - chr3_2:66918345-66918364 Msa0419010:intron 30.0%
TATATACAGTATCTCCAATC+AGG - chr3_2:66918386-66918405 Msa0419010:intron 30.0%
ATATACAGTATCTCCAATCA+GGG - chr3_2:66918387-66918406 Msa0419010:intron 30.0%
TGCACAATAGTAAACATCAA+AGG - chr3_2:66918614-66918633 Msa0419010:CDS 30.0%
TTACTGACCATTAAACTTGA+TGG - chr3_2:66918737-66918756 Msa0419010:CDS 30.0%
GACATAGAATTTGTATTCTG+AGG - chr3_2:66918776-66918795 Msa0419010:CDS 30.0%
! TTCTTTTGTATGCTTACGAT+AGG + chr3_2:66918866-66918885 None:intergenic 30.0%
GATGGTTGTATTGTATCGTA+TGG + chr3_2:66914749-66914768 None:intergenic 35.0%
! CTCGAAATTTTGTTGGAGTA+TGG + chr3_2:66914794-66914813 None:intergenic 35.0%
!! GCTTTGACTCGAAATTTTGT+TGG + chr3_2:66914801-66914820 None:intergenic 35.0%
! AGGTTGGTTAATTTATAGGG+AGG + chr3_2:66914886-66914905 None:intergenic 35.0%
! GGTGAAACAACAATGTTTTG+AGG + chr3_2:66915129-66915148 None:intergenic 35.0%
TCTGCTATAAGAAAGGAGAA+GGG + chr3_2:66915244-66915263 None:intergenic 35.0%
ATCTGCTATAAGAAAGGAGA+AGG + chr3_2:66915245-66915264 None:intergenic 35.0%
TCCGTTATCTGCTATAAGAA+AGG + chr3_2:66915251-66915270 None:intergenic 35.0%
AAAAATATGCAGGGGGATAT+AGG - chr3_2:66915425-66915444 Msa0419010:intron 35.0%
AGAAGCAATTGAGTTTCCAT+TGG + chr3_2:66915520-66915539 None:intergenic 35.0%
GGATTGTGAAGTTTGAACAT+AGG + chr3_2:66915832-66915851 None:intergenic 35.0%
GAGGCAGTATTTGTAAATTC+AGG - chr3_2:66915855-66915874 Msa0419010:CDS 35.0%
GGCAGTATTTGTAAATTCAG+GGG - chr3_2:66915857-66915876 Msa0419010:CDS 35.0%
CTCCAATATCCTATGTCATT+AGG + chr3_2:66916001-66916020 None:intergenic 35.0%
AGGATATTGGAGAAACACAA+AGG - chr3_2:66916009-66916028 Msa0419010:CDS 35.0%
CCAAACAAATCAAGATGTAC+AGG + chr3_2:66916066-66916085 None:intergenic 35.0%
!! CCTGTACATCTTGATTTGTT+TGG - chr3_2:66916063-66916082 Msa0419010:CDS 35.0%
!! GAATAAAAGAGGGCATTCAA+AGG - chr3_2:66916130-66916149 Msa0419010:intron 35.0%
AATTTGCAGGCTTATCACAT+AGG + chr3_2:66916202-66916221 None:intergenic 35.0%
!! TTATCATCGTTGATGATGGA+TGG - chr3_2:66916299-66916318 Msa0419010:intron 35.0%
TACTGGGTTCCTTCAATTAT+CGG + chr3_2:66916361-66916380 None:intergenic 35.0%
GCATGAGAACTAAGAAATGA+AGG + chr3_2:66916416-66916435 None:intergenic 35.0%
AACAAGGCTGATAGACATTA+AGG - chr3_2:66916465-66916484 Msa0419010:CDS 35.0%
AGTTAATGAGAATCATGGGA+TGG + chr3_2:66916620-66916639 None:intergenic 35.0%
TGAACAAGCATACTCATTGT+CGG + chr3_2:66916649-66916668 None:intergenic 35.0%
CATTAGAGACATCAATAGCA+AGG - chr3_2:66917006-66917025 Msa0419010:CDS 35.0%
! AGCTTTTAACAGTCTTCTTC+TGG - chr3_2:66917271-66917290 Msa0419010:intron 35.0%
! GCTTTTAACAGTCTTCTTCT+GGG - chr3_2:66917272-66917291 Msa0419010:intron 35.0%
! TCTGAAAATGTTGATGAGTC+TGG - chr3_2:66917367-66917386 Msa0419010:CDS 35.0%
AAGAAGCTAGTACTACCTAA+TGG - chr3_2:66917640-66917659 Msa0419010:CDS 35.0%
TGAAACAAACAATCTCGAGT+AGG + chr3_2:66917697-66917716 None:intergenic 35.0%
TACTCGAGATTGTTTGTTTC+AGG - chr3_2:66917696-66917715 Msa0419010:CDS 35.0%
TTTGTTTCAGGATCCAGTAA+TGG - chr3_2:66917708-66917727 Msa0419010:intron 35.0%
!! ATCCAGTAATGGATGGTAAA+AGG - chr3_2:66917719-66917738 Msa0419010:intron 35.0%
! TACCTTTTACCATCCATTAC+TGG + chr3_2:66917724-66917743 None:intergenic 35.0%
! TGGTCTAACTTTTCCTGAAA+TGG + chr3_2:66917952-66917971 None:intergenic 35.0%
TGAAGAAACTCAACATCAAG+TGG + chr3_2:66917972-66917991 None:intergenic 35.0%
TGATGTTGAGTTTCTTCAAG+AGG - chr3_2:66917974-66917993 Msa0419010:intron 35.0%
ATACTATATGCCTTCAATGC+AGG - chr3_2:66918026-66918045 Msa0419010:CDS 35.0%
AACATTCAAACCTGCATTGA+AGG + chr3_2:66918039-66918058 None:intergenic 35.0%
! TGTTAAATTTAGGGCATGTC+TGG - chr3_2:66918055-66918074 Msa0419010:CDS 35.0%
! CTGGAGATTGCATACTTTTA+AGG - chr3_2:66918074-66918093 Msa0419010:CDS 35.0%
TGTACAGTTTGTAAGCATGT+TGG + chr3_2:66918291-66918310 None:intergenic 35.0%
TACATGTCAAGCAATCCAAT+TGG + chr3_2:66918542-66918561 None:intergenic 35.0%
TTGCTTGACATGTACAATTC+AGG - chr3_2:66918548-66918567 Msa0419010:CDS 35.0%
TAGAAGAATTGTCCTGCATA+AGG - chr3_2:66918579-66918598 Msa0419010:CDS 35.0%
AGAAGAATTGTCCTGCATAA+GGG - chr3_2:66918580-66918599 Msa0419010:CDS 35.0%
ATAGTAAACATCAAAGGCAG+AGG - chr3_2:66918620-66918639 Msa0419010:CDS 35.0%
!! TTTTCCTACAACTCTGAAGA+TGG - chr3_2:66918713-66918732 Msa0419010:CDS 35.0%
TAATCCATCTTCAGAGTTGT+AGG + chr3_2:66918720-66918739 None:intergenic 35.0%
!! ACCATTAAACTTGATGGTGA+AGG - chr3_2:66918743-66918762 Msa0419010:CDS 35.0%
ATGACACGTTCTCATTCTAA+AGG - chr3_2:66918973-66918992 Msa0419010:five_prime_UTR 35.0%
TTGTATCGTATGGAGGAAAC+AGG + chr3_2:66914739-66914758 None:intergenic 40.0%
GGTTGTATTGTATCGTATGG+AGG + chr3_2:66914746-66914765 None:intergenic 40.0%
TTGTTGGAGTATGGAAGTAG+TGG + chr3_2:66914785-66914804 None:intergenic 40.0%
! TTGTATAATTTGAGGTGGGG+TGG + chr3_2:66914913-66914932 None:intergenic 40.0%
TTCGGTTGTACCTAAAGTGA+AGG - chr3_2:66915059-66915078 Msa0419010:CDS 40.0%
TTGTTTCACCTGTTTCAGCT+GGG - chr3_2:66915139-66915158 Msa0419010:CDS 40.0%
TAGCTGATATAGCGAGCTAT+TGG - chr3_2:66915276-66915295 Msa0419010:intron 40.0%
! AACTTATCGGCTATCAGCTA+CGG + chr3_2:66915304-66915323 None:intergenic 40.0%
GGAAACTCAATTGCTTCTAG+TGG - chr3_2:66915522-66915541 Msa0419010:intron 40.0%
AACAGGCAAGAAGAGAATGT+AGG + chr3_2:66915623-66915642 None:intergenic 40.0%
! CATTCTCTTCTTGCCTGTTT+TGG - chr3_2:66915624-66915643 Msa0419010:intron 40.0%
AACCACTTTCAACGCAGAAT+TGG + chr3_2:66915696-66915715 None:intergenic 40.0%
TCAAACTTCACAATCCCATG+AGG - chr3_2:66915836-66915855 Msa0419010:CDS 40.0%
ATTTGTTTGGATGGTGCACT+TGG - chr3_2:66916076-66916095 Msa0419010:CDS 40.0%
TTTGTTTGGATGGTGCACTT+GGG - chr3_2:66916077-66916096 Msa0419010:CDS 40.0%
! ATGCCCTCTTTTATTCCTTG+TGG + chr3_2:66916126-66916145 None:intergenic 40.0%
TTAAACAGTCTCTCAAGTGG+AGG - chr3_2:66916262-66916281 Msa0419010:CDS 40.0%
GAGATTGTTGCAAGAACTGT+TGG + chr3_2:66916518-66916537 None:intergenic 40.0%
TCATGGGATGGAAGTTCAAT+AGG + chr3_2:66916608-66916627 None:intergenic 40.0%
GCATGCTTTAGCTGGTTATT+GGG - chr3_2:66916692-66916711 Msa0419010:CDS 40.0%
CATGCTTTAGCTGGTTATTG+GGG - chr3_2:66916693-66916712 Msa0419010:CDS 40.0%
GTATATCCAATTCAGTCAGC+TGG - chr3_2:66916765-66916784 Msa0419010:CDS 40.0%
!! TATATCTCTAAGGTTCCCTG+TGG + chr3_2:66916793-66916812 None:intergenic 40.0%
GAACCTTAGAGATATAGCCA+TGG - chr3_2:66916797-66916816 Msa0419010:CDS 40.0%
TGTCCATGGCTATATCTCTA+AGG + chr3_2:66916803-66916822 None:intergenic 40.0%
! ATATTTTTCCAGGCTGTCCA+TGG + chr3_2:66916817-66916836 None:intergenic 40.0%
ATGGACAGCCTGGAAAAATA+TGG - chr3_2:66916816-66916835 Msa0419010:CDS 40.0%
AGCCTGGAAAAATATGGAGT+GGG - chr3_2:66916822-66916841 Msa0419010:CDS 40.0%
! TTCCCACTCCATATTTTTCC+AGG + chr3_2:66916827-66916846 None:intergenic 40.0%
TGTGAGACATGCAACAAATG+AGG + chr3_2:66917049-66917068 None:intergenic 40.0%
ATCTGAGGATTTCATGCCAA+GGG - chr3_2:66917214-66917233 Msa0419010:CDS 40.0%
!! GTTTGAAATGTTGGTTCCCT+TGG + chr3_2:66917233-66917252 None:intergenic 40.0%
TCAAACCTTACATGTTGCGT+CGG - chr3_2:66917247-66917266 Msa0419010:CDS 40.0%
AGAGATATTTGTGCCAGACT+GGG - chr3_2:66917295-66917314 Msa0419010:intron 40.0%
GTGGTTGTGCAGTATATGTT+AGG - chr3_2:66917472-66917491 Msa0419010:intron 40.0%
ATGCATTACAGTGATAAGCC+TGG - chr3_2:66917595-66917614 Msa0419010:CDS 40.0%
ACAAACAATCTCGAGTAGGA+CGG + chr3_2:66917693-66917712 None:intergenic 40.0%
! TTTCAGGATCCAGTAATGGA+TGG - chr3_2:66917712-66917731 Msa0419010:intron 40.0%
TGGAACTTGAATAAGCTGAC+TGG - chr3_2:66917849-66917868 Msa0419010:CDS 40.0%
GGAACTTGAATAAGCTGACT+GGG - chr3_2:66917850-66917869 Msa0419010:CDS 40.0%
GAACTTGAATAAGCTGACTG+GGG - chr3_2:66917851-66917870 Msa0419010:CDS 40.0%
ATAGGCGTCTTTAATTGCCA+AGG - chr3_2:66917876-66917895 Msa0419010:CDS 40.0%
CCTGAAATGGTTAAGTGTGT+CGG + chr3_2:66917939-66917958 None:intergenic 40.0%
AAGAGGTTGCTGGTGAAAAT+TGG - chr3_2:66917991-66918010 Msa0419010:intron 40.0%
GTTGCTGGTGAAAATTGGAA+TGG - chr3_2:66917996-66918015 Msa0419010:intron 40.0%
! AGGCTGTTTGAGATAGCTTA+TGG - chr3_2:66918094-66918113 Msa0419010:CDS 40.0%
TTCACATTGAAGAGTCTCCA+AGG + chr3_2:66918365-66918384 None:intergenic 40.0%
CATATGCAATTTGCGCCAAT+TGG - chr3_2:66918524-66918543 Msa0419010:CDS 40.0%
CTTGACATGTACAATTCAGG+AGG - chr3_2:66918551-66918570 Msa0419010:CDS 40.0%
! GCAACTTTTCGGTCTAACAT+TGG + chr3_2:66918669-66918688 None:intergenic 40.0%
TGTTAGACCGAAAAGTTGCT+TGG - chr3_2:66918670-66918689 Msa0419010:CDS 40.0%
! ATGTCCACCAAGCAACTTTT+CGG + chr3_2:66918680-66918699 None:intergenic 40.0%
GCCTTCACCATCAAGTTTAA+TGG + chr3_2:66918747-66918766 None:intergenic 40.0%
! ACAAGAATCGACTTTCGCTT+GGG + chr3_2:66918816-66918835 None:intergenic 40.0%
! AACAAGAATCGACTTTCGCT+TGG + chr3_2:66918817-66918836 None:intergenic 40.0%
GTATGCTTACGATAGGAGTT+AGG + chr3_2:66918859-66918878 None:intergenic 40.0%
AGTGGACAAACAACTGGTGA+TGG + chr3_2:66914767-66914786 None:intergenic 45.0%
!! GGAAGTAGTGGACAAACAAC+TGG + chr3_2:66914773-66914792 None:intergenic 45.0%
GAGGGACATTTGTGAGAATC+AGG + chr3_2:66915110-66915129 None:intergenic 45.0%
! GTTGTTTCACCTGTTTCAGC+TGG - chr3_2:66915138-66915157 Msa0419010:CDS 45.0%
!!! TCAGCTGGGTCTGCTTTTTT+AGG - chr3_2:66915153-66915172 Msa0419010:CDS 45.0%
! ACATGACGGGAACTAGGAAT+AGG + chr3_2:66915189-66915208 None:intergenic 45.0%
TTCCATTGGAACATCGCTTG+CGG + chr3_2:66915506-66915525 None:intergenic 45.0%
!! CTCTTCTTGCCTGTTTTGGA+TGG - chr3_2:66915628-66915647 Msa0419010:intron 45.0%
GAATTGGAGCTCGTTTAACG+CGG + chr3_2:66915680-66915699 None:intergenic 45.0%
CTCCAATTCTGCGTTGAAAG+TGG - chr3_2:66915691-66915710 Msa0419010:intron 45.0%
GAAGGCGAACCGATAATTGA+AGG - chr3_2:66916349-66916368 Msa0419010:intron 45.0%
TCCGCAGATACGTTTACATG+TGG - chr3_2:66916670-66916689 Msa0419010:CDS 45.0%
GCCACATGTAAACGTATCTG+CGG + chr3_2:66916674-66916693 None:intergenic 45.0%
TACATGTGGCATGCTTTAGC+TGG - chr3_2:66916684-66916703 Msa0419010:CDS 45.0%
GGCATGCTTTAGCTGGTTAT+TGG - chr3_2:66916691-66916710 Msa0419010:CDS 45.0%
CAGCCTGGAAAAATATGGAG+TGG - chr3_2:66916821-66916840 Msa0419010:CDS 45.0%
CACAGTTATCTTGCTAGCTG+TGG - chr3_2:66916888-66916907 Msa0419010:CDS 45.0%
GAAACATTAGGTTCAGGGTG+CGG - chr3_2:66916948-66916967 Msa0419010:CDS 45.0%
CATCTGAGGATTTCATGCCA+AGG - chr3_2:66917213-66917232 Msa0419010:CDS 45.0%
GAGAGATATTTGTGCCAGAC+TGG - chr3_2:66917294-66917313 Msa0419010:intron 45.0%
TTTGTAGAGCAAGCACGAGA+CGG - chr3_2:66917419-66917438 Msa0419010:CDS 45.0%
GCTCTCAAGACTGATCCATT+AGG + chr3_2:66917658-66917677 None:intergenic 45.0%
GTCTTGAGAGCAAGATATGC+TGG - chr3_2:66917667-66917686 Msa0419010:CDS 45.0%
AATAAGCTGACTGGGGTCAT+AGG - chr3_2:66917858-66917877 Msa0419010:CDS 45.0%
GTCTTTAATTGCCAAGGAGC+AGG - chr3_2:66917882-66917901 Msa0419010:CDS 45.0%
AAGCTGGCCAATGAAACCAT+CGG - chr3_2:66917905-66917924 Msa0419010:intron 45.0%
GTGGTTTCCGATGGTTTCAT+TGG + chr3_2:66917915-66917934 None:intergenic 45.0%
! AATGGTTAAGTGTGTCGGTG+TGG + chr3_2:66917934-66917953 None:intergenic 45.0%
CCGACACACTTAACCATTTC+AGG - chr3_2:66917936-66917955 Msa0419010:intron 45.0%
GAGTTTCTTCAAGAGGTTGC+TGG - chr3_2:66917981-66918000 Msa0419010:intron 45.0%
! TTTTCCTCTACTAGGCAGCT+TGG + chr3_2:66918332-66918351 None:intergenic 45.0%
ACAGTATCTCCAATCAGGGT+TGG - chr3_2:66918391-66918410 Msa0419010:intron 45.0%
GTCATAACACCAACCCTGAT+TGG + chr3_2:66918403-66918422 None:intergenic 45.0%
ATTTGCAGCATCCCTTATGC+AGG + chr3_2:66918594-66918613 None:intergenic 45.0%
AACATCAAAGGCAGAGGATG+TGG - chr3_2:66918626-66918645 Msa0419010:CDS 45.0%
CATTGGAGTACGCTCCAAAT+CGG + chr3_2:66918652-66918671 None:intergenic 45.0%
TAGACCGAAAAGTTGCTTGG+TGG - chr3_2:66918673-66918692 Msa0419010:CDS 45.0%
!! TTGATGGTGAAGGCAACTCA+AGG - chr3_2:66918753-66918772 Msa0419010:CDS 45.0%
! TGATGGTGAAGGCAACTCAA+GGG - chr3_2:66918754-66918773 Msa0419010:CDS 45.0%
! ATTTGAGGTGGGGTGGAAGA+AGG + chr3_2:66914906-66914925 None:intergenic 50.0%
AGGCACTCGTCCTTCACTTT+AGG + chr3_2:66915072-66915091 None:intergenic 50.0%
AGTGAAGGACGAGTGCCTTA+TGG - chr3_2:66915074-66915093 Msa0419010:CDS 50.0%
AAAGCAGACCCAGCTGAAAC+AGG + chr3_2:66915150-66915169 None:intergenic 50.0%
! GTGAAGACATGACGGGAACT+AGG + chr3_2:66915195-66915214 None:intergenic 50.0%
! TGGTGGATGATACCACGTGT+TGG - chr3_2:66915475-66915494 Msa0419010:intron 50.0%
GGTGGATGATACCACGTGTT+GGG - chr3_2:66915476-66915495 Msa0419010:intron 50.0%
ATCCGCAAGCGATGTTCCAA+TGG - chr3_2:66915501-66915520 Msa0419010:intron 50.0%
CGAAAGGCTCCATCCAAAAC+AGG + chr3_2:66915640-66915659 None:intergenic 50.0%
TCCTTGCAAAGTTGCGCGAA+AGG + chr3_2:66915656-66915675 None:intergenic 50.0%
GCTTTAGCTGGTTATTGGGG+AGG - chr3_2:66916696-66916715 Msa0419010:CDS 50.0%
GTGGAACCAGCTGACTGAAT+TGG + chr3_2:66916774-66916793 None:intergenic 50.0%
! ATTCAGTCAGCTGGTTCCAC+AGG - chr3_2:66916774-66916793 Msa0419010:CDS 50.0%
! TTCAGTCAGCTGGTTCCACA+GGG - chr3_2:66916775-66916794 Msa0419010:CDS 50.0%
AGATATAGCCATGGACAGCC+TGG - chr3_2:66916806-66916825 Msa0419010:CDS 50.0%
!! TGCAGTAGCAAGAGCATCTG+AGG - chr3_2:66917199-66917218 Msa0419010:CDS 50.0%
AGCTACCGACGCAACATGTA+AGG + chr3_2:66917255-66917274 None:intergenic 50.0%
ACTTGGAACATGTCCCAGTC+TGG + chr3_2:66917311-66917330 None:intergenic 50.0%
CTATTGCTCTTGCTGCTGCA+TGG + chr3_2:66917452-66917471 None:intergenic 50.0%
CATGCAGCAGCAAGAGCAAT+AGG - chr3_2:66917450-66917469 Msa0419010:intron 50.0%
CTTTCCAAGCTGCCTAGTAG+AGG - chr3_2:66918325-66918344 Msa0419010:intron 50.0%
! AAGTTGCTTGGTGGACATGC+AGG - chr3_2:66918682-66918701 Msa0419010:CDS 50.0%
AGGACGAGTGCCTTATGGTG+AGG - chr3_2:66915079-66915098 Msa0419010:CDS 55.0%
GGACGAGTGCCTTATGGTGA+GGG - chr3_2:66915080-66915099 Msa0419010:CDS 55.0%
GACGAGTGCCTTATGGTGAG+GGG - chr3_2:66915081-66915100 Msa0419010:CDS 55.0%
! TCAGGTTGCCCCTCACCATA+AGG + chr3_2:66915092-66915111 None:intergenic 55.0%
TCCCGTCATGTCTTCACCCT+CGG - chr3_2:66915198-66915217 Msa0419010:CDS 55.0%
TGCCGAGGGTGAAGACATGA+CGG + chr3_2:66915203-66915222 None:intergenic 55.0%
GGAGAAGGGATGAGACTCAC+CGG + chr3_2:66915230-66915249 None:intergenic 55.0%
CTTGCGGATTTCCCAACACG+TGG + chr3_2:66915490-66915509 None:intergenic 55.0%
GCCTTTCGCGCAACTTTGCA+AGG - chr3_2:66915652-66915671 Msa0419010:intron 55.0%
ACATTAGGTTCAGGGTGCGG+TGG - chr3_2:66916951-66916970 Msa0419010:CDS 55.0%
GCAGCAGCAAGAGCAATAGG+TGG - chr3_2:66917453-66917472 Msa0419010:intron 55.0%
ATTGCCAAGGAGCAGGAAGC+TGG - chr3_2:66917889-66917908 Msa0419010:CDS 55.0%
! TGTGTCGGTGTGGTTTCCGA+TGG + chr3_2:66917924-66917943 None:intergenic 55.0%
! CTTGGTGGACATGCAGGAGA+AGG - chr3_2:66918688-66918707 Msa0419010:CDS 55.0%
GAGGTGGGGTGGAAGAAGGT+TGG + chr3_2:66914902-66914921 None:intergenic 60.0%
GCCGAGGGTGAAGACATGAC+GGG + chr3_2:66915202-66915221 None:intergenic 60.0%
TCTTCACCCTCGGCACTCTC+CGG - chr3_2:66915208-66915227 Msa0419010:intron 60.0%
! CTTGCTAGCTGTGGCGTCGA+TGG - chr3_2:66916897-66916916 Msa0419010:CDS 60.0%
TTGGCCAGCTTCCTGCTCCT+TGG + chr3_2:66917896-66917915 None:intergenic 60.0%
GGCAGAGGATGTGGCCGATT+TGG - chr3_2:66918635-66918654 Msa0419010:CDS 60.0%
!! GACTCACCGGAGAGTGCCGA+GGG + chr3_2:66915217-66915236 None:intergenic 65.0%
!! AGACTCACCGGAGAGTGCCG+AGG + chr3_2:66915218-66915237 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 66914698 66919036 66914698 ID=Msa0419010;Name=Msa0419010
chr3_2 mRNA 66914698 66919036 66914698 ID=Msa0419010-mRNA-1;Parent=Msa0419010;Name=Msa0419010-mRNA-1;_AED=0.10;_eAED=0.10;_QI=134|0.92|0.92|1|0.84|0.78|14|240|798
chr3_2 exon 66914698 66915222 66914698 ID=Msa0419010-mRNA-1:exon:15510;Parent=Msa0419010-mRNA-1
chr3_2 exon 66915326 66915414 66915326 ID=Msa0419010-mRNA-1:exon:15509;Parent=Msa0419010-mRNA-1
chr3_2 exon 66915732 66915898 66915732 ID=Msa0419010-mRNA-1:exon:15508;Parent=Msa0419010-mRNA-1
chr3_2 exon 66915994 66916128 66915994 ID=Msa0419010-mRNA-1:exon:15507;Parent=Msa0419010-mRNA-1
chr3_2 exon 66916241 66916308 66916241 ID=Msa0419010-mRNA-1:exon:15506;Parent=Msa0419010-mRNA-1
chr3_2 exon 66916406 66916547 66916406 ID=Msa0419010-mRNA-1:exon:15505;Parent=Msa0419010-mRNA-1
chr3_2 exon 66916647 66917057 66916647 ID=Msa0419010-mRNA-1:exon:15504;Parent=Msa0419010-mRNA-1
chr3_2 exon 66917156 66917275 66917156 ID=Msa0419010-mRNA-1:exon:15503;Parent=Msa0419010-mRNA-1
chr3_2 exon 66917357 66917464 66917357 ID=Msa0419010-mRNA-1:exon:15502;Parent=Msa0419010-mRNA-1
chr3_2 exon 66917583 66917723 66917583 ID=Msa0419010-mRNA-1:exon:15501;Parent=Msa0419010-mRNA-1
chr3_2 exon 66917821 66917911 66917821 ID=Msa0419010-mRNA-1:exon:15500;Parent=Msa0419010-mRNA-1
chr3_2 exon 66918022 66918296 66918022 ID=Msa0419010-mRNA-1:exon:15499;Parent=Msa0419010-mRNA-1
chr3_2 exon 66918505 66918920 66918505 ID=Msa0419010-mRNA-1:exon:15498;Parent=Msa0419010-mRNA-1
chr3_2 exon 66918954 66919036 66918954 ID=Msa0419010-mRNA-1:exon:15497;Parent=Msa0419010-mRNA-1
chr3_2 five_prime_UTR 66918954 66919036 66918954 ID=Msa0419010-mRNA-1:five_prime_utr;Parent=Msa0419010-mRNA-1
chr3_2 five_prime_UTR 66918870 66918920 66918870 ID=Msa0419010-mRNA-1:five_prime_utr;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66918505 66918869 66918505 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66918022 66918296 66918022 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66917821 66917911 66917821 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66917583 66917723 66917583 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66917357 66917464 66917357 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66917156 66917275 66917156 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66916647 66917057 66916647 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66916406 66916547 66916406 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66916241 66916308 66916241 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66915994 66916128 66915994 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66915732 66915898 66915732 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66915326 66915414 66915326 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 CDS 66914938 66915222 66914938 ID=Msa0419010-mRNA-1:cds;Parent=Msa0419010-mRNA-1
chr3_2 three_prime_UTR 66914698 66914937 66914698 ID=Msa0419010-mRNA-1:three_prime_utr;Parent=Msa0419010-mRNA-1
Gene Sequence

>Msa0419010

ATGAATAAAATATTGTCACCTCCCTATAAATTAACCAACCTTCTTCCACCCCACCTCAAATTATACAATTCATCATCATTCATCAACTTACCTAACAAATTCAACTATCCTTTAACATTCTCAACTTCATTTTTGTGTTCTTATTCTGTTACTTTTCTCAACTTTGTTCATTCTTTGTCTACAAACATGACTATTTCGGTTGTACCTAAAGTGAAGGACGAGTGCCTTATGGTGAGGGGCAACCTGATTCTCACAAATGTCCCTCAAAACATTGTTGTTTCACCTGTTTCAGCTGGGTCTGCTTTTTTAGGTGCAACTTCTCCTATTCCTAGTTCCCGTCATGTCTTCACCCTCGGCACTCTCCGGGGATATAGGTTGTTATCTTTATTTAGAGTCAAAATATGGTGGATGATACCACGTGTTGGGAAATCCGCAAGCGATGTTCCAATGGAAACTCAATTGCTTCTAGTGGAAGCAAGAGAAGAGTCTGCTCTTAAGACAGATTTTTCTTCTGATTCTGAAGAGACAGAAGAAGAGATCAATACTTCCTACATTCTCTTCTTGCCTGTTTTGGATGGAGCCTTTCGCGCAACTTTGCAAGGAACCGCGTTAAACGAGCTCCAATTCTGCGTTGAAAGTGGAGATGCCTATGTTCAAACTTCACAATCCCATGAGGCAGTATTTGTAAATTCAGGGGACAATCCATTTGAGCTAATCAAAGATTCTATCAAGATATTGGAGAAACACAAAGGAACTTTCTGTCATCTTGAAAATAAGGAGACTCCTGTACATCTTGATTTGTTTGGATGGTGCACTTGGGATGCATTTTACACTAAAGTAAATCCACAAGGAATAAAAGAGGGCATTCAAAGTCTCTCAAGTGGAGGTTTTACACCAAAGTTTATCATCGTTGATGATGGATGGCAAGAGACGTACAATGAATTTTTCAAAGAAGGCGAACCGATAATTGAAGGAACCCAGTTTGCAACAAGGCTGATAGACATTAAGGAAAATTTGAAGTTCAGAAGTGATGGCTCCAACAGTTCTTGCAACAATCTCCATGATTTTATTGACTCTATCAAACAGAATTTGAGTGTAAAATACGTTTACATGTGGCATGCTTTAGCTGGTTATTGGGGAGGAGTACTCCCATCTTCAAACGCAATGAAAAAATATAATCCGAAGCTTGTATATCCAATTCAGTCAGCTGGTTCCACAGGGAACCTTAGAGATATAGCCATGGACAGCCTGGAAAAATATGGAGTGGGAATGATAGATCCATCAAAATTTTATGACTTTTACAATGACTATCACAGTTATCTTGCTAGCTGTGGCGTCGATGGAGTCAAAGTAGATGTCCAAAATTTGATAGAAACATTAGGTTCAGGGTGCGGTGGACGTGTTTCATTAACAAAACGACATCAAGAAGCATTAGAGACATCAATAGCAAGGAACTTTGAGCACAATAACCTCATTTGTTGCATGTCTCACAACTCTGATTCAATTTACAGTTCAAAGAAGAGTGCAGTAGCAAGAGCATCTGAGGATTTCATGCCAAGGGAACCAACATTTCAAACCTTACATGTTGCGTCGGTAGCTTTTAACAGTCTTCTTCTGGGAGAGATATTTGTGCCAGACTGGGACATGTTCCAAAGCAAGCACGAGACGGCTGAGTTCCATGCAGCAGCAAGAGCAATAGGTGGTTGTGCAGTATATGTTAGTGATAAGCCTGGCAATCATGATTTTAAAATCTTGAAGAAGCTAGTACTACCTAATGGATCAGTCTTGAGAGCAAGATATGCTGGCCGTCCTACTCGAGATTGTTTGTTTCAGGATCCAGTAATGGATGGTAAAAGTCTGCTGAAAATTTGGAACTTGAATAAGCTGACTGGGGTCATAGGCGTCTTTAATTGCCAAGGAGCAGGAAGCTGGCCAATGAAACCATCGGAAACCACACCGACACACTTAACCATTTCAGGAAAAGTTAGACCACTTGATGTTGAGTTTCTTCAAGAGGTTGCTGGCTTGCTTTCCAAGCTGCCTAGTAGAGGAAAATTAGAAGTATCCTTGGAGACTCTTCAATGTGAAGTATATACAGTATCTCCAATCAGGGTATTTGGTCATCATATGCAATTTGCGCCAATTGGATTGCTTGACATGTACAATTCAGGAGGAGCTGTAGAAGAATTGTCCTGCATAAGGGATGCTGCAAATTGCACAATAGTAAACATCAAAGGCAGAGGATGTGGCCGATTTGGAGCGTACTCCAATGTTAGACCGAAAAGTTGCTTGGTGGACATGCAGGAGAAGGAGTTTTCCTACAACTCTGAAGATGGATTACTGACCATTAAACTTGATGGTGAAGGCAACTCAAGGGACATAGAATTTGTATTCTGA

Protein sequence

>Msa0419010

MNKILSPPYKLTNLLPPHLKLYNSSSFINLPNKFNYPLTFSTSFLCSYSVTFLNFVHSLSTNMTISVVPKVKDECLMVRGNLILTNVPQNIVVSPVSAGSAFLGATSPIPSSRHVFTLGTLRGYRLLSLFRVKIWWMIPRVGKSASDVPMETQLLLVEAREESALKTDFSSDSEETEEEINTSYILFLPVLDGAFRATLQGTALNELQFCVESGDAYVQTSQSHEAVFVNSGDNPFELIKDSIKILEKHKGTFCHLENKETPVHLDLFGWCTWDAFYTKVNPQGIKEGIQSLSSGGFTPKFIIVDDGWQETYNEFFKEGEPIIEGTQFATRLIDIKENLKFRSDGSNSSCNNLHDFIDSIKQNLSVKYVYMWHALAGYWGGVLPSSNAMKKYNPKLVYPIQSAGSTGNLRDIAMDSLEKYGVGMIDPSKFYDFYNDYHSYLASCGVDGVKVDVQNLIETLGSGCGGRVSLTKRHQEALETSIARNFEHNNLICCMSHNSDSIYSSKKSAVARASEDFMPREPTFQTLHVASVAFNSLLLGEIFVPDWDMFQSKHETAEFHAAARAIGGCAVYVSDKPGNHDFKILKKLVLPNGSVLRARYAGRPTRDCLFQDPVMDGKSLLKIWNLNKLTGVIGVFNCQGAGSWPMKPSETTPTHLTISGKVRPLDVEFLQEVAGLLSKLPSRGKLEVSLETLQCEVYTVSPIRVFGHHMQFAPIGLLDMYNSGGAVEELSCIRDAANCTIVNIKGRGCGRFGAYSNVRPKSCLVDMQEKEFSYNSEDGLLTIKLDGEGNSRDIEFVF*