Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460350 | KEH35018.1 | 95.495 | 555 | 25 | 0 | 63 | 617 | 1 | 555 | 0.0 | 1078 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460350 | sp|Q94A08|RFS2_ARATH | 54.383 | 559 | 241 | 3 | 63 | 616 | 1 | 550 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460350 | A0A072V0X6 | 95.495 | 555 | 25 | 0 | 63 | 617 | 1 | 555 | 0.0 | 1078 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0370910 | Msa0460350 | 0.816133 | 6.471968e-52 | -8.615850e-47 |
| Msa0419010 | Msa0460350 | 0.862745 | 4.077583e-64 | -8.615850e-47 |
| Msa0460350 | Msa0510520 | 0.818907 | 1.533726e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460350 | MtrunA17_Chr3g0116641 | 95.495 | 555 | 25 | 0 | 63 | 617 | 1 | 555 | 0.0 | 1077 |
| Msa0460350 | MtrunA17_Chr1g0173521 | 51.903 | 578 | 251 | 4 | 49 | 616 | 38 | 598 | 0.0 | 596 |
| Msa0460350 | MtrunA17_Chr5g0447201 | 49.291 | 564 | 275 | 3 | 63 | 617 | 1 | 562 | 0.0 | 594 |
| Msa0460350 | MtrunA17_Chr4g0064311 | 46.691 | 559 | 273 | 5 | 63 | 616 | 98 | 636 | 8.47e-180 | 530 |
| Msa0460350 | MtrunA17_Chr7g0257731 | 56.997 | 393 | 166 | 1 | 226 | 615 | 2 | 394 | 1.93e-160 | 473 |
| Msa0460350 | MtrunA17_Chr3g0117141 | 37.331 | 592 | 312 | 11 | 61 | 617 | 22 | 589 | 1.63e-135 | 414 |
| Msa0460350 | MtrunA17_Chr4g0058701 | 37.522 | 581 | 308 | 12 | 70 | 617 | 23 | 581 | 1.98e-132 | 406 |
| Msa0460350 | MtrunA17_Chr6g0449521 | 37.955 | 577 | 305 | 11 | 71 | 617 | 37 | 590 | 2.38e-132 | 406 |
| Msa0460350 | MtrunA17_Chr1g0201161 | 31.994 | 622 | 312 | 13 | 85 | 617 | 58 | 657 | 8.75e-95 | 311 |
| Msa0460350 | MtrunA17_Chr7g0267991 | 40.856 | 257 | 140 | 3 | 368 | 615 | 407 | 660 | 6.47e-59 | 212 |
| Msa0460350 | MtrunA17_Chr7g0267991 | 34.221 | 263 | 149 | 3 | 85 | 341 | 54 | 298 | 1.25e-41 | 161 |
| Msa0460350 | MtrunA17_Chr8g0380141 | 34.985 | 343 | 197 | 7 | 296 | 615 | 312 | 651 | 3.68e-58 | 207 |
| Msa0460350 | MtrunA17_Chr8g0380141 | 33.083 | 266 | 148 | 4 | 85 | 341 | 53 | 297 | 2.62e-41 | 159 |
| Msa0460350 | MtrunA17_Chr7g0270181 | 41.558 | 154 | 88 | 2 | 464 | 615 | 12 | 165 | 2.53e-33 | 131 |
| Msa0460350 | MtrunA17_Chr7g0257741 | 38.961 | 154 | 80 | 2 | 63 | 212 | 1 | 144 | 7.37e-30 | 115 |
| Msa0460350 | MtrunA17_Chr5g0427081 | 74.419 | 43 | 11 | 0 | 575 | 617 | 10 | 52 | 9.91e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460350 | AT3G57520.3 | 54.367 | 561 | 242 | 3 | 63 | 618 | 1 | 552 | 0.0 | 655 |
| Msa0460350 | AT3G57520.1 | 54.383 | 559 | 241 | 3 | 63 | 616 | 1 | 550 | 0.0 | 655 |
| Msa0460350 | AT3G57520.2 | 54.383 | 559 | 241 | 3 | 63 | 616 | 1 | 550 | 0.0 | 654 |
| Msa0460350 | AT1G55740.1 | 49.645 | 564 | 266 | 3 | 63 | 617 | 1 | 555 | 0.0 | 559 |
| Msa0460350 | AT5G20250.3 | 45.893 | 560 | 285 | 7 | 63 | 616 | 1 | 548 | 8.82e-175 | 515 |
| Msa0460350 | AT5G20250.1 | 45.893 | 560 | 285 | 7 | 63 | 616 | 1 | 548 | 8.82e-175 | 515 |
| Msa0460350 | AT5G20250.2 | 45.893 | 560 | 285 | 7 | 63 | 616 | 1 | 548 | 8.82e-175 | 515 |
| Msa0460350 | AT5G20250.4 | 45.811 | 561 | 286 | 7 | 62 | 616 | 95 | 643 | 8.48e-174 | 515 |
| Msa0460350 | AT5G40390.1 | 38.475 | 577 | 315 | 10 | 70 | 617 | 23 | 588 | 2.31e-135 | 414 |
| Msa0460350 | AT4G01970.1 | 38.258 | 264 | 148 | 6 | 364 | 615 | 412 | 672 | 1.67e-52 | 194 |
| Msa0460350 | AT4G01970.1 | 35.211 | 284 | 142 | 4 | 83 | 342 | 49 | 314 | 8.20e-45 | 171 |
| Msa0460350 | AT4G01970.2 | 38.258 | 264 | 148 | 6 | 364 | 615 | 459 | 719 | 2.41e-52 | 194 |
| Msa0460350 | AT4G01970.2 | 35.211 | 284 | 142 | 4 | 83 | 342 | 96 | 361 | 8.39e-45 | 171 |
Find 142 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTCGAGATTGTTTGTTTC+AGG | 0.138623 | 3_3:+57661339 | Msa0460350:CDS |
| CTAATGTTTCTATCAAATTT+TGG | 0.150455 | 3_3:-57660578 | None:intergenic |
| CATTCTCTTCTTGCCTGTTT+TGG | 0.169995 | 3_3:+57659296 | Msa0460350:CDS |
| AAGAAGGTTGGTTAATTTAT+AGG | 0.228856 | 3_3:-57658541 | None:intergenic |
| TTTCTGTCATCTTGAAAATA+AGG | 0.241361 | 3_3:+57659706 | Msa0460350:CDS |
| AGAAGGTTGGTTAATTTATA+GGG | 0.248956 | 3_3:-57658540 | None:intergenic |
| CCTGTACATCTTGATTTGTT+TGG | 0.257621 | 3_3:+57659734 | Msa0460350:CDS |
| ACAACTCTGATTCAATTTAC+AGG | 0.265456 | 3_3:+57660709 | Msa0460350:CDS |
| GCATGCTTTAGCTGGTTATT+GGG | 0.271441 | 3_3:+57660335 | Msa0460350:CDS |
| GGCATGCTTTAGCTGGTTAT+TGG | 0.294226 | 3_3:+57660334 | Msa0460350:CDS |
| TTCCTAATGACATAGGATAT+TGG | 0.303139 | 3_3:+57659667 | Msa0460350:intron |
| AAAATATATGCAGGGGATAT+AGG | 0.312570 | 3_3:+57659100 | Msa0460350:intron |
| CTTTATTTAGAGTCAAAATA+TGG | 0.313807 | 3_3:+57659130 | Msa0460350:CDS |
| GTCTACAAACATGACTATTT+CGG | 0.314200 | 3_3:+57658695 | Msa0460350:CDS |
| TACTGGGTTCCTTCAATTAT+CGG | 0.317199 | 3_3:-57660001 | None:intergenic |
| AGGCACTCGTCCTTCACTTT+AGG | 0.317254 | 3_3:-57658723 | None:intergenic |
| GAGGGACATTTGTGAGAATC+AGG | 0.326336 | 3_3:-57658761 | None:intergenic |
| ATCCAGTAATGGATGGTAAA+AGG | 0.326549 | 3_3:+57661362 | Msa0460350:CDS |
| AACAAGGCTGATAGACATTA+AGG | 0.327395 | 3_3:+57660108 | Msa0460350:CDS |
| CAAAATTTGATAGAAACATT+AGG | 0.332651 | 3_3:+57660579 | Msa0460350:CDS |
| GAGGCAGTATTTGTAAATTC+AGG | 0.334499 | 3_3:+57659527 | Msa0460350:CDS |
| TTGATAGAAACATTAGGTTC+AGG | 0.347566 | 3_3:+57660585 | Msa0460350:CDS |
| AAAGGATAGTTGAATTTGTT+AGG | 0.360007 | 3_3:-57658609 | None:intergenic |
| GAATCTTTGATTAGCTCAAA+TGG | 0.384220 | 3_3:-57659557 | None:intergenic |
| GAGAGATATTTGTGCCAGAC+TGG | 0.399133 | 3_3:+57660937 | Msa0460350:CDS |
| GTGGAACCAGCTGACTGAAT+TGG | 0.406736 | 3_3:-57660414 | None:intergenic |
| ACATGTAAGGTTTGAAATGT+TGG | 0.411578 | 3_3:-57660882 | None:intergenic |
| AAAGCAGATCCTGCTGAAAC+AGG | 0.415681 | 3_3:-57658801 | None:intergenic |
| GTTTGAAATGTTGGTTCCCT+TGG | 0.415913 | 3_3:-57660873 | None:intergenic |
| TGTCCATGGCTATATCTCTA+AGG | 0.420570 | 3_3:-57660443 | None:intergenic |
| CATGCAGCAGCAAGAGCAAT+AGG | 0.421395 | 3_3:+57661093 | Msa0460350:CDS |
| AGATATAGCCATGGACAGCC+TGG | 0.423263 | 3_3:+57660449 | Msa0460350:CDS |
| GTTGTTTCTCCTGTTTCAGC+AGG | 0.423456 | 3_3:+57658792 | Msa0460350:CDS |
| AAGTTTATCATCGTTGATGA+TGG | 0.424891 | 3_3:+57659938 | Msa0460350:CDS |
| AGTGAAGGACGAGTGCCTTA+TGG | 0.427110 | 3_3:+57658728 | Msa0460350:CDS |
| CGAAAGGCTCCATCCAAAAC+AGG | 0.427176 | 3_3:-57659309 | None:intergenic |
| AACCACTTTCAACGCAGAAC+TGG | 0.437017 | 3_3:-57659365 | None:intergenic |
| TGAATTGGATATACAAGCTT+CGG | 0.437132 | 3_3:-57660399 | None:intergenic |
| ATTTGTTTGGATGGTGCACT+TGG | 0.437449 | 3_3:+57659747 | Msa0460350:CDS |
| GAGGTGGGGTGGAAGAAGGT+TGG | 0.439759 | 3_3:-57658553 | None:intergenic |
| GTGGTTGTGCAGTATATGTT+AGG | 0.445136 | 3_3:+57661115 | Msa0460350:CDS |
| TGATAGAAACATTAGGTTCA+GGG | 0.448878 | 3_3:+57660586 | Msa0460350:CDS |
| ATTTGAGGTGGGGTGGAAGA+AGG | 0.449587 | 3_3:-57658557 | None:intergenic |
| ATTCAGTCAGCTGGTTCCAC+AGG | 0.456336 | 3_3:+57660417 | Msa0460350:CDS |
| AAGAAGCTAGTACTACCTAA+TGG | 0.457727 | 3_3:+57661283 | Msa0460350:CDS |
| CTTGCTAGCTGTGGCGTCGA+TGG | 0.462315 | 3_3:+57660540 | Msa0460350:CDS |
| TACATCTTGATTTGTTTGGA+TGG | 0.464444 | 3_3:+57659738 | Msa0460350:CDS |
| AGCTACCGACGCAACATGTA+AGG | 0.465646 | 3_3:-57660895 | None:intergenic |
| CTGGTGATGGTTGTATCGTA+TGG | 0.466048 | 3_3:-57658405 | None:intergenic |
| GCTCTCAAGACTGATCCATT+AGG | 0.466280 | 3_3:-57661298 | None:intergenic |
| TACATGTGGCATGCTTTAGC+TGG | 0.471549 | 3_3:+57660327 | Msa0460350:CDS |
| GTATATCCAATTCAGTCAGC+TGG | 0.476978 | 3_3:+57660408 | Msa0460350:CDS |
| GACGTGTTTCATTAACAAAA+CGG | 0.477430 | 3_3:+57660616 | Msa0460350:CDS |
| AGGCAGTATTTGTAAATTCA+GGG | 0.482966 | 3_3:+57659528 | Msa0460350:CDS |
| CCAAACAAATCAAGATGTAC+AGG | 0.483982 | 3_3:-57659734 | None:intergenic |
| CTATTGCTCTTGCTGCTGCA+TGG | 0.489450 | 3_3:-57661092 | None:intergenic |
| TCAGGTTGCCCCTCACCATA+AGG | 0.490694 | 3_3:-57658743 | None:intergenic |
| ACATGACGGGAACTAGGAAT+AGG | 0.497061 | 3_3:-57658840 | None:intergenic |
| AGAAGCAATTGAGTTTCCAT+TGG | 0.497684 | 3_3:-57659192 | None:intergenic |
| ACTTGGAACATGTCCCAGTC+TGG | 0.497856 | 3_3:-57660951 | None:intergenic |
| GTCTTGAGAGCAAGATATGC+TGG | 0.497867 | 3_3:+57661310 | Msa0460350:CDS |
| GCCTTTCGCGCAACTTTGCA+AGG | 0.499278 | 3_3:+57659324 | Msa0460350:CDS |
| CTCCAGTTCTGCGTTGAAAG+TGG | 0.500103 | 3_3:+57659363 | Msa0460350:CDS |
| CATGCTTTAGCTGGTTATTG+GGG | 0.500822 | 3_3:+57660336 | Msa0460350:CDS |
| TCCCGTCATGTCTTCACCCT+CGG | 0.502127 | 3_3:+57658852 | Msa0460350:CDS |
| TCCTTGCAAAGTTGCGCGAA+AGG | 0.505821 | 3_3:-57659325 | None:intergenic |
| GTGAAGACATGACGGGAACT+AGG | 0.507395 | 3_3:-57658846 | None:intergenic |
| GAGATTGTTGCAAGAACTGT+TGG | 0.507789 | 3_3:-57660158 | None:intergenic |
| GCAAGCAGTGGACAAACAAC+TGG | 0.511353 | 3_3:-57658424 | None:intergenic |
| TCTTCACCCTCGGCACTCTC+CGG | 0.511704 | 3_3:+57658862 | Msa0460350:CDS |
| CTAGAACTAGAACTAGGATA+AGG | 0.516913 | 3_3:-57658333 | None:intergenic |
| TTTGTTTCAGGATCCAGTAA+TGG | 0.516931 | 3_3:+57661351 | Msa0460350:CDS |
| TCATCAACGATGATAAACTT+TGG | 0.518122 | 3_3:-57659935 | None:intergenic |
| TGCAGTAGCAAGAGCATCTG+AGG | 0.518388 | 3_3:+57660842 | Msa0460350:CDS |
| ATGATGAATTGTAGAATTTG+AGG | 0.519620 | 3_3:-57658572 | None:intergenic |
| GCTTTAGCTGGTTATTGGGG+AGG | 0.526230 | 3_3:+57660339 | Msa0460350:CDS |
| TGGTGATGGTTGTATCGTAT+GGG | 0.526403 | 3_3:-57658404 | None:intergenic |
| GGAAACTCAATTGCTTCTAG+TGG | 0.531099 | 3_3:+57659197 | Msa0460350:CDS |
| GAAGGCGAACCGATAATTGA+AGG | 0.534207 | 3_3:+57659992 | Msa0460350:CDS |
| AATTTACAAATACTGCCTCA+TGG | 0.536522 | 3_3:-57659523 | None:intergenic |
| GGATTGTGAAGTTTGAACAT+AGG | 0.539175 | 3_3:-57659501 | None:intergenic |
| GGTGGATGATACCACGTGTT+GGG | 0.540503 | 3_3:+57659151 | Msa0460350:CDS |
| CTAGAACTAGAACTAGAACT+AGG | 0.542461 | 3_3:-57658339 | None:intergenic |
| TTATCATCGTTGATGATGGA+TGG | 0.546645 | 3_3:+57659942 | Msa0460350:CDS |
| AATGAAGTTGAGAATGTGAA+AGG | 0.547559 | 3_3:-57658627 | None:intergenic |
| CACAGTTATCTTGCTAGCTG+TGG | 0.548683 | 3_3:+57660531 | Msa0460350:CDS |
| ATTTACAAATACTGCCTCAT+GGG | 0.552987 | 3_3:-57659522 | None:intergenic |
| TGATAGAGTCAATAAAATCA+TGG | 0.554811 | 3_3:-57660180 | None:intergenic |
| AAATCCACAAGGAATAAAAG+AGG | 0.555557 | 3_3:+57659790 | Msa0460350:CDS |
| TGAATTGTAGAATTTGAGGT+GGG | 0.555814 | 3_3:-57658568 | None:intergenic |
| AATTTGAAGTTCAGAAGTGA+TGG | 0.558269 | 3_3:+57660133 | Msa0460350:CDS |
| TTTCAGGATCCAGTAATGGA+TGG | 0.559262 | 3_3:+57661355 | Msa0460350:CDS |
| TTCCATTGGAACATCGCTTG+CGG | 0.560083 | 3_3:-57659178 | None:intergenic |
| GGACGAGTGCCTTATGGTGA+GGG | 0.560118 | 3_3:+57658734 | Msa0460350:CDS |
| ATGCATTACAGTGATAAGCC+TGG | 0.563441 | 3_3:+57661238 | Msa0460350:intron |
| ATCCGCAAGCGATGTTCCAA+TGG | 0.563712 | 3_3:+57659176 | Msa0460350:CDS |
| TTCGGTTGTACCTAAAGTGA+AGG | 0.566143 | 3_3:+57658713 | Msa0460350:CDS |
| TGCCGAGGGTGAAGACATGA+CGG | 0.575394 | 3_3:-57658854 | None:intergenic |
| AGGTTGGTTAATTTATAGGG+AGG | 0.575908 | 3_3:-57658537 | None:intergenic |
| TTGTAGAATTTGAGGTGGGG+TGG | 0.575999 | 3_3:-57658564 | None:intergenic |
| AGAGATATTTGTGCCAGACT+GGG | 0.590054 | 3_3:+57660938 | Msa0460350:CDS |
| ATGAATTGTAGAATTTGAGG+TGG | 0.590485 | 3_3:-57658569 | None:intergenic |
| ATCTGAGGATTTCATGCCAA+GGG | 0.592867 | 3_3:+57660857 | Msa0460350:CDS |
| TTTGTTTGGATGGTGCACTT+GGG | 0.600213 | 3_3:+57659748 | Msa0460350:CDS |
| TGTGAGACATGCAACAAATG+AGG | 0.600971 | 3_3:-57660689 | None:intergenic |
| GAATAAAAGAGGGCATTCAA+AGG | 0.601533 | 3_3:+57659801 | Msa0460350:CDS |
| TATTTAGAGTCAAAATATGG+TGG | 0.602078 | 3_3:+57659133 | Msa0460350:CDS |
| GACTTACCGGAGAGTGCCGA+GGG | 0.602477 | 3_3:-57658868 | None:intergenic |
| TTGTTGGAGTATGCAAGCAG+TGG | 0.603376 | 3_3:-57658436 | None:intergenic |
| TTAAACAGTCTCTCAAGTGG+AGG | 0.605758 | 3_3:+57659905 | Msa0460350:intron |
| GAAACATTAGGTTCAGGGTG+CGG | 0.606140 | 3_3:+57660591 | Msa0460350:CDS |
| ACATTAGGTTCAGGGTGCGG+TGG | 0.606763 | 3_3:+57660594 | Msa0460350:CDS |
| AACAGGCAAGAAGAGAATGT+AGG | 0.609281 | 3_3:-57659292 | None:intergenic |
| TTTGTAGAGCAAGCACGAGA+CGG | 0.614843 | 3_3:+57661062 | Msa0460350:intron |
| AGGACGAGTGCCTTATGGTG+AGG | 0.621258 | 3_3:+57658733 | Msa0460350:CDS |
| AATATGTTAGGTTTGCAACA+AGG | 0.621827 | 3_3:+57660092 | Msa0460350:intron |
| GGCAGTATTTGTAAATTCAG+GGG | 0.622919 | 3_3:+57659529 | Msa0460350:CDS |
| TTCAGTCAGCTGGTTCCACA+GGG | 0.625466 | 3_3:+57660418 | Msa0460350:CDS |
| AATCCACAAGGAATAAAAGA+GGG | 0.625484 | 3_3:+57659791 | Msa0460350:CDS |
| AGACTTACCGGAGAGTGCCG+AGG | 0.626415 | 3_3:-57658869 | None:intergenic |
| GCCGAGGGTGAAGACATGAC+GGG | 0.627661 | 3_3:-57658853 | None:intergenic |
| TCCGCAGATACGTTTACATG+TGG | 0.628225 | 3_3:+57660313 | Msa0460350:intron |
| GGTGATGGTTGTATCGTATG+GGG | 0.628240 | 3_3:-57658403 | None:intergenic |
| CATTAGAGACATCAATAGCA+AGG | 0.628449 | 3_3:+57660649 | Msa0460350:CDS |
| CATCTGAGGATTTCATGCCA+AGG | 0.631175 | 3_3:+57660856 | Msa0460350:CDS |
| AAATTAAACAGTCTCTCAAG+TGG | 0.633332 | 3_3:+57659902 | Msa0460350:intron |
| ACAAACAATCTCGAGTAGGA+CGG | 0.638323 | 3_3:-57661333 | None:intergenic |
| CTTGCGGATTTCCCAACACG+TGG | 0.644530 | 3_3:-57659162 | None:intergenic |
| TACTCTAAAGTAAATCCACA+AGG | 0.645250 | 3_3:+57659779 | Msa0460350:CDS |
| TGAAACAAACAATCTCGAGT+AGG | 0.658675 | 3_3:-57661337 | None:intergenic |
| TCAAACCTTACATGTTGCGT+CGG | 0.663563 | 3_3:+57660890 | Msa0460350:CDS |
| GACGAGTGCCTTATGGTGAG+GGG | 0.667610 | 3_3:+57658735 | Msa0460350:CDS |
| GAACTGGAGCTCGTTTAACG+CGG | 0.676671 | 3_3:-57659349 | None:intergenic |
| AGTGGACAAACAACTGGTGA+TGG | 0.676726 | 3_3:-57658418 | None:intergenic |
| TGGTGGATGATACCACGTGT+TGG | 0.678677 | 3_3:+57659150 | Msa0460350:CDS |
| GAACCTTAGAGATATAGCCA+TGG | 0.685161 | 3_3:+57660440 | Msa0460350:CDS |
| GAATTGTAGAATTTGAGGTG+GGG | 0.685584 | 3_3:-57658567 | None:intergenic |
| AGGATATTGGAGAAACACAA+AGG | 0.687687 | 3_3:+57659680 | Msa0460350:intron |
| GTGATGGTTGTATCGTATGG+GGG | 0.697861 | 3_3:-57658402 | None:intergenic |
| GCAGCAGCAAGAGCAATAGG+TGG | 0.714549 | 3_3:+57661096 | Msa0460350:CDS |
| TCAAACTTCACAATCCCATG+AGG | 0.752833 | 3_3:+57659508 | Msa0460350:CDS |
| TATATCTCTAAGGTTCCCTG+TGG | 0.766010 | 3_3:-57660433 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGAAATAATATACTA+AGG | - | chr3_3:57659050-57659069 | None:intergenic | 10.0% |
| !! | TTCAATTAATACAATTAAAA+AGG | - | chr3_3:57661193-57661212 | None:intergenic | 10.0% |
| !! | TGTATTTAAAAAATATATGC+AGG | + | chr3_3:57659091-57659110 | Msa0460350:intron | 15.0% |
| !! | GTATTTAAAAAATATATGCA+GGG | + | chr3_3:57659092-57659111 | Msa0460350:intron | 15.0% |
| !! | TATTTAAAAAATATATGCAG+GGG | + | chr3_3:57659093-57659112 | Msa0460350:intron | 15.0% |
| !!! | TAAAAGTCATAAAATTTTGA+TGG | - | chr3_3:57660501-57660520 | None:intergenic | 15.0% |
| !! | CTTAACAAATTAAAAAACGT+TGG | + | chr3_3:57658483-57658502 | Msa0460350:five_prime_UTR | 20.0% |
| !! | TTCATTATTAGCTAACTTAT+CGG | - | chr3_3:57658973-57658992 | None:intergenic | 20.0% |
| !!! | CTTTATTTAGAGTCAAAATA+TGG | + | chr3_3:57659130-57659149 | Msa0460350:CDS | 20.0% |
| !!! | ATTTTTATTCCTAATGACAT+AGG | + | chr3_3:57659660-57659679 | Msa0460350:intron | 20.0% |
| !!! | TACAATGAATTTTTCAAAGA+AGG | + | chr3_3:57659974-57659993 | Msa0460350:CDS | 20.0% |
| !!! | CACATCTTTTATAATATGTT+AGG | + | chr3_3:57660080-57660099 | Msa0460350:intron | 20.0% |
| !!! | CTAATGTTTCTATCAAATTT+TGG | - | chr3_3:57660581-57660600 | None:intergenic | 20.0% |
| !! | CAAAATTTGATAGAAACATT+AGG | + | chr3_3:57660579-57660598 | Msa0460350:CDS | 20.0% |
| !!! | TACAATTAAAAAGGTTTTTG+CGG | - | chr3_3:57661184-57661203 | None:intergenic | 20.0% |
| !! | AGAAGGTTGGTTAATTTATA+GGG | - | chr3_3:57658543-57658562 | None:intergenic | 25.0% |
| !! | AAGAAGGTTGGTTAATTTAT+AGG | - | chr3_3:57658544-57658563 | None:intergenic | 25.0% |
| ! | ATGATGAATTGTAGAATTTG+AGG | - | chr3_3:57658575-57658594 | None:intergenic | 25.0% |
| !! | AAAGGATAGTTGAATTTGTT+AGG | - | chr3_3:57658612-57658631 | None:intergenic | 25.0% |
| !! | TATTTAGAGTCAAAATATGG+TGG | + | chr3_3:57659133-57659152 | Msa0460350:CDS | 25.0% |
| !!! | CTTTGATTTTTGAATGCTTT+AGG | + | chr3_3:57659473-57659492 | Msa0460350:intron | 25.0% |
| ! | ACACAATGTTTATTAGAGTT+TGG | + | chr3_3:57659621-57659640 | Msa0460350:intron | 25.0% |
| ! | CACAATGTTTATTAGAGTTT+GGG | + | chr3_3:57659622-57659641 | Msa0460350:intron | 25.0% |
| ! | TTTCTGTCATCTTGAAAATA+AGG | + | chr3_3:57659706-57659725 | Msa0460350:CDS | 25.0% |
| !! | ATCAAAGTTTTCAAATTTGC+AGG | - | chr3_3:57659863-57659882 | None:intergenic | 25.0% |
| ! | TGATAGAGTCAATAAAATCA+TGG | - | chr3_3:57660183-57660202 | None:intergenic | 25.0% |
| ! | CTTAAGTTAATGAGAATCAT+GGG | - | chr3_3:57660267-57660286 | None:intergenic | 25.0% |
| ! | TCTTAAGTTAATGAGAATCA+TGG | - | chr3_3:57660268-57660287 | None:intergenic | 25.0% |
| ! | CAATTGAGAGTAATGAAAAA+AGG | - | chr3_3:57660806-57660825 | None:intergenic | 25.0% |
| ! | AATGAGACAAGAATATTACT+TGG | - | chr3_3:57660971-57660990 | None:intergenic | 25.0% |
| ! | ATCAAGAATTCTATCAGATT+TGG | - | chr3_3:57661148-57661167 | None:intergenic | 25.0% |
| !! | ACAATTAAAAAGGTTTTTGC+GGG | - | chr3_3:57661183-57661202 | None:intergenic | 25.0% |
| !!! | ATTTTAAAATCATGATTGCC+AGG | - | chr3_3:57661259-57661278 | None:intergenic | 25.0% |
| ! | TGAATTGTAGAATTTGAGGT+GGG | - | chr3_3:57658571-57658590 | None:intergenic | 30.0% |
| ATGAATTGTAGAATTTGAGG+TGG | - | chr3_3:57658572-57658591 | None:intergenic | 30.0% | |
| AATGAAGTTGAGAATGTGAA+AGG | - | chr3_3:57658630-57658649 | None:intergenic | 30.0% | |
| GTCTACAAACATGACTATTT+CGG | + | chr3_3:57658695-57658714 | Msa0460350:CDS | 30.0% | |
| !! | GAGAAACAACAATGTTTTGA+GGG | - | chr3_3:57658782-57658801 | None:intergenic | 30.0% |
| TCTGCTATAAGAAAAGAGAA+GGG | - | chr3_3:57658898-57658917 | None:intergenic | 30.0% | |
| ATCTGCTATAAGAAAAGAGA+AGG | - | chr3_3:57658899-57658918 | None:intergenic | 30.0% | |
| AAAATATATGCAGGGGATAT+AGG | + | chr3_3:57659100-57659119 | Msa0460350:intron | 30.0% | |
| ATTTACAAATACTGCCTCAT+GGG | - | chr3_3:57659525-57659544 | None:intergenic | 30.0% | |
| AATTTACAAATACTGCCTCA+TGG | - | chr3_3:57659526-57659545 | None:intergenic | 30.0% | |
| AGGCAGTATTTGTAAATTCA+GGG | + | chr3_3:57659528-57659547 | Msa0460350:CDS | 30.0% | |
| ! | GAATCTTTGATTAGCTCAAA+TGG | - | chr3_3:57659560-57659579 | None:intergenic | 30.0% |
| TAAACATTGTGTAGAGAGTA+TGG | - | chr3_3:57659613-57659632 | None:intergenic | 30.0% | |
| TTCCTAATGACATAGGATAT+TGG | + | chr3_3:57659667-57659686 | Msa0460350:intron | 30.0% | |
| !! | TACATCTTGATTTGTTTGGA+TGG | + | chr3_3:57659738-57659757 | Msa0460350:CDS | 30.0% |
| !! | TACTCTAAAGTAAATCCACA+AGG | + | chr3_3:57659779-57659798 | Msa0460350:CDS | 30.0% |
| AAATCCACAAGGAATAAAAG+AGG | + | chr3_3:57659790-57659809 | Msa0460350:CDS | 30.0% | |
| AATCCACAAGGAATAAAAGA+GGG | + | chr3_3:57659791-57659810 | Msa0460350:CDS | 30.0% | |
| AAATTAAACAGTCTCTCAAG+TGG | + | chr3_3:57659902-57659921 | Msa0460350:intron | 30.0% | |
| TCATCAACGATGATAAACTT+TGG | - | chr3_3:57659938-57659957 | None:intergenic | 30.0% | |
| ! | AAGTTTATCATCGTTGATGA+TGG | + | chr3_3:57659938-57659957 | Msa0460350:CDS | 30.0% |
| ATTGAAATGAGAGACTTACT+GGG | - | chr3_3:57660020-57660039 | None:intergenic | 30.0% | |
| AATTGAAATGAGAGACTTAC+TGG | - | chr3_3:57660021-57660040 | None:intergenic | 30.0% | |
| AATATGTTAGGTTTGCAACA+AGG | + | chr3_3:57660092-57660111 | Msa0460350:intron | 30.0% | |
| ! | AATTTGAAGTTCAGAAGTGA+TGG | + | chr3_3:57660133-57660152 | Msa0460350:CDS | 30.0% |
| ATAGGCTTCTTATTGAGATA+AGG | - | chr3_3:57660233-57660252 | None:intergenic | 30.0% | |
| ! | TTTTCATTGCGTTTGAAGAT+GGG | - | chr3_3:57660371-57660390 | None:intergenic | 30.0% |
| ! | TTTTTCATTGCGTTTGAAGA+TGG | - | chr3_3:57660372-57660391 | None:intergenic | 30.0% |
| TGAATTGGATATACAAGCTT+CGG | - | chr3_3:57660402-57660421 | None:intergenic | 30.0% | |
| TTGATAGAAACATTAGGTTC+AGG | + | chr3_3:57660585-57660604 | Msa0460350:CDS | 30.0% | |
| TGATAGAAACATTAGGTTCA+GGG | + | chr3_3:57660586-57660605 | Msa0460350:CDS | 30.0% | |
| GACGTGTTTCATTAACAAAA+CGG | + | chr3_3:57660616-57660635 | Msa0460350:CDS | 30.0% | |
| ACAACTCTGATTCAATTTAC+AGG | + | chr3_3:57660709-57660728 | Msa0460350:CDS | 30.0% | |
| AAGGATGATTCATCAGAAAA+AGG | - | chr3_3:57660787-57660806 | None:intergenic | 30.0% | |
| ! | ACATGTAAGGTTTGAAATGT+TGG | - | chr3_3:57660885-57660904 | None:intergenic | 30.0% |
| ! | CAATTAAAAAGGTTTTTGCG+GGG | - | chr3_3:57661182-57661201 | None:intergenic | 30.0% |
| CTAGAACTAGAACTAGGATA+AGG | - | chr3_3:57658336-57658355 | None:intergenic | 35.0% | |
| CTAGAACTAGAACTAGAACT+AGG | - | chr3_3:57658342-57658361 | None:intergenic | 35.0% | |
| !! | GCTTTGACTCGAAATTTTGT+TGG | - | chr3_3:57658455-57658474 | None:intergenic | 35.0% |
| ! | AGGTTGGTTAATTTATAGGG+AGG | - | chr3_3:57658540-57658559 | None:intergenic | 35.0% |
| ! | GAATTGTAGAATTTGAGGTG+GGG | - | chr3_3:57658570-57658589 | None:intergenic | 35.0% |
| ! | GGAGAAACAACAATGTTTTG+AGG | - | chr3_3:57658783-57658802 | None:intergenic | 35.0% |
| AGAAGCAATTGAGTTTCCAT+TGG | - | chr3_3:57659195-57659214 | None:intergenic | 35.0% | |
| GGATTGTGAAGTTTGAACAT+AGG | - | chr3_3:57659504-57659523 | None:intergenic | 35.0% | |
| GAGGCAGTATTTGTAAATTC+AGG | + | chr3_3:57659527-57659546 | Msa0460350:CDS | 35.0% | |
| GGCAGTATTTGTAAATTCAG+GGG | + | chr3_3:57659529-57659548 | Msa0460350:CDS | 35.0% | |
| CTCCAATATCCTATGTCATT+AGG | - | chr3_3:57659672-57659691 | None:intergenic | 35.0% | |
| AGGATATTGGAGAAACACAA+AGG | + | chr3_3:57659680-57659699 | Msa0460350:intron | 35.0% | |
| CCAAACAAATCAAGATGTAC+AGG | - | chr3_3:57659737-57659756 | None:intergenic | 35.0% | |
| !! | CCTGTACATCTTGATTTGTT+TGG | + | chr3_3:57659734-57659753 | Msa0460350:CDS | 35.0% |
| !! | GAATAAAAGAGGGCATTCAA+AGG | + | chr3_3:57659801-57659820 | Msa0460350:CDS | 35.0% |
| AATTTGCAGGCTTATCACAT+AGG | - | chr3_3:57659850-57659869 | None:intergenic | 35.0% | |
| !! | TTATCATCGTTGATGATGGA+TGG | + | chr3_3:57659942-57659961 | Msa0460350:CDS | 35.0% |
| TACTGGGTTCCTTCAATTAT+CGG | - | chr3_3:57660004-57660023 | None:intergenic | 35.0% | |
| GCATGAGAACTAAGAAATGA+AGG | - | chr3_3:57660059-57660078 | None:intergenic | 35.0% | |
| AACAAGGCTGATAGACATTA+AGG | + | chr3_3:57660108-57660127 | Msa0460350:CDS | 35.0% | |
| AGTTAATGAGAATCATGGGA+TGG | - | chr3_3:57660263-57660282 | None:intergenic | 35.0% | |
| TGAACAAGCATACTCATTGT+CGG | - | chr3_3:57660292-57660311 | None:intergenic | 35.0% | |
| CATTAGAGACATCAATAGCA+AGG | + | chr3_3:57660649-57660668 | Msa0460350:CDS | 35.0% | |
| ! | AGCTTTTAACAGTCTTCTTC+TGG | + | chr3_3:57660914-57660933 | Msa0460350:CDS | 35.0% |
| ! | GCTTTTAACAGTCTTCTTCT+GGG | + | chr3_3:57660915-57660934 | Msa0460350:CDS | 35.0% |
| ! | TCTGAAAATGTTGATGAGTC+TGG | + | chr3_3:57661010-57661029 | Msa0460350:intron | 35.0% |
| AAGAAGCTAGTACTACCTAA+TGG | + | chr3_3:57661283-57661302 | Msa0460350:CDS | 35.0% | |
| TGAAACAAACAATCTCGAGT+AGG | - | chr3_3:57661340-57661359 | None:intergenic | 35.0% | |
| TACTCGAGATTGTTTGTTTC+AGG | + | chr3_3:57661339-57661358 | Msa0460350:CDS | 35.0% | |
| TTTGTTTCAGGATCCAGTAA+TGG | + | chr3_3:57661351-57661370 | Msa0460350:CDS | 35.0% | |
| !! | ATCCAGTAATGGATGGTAAA+AGG | + | chr3_3:57661362-57661381 | Msa0460350:CDS | 35.0% |
| ! | TACCTTTTACCATCCATTAC+TGG | - | chr3_3:57661367-57661386 | None:intergenic | 35.0% |
| !! | TGGTGATGGTTGTATCGTAT+GGG | - | chr3_3:57658407-57658426 | None:intergenic | 40.0% |
| TTCGGTTGTACCTAAAGTGA+AGG | + | chr3_3:57658713-57658732 | Msa0460350:CDS | 40.0% | |
| !!! | TCAGCAGGATCTGCTTTTTT+AGG | + | chr3_3:57658807-57658826 | Msa0460350:CDS | 40.0% |
| ! | AACTTATCGGCTATCAGCTA+CGG | - | chr3_3:57658960-57658979 | None:intergenic | 40.0% |
| GGAAACTCAATTGCTTCTAG+TGG | + | chr3_3:57659197-57659216 | Msa0460350:CDS | 40.0% | |
| AACAGGCAAGAAGAGAATGT+AGG | - | chr3_3:57659295-57659314 | None:intergenic | 40.0% | |
| ! | CATTCTCTTCTTGCCTGTTT+TGG | + | chr3_3:57659296-57659315 | Msa0460350:CDS | 40.0% |
| TCAAACTTCACAATCCCATG+AGG | + | chr3_3:57659508-57659527 | Msa0460350:CDS | 40.0% | |
| ATTTGTTTGGATGGTGCACT+TGG | + | chr3_3:57659747-57659766 | Msa0460350:CDS | 40.0% | |
| TTTGTTTGGATGGTGCACTT+GGG | + | chr3_3:57659748-57659767 | Msa0460350:CDS | 40.0% | |
| ! | ATGCCCTCTTTTATTCCTTG+TGG | - | chr3_3:57659797-57659816 | None:intergenic | 40.0% |
| TTAAACAGTCTCTCAAGTGG+AGG | + | chr3_3:57659905-57659924 | Msa0460350:intron | 40.0% | |
| GAGATTGTTGCAAGAACTGT+TGG | - | chr3_3:57660161-57660180 | None:intergenic | 40.0% | |
| TCATGGGATGGAAGTTCAAT+AGG | - | chr3_3:57660251-57660270 | None:intergenic | 40.0% | |
| GCATGCTTTAGCTGGTTATT+GGG | + | chr3_3:57660335-57660354 | Msa0460350:CDS | 40.0% | |
| CATGCTTTAGCTGGTTATTG+GGG | + | chr3_3:57660336-57660355 | Msa0460350:CDS | 40.0% | |
| GTATATCCAATTCAGTCAGC+TGG | + | chr3_3:57660408-57660427 | Msa0460350:CDS | 40.0% | |
| !! | TATATCTCTAAGGTTCCCTG+TGG | - | chr3_3:57660436-57660455 | None:intergenic | 40.0% |
| GAACCTTAGAGATATAGCCA+TGG | + | chr3_3:57660440-57660459 | Msa0460350:CDS | 40.0% | |
| TGTCCATGGCTATATCTCTA+AGG | - | chr3_3:57660446-57660465 | None:intergenic | 40.0% | |
| ! | ATATTTTTCCAGGCTGTCCA+TGG | - | chr3_3:57660460-57660479 | None:intergenic | 40.0% |
| ATGGACAGCCTGGAAAAATA+TGG | + | chr3_3:57660459-57660478 | Msa0460350:CDS | 40.0% | |
| AGCCTGGAAAAATATGGAGT+GGG | + | chr3_3:57660465-57660484 | Msa0460350:CDS | 40.0% | |
| ! | TTCCCACTCCATATTTTTCC+AGG | - | chr3_3:57660470-57660489 | None:intergenic | 40.0% |
| TGTGAGACATGCAACAAATG+AGG | - | chr3_3:57660692-57660711 | None:intergenic | 40.0% | |
| ATCTGAGGATTTCATGCCAA+GGG | + | chr3_3:57660857-57660876 | Msa0460350:CDS | 40.0% | |
| !! | GTTTGAAATGTTGGTTCCCT+TGG | - | chr3_3:57660876-57660895 | None:intergenic | 40.0% |
| TCAAACCTTACATGTTGCGT+CGG | + | chr3_3:57660890-57660909 | Msa0460350:CDS | 40.0% | |
| AGAGATATTTGTGCCAGACT+GGG | + | chr3_3:57660938-57660957 | Msa0460350:CDS | 40.0% | |
| GTGGTTGTGCAGTATATGTT+AGG | + | chr3_3:57661115-57661134 | Msa0460350:CDS | 40.0% | |
| ATGCATTACAGTGATAAGCC+TGG | + | chr3_3:57661238-57661257 | Msa0460350:intron | 40.0% | |
| ACAAACAATCTCGAGTAGGA+CGG | - | chr3_3:57661336-57661355 | None:intergenic | 40.0% | |
| ! | TTTCAGGATCCAGTAATGGA+TGG | + | chr3_3:57661355-57661374 | Msa0460350:CDS | 40.0% |
| TTGTATCGTATGGGGGAAAC+AGG | - | chr3_3:57658398-57658417 | None:intergenic | 45.0% | |
| GTGATGGTTGTATCGTATGG+GGG | - | chr3_3:57658405-57658424 | None:intergenic | 45.0% | |
| ! | GGTGATGGTTGTATCGTATG+GGG | - | chr3_3:57658406-57658425 | None:intergenic | 45.0% |
| !! | CTGGTGATGGTTGTATCGTA+TGG | - | chr3_3:57658408-57658427 | None:intergenic | 45.0% |
| AGTGGACAAACAACTGGTGA+TGG | - | chr3_3:57658421-57658440 | None:intergenic | 45.0% | |
| TTGTTGGAGTATGCAAGCAG+TGG | - | chr3_3:57658439-57658458 | None:intergenic | 45.0% | |
| ! | TTGTAGAATTTGAGGTGGGG+TGG | - | chr3_3:57658567-57658586 | None:intergenic | 45.0% |
| GAGGGACATTTGTGAGAATC+AGG | - | chr3_3:57658764-57658783 | None:intergenic | 45.0% | |
| !! | GTTGTTTCTCCTGTTTCAGC+AGG | + | chr3_3:57658792-57658811 | Msa0460350:CDS | 45.0% |
| AAAGCAGATCCTGCTGAAAC+AGG | - | chr3_3:57658804-57658823 | None:intergenic | 45.0% | |
| ! | ACATGACGGGAACTAGGAAT+AGG | - | chr3_3:57658843-57658862 | None:intergenic | 45.0% |
| AGAGAAGGGATGAGACTTAC+CGG | - | chr3_3:57658884-57658903 | None:intergenic | 45.0% | |
| TTCCATTGGAACATCGCTTG+CGG | - | chr3_3:57659181-57659200 | None:intergenic | 45.0% | |
| !! | CTCTTCTTGCCTGTTTTGGA+TGG | + | chr3_3:57659300-57659319 | Msa0460350:CDS | 45.0% |
| AACCACTTTCAACGCAGAAC+TGG | - | chr3_3:57659368-57659387 | None:intergenic | 45.0% | |
| GAAGGCGAACCGATAATTGA+AGG | + | chr3_3:57659992-57660011 | Msa0460350:CDS | 45.0% | |
| TCCGCAGATACGTTTACATG+TGG | + | chr3_3:57660313-57660332 | Msa0460350:intron | 45.0% | |
| GCCACATGTAAACGTATCTG+CGG | - | chr3_3:57660317-57660336 | None:intergenic | 45.0% | |
| TACATGTGGCATGCTTTAGC+TGG | + | chr3_3:57660327-57660346 | Msa0460350:CDS | 45.0% | |
| GGCATGCTTTAGCTGGTTAT+TGG | + | chr3_3:57660334-57660353 | Msa0460350:CDS | 45.0% | |
| CAGCCTGGAAAAATATGGAG+TGG | + | chr3_3:57660464-57660483 | Msa0460350:CDS | 45.0% | |
| CACAGTTATCTTGCTAGCTG+TGG | + | chr3_3:57660531-57660550 | Msa0460350:CDS | 45.0% | |
| GAAACATTAGGTTCAGGGTG+CGG | + | chr3_3:57660591-57660610 | Msa0460350:CDS | 45.0% | |
| CATCTGAGGATTTCATGCCA+AGG | + | chr3_3:57660856-57660875 | Msa0460350:CDS | 45.0% | |
| GAGAGATATTTGTGCCAGAC+TGG | + | chr3_3:57660937-57660956 | Msa0460350:CDS | 45.0% | |
| TTTGTAGAGCAAGCACGAGA+CGG | + | chr3_3:57661062-57661081 | Msa0460350:intron | 45.0% | |
| GCTCTCAAGACTGATCCATT+AGG | - | chr3_3:57661301-57661320 | None:intergenic | 45.0% | |
| GTCTTGAGAGCAAGATATGC+TGG | + | chr3_3:57661310-57661329 | Msa0460350:CDS | 45.0% | |
| GCAAGCAGTGGACAAACAAC+TGG | - | chr3_3:57658427-57658446 | None:intergenic | 50.0% | |
| ! | ATTTGAGGTGGGGTGGAAGA+AGG | - | chr3_3:57658560-57658579 | None:intergenic | 50.0% |
| AGGCACTCGTCCTTCACTTT+AGG | - | chr3_3:57658726-57658745 | None:intergenic | 50.0% | |
| AGTGAAGGACGAGTGCCTTA+TGG | + | chr3_3:57658728-57658747 | Msa0460350:CDS | 50.0% | |
| ! | GTGAAGACATGACGGGAACT+AGG | - | chr3_3:57658849-57658868 | None:intergenic | 50.0% |
| ! | TGGTGGATGATACCACGTGT+TGG | + | chr3_3:57659150-57659169 | Msa0460350:CDS | 50.0% |
| GGTGGATGATACCACGTGTT+GGG | + | chr3_3:57659151-57659170 | Msa0460350:CDS | 50.0% | |
| ATCCGCAAGCGATGTTCCAA+TGG | + | chr3_3:57659176-57659195 | Msa0460350:CDS | 50.0% | |
| CGAAAGGCTCCATCCAAAAC+AGG | - | chr3_3:57659312-57659331 | None:intergenic | 50.0% | |
| TCCTTGCAAAGTTGCGCGAA+AGG | - | chr3_3:57659328-57659347 | None:intergenic | 50.0% | |
| GAACTGGAGCTCGTTTAACG+CGG | - | chr3_3:57659352-57659371 | None:intergenic | 50.0% | |
| CTCCAGTTCTGCGTTGAAAG+TGG | + | chr3_3:57659363-57659382 | Msa0460350:CDS | 50.0% | |
| GCTTTAGCTGGTTATTGGGG+AGG | + | chr3_3:57660339-57660358 | Msa0460350:CDS | 50.0% | |
| GTGGAACCAGCTGACTGAAT+TGG | - | chr3_3:57660417-57660436 | None:intergenic | 50.0% | |
| ! | ATTCAGTCAGCTGGTTCCAC+AGG | + | chr3_3:57660417-57660436 | Msa0460350:CDS | 50.0% |
| ! | TTCAGTCAGCTGGTTCCACA+GGG | + | chr3_3:57660418-57660437 | Msa0460350:CDS | 50.0% |
| AGATATAGCCATGGACAGCC+TGG | + | chr3_3:57660449-57660468 | Msa0460350:CDS | 50.0% | |
| !! | TGCAGTAGCAAGAGCATCTG+AGG | + | chr3_3:57660842-57660861 | Msa0460350:CDS | 50.0% |
| AGCTACCGACGCAACATGTA+AGG | - | chr3_3:57660898-57660917 | None:intergenic | 50.0% | |
| ACTTGGAACATGTCCCAGTC+TGG | - | chr3_3:57660954-57660973 | None:intergenic | 50.0% | |
| CTATTGCTCTTGCTGCTGCA+TGG | - | chr3_3:57661095-57661114 | None:intergenic | 50.0% | |
| CATGCAGCAGCAAGAGCAAT+AGG | + | chr3_3:57661093-57661112 | Msa0460350:CDS | 50.0% | |
| AGGACGAGTGCCTTATGGTG+AGG | + | chr3_3:57658733-57658752 | Msa0460350:CDS | 55.0% | |
| GGACGAGTGCCTTATGGTGA+GGG | + | chr3_3:57658734-57658753 | Msa0460350:CDS | 55.0% | |
| GACGAGTGCCTTATGGTGAG+GGG | + | chr3_3:57658735-57658754 | Msa0460350:CDS | 55.0% | |
| ! | TCAGGTTGCCCCTCACCATA+AGG | - | chr3_3:57658746-57658765 | None:intergenic | 55.0% |
| TCCCGTCATGTCTTCACCCT+CGG | + | chr3_3:57658852-57658871 | Msa0460350:CDS | 55.0% | |
| TGCCGAGGGTGAAGACATGA+CGG | - | chr3_3:57658857-57658876 | None:intergenic | 55.0% | |
| CTTGCGGATTTCCCAACACG+TGG | - | chr3_3:57659165-57659184 | None:intergenic | 55.0% | |
| GCCTTTCGCGCAACTTTGCA+AGG | + | chr3_3:57659324-57659343 | Msa0460350:CDS | 55.0% | |
| ACATTAGGTTCAGGGTGCGG+TGG | + | chr3_3:57660594-57660613 | Msa0460350:CDS | 55.0% | |
| GCAGCAGCAAGAGCAATAGG+TGG | + | chr3_3:57661096-57661115 | Msa0460350:CDS | 55.0% | |
| GAGGTGGGGTGGAAGAAGGT+TGG | - | chr3_3:57658556-57658575 | None:intergenic | 60.0% | |
| GCCGAGGGTGAAGACATGAC+GGG | - | chr3_3:57658856-57658875 | None:intergenic | 60.0% | |
| TCTTCACCCTCGGCACTCTC+CGG | + | chr3_3:57658862-57658881 | Msa0460350:CDS | 60.0% | |
| !! | GACTTACCGGAGAGTGCCGA+GGG | - | chr3_3:57658871-57658890 | None:intergenic | 60.0% |
| !! | AGACTTACCGGAGAGTGCCG+AGG | - | chr3_3:57658872-57658891 | None:intergenic | 60.0% |
| ! | CTTGCTAGCTGTGGCGTCGA+TGG | + | chr3_3:57660540-57660559 | Msa0460350:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 57658330 | 57661387 | 57658330 | ID=Msa0460350;Name=Msa0460350 |
| chr3_3 | mRNA | 57658330 | 57661387 | 57658330 | ID=Msa0460350-mRNA-1;Parent=Msa0460350;Name=Msa0460350-mRNA-1;_AED=0.10;_eAED=0.10;_QI=189|1|0.9|1|1|1|10|0|618 |
| chr3_3 | exon | 57658330 | 57658883 | 57658330 | ID=Msa0460350-mRNA-1:exon:11745;Parent=Msa0460350-mRNA-1 |
| chr3_3 | exon | 57659113 | 57659384 | 57659113 | ID=Msa0460350-mRNA-1:exon:11746;Parent=Msa0460350-mRNA-1 |
| chr3_3 | exon | 57659495 | 57659585 | 57659495 | ID=Msa0460350-mRNA-1:exon:11747;Parent=Msa0460350-mRNA-1 |
| chr3_3 | exon | 57659682 | 57659822 | 57659682 | ID=Msa0460350-mRNA-1:exon:11748;Parent=Msa0460350-mRNA-1 |
| chr3_3 | exon | 57659913 | 57660020 | 57659913 | ID=Msa0460350-mRNA-1:exon:11749;Parent=Msa0460350-mRNA-1 |
| chr3_3 | exon | 57660102 | 57660221 | 57660102 | ID=Msa0460350-mRNA-1:exon:11750;Parent=Msa0460350-mRNA-1 |
| chr3_3 | exon | 57660320 | 57660730 | 57660320 | ID=Msa0460350-mRNA-1:exon:11751;Parent=Msa0460350-mRNA-1 |
| chr3_3 | exon | 57660830 | 57660971 | 57660830 | ID=Msa0460350-mRNA-1:exon:11752;Parent=Msa0460350-mRNA-1 |
| chr3_3 | exon | 57661069 | 57661136 | 57661069 | ID=Msa0460350-mRNA-1:exon:11753;Parent=Msa0460350-mRNA-1 |
| chr3_3 | exon | 57661249 | 57661387 | 57661249 | ID=Msa0460350-mRNA-1:exon:11754;Parent=Msa0460350-mRNA-1 |
| chr3_3 | five_prime_UTR | 57658330 | 57658518 | 57658330 | ID=Msa0460350-mRNA-1:five_prime_utr;Parent=Msa0460350-mRNA-1 |
| chr3_3 | CDS | 57658519 | 57658883 | 57658519 | ID=Msa0460350-mRNA-1:cds;Parent=Msa0460350-mRNA-1 |
| chr3_3 | CDS | 57659113 | 57659384 | 57659113 | ID=Msa0460350-mRNA-1:cds;Parent=Msa0460350-mRNA-1 |
| chr3_3 | CDS | 57659495 | 57659585 | 57659495 | ID=Msa0460350-mRNA-1:cds;Parent=Msa0460350-mRNA-1 |
| chr3_3 | CDS | 57659682 | 57659822 | 57659682 | ID=Msa0460350-mRNA-1:cds;Parent=Msa0460350-mRNA-1 |
| chr3_3 | CDS | 57659913 | 57660020 | 57659913 | ID=Msa0460350-mRNA-1:cds;Parent=Msa0460350-mRNA-1 |
| chr3_3 | CDS | 57660102 | 57660221 | 57660102 | ID=Msa0460350-mRNA-1:cds;Parent=Msa0460350-mRNA-1 |
| chr3_3 | CDS | 57660320 | 57660730 | 57660320 | ID=Msa0460350-mRNA-1:cds;Parent=Msa0460350-mRNA-1 |
| chr3_3 | CDS | 57660830 | 57660971 | 57660830 | ID=Msa0460350-mRNA-1:cds;Parent=Msa0460350-mRNA-1 |
| chr3_3 | CDS | 57661069 | 57661136 | 57661069 | ID=Msa0460350-mRNA-1:cds;Parent=Msa0460350-mRNA-1 |
| chr3_3 | CDS | 57661249 | 57661387 | 57661249 | ID=Msa0460350-mRNA-1:cds;Parent=Msa0460350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
