Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464850 | XP_013460983.1 | 92.899 | 169 | 11 | 1 | 1 | 168 | 583 | 751 | 3.92e-105 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464850 | sp|Q94A08|RFS2_ARATH | 36.416 | 173 | 86 | 3 | 5 | 155 | 587 | 757 | 6.48e-33 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464850 | A0A072UZM9 | 92.899 | 169 | 11 | 1 | 1 | 168 | 583 | 751 | 1.87e-105 | 327 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046950 | Msa0464850 | 0.805702 | 1.175147e-49 | -8.615850e-47 |
| Msa0233920 | Msa0464850 | 0.833128 | 6.370941e-56 | -8.615850e-47 |
| Msa0419010 | Msa0464850 | 0.870070 | 1.925396e-66 | -8.615850e-47 |
| Msa0464850 | Msa0838650 | 0.806345 | 8.605352e-50 | -8.615850e-47 |
| Msa0464850 | Msa1087890 | 0.828077 | 1.098337e-54 | -8.615850e-47 |
| Msa0464850 | Msa1129420 | 0.812638 | 3.833880e-51 | -8.615850e-47 |
| Msa0464850 | Msa1385970 | 0.831518 | 1.594939e-55 | -8.615850e-47 |
| Msa0464850 | Msa1417110 | 0.829846 | 4.096678e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464850 | MtrunA17_Chr3g0116641 | 92.899 | 169 | 11 | 1 | 1 | 168 | 583 | 751 | 3.61e-109 | 327 |
| Msa0464850 | MtrunA17_Chr1g0173521 | 41.667 | 144 | 82 | 1 | 12 | 155 | 640 | 781 | 2.88e-33 | 124 |
| Msa0464850 | MtrunA17_Chr4g0064311 | 41.497 | 147 | 79 | 3 | 12 | 156 | 678 | 819 | 1.26e-31 | 119 |
| Msa0464850 | MtrunA17_Chr7g0257731 | 34.320 | 169 | 91 | 2 | 5 | 155 | 432 | 598 | 1.60e-27 | 107 |
| Msa0464850 | MtrunA17_Chr5g0447201 | 40.000 | 145 | 83 | 2 | 12 | 155 | 603 | 744 | 2.45e-25 | 101 |
| Msa0464850 | MtrunA17_Chr3g0117141 | 37.405 | 131 | 78 | 3 | 39 | 168 | 659 | 786 | 1.24e-17 | 79.3 |
| Msa0464850 | MtrunA17_Chr4g0058701 | 32.061 | 131 | 85 | 2 | 39 | 168 | 651 | 778 | 2.12e-13 | 67.0 |
| Msa0464850 | MtrunA17_Chr1g0201161 | 32.381 | 105 | 65 | 3 | 51 | 155 | 809 | 907 | 5.50e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464850 | AT3G57520.1 | 36.416 | 173 | 86 | 3 | 5 | 155 | 587 | 757 | 6.58e-34 | 126 |
| Msa0464850 | AT5G20250.4 | 42.857 | 147 | 79 | 2 | 12 | 156 | 685 | 828 | 8.34e-32 | 120 |
| Msa0464850 | AT5G20250.3 | 42.857 | 147 | 79 | 2 | 12 | 156 | 590 | 733 | 8.53e-32 | 120 |
| Msa0464850 | AT5G20250.1 | 42.857 | 147 | 79 | 2 | 12 | 156 | 590 | 733 | 8.53e-32 | 120 |
| Msa0464850 | AT5G20250.2 | 42.857 | 147 | 79 | 2 | 12 | 156 | 590 | 733 | 8.53e-32 | 120 |
| Msa0464850 | AT1G55740.1 | 43.448 | 145 | 80 | 2 | 12 | 155 | 596 | 739 | 5.31e-29 | 112 |
| Msa0464850 | AT5G40390.1 | 28.916 | 166 | 103 | 4 | 4 | 168 | 632 | 783 | 1.44e-13 | 68.2 |
| Msa0464850 | AT3G57520.2 | 34.286 | 70 | 44 | 1 | 5 | 74 | 587 | 654 | 3.49e-11 | 61.2 |
Find 51 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGACACACTTAACCATTTC+AGG | 0.180824 | 3_3:+65058000 | Msa0464850:CDS |
| GCCTTCACCATCAAGTTTAA+TGG | 0.214336 | 3_3:-65058833 | None:intergenic |
| AAGAGGTTGCTGGTGAAAAT+TGG | 0.234540 | 3_3:+65058055 | Msa0464850:CDS |
| CATATGTATAAACAGGTATT+TGG | 0.294074 | 3_3:+65058586 | Msa0464850:intron |
| GGCAGAGGATGTGGCCGATT+TGG | 0.301018 | 3_3:+65058724 | Msa0464850:CDS |
| TTGCTTGACATGTACAATTC+AGG | 0.347876 | 3_3:+65058637 | Msa0464850:CDS |
| CATATGCAATTTGCGCCAAT+TGG | 0.348061 | 3_3:+65058613 | Msa0464850:CDS |
| TATATACAGTATCTCCAATC+AGG | 0.361816 | 3_3:+65058475 | Msa0464850:CDS |
| GTGGTTTCCGATGGTTTCAT+TGG | 0.376999 | 3_3:-65057976 | None:intergenic |
| AACATTCAAACCTGCATTGA+AGG | 0.378084 | 3_3:-65058100 | None:intergenic |
| TAATCCATCTTCAGAGTTGT+AGG | 0.389057 | 3_3:-65058806 | None:intergenic |
| GTATGCTTACGATAGGAGTT+AGG | 0.400367 | 3_3:-65058945 | None:intergenic |
| TTGGCCAGCTTCCTGCTCCT+TGG | 0.418002 | 3_3:-65057957 | None:intergenic |
| TTACTGACCATTAAACTTGA+TGG | 0.421279 | 3_3:+65058826 | Msa0464850:CDS |
| AACAAGAATCGACTTTCGCT+TGG | 0.426536 | 3_3:-65058903 | None:intergenic |
| GTCTTTAATTGCCAAGGAGC+AGG | 0.431429 | 3_3:+65057946 | Msa0464850:five_prime_UTR |
| TAGAAGAATTGTCCTGCATA+AGG | 0.432028 | 3_3:+65058668 | Msa0464850:CDS |
| GAGTTTCTTCAAGAGGTTGC+TGG | 0.438427 | 3_3:+65058045 | Msa0464850:CDS |
| AGGAAAATTAGAAGTATCCT+TGG | 0.441630 | 3_3:+65058434 | Msa0464850:CDS |
| GTCATAACACCAACCCTGAT+TGG | 0.447307 | 3_3:-65058489 | None:intergenic |
| ACAAGAATCGACTTTCGCTT+GGG | 0.471958 | 3_3:-65058902 | None:intergenic |
| ATTGCCAAGGAGCAGGAAGC+TGG | 0.478211 | 3_3:+65057953 | Msa0464850:five_prime_UTR |
| ATGACACGTTCTCATTCTAA+AGG | 0.486566 | 3_3:+65059062 | Msa0464850:three_prime_UTR |
| ATACTATATGCCTTCAATGC+AGG | 0.489268 | 3_3:+65058090 | Msa0464850:CDS |
| CATTGGAGTACGCTCCAAAT+CGG | 0.495713 | 3_3:-65058738 | None:intergenic |
| AAGTTGCTTGGTGGACATGC+AGG | 0.496836 | 3_3:+65058771 | Msa0464850:CDS |
| AACATCAAAGGCAGAGGATG+TGG | 0.504719 | 3_3:+65058715 | Msa0464850:CDS |
| ATTTGCAGCATCCCTTATGC+AGG | 0.524518 | 3_3:-65058680 | None:intergenic |
| CCTGAAATGGTTAAGTGTGT+CGG | 0.528035 | 3_3:-65058000 | None:intergenic |
| AGAAGAATTGTCCTGCATAA+GGG | 0.528389 | 3_3:+65058669 | Msa0464850:CDS |
| TACATGTCAAGCAATCCAAT+TGG | 0.532755 | 3_3:-65058628 | None:intergenic |
| TGATGTTGAGTTTCTTCAAG+AGG | 0.537617 | 3_3:+65058038 | Msa0464850:CDS |
| CTTGGTGGACATGCAGGAGA+AGG | 0.542712 | 3_3:+65058777 | Msa0464850:CDS |
| TGAAGAAACTCAACATCAAG+TGG | 0.552805 | 3_3:-65058033 | None:intergenic |
| TGTTAGACCGAAAAGTTGCT+TGG | 0.562615 | 3_3:+65058759 | Msa0464850:CDS |
| TGTGTCGGAGTGGTTTCCGA+TGG | 0.562930 | 3_3:-65057985 | None:intergenic |
| TTGATGGTGAAGGCAACTCA+AGG | 0.563996 | 3_3:+65058842 | Msa0464850:CDS |
| GACATAGAATTTGTATTCTG+AGG | 0.570441 | 3_3:+65058865 | Msa0464850:CDS |
| CTTTCCAAGCTGCCTAGTAG+AGG | 0.571601 | 3_3:+65058414 | Msa0464850:CDS |
| TAGACCGAAAAGTTGCTTGG+TGG | 0.578729 | 3_3:+65058762 | Msa0464850:CDS |
| TGCACAATAGTAAACATCAA+AGG | 0.596912 | 3_3:+65058703 | Msa0464850:CDS |
| ATAGTAAACATCAAAGGCAG+AGG | 0.608568 | 3_3:+65058709 | Msa0464850:CDS |
| ACCATTAAACTTGATGGTGA+AGG | 0.612381 | 3_3:+65058832 | Msa0464850:CDS |
| TTCACATTGAAGAGTCTCCA+AGG | 0.612594 | 3_3:-65058451 | None:intergenic |
| ATATACAGTATCTCCAATCA+GGG | 0.622646 | 3_3:+65058476 | Msa0464850:CDS |
| ATAGGCGTCTTTAATTGCCA+AGG | 0.624613 | 3_3:+65057940 | None:intergenic |
| GTTGCTGGTGAAAATTGGAA+TGG | 0.626737 | 3_3:+65058060 | Msa0464850:CDS |
| CTTGACATGTACAATTCAGG+AGG | 0.640277 | 3_3:+65058640 | Msa0464850:CDS |
| TGATGGTGAAGGCAACTCAA+GGG | 0.660992 | 3_3:+65058843 | Msa0464850:CDS |
| AAGCTGGCCAATGAAACCAT+CGG | 0.665066 | 3_3:+65057969 | Msa0464850:exon |
| AATGGTTAAGTGTGTCGGAG+TGG | 0.707685 | 3_3:-65057995 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTATATAAACACTTTTA+AGG | + | chr3_3:65058163-65058182 | Msa0464850:intron | 15.0% |
| !! | ATAAGCACTTAAATATATAA+AGG | + | chr3_3:65058316-65058335 | Msa0464850:intron | 15.0% |
| !! | TAAGCACTTAAATATATAAA+GGG | + | chr3_3:65058317-65058336 | Msa0464850:intron | 15.0% |
| !!! | TTTTATAACATTATTAGACT+TGG | - | chr3_3:65058560-65058579 | None:intergenic | 15.0% |
| !!! | TCTTTGAATTCTTTTTTATT+TGG | - | chr3_3:65059093-65059112 | None:intergenic | 15.0% |
| !!! | TACTTATATAAACACTTTTA+AGG | + | chr3_3:65058163-65058182 | Msa0464850:intron | 15.0% |
| !! | ATAAGCACTTAAATATATAA+AGG | + | chr3_3:65058316-65058335 | Msa0464850:intron | 15.0% |
| !! | TAAGCACTTAAATATATAAA+GGG | + | chr3_3:65058317-65058336 | Msa0464850:intron | 15.0% |
| !!! | TTTTATAACATTATTAGACT+TGG | - | chr3_3:65058560-65058579 | None:intergenic | 15.0% |
| !!! | TCTTTGAATTCTTTTTTATT+TGG | - | chr3_3:65059093-65059112 | None:intergenic | 15.0% |
| !! | AGGTTTGAATGTTAAATTTA+GGG | + | chr3_3:65058110-65058129 | Msa0464850:intron | 20.0% |
| !! | ATGTTAACATATGTATAAAC+AGG | + | chr3_3:65058579-65058598 | Msa0464850:intron | 20.0% |
| !!! | AATTTTTCATTGTACCAAAA+AGG | + | chr3_3:65058973-65058992 | Msa0464850:three_prime_UTR | 20.0% |
| !! | TCAAAGATACTTATTATCTA+AGG | + | chr3_3:65059106-65059125 | Msa0464850:three_prime_UTR | 20.0% |
| !! | AGGTTTGAATGTTAAATTTA+GGG | + | chr3_3:65058110-65058129 | Msa0464850:intron | 20.0% |
| !! | ATGTTAACATATGTATAAAC+AGG | + | chr3_3:65058579-65058598 | Msa0464850:intron | 20.0% |
| !!! | AATTTTTCATTGTACCAAAA+AGG | + | chr3_3:65058973-65058992 | Msa0464850:three_prime_UTR | 20.0% |
| ! | CAGGTTTGAATGTTAAATTT+AGG | + | chr3_3:65058109-65058128 | Msa0464850:intron | 25.0% |
| ! | ATAAGCTGAAAACAACTTAT+AGG | - | chr3_3:65058226-65058245 | None:intergenic | 25.0% |
| !!! | CTTATTTTCTTAAGCTTTTC+AGG | + | chr3_3:65058241-65058260 | Msa0464850:intron | 25.0% |
| ! | CATATGTATAAACAGGTATT+TGG | + | chr3_3:65058586-65058605 | Msa0464850:intron | 25.0% |
| !! | GAACAAATTCTTTACCTTTT+TGG | - | chr3_3:65058990-65059009 | None:intergenic | 25.0% |
| ! | CAGGTTTGAATGTTAAATTT+AGG | + | chr3_3:65058109-65058128 | Msa0464850:intron | 25.0% |
| ! | ATAAGCTGAAAACAACTTAT+AGG | - | chr3_3:65058226-65058245 | None:intergenic | 25.0% |
| !!! | CTTATTTTCTTAAGCTTTTC+AGG | + | chr3_3:65058241-65058260 | Msa0464850:intron | 25.0% |
| ! | CATATGTATAAACAGGTATT+TGG | + | chr3_3:65058586-65058605 | Msa0464850:intron | 25.0% |
| !! | GAACAAATTCTTTACCTTTT+TGG | - | chr3_3:65058990-65059009 | None:intergenic | 25.0% |
| ! | TACAAACTGTACAATTTTGC+AGG | + | chr3_3:65058387-65058406 | Msa0464850:intron | 30.0% |
| ! | ACTTCTAATTTTCCTCTACT+AGG | - | chr3_3:65058429-65058448 | None:intergenic | 30.0% |
| !! | AGGAAAATTAGAAGTATCCT+TGG | + | chr3_3:65058434-65058453 | Msa0464850:CDS | 30.0% |
| TATATACAGTATCTCCAATC+AGG | + | chr3_3:65058475-65058494 | Msa0464850:CDS | 30.0% | |
| ATATACAGTATCTCCAATCA+GGG | + | chr3_3:65058476-65058495 | Msa0464850:CDS | 30.0% | |
| TGCACAATAGTAAACATCAA+AGG | + | chr3_3:65058703-65058722 | Msa0464850:CDS | 30.0% | |
| TTACTGACCATTAAACTTGA+TGG | + | chr3_3:65058826-65058845 | Msa0464850:CDS | 30.0% | |
| GACATAGAATTTGTATTCTG+AGG | + | chr3_3:65058865-65058884 | Msa0464850:CDS | 30.0% | |
| ! | TTCTTTTGTATGCTTACGAT+AGG | - | chr3_3:65058955-65058974 | None:intergenic | 30.0% |
| ! | TACAAACTGTACAATTTTGC+AGG | + | chr3_3:65058387-65058406 | Msa0464850:intron | 30.0% |
| ! | ACTTCTAATTTTCCTCTACT+AGG | - | chr3_3:65058429-65058448 | None:intergenic | 30.0% |
| !! | AGGAAAATTAGAAGTATCCT+TGG | + | chr3_3:65058434-65058453 | Msa0464850:CDS | 30.0% |
| TATATACAGTATCTCCAATC+AGG | + | chr3_3:65058475-65058494 | Msa0464850:CDS | 30.0% | |
| ATATACAGTATCTCCAATCA+GGG | + | chr3_3:65058476-65058495 | Msa0464850:CDS | 30.0% | |
| TGCACAATAGTAAACATCAA+AGG | + | chr3_3:65058703-65058722 | Msa0464850:CDS | 30.0% | |
| TTACTGACCATTAAACTTGA+TGG | + | chr3_3:65058826-65058845 | Msa0464850:CDS | 30.0% | |
| GACATAGAATTTGTATTCTG+AGG | + | chr3_3:65058865-65058884 | Msa0464850:CDS | 30.0% | |
| ! | TTCTTTTGTATGCTTACGAT+AGG | - | chr3_3:65058955-65058974 | None:intergenic | 30.0% |
| ! | TGGTCTAACTTTTCCTGAAA+TGG | - | chr3_3:65058016-65058035 | None:intergenic | 35.0% |
| TGAAGAAACTCAACATCAAG+TGG | - | chr3_3:65058036-65058055 | None:intergenic | 35.0% | |
| TGATGTTGAGTTTCTTCAAG+AGG | + | chr3_3:65058038-65058057 | Msa0464850:CDS | 35.0% | |
| ATACTATATGCCTTCAATGC+AGG | + | chr3_3:65058090-65058109 | Msa0464850:CDS | 35.0% | |
| AACATTCAAACCTGCATTGA+AGG | - | chr3_3:65058103-65058122 | None:intergenic | 35.0% | |
| ! | TGTTAAATTTAGGGCATGTC+TGG | + | chr3_3:65058119-65058138 | Msa0464850:intron | 35.0% |
| TGTACAGTTTGTAAGCATGT+TGG | - | chr3_3:65058380-65058399 | None:intergenic | 35.0% | |
| TACATGTCAAGCAATCCAAT+TGG | - | chr3_3:65058631-65058650 | None:intergenic | 35.0% | |
| TTGCTTGACATGTACAATTC+AGG | + | chr3_3:65058637-65058656 | Msa0464850:CDS | 35.0% | |
| TAGAAGAATTGTCCTGCATA+AGG | + | chr3_3:65058668-65058687 | Msa0464850:CDS | 35.0% | |
| AGAAGAATTGTCCTGCATAA+GGG | + | chr3_3:65058669-65058688 | Msa0464850:CDS | 35.0% | |
| ATAGTAAACATCAAAGGCAG+AGG | + | chr3_3:65058709-65058728 | Msa0464850:CDS | 35.0% | |
| !! | TTTTCCTACAACTCTGAAGA+TGG | + | chr3_3:65058802-65058821 | Msa0464850:CDS | 35.0% |
| TAATCCATCTTCAGAGTTGT+AGG | - | chr3_3:65058809-65058828 | None:intergenic | 35.0% | |
| !! | ACCATTAAACTTGATGGTGA+AGG | + | chr3_3:65058832-65058851 | Msa0464850:CDS | 35.0% |
| ATGACACGTTCTCATTCTAA+AGG | + | chr3_3:65059062-65059081 | Msa0464850:three_prime_UTR | 35.0% | |
| ! | TGGTCTAACTTTTCCTGAAA+TGG | - | chr3_3:65058016-65058035 | None:intergenic | 35.0% |
| TGAAGAAACTCAACATCAAG+TGG | - | chr3_3:65058036-65058055 | None:intergenic | 35.0% | |
| TGATGTTGAGTTTCTTCAAG+AGG | + | chr3_3:65058038-65058057 | Msa0464850:CDS | 35.0% | |
| ATACTATATGCCTTCAATGC+AGG | + | chr3_3:65058090-65058109 | Msa0464850:CDS | 35.0% | |
| AACATTCAAACCTGCATTGA+AGG | - | chr3_3:65058103-65058122 | None:intergenic | 35.0% | |
| ! | TGTTAAATTTAGGGCATGTC+TGG | + | chr3_3:65058119-65058138 | Msa0464850:intron | 35.0% |
| TGTACAGTTTGTAAGCATGT+TGG | - | chr3_3:65058380-65058399 | None:intergenic | 35.0% | |
| TACATGTCAAGCAATCCAAT+TGG | - | chr3_3:65058631-65058650 | None:intergenic | 35.0% | |
| TTGCTTGACATGTACAATTC+AGG | + | chr3_3:65058637-65058656 | Msa0464850:CDS | 35.0% | |
| TAGAAGAATTGTCCTGCATA+AGG | + | chr3_3:65058668-65058687 | Msa0464850:CDS | 35.0% | |
| AGAAGAATTGTCCTGCATAA+GGG | + | chr3_3:65058669-65058688 | Msa0464850:CDS | 35.0% | |
| ATAGTAAACATCAAAGGCAG+AGG | + | chr3_3:65058709-65058728 | Msa0464850:CDS | 35.0% | |
| !! | TTTTCCTACAACTCTGAAGA+TGG | + | chr3_3:65058802-65058821 | Msa0464850:CDS | 35.0% |
| TAATCCATCTTCAGAGTTGT+AGG | - | chr3_3:65058809-65058828 | None:intergenic | 35.0% | |
| !! | ACCATTAAACTTGATGGTGA+AGG | + | chr3_3:65058832-65058851 | Msa0464850:CDS | 35.0% |
| ATGACACGTTCTCATTCTAA+AGG | + | chr3_3:65059062-65059081 | Msa0464850:three_prime_UTR | 35.0% | |
| CCTGAAATGGTTAAGTGTGT+CGG | - | chr3_3:65058003-65058022 | None:intergenic | 40.0% | |
| AAGAGGTTGCTGGTGAAAAT+TGG | + | chr3_3:65058055-65058074 | Msa0464850:CDS | 40.0% | |
| GTTGCTGGTGAAAATTGGAA+TGG | + | chr3_3:65058060-65058079 | Msa0464850:CDS | 40.0% | |
| ! | AGGCTGTTTGAGATAGCTTA+TGG | + | chr3_3:65058183-65058202 | Msa0464850:intron | 40.0% |
| TTCACATTGAAGAGTCTCCA+AGG | - | chr3_3:65058454-65058473 | None:intergenic | 40.0% | |
| CATATGCAATTTGCGCCAAT+TGG | + | chr3_3:65058613-65058632 | Msa0464850:CDS | 40.0% | |
| CTTGACATGTACAATTCAGG+AGG | + | chr3_3:65058640-65058659 | Msa0464850:CDS | 40.0% | |
| ! | GCAACTTTTCGGTCTAACAT+TGG | - | chr3_3:65058758-65058777 | None:intergenic | 40.0% |
| TGTTAGACCGAAAAGTTGCT+TGG | + | chr3_3:65058759-65058778 | Msa0464850:CDS | 40.0% | |
| ! | ATGTCCACCAAGCAACTTTT+CGG | - | chr3_3:65058769-65058788 | None:intergenic | 40.0% |
| GCCTTCACCATCAAGTTTAA+TGG | - | chr3_3:65058836-65058855 | None:intergenic | 40.0% | |
| ! | ACAAGAATCGACTTTCGCTT+GGG | - | chr3_3:65058905-65058924 | None:intergenic | 40.0% |
| ! | AACAAGAATCGACTTTCGCT+TGG | - | chr3_3:65058906-65058925 | None:intergenic | 40.0% |
| GTATGCTTACGATAGGAGTT+AGG | - | chr3_3:65058948-65058967 | None:intergenic | 40.0% | |
| CCTGAAATGGTTAAGTGTGT+CGG | - | chr3_3:65058003-65058022 | None:intergenic | 40.0% | |
| AAGAGGTTGCTGGTGAAAAT+TGG | + | chr3_3:65058055-65058074 | Msa0464850:CDS | 40.0% | |
| GTTGCTGGTGAAAATTGGAA+TGG | + | chr3_3:65058060-65058079 | Msa0464850:CDS | 40.0% | |
| ! | AGGCTGTTTGAGATAGCTTA+TGG | + | chr3_3:65058183-65058202 | Msa0464850:intron | 40.0% |
| TTCACATTGAAGAGTCTCCA+AGG | - | chr3_3:65058454-65058473 | None:intergenic | 40.0% | |
| CATATGCAATTTGCGCCAAT+TGG | + | chr3_3:65058613-65058632 | Msa0464850:CDS | 40.0% | |
| CTTGACATGTACAATTCAGG+AGG | + | chr3_3:65058640-65058659 | Msa0464850:CDS | 40.0% | |
| ! | GCAACTTTTCGGTCTAACAT+TGG | - | chr3_3:65058758-65058777 | None:intergenic | 40.0% |
| TGTTAGACCGAAAAGTTGCT+TGG | + | chr3_3:65058759-65058778 | Msa0464850:CDS | 40.0% | |
| ! | ATGTCCACCAAGCAACTTTT+CGG | - | chr3_3:65058769-65058788 | None:intergenic | 40.0% |
| GCCTTCACCATCAAGTTTAA+TGG | - | chr3_3:65058836-65058855 | None:intergenic | 40.0% | |
| ! | ACAAGAATCGACTTTCGCTT+GGG | - | chr3_3:65058905-65058924 | None:intergenic | 40.0% |
| ! | AACAAGAATCGACTTTCGCT+TGG | - | chr3_3:65058906-65058925 | None:intergenic | 40.0% |
| GTATGCTTACGATAGGAGTT+AGG | - | chr3_3:65058948-65058967 | None:intergenic | 40.0% | |
| GTCTTTAATTGCCAAGGAGC+AGG | + | chr3_3:65057946-65057965 | Msa0464850:five_prime_UTR | 45.0% | |
| AAGCTGGCCAATGAAACCAT+CGG | + | chr3_3:65057969-65057988 | Msa0464850:exon | 45.0% | |
| GTGGTTTCCGATGGTTTCAT+TGG | - | chr3_3:65057979-65057998 | None:intergenic | 45.0% | |
| AATGGTTAAGTGTGTCGGAG+TGG | - | chr3_3:65057998-65058017 | None:intergenic | 45.0% | |
| CCGACACACTTAACCATTTC+AGG | + | chr3_3:65058000-65058019 | Msa0464850:CDS | 45.0% | |
| GAGTTTCTTCAAGAGGTTGC+TGG | + | chr3_3:65058045-65058064 | Msa0464850:CDS | 45.0% | |
| ! | TTTTCCTCTACTAGGCAGCT+TGG | - | chr3_3:65058421-65058440 | None:intergenic | 45.0% |
| ACAGTATCTCCAATCAGGGT+TGG | + | chr3_3:65058480-65058499 | Msa0464850:intron | 45.0% | |
| GTCATAACACCAACCCTGAT+TGG | - | chr3_3:65058492-65058511 | None:intergenic | 45.0% | |
| ATTTGCAGCATCCCTTATGC+AGG | - | chr3_3:65058683-65058702 | None:intergenic | 45.0% | |
| AACATCAAAGGCAGAGGATG+TGG | + | chr3_3:65058715-65058734 | Msa0464850:CDS | 45.0% | |
| CATTGGAGTACGCTCCAAAT+CGG | - | chr3_3:65058741-65058760 | None:intergenic | 45.0% | |
| TAGACCGAAAAGTTGCTTGG+TGG | + | chr3_3:65058762-65058781 | Msa0464850:CDS | 45.0% | |
| !! | TTGATGGTGAAGGCAACTCA+AGG | + | chr3_3:65058842-65058861 | Msa0464850:CDS | 45.0% |
| ! | TGATGGTGAAGGCAACTCAA+GGG | + | chr3_3:65058843-65058862 | Msa0464850:CDS | 45.0% |
| GTCTTTAATTGCCAAGGAGC+AGG | + | chr3_3:65057946-65057965 | Msa0464850:five_prime_UTR | 45.0% | |
| AAGCTGGCCAATGAAACCAT+CGG | + | chr3_3:65057969-65057988 | Msa0464850:exon | 45.0% | |
| GTGGTTTCCGATGGTTTCAT+TGG | - | chr3_3:65057979-65057998 | None:intergenic | 45.0% | |
| AATGGTTAAGTGTGTCGGAG+TGG | - | chr3_3:65057998-65058017 | None:intergenic | 45.0% | |
| CCGACACACTTAACCATTTC+AGG | + | chr3_3:65058000-65058019 | Msa0464850:CDS | 45.0% | |
| GAGTTTCTTCAAGAGGTTGC+TGG | + | chr3_3:65058045-65058064 | Msa0464850:CDS | 45.0% | |
| ! | TTTTCCTCTACTAGGCAGCT+TGG | - | chr3_3:65058421-65058440 | None:intergenic | 45.0% |
| ACAGTATCTCCAATCAGGGT+TGG | + | chr3_3:65058480-65058499 | Msa0464850:intron | 45.0% | |
| GTCATAACACCAACCCTGAT+TGG | - | chr3_3:65058492-65058511 | None:intergenic | 45.0% | |
| ATTTGCAGCATCCCTTATGC+AGG | - | chr3_3:65058683-65058702 | None:intergenic | 45.0% | |
| AACATCAAAGGCAGAGGATG+TGG | + | chr3_3:65058715-65058734 | Msa0464850:CDS | 45.0% | |
| CATTGGAGTACGCTCCAAAT+CGG | - | chr3_3:65058741-65058760 | None:intergenic | 45.0% | |
| TAGACCGAAAAGTTGCTTGG+TGG | + | chr3_3:65058762-65058781 | Msa0464850:CDS | 45.0% | |
| !! | TTGATGGTGAAGGCAACTCA+AGG | + | chr3_3:65058842-65058861 | Msa0464850:CDS | 45.0% |
| ! | TGATGGTGAAGGCAACTCAA+GGG | + | chr3_3:65058843-65058862 | Msa0464850:CDS | 45.0% |
| CTTTCCAAGCTGCCTAGTAG+AGG | + | chr3_3:65058414-65058433 | Msa0464850:CDS | 50.0% | |
| ! | AAGTTGCTTGGTGGACATGC+AGG | + | chr3_3:65058771-65058790 | Msa0464850:CDS | 50.0% |
| CTTTCCAAGCTGCCTAGTAG+AGG | + | chr3_3:65058414-65058433 | Msa0464850:CDS | 50.0% | |
| ! | AAGTTGCTTGGTGGACATGC+AGG | + | chr3_3:65058771-65058790 | Msa0464850:CDS | 50.0% |
| ATTGCCAAGGAGCAGGAAGC+TGG | + | chr3_3:65057953-65057972 | Msa0464850:five_prime_UTR | 55.0% | |
| TGTGTCGGAGTGGTTTCCGA+TGG | - | chr3_3:65057988-65058007 | None:intergenic | 55.0% | |
| ! | CTTGGTGGACATGCAGGAGA+AGG | + | chr3_3:65058777-65058796 | Msa0464850:CDS | 55.0% |
| ATTGCCAAGGAGCAGGAAGC+TGG | + | chr3_3:65057953-65057972 | Msa0464850:five_prime_UTR | 55.0% | |
| TGTGTCGGAGTGGTTTCCGA+TGG | - | chr3_3:65057988-65058007 | None:intergenic | 55.0% | |
| ! | CTTGGTGGACATGCAGGAGA+AGG | + | chr3_3:65058777-65058796 | Msa0464850:CDS | 55.0% |
| TTGGCCAGCTTCCTGCTCCT+TGG | - | chr3_3:65057960-65057979 | None:intergenic | 60.0% | |
| GGCAGAGGATGTGGCCGATT+TGG | + | chr3_3:65058724-65058743 | Msa0464850:CDS | 60.0% | |
| TTGGCCAGCTTCCTGCTCCT+TGG | - | chr3_3:65057960-65057979 | None:intergenic | 60.0% | |
| GGCAGAGGATGTGGCCGATT+TGG | + | chr3_3:65058724-65058743 | Msa0464850:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 65057942 | 65059125 | 65057942 | ID=Msa0464850;Name=Msa0464850 |
| chr3_3 | mRNA | 65057942 | 65059125 | 65057942 | ID=Msa0464850-mRNA-1;Parent=Msa0464850;Name=Msa0464850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=37|1|1|1|1|1|3|240|168 |
| chr3_3 | exon | 65057942 | 65058111 | 65057942 | ID=Msa0464850-mRNA-1:exon:14394;Parent=Msa0464850-mRNA-1 |
| chr3_3 | exon | 65058409 | 65058497 | 65058409 | ID=Msa0464850-mRNA-1:exon:14395;Parent=Msa0464850-mRNA-1 |
| chr3_3 | exon | 65058601 | 65059125 | 65058601 | ID=Msa0464850-mRNA-1:exon:14396;Parent=Msa0464850-mRNA-1 |
| chr3_3 | five_prime_UTR | 65057942 | 65057978 | 65057942 | ID=Msa0464850-mRNA-1:five_prime_utr;Parent=Msa0464850-mRNA-1 |
| chr3_3 | CDS | 65057979 | 65058111 | 65057979 | ID=Msa0464850-mRNA-1:cds;Parent=Msa0464850-mRNA-1 |
| chr3_3 | CDS | 65058409 | 65058497 | 65058409 | ID=Msa0464850-mRNA-1:cds;Parent=Msa0464850-mRNA-1 |
| chr3_3 | CDS | 65058601 | 65058885 | 65058601 | ID=Msa0464850-mRNA-1:cds;Parent=Msa0464850-mRNA-1 |
| chr3_3 | three_prime_UTR | 65058886 | 65059125 | 65058886 | ID=Msa0464850-mRNA-1:three_prime_utr;Parent=Msa0464850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
