Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422300 | XP_003601857.2 | 97.849 | 465 | 10 | 0 | 1 | 465 | 1 | 465 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422300 | sp|Q8H1F2|RGS1_ARATH | 63.636 | 462 | 162 | 3 | 1 | 461 | 1 | 457 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422300 | G7J2K1 | 97.849 | 465 | 10 | 0 | 1 | 465 | 1 | 465 | 0.0 | 942 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422300 | Msa0468780 | 0.961161 | 2.210738e-119 | -8.615850e-47 |
| Msa0422300 | Msa0468830 | 0.983958 | 3.463266e-159 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422300 | MtrunA17_Chr3g0123191 | 97.849 | 465 | 10 | 0 | 1 | 465 | 1 | 465 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422300 | AT3G26090.1 | 63.636 | 462 | 162 | 3 | 1 | 461 | 1 | 457 | 0.0 | 634 |
| Msa0422300 | AT3G26090.2 | 66.247 | 397 | 133 | 1 | 1 | 397 | 1 | 396 | 0.0 | 571 |
Find 133 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTAAAGGCAGTGGTTTC+TGG | 0.139148 | 3_2:+71456677 | Msa0422300:CDS |
| TGCTAAGAGGCTTCTTTATA+TGG | 0.206814 | 3_2:-71457704 | None:intergenic |
| CAACCTTCTTCTATCAATTA+TGG | 0.226071 | 3_2:+71456729 | Msa0422300:CDS |
| TTGTGGACACTAACCATAAA+TGG | 0.245948 | 3_2:-71459879 | None:intergenic |
| CGCACAATGGGCCAGGCTTT+GGG | 0.270464 | 3_2:+71458462 | Msa0422300:CDS |
| TTCTCTTGAACAAGAAATTC+AGG | 0.271912 | 3_2:+71458559 | Msa0422300:CDS |
| CACATTCCTCCTGGAACTTC+AGG | 0.290302 | 3_2:-71459630 | None:intergenic |
| CATTTGTTCTGTCAGTTGTA+TGG | 0.298681 | 3_2:+71458115 | Msa0422300:intron |
| TCGCACAATGGGCCAGGCTT+TGG | 0.310716 | 3_2:+71458461 | Msa0422300:CDS |
| AAACTAATAATCAGAATTAA+AGG | 0.311010 | 3_2:-71460173 | None:intergenic |
| AAAGAATAAGTGGAATTAAA+AGG | 0.316374 | 3_2:-71457304 | None:intergenic |
| AGATACTTTAACCACTTCTT+AGG | 0.319174 | 3_2:+71460064 | Msa0422300:three_prime_UTR |
| CTGGCAACAACTTGAATTAC+AGG | 0.331361 | 3_2:-71456703 | None:intergenic |
| ATTGAGAAGTACATAGTTGC+AGG | 0.335851 | 3_2:+71459114 | Msa0422300:CDS |
| AGCTTATCCAATGGTTCATT+AGG | 0.342753 | 3_2:-71458537 | None:intergenic |
| GCCCATTGTGCGAAATTCTC+TGG | 0.360100 | 3_2:-71458451 | None:intergenic |
| TATATCTACAGTTGCTTGGC+TGG | 0.366042 | 3_2:+71459000 | Msa0422300:intron |
| AATCTTCTTCCTGAAGTTCC+AGG | 0.366374 | 3_2:+71459621 | Msa0422300:CDS |
| ATGTAGGAAGGAAGACAAAA+AGG | 0.367948 | 3_2:+71459914 | Msa0422300:three_prime_UTR |
| GGTGAAGGTCCACTAGGGTT+TGG | 0.369983 | 3_2:+71457051 | Msa0422300:CDS |
| CCCTGGATTGTAGGTGCTGC+TGG | 0.385271 | 3_2:+71457329 | Msa0422300:CDS |
| TATCTTTCAGGCTTCTCATA+TGG | 0.386081 | 3_2:+71456620 | Msa0422300:intron |
| AGATTCAGTTTCTGTTCATC+AGG | 0.386118 | 3_2:-71455974 | None:intergenic |
| CAAAACTAAAAGAAGAAATC+TGG | 0.386884 | 3_2:-71458196 | None:intergenic |
| TGTATGTTGCCACTTTGGTT+GGG | 0.390598 | 3_2:+71457781 | Msa0422300:CDS |
| TGTGATAATACCCCACTATC+AGG | 0.396001 | 3_2:-71458489 | None:intergenic |
| CTGTGCATCATATAGAGTTC+AGG | 0.397383 | 3_2:+71457814 | Msa0422300:CDS |
| AGAACTTGGCAAAAGATTAC+TGG | 0.399670 | 3_2:+71459593 | Msa0422300:intron |
| ATTTGTTCTGTCAGTTGTAT+GGG | 0.411134 | 3_2:+71458116 | Msa0422300:intron |
| CTGCGTGAGAAGAATCTATA+TGG | 0.411292 | 3_2:+71459080 | Msa0422300:CDS |
| CTACCATAATTGATAGAAGA+AGG | 0.423216 | 3_2:-71456732 | None:intergenic |
| TTATTTCCAGTTTGGGGTGA+AGG | 0.425413 | 3_2:+71457036 | Msa0422300:intron |
| TCCAGAGAATTTCGCACAAT+GGG | 0.425473 | 3_2:+71458450 | Msa0422300:CDS |
| GGCTAGTATCATGTACATCT+TGG | 0.427662 | 3_2:+71459984 | Msa0422300:three_prime_UTR |
| TTAGGATCTACCCTCGAAAT+CGG | 0.434650 | 3_2:-71458519 | None:intergenic |
| TTGTATGTTGCCACTTTGGT+TGG | 0.435848 | 3_2:+71457780 | Msa0422300:CDS |
| TTGTTAACATCTGTATAGTC+AGG | 0.438021 | 3_2:+71459963 | Msa0422300:three_prime_UTR |
| CCGACTCATGACTTGGTACT+TGG | 0.448826 | 3_2:+71459788 | Msa0422300:exon |
| GTCATACAAAGGACGTCGTT+AGG | 0.450004 | 3_2:-71460148 | None:intergenic |
| AACACATGAAGGCAAACAAC+TGG | 0.456389 | 3_2:-71457759 | None:intergenic |
| CATCTCTCATAGAAGCAAAC+AGG | 0.456965 | 3_2:+71459382 | Msa0422300:CDS |
| CACAAGGTTCCTCGTACTAA+AGG | 0.459346 | 3_2:+71456664 | Msa0422300:CDS |
| TCAAATTTGAAAAGAGCCAT+TGG | 0.462101 | 3_2:+71456895 | Msa0422300:CDS |
| TCTTCTCACGCAGTCATGTT+CGG | 0.462374 | 3_2:-71459070 | None:intergenic |
| ATAGATATAGGGAAATTGTT+AGG | 0.463486 | 3_2:+71455840 | None:intergenic |
| AGAATTTCGCACAATGGGCC+AGG | 0.465661 | 3_2:+71458455 | Msa0422300:CDS |
| ACCAGCAGCACCTACAATCC+AGG | 0.466696 | 3_2:-71457330 | None:intergenic |
| AAAGGCTAGCATACTTGTGT+TGG | 0.468592 | 3_2:+71458365 | Msa0422300:intron |
| GCTTTGGGCATACCTGATAG+TGG | 0.472370 | 3_2:+71458477 | Msa0422300:CDS |
| ATCTCATATCACATTCCTCC+TGG | 0.475428 | 3_2:-71459639 | None:intergenic |
| AGAAGATGATCATGGTGAAA+AGG | 0.477104 | 3_2:-71459739 | None:intergenic |
| TGATGAACAGAAACTGAATC+TGG | 0.483642 | 3_2:+71455976 | Msa0422300:five_prime_UTR |
| ATCCAGGGCAAAAGAATAAG+TGG | 0.484753 | 3_2:-71457314 | None:intergenic |
| TGTGGGACAGCCACCTTTGA+CGG | 0.487114 | 3_2:-71456045 | None:intergenic |
| GCTAGTATCATGTACATCTT+GGG | 0.487898 | 3_2:+71459985 | Msa0422300:three_prime_UTR |
| GTTTGGGGTGAAGGTCCACT+AGG | 0.490024 | 3_2:+71457045 | Msa0422300:intron |
| AGGAACCTTGTGAACTATGA+AGG | 0.490710 | 3_2:-71456653 | None:intergenic |
| TAAAGTATCTTGAAAAGTGT+AGG | 0.491284 | 3_2:-71460051 | None:intergenic |
| GTGAGGAGGTGTATGTAGGA+AGG | 0.492586 | 3_2:+71459902 | Msa0422300:three_prime_UTR |
| GTATGTTGCCACTTTGGTTG+GGG | 0.493758 | 3_2:+71457782 | Msa0422300:CDS |
| TACGAGCTTGAGCAAATGAC+AGG | 0.497023 | 3_2:+71459670 | Msa0422300:CDS |
| ATATCTACAGTTGCTTGGCT+GGG | 0.500177 | 3_2:+71459001 | Msa0422300:intron |
| ACGTGGAAGTGTTGTTGACT+AGG | 0.505710 | 3_2:+71455889 | Msa0422300:five_prime_UTR |
| TGTGTTGTATGTTGCCACTT+TGG | 0.506197 | 3_2:+71457776 | Msa0422300:CDS |
| GTAATATATCTACAGTTGCT+TGG | 0.514126 | 3_2:+71458996 | Msa0422300:intron |
| GAGAGAAGCTTACAGAATGA+AGG | 0.516329 | 3_2:-71456099 | None:intergenic |
| CACAAAGTGAACCGATTTCG+AGG | 0.518175 | 3_2:+71458508 | Msa0422300:CDS |
| AAAGTATCTTGAAAAGTGTA+GGG | 0.528393 | 3_2:-71460050 | None:intergenic |
| AATGATACCGACTCATGACT+TGG | 0.528462 | 3_2:+71459781 | Msa0422300:exon |
| CTTTGGGCATACCTGATAGT+GGG | 0.533397 | 3_2:+71458478 | Msa0422300:CDS |
| CAGTCATGTTACATGTGGGC+AGG | 0.535899 | 3_2:+71456921 | Msa0422300:CDS |
| TACATACACCTCCTCACTTG+TGG | 0.537541 | 3_2:-71459896 | None:intergenic |
| TATCAGGTATGCCCAAAGCC+TGG | 0.539962 | 3_2:-71458473 | None:intergenic |
| GAGATCAGCGCGTGCAAGGT+CGG | 0.544627 | 3_2:-71459420 | None:intergenic |
| GGTAGATCCTAATGAACCAT+TGG | 0.546664 | 3_2:+71458530 | Msa0422300:CDS |
| TTGATGAACTCAGAGACCTC+TGG | 0.548285 | 3_2:+71457838 | Msa0422300:CDS |
| GATCGTGCACTTGATGAAAA+CGG | 0.548765 | 3_2:+71459463 | Msa0422300:CDS |
| TGATAGAAGAAGGTTGAAGC+TGG | 0.552933 | 3_2:-71456722 | None:intergenic |
| CTTGTATCATCCGTATCCGT+TGG | 0.553758 | 3_2:+71457870 | Msa0422300:CDS |
| AGTTTCAAGTGTGCCGTCAA+AGG | 0.553912 | 3_2:+71456032 | Msa0422300:CDS |
| GAAAGAGATCAGCGCGTGCA+AGG | 0.557629 | 3_2:-71459424 | None:intergenic |
| TATCTACAGTTGCTTGGCTG+GGG | 0.561891 | 3_2:+71459002 | Msa0422300:intron |
| ATGTGGCAGCGATTGCTAAG+AGG | 0.564850 | 3_2:-71457717 | None:intergenic |
| ATGAAGGCAAACAACTGGTA+TGG | 0.568177 | 3_2:-71457754 | None:intergenic |
| TTCAAGAGAAGCTTATCCAA+TGG | 0.569256 | 3_2:-71458546 | None:intergenic |
| GTTCCTCGTACTAAAGGCAG+TGG | 0.569723 | 3_2:+71456670 | Msa0422300:CDS |
| TTTGGGGTGAAGGTCCACTA+GGG | 0.571817 | 3_2:+71457046 | Msa0422300:CDS |
| AATGAAGGAGACAATGGAAA+CGG | 0.572996 | 3_2:-71456084 | None:intergenic |
| ACAAGTGAGGAGGTGTATGT+AGG | 0.576883 | 3_2:+71459898 | Msa0422300:three_prime_UTR |
| TGCTCTCGCAAATCAGCTTG+AGG | 0.581392 | 3_2:+71458418 | Msa0422300:CDS |
| TTCAAGTGTGCCGTCAAAGG+TGG | 0.582518 | 3_2:+71456035 | Msa0422300:CDS |
| CCAAGGTTAAGTTCTGTGCA+TGG | 0.583634 | 3_2:+71459706 | Msa0422300:CDS |
| ATTTCCCTTCATAGTTCACA+AGG | 0.585568 | 3_2:+71456648 | Msa0422300:CDS |
| ATCCAGAGAATTTCGCACAA+TGG | 0.587069 | 3_2:+71458449 | Msa0422300:CDS |
| GAATGTGATATGAGATGTAA+CGG | 0.587155 | 3_2:+71459646 | Msa0422300:CDS |
| CAGGGTGGAATTATTCTCCA+AGG | 0.588521 | 3_2:+71459689 | Msa0422300:CDS |
| ATGGTTAGTGTCCACAAGTG+AGG | 0.590975 | 3_2:+71459885 | Msa0422300:three_prime_UTR |
| AGTTCTTCAGAAGATGATCA+TGG | 0.591447 | 3_2:-71459747 | None:intergenic |
| CCATGCACAGAACTTAACCT+TGG | 0.595101 | 3_2:-71459706 | None:intergenic |
| TGGCAACATACAACACATGA+AGG | 0.596405 | 3_2:-71457770 | None:intergenic |
| AATTAAAGGCGGTCATACAA+AGG | 0.603400 | 3_2:-71460159 | None:intergenic |
| GGAACCTTGTGAACTATGAA+GGG | 0.610171 | 3_2:-71456652 | None:intergenic |
| AATTTGAAAAGAGCCATTGG+TGG | 0.610473 | 3_2:+71456898 | Msa0422300:CDS |
| AAATTCATGACAATATCTCA+TGG | 0.611661 | 3_2:+71458160 | Msa0422300:CDS |
| TTGTACCTGAGTCAGATGAA+TGG | 0.613028 | 3_2:+71456007 | Msa0422300:exon |
| TGTAACATGACTGCCACCAA+TGG | 0.617375 | 3_2:-71456911 | None:intergenic |
| GGTAACAGCTACATAATCTG+TGG | 0.620497 | 3_2:-71456063 | None:intergenic |
| TGAGAAGAATCTATATGGCA+AGG | 0.622563 | 3_2:+71459085 | Msa0422300:CDS |
| AGCAGTTACCCCAACCAAAG+TGG | 0.622897 | 3_2:-71457790 | None:intergenic |
| CTTCTGAAGAACTCAGAATG+TGG | 0.624150 | 3_2:+71459757 | Msa0422300:CDS |
| AAAACTCTAGACCTAAGAAG+TGG | 0.624354 | 3_2:-71460075 | None:intergenic |
| CCAGCAGCACCTACAATCCA+GGG | 0.628273 | 3_2:-71457329 | None:intergenic |
| ACTCGCCATTCATCTGACTC+AGG | 0.631554 | 3_2:-71456012 | None:intergenic |
| ACAAAGTGAACCGATTTCGA+GGG | 0.634894 | 3_2:+71458509 | Msa0422300:CDS |
| GTAACAGCTACATAATCTGT+GGG | 0.637811 | 3_2:-71456062 | None:intergenic |
| TTACAGAATGAAGGAGACAA+TGG | 0.639294 | 3_2:-71456090 | None:intergenic |
| AACAGCAAACCAAACCCTAG+TGG | 0.642601 | 3_2:-71457060 | None:intergenic |
| GGTGGCAGTCATGTTACATG+TGG | 0.644135 | 3_2:+71456916 | Msa0422300:CDS |
| GAACTCAGAGACCTCTGGCG+AGG | 0.644619 | 3_2:+71457843 | Msa0422300:CDS |
| GCTGCCACATGTCAGTTCAG+TGG | 0.646737 | 3_2:+71457730 | Msa0422300:CDS |
| GTTAGTGTCCACAAGTGAGG+AGG | 0.649495 | 3_2:+71459888 | Msa0422300:three_prime_UTR |
| AAAAGGAATGATCTGATCAG+CGG | 0.662063 | 3_2:-71457287 | None:intergenic |
| ATACAAGTATTCCTCGCCAG+AGG | 0.663000 | 3_2:-71457854 | None:intergenic |
| TTTGGGCATACCTGATAGTG+GGG | 0.663068 | 3_2:+71458479 | Msa0422300:CDS |
| CCAAGTACCAAGTCATGAGT+CGG | 0.667900 | 3_2:-71459788 | None:intergenic |
| AAGCTGATTTGCGAGAGCAG+CGG | 0.669302 | 3_2:-71458414 | None:intergenic |
| AAACCACTGCCTTTAGTACG+AGG | 0.671478 | 3_2:-71456673 | None:intergenic |
| CTTCTTCCTGAAGTTCCAGG+AGG | 0.685626 | 3_2:+71459624 | Msa0422300:CDS |
| GTGGCAGTCATGTTACATGT+GGG | 0.712301 | 3_2:+71456917 | Msa0422300:CDS |
| CTAATAATCAGAATTAAAGG+CGG | 0.715963 | 3_2:-71460170 | None:intergenic |
| ACGAGCTTGAGCAAATGACA+GGG | 0.717234 | 3_2:+71459671 | Msa0422300:CDS |
| AGCTTGAGCAAATGACAGGG+TGG | 0.719805 | 3_2:+71459674 | Msa0422300:CDS |
| TGGTCCACTGAACTGACATG+TGG | 0.760232 | 3_2:-71457734 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAACAGT+AGG | - | chr3_2:71458231-71458250 | None:intergenic | 10.0% |
| !! | AATCATCAAAGAAAAAAAAA+AGG | - | chr3_2:71456212-71456231 | None:intergenic | 15.0% |
| !! | TTCTCAAATCAAATTATTAT+CGG | - | chr3_2:71456411-71456430 | None:intergenic | 15.0% |
| !! | TAATCTTATTCATATTGTAT+TGG | + | chr3_2:71456580-71456599 | Msa0422300:intron | 15.0% |
| !!! | ATATTGTAACATATATTTTC+TGG | + | chr3_2:71458053-71458072 | Msa0422300:intron | 15.0% |
| !!! | CAATTTTATTTAGAGATTAA+AGG | - | chr3_2:71458832-71458851 | None:intergenic | 15.0% |
| !!! | AATAAAATTGTTGTTACATT+TGG | + | chr3_2:71458842-71458861 | Msa0422300:intron | 15.0% |
| !!! | AAATTTTGGTTTTACAATTT+TGG | - | chr3_2:71459220-71459239 | None:intergenic | 15.0% |
| !!! | TAAAAAGATTGAGAAAATTT+TGG | - | chr3_2:71459234-71459253 | None:intergenic | 15.0% |
| !! | TTAATTCAAAACAATTTGAT+GGG | + | chr3_2:71459494-71459513 | Msa0422300:intron | 15.0% |
| !!! | ATATCAGTAATTTTCTAAAA+AGG | - | chr3_2:71459845-71459864 | None:intergenic | 15.0% |
| !! | AAAAAAAGGTAAATCAGAAA+GGG | - | chr3_2:71456198-71456217 | None:intergenic | 20.0% |
| !! | AAAAAAAAGGTAAATCAGAA+AGG | - | chr3_2:71456199-71456218 | None:intergenic | 20.0% |
| !!! | CTGTTTCTATAATTAAAAAG+TGG | + | chr3_2:71456284-71456303 | Msa0422300:intron | 20.0% |
| !!! | TCATATTGTATTGGTAATAA+TGG | + | chr3_2:71456589-71456608 | Msa0422300:intron | 20.0% |
| !! | TATAAATAAGTCAGAATAGA+CGG | - | chr3_2:71456960-71456979 | None:intergenic | 20.0% |
| !! | AAAGAATAAGTGGAATTAAA+AGG | - | chr3_2:71457307-71457326 | None:intergenic | 20.0% |
| !! | AGCTTCATTAGAAATAAATA+CGG | - | chr3_2:71457663-71457682 | None:intergenic | 20.0% |
| !!! | ACTTTTACTCTTATGTAAAT+AGG | + | chr3_2:71457918-71457937 | Msa0422300:intron | 20.0% |
| !!! | CTTTTACTCTTATGTAAATA+GGG | + | chr3_2:71457919-71457938 | Msa0422300:intron | 20.0% |
| !! | GAAACAGATCATAATATAAA+AGG | + | chr3_2:71457941-71457960 | Msa0422300:intron | 20.0% |
| !! | TTTGCATTACAATGAAATAA+CGG | + | chr3_2:71458254-71458273 | Msa0422300:intron | 20.0% |
| !!! | ATAATGGTTTTGCTTATTTA+AGG | + | chr3_2:71458662-71458681 | Msa0422300:intron | 20.0% |
| !!! | TAATGGTTTTGCTTATTTAA+GGG | + | chr3_2:71458663-71458682 | Msa0422300:intron | 20.0% |
| !! | GTTTGACAATGTTTAAATAA+AGG | + | chr3_2:71458743-71458762 | Msa0422300:intron | 20.0% |
| !! | TTACTTATACTTTGATGTTT+AGG | - | chr3_2:71458918-71458937 | None:intergenic | 20.0% |
| !!! | TTTTGAACGAAAAAAATACA+AGG | - | chr3_2:71458958-71458977 | None:intergenic | 20.0% |
| !! | GTAGATATATTACAACAATA+AGG | - | chr3_2:71458989-71459008 | None:intergenic | 20.0% |
| !!! | TTGTTACAATGTAATTTTAC+AGG | + | chr3_2:71459341-71459360 | Msa0422300:intron | 20.0% |
| !!! | CATCAAATTGTTTTGAATTA+AGG | - | chr3_2:71459495-71459514 | None:intergenic | 20.0% |
| !! | CTTAATTCAAAACAATTTGA+TGG | + | chr3_2:71459493-71459512 | Msa0422300:intron | 20.0% |
| !!! | CTTTTTTCTTATTCCATTTA+TGG | + | chr3_2:71459866-71459885 | Msa0422300:three_prime_UTR | 20.0% |
| ! | GTTAGATTAGAAAGTGAATT+AGG | - | chr3_2:71456137-71456156 | None:intergenic | 25.0% |
| ! | AAAAAAGGTAAATCAGAAAG+GGG | - | chr3_2:71456197-71456216 | None:intergenic | 25.0% |
| ! | TGAGTTAAACTCTGTATAAA+CGG | + | chr3_2:71456309-71456328 | Msa0422300:intron | 25.0% |
| ! | AAGTTCAACAATGAGATTAA+GGG | - | chr3_2:71456525-71456544 | None:intergenic | 25.0% |
| !! | ATTGTATTGGTAATAATGGT+TGG | + | chr3_2:71456593-71456612 | Msa0422300:intron | 25.0% |
| !!! | AATTTCTTTACTGCTATTTC+AGG | + | chr3_2:71457255-71457274 | Msa0422300:intron | 25.0% |
| ! | CAAAAAAACATCAAAGTACA+CGG | - | chr3_2:71457445-71457464 | None:intergenic | 25.0% |
| ! | AAAAAAAAATGCAACTCTAC+AGG | - | chr3_2:71457468-71457487 | None:intergenic | 25.0% |
| !! | ATATCCAGCAAAATTTTGAA+AGG | - | chr3_2:71457520-71457539 | None:intergenic | 25.0% |
| !! | AGTATGAAAAAGTATACCAA+CGG | - | chr3_2:71457889-71457908 | None:intergenic | 25.0% |
| ! | AGTATCTTAGATTATCTCTT+GGG | - | chr3_2:71457986-71458005 | None:intergenic | 25.0% |
| ! | AAATTCATGACAATATCTCA+TGG | + | chr3_2:71458160-71458179 | Msa0422300:CDS | 25.0% |
| ! | CAAAACTAAAAGAAGAAATC+TGG | - | chr3_2:71458199-71458218 | None:intergenic | 25.0% |
| !!! | CAGATTTCTTCTTTTAGTTT+TGG | + | chr3_2:71458197-71458216 | Msa0422300:CDS | 25.0% |
| !! | CTTATGTTGTCTTCTTTTAA+AGG | + | chr3_2:71458347-71458366 | Msa0422300:intron | 25.0% |
| ! | GCATACATTTATGAGAATAA+TGG | + | chr3_2:71458646-71458665 | Msa0422300:intron | 25.0% |
| !!! | TTTTGAAATCTTATTCCACA+GGG | + | chr3_2:71458876-71458895 | Msa0422300:intron | 25.0% |
| !!! | TGGTTTTACAATTTTGGTAA+TGG | - | chr3_2:71459214-71459233 | None:intergenic | 25.0% |
| !!! | ATTTTCTAAAAAGGTAACTC+TGG | - | chr3_2:71459836-71459855 | None:intergenic | 25.0% |
| !! | AAAGTATCTTGAAAAGTGTA+GGG | - | chr3_2:71460053-71460072 | None:intergenic | 25.0% |
| !! | TAAAGTATCTTGAAAAGTGT+AGG | - | chr3_2:71460054-71460073 | None:intergenic | 25.0% |
| GTTAAGCTCAAAATTCATAG+AGG | - | chr3_2:71456175-71456194 | None:intergenic | 30.0% | |
| ACTCTGTATAAACGGAAAAT+AGG | + | chr3_2:71456317-71456336 | Msa0422300:intron | 30.0% | |
| AAATCAAATTATTATCGGCG+TGG | - | chr3_2:71456406-71456425 | None:intergenic | 30.0% | |
| AATAATTGAACATAGCCAAG+TGG | + | chr3_2:71456436-71456455 | Msa0422300:intron | 30.0% | |
| AGTTCAACAATGAGATTAAG+GGG | - | chr3_2:71456524-71456543 | None:intergenic | 30.0% | |
| CAAGTTCAACAATGAGATTA+AGG | - | chr3_2:71456526-71456545 | None:intergenic | 30.0% | |
| CAACCTTCTTCTATCAATTA+TGG | + | chr3_2:71456729-71456748 | Msa0422300:CDS | 30.0% | |
| CTACCATAATTGATAGAAGA+AGG | - | chr3_2:71456735-71456754 | None:intergenic | 30.0% | |
| TCAAATTTGAAAAGAGCCAT+TGG | + | chr3_2:71456895-71456914 | Msa0422300:CDS | 30.0% | |
| TTCGTGTTTATTTCCAGTTT+GGG | + | chr3_2:71457029-71457048 | Msa0422300:intron | 30.0% | |
| GGTGAGTACAAAAATAAAAC+TGG | - | chr3_2:71457176-71457195 | None:intergenic | 30.0% | |
| GTAACACAAACAAAAGCAAA+AGG | - | chr3_2:71457381-71457400 | None:intergenic | 30.0% | |
| TTAGTATTTGCAACATCTTG+TGG | + | chr3_2:71457595-71457614 | Msa0422300:intron | 30.0% | |
| TTAGAAATAAATACGGCAAC+AGG | - | chr3_2:71457656-71457675 | None:intergenic | 30.0% | |
| ! | AAAAAGTATACCAACGGATA+CGG | - | chr3_2:71457883-71457902 | None:intergenic | 30.0% |
| GAGTATCTTAGATTATCTCT+TGG | - | chr3_2:71457987-71458006 | None:intergenic | 30.0% | |
| GAGCAAAGGTTAAATTATTG+AGG | - | chr3_2:71458096-71458115 | None:intergenic | 30.0% | |
| ATTTGTTCTGTCAGTTGTAT+GGG | + | chr3_2:71458116-71458135 | Msa0422300:intron | 30.0% | |
| TTCTCTTGAACAAGAAATTC+AGG | + | chr3_2:71458559-71458578 | Msa0422300:CDS | 30.0% | |
| ! | AAATTCAGGCAGTCTTTTAT+GGG | + | chr3_2:71458573-71458592 | Msa0422300:CDS | 30.0% |
| CAACATATTGAGTCAACAAA+AGG | - | chr3_2:71458620-71458639 | None:intergenic | 30.0% | |
| !!! | CTTTTGTTGACTCAATATGT+TGG | + | chr3_2:71458618-71458637 | Msa0422300:intron | 30.0% |
| AGTGATTAAATGTCAGTGTA+AGG | - | chr3_2:71458714-71458733 | None:intergenic | 30.0% | |
| ! | TATGTAACTCTTTGTTGTGT+TGG | + | chr3_2:71458769-71458788 | Msa0422300:intron | 30.0% |
| !!! | CTTTTGAAATCTTATTCCAC+AGG | + | chr3_2:71458875-71458894 | Msa0422300:intron | 30.0% |
| GTAATATATCTACAGTTGCT+TGG | + | chr3_2:71458996-71459015 | Msa0422300:intron | 30.0% | |
| ! | AAGTTTTTCTTCCAACTGTA+GGG | + | chr3_2:71459301-71459320 | Msa0422300:intron | 30.0% |
| !! | ACCAGGCTAATTTTAATCAA+GGG | - | chr3_2:71459523-71459542 | None:intergenic | 30.0% |
| !! | AACCAGGCTAATTTTAATCA+AGG | - | chr3_2:71459524-71459543 | None:intergenic | 30.0% |
| GAATGTGATATGAGATGTAA+CGG | + | chr3_2:71459646-71459665 | Msa0422300:CDS | 30.0% | |
| TTGTTAACATCTGTATAGTC+AGG | + | chr3_2:71459963-71459982 | Msa0422300:three_prime_UTR | 30.0% | |
| AGATACTTTAACCACTTCTT+AGG | + | chr3_2:71460064-71460083 | Msa0422300:three_prime_UTR | 30.0% | |
| !!! | AGAGTTTTAAGCATACATAC+AGG | + | chr3_2:71460090-71460109 | Msa0422300:three_prime_UTR | 30.0% |
| AGATTCAGTTTCTGTTCATC+AGG | - | chr3_2:71455977-71455996 | None:intergenic | 35.0% | |
| TGATGAACAGAAACTGAATC+TGG | + | chr3_2:71455976-71455995 | Msa0422300:five_prime_UTR | 35.0% | |
| GTAACAGCTACATAATCTGT+GGG | - | chr3_2:71456065-71456084 | None:intergenic | 35.0% | |
| AATGAAGGAGACAATGGAAA+CGG | - | chr3_2:71456087-71456106 | None:intergenic | 35.0% | |
| TTACAGAATGAAGGAGACAA+TGG | - | chr3_2:71456093-71456112 | None:intergenic | 35.0% | |
| CTTCAAAACAATTACCCAAG+TGG | + | chr3_2:71456465-71456484 | Msa0422300:intron | 35.0% | |
| AACTTATGACACATCCACTT+GGG | - | chr3_2:71456482-71456501 | None:intergenic | 35.0% | |
| GTTCAACAATGAGATTAAGG+GGG | - | chr3_2:71456523-71456542 | None:intergenic | 35.0% | |
| TATCTTTCAGGCTTCTCATA+TGG | + | chr3_2:71456620-71456639 | Msa0422300:intron | 35.0% | |
| ATTTCCCTTCATAGTTCACA+AGG | + | chr3_2:71456648-71456667 | Msa0422300:CDS | 35.0% | |
| GCTAAGCATGATAACAAACA+GGG | - | chr3_2:71456836-71456855 | None:intergenic | 35.0% | |
| AGCTAAGCATGATAACAAAC+AGG | - | chr3_2:71456837-71456856 | None:intergenic | 35.0% | |
| AATTTGAAAAGAGCCATTGG+TGG | + | chr3_2:71456898-71456917 | Msa0422300:CDS | 35.0% | |
| CTTCGTGTTTATTTCCAGTT+TGG | + | chr3_2:71457028-71457047 | Msa0422300:intron | 35.0% | |
| TCGTGTTTATTTCCAGTTTG+GGG | + | chr3_2:71457030-71457049 | Msa0422300:intron | 35.0% | |
| AGTGACTACTTGATATTCAG+TGG | + | chr3_2:71457134-71457153 | Msa0422300:intron | 35.0% | |
| CTACTTGATATTCAGTGGTT+AGG | + | chr3_2:71457139-71457158 | Msa0422300:intron | 35.0% | |
| TTAGCACTTGATAAGCAGTA+GGG | - | chr3_2:71457197-71457216 | None:intergenic | 35.0% | |
| TTTAGCACTTGATAAGCAGT+AGG | - | chr3_2:71457198-71457217 | None:intergenic | 35.0% | |
| !! | TTCTTTACTGCTATTTCAGG+AGG | + | chr3_2:71457258-71457277 | Msa0422300:intron | 35.0% |
| AAAAGGAATGATCTGATCAG+CGG | - | chr3_2:71457290-71457309 | None:intergenic | 35.0% | |
| ! | GTGTCCTTTCAAAATTTTGC+TGG | + | chr3_2:71457513-71457532 | Msa0422300:intron | 35.0% |
| GGCTTCTTTATATGGATAAC+TGG | - | chr3_2:71457699-71457718 | None:intergenic | 35.0% | |
| TGCTAAGAGGCTTCTTTATA+TGG | - | chr3_2:71457707-71457726 | None:intergenic | 35.0% | |
| ! | ATTTTCTGGATATCTCAGCT+TGG | + | chr3_2:71458067-71458086 | Msa0422300:intron | 35.0% |
| CATTTGTTCTGTCAGTTGTA+TGG | + | chr3_2:71458115-71458134 | Msa0422300:intron | 35.0% | |
| AACGGACATTGTTAGTTGAT+TGG | + | chr3_2:71458272-71458291 | Msa0422300:intron | 35.0% | |
| AGCTTATCCAATGGTTCATT+AGG | - | chr3_2:71458540-71458559 | None:intergenic | 35.0% | |
| TTCAAGAGAAGCTTATCCAA+TGG | - | chr3_2:71458549-71458568 | None:intergenic | 35.0% | |
| ! | GAAATTCAGGCAGTCTTTTA+TGG | + | chr3_2:71458572-71458591 | Msa0422300:CDS | 35.0% |
| !!! | CTTTTATGGGATTTGCTGAT+AGG | + | chr3_2:71458586-71458605 | Msa0422300:CDS | 35.0% |
| TTGACTCAATATGTTGGCAT+TGG | + | chr3_2:71458624-71458643 | Msa0422300:intron | 35.0% | |
| ! | TTGTGATTGGTTGTTTACTC+TGG | + | chr3_2:71458796-71458815 | Msa0422300:intron | 35.0% |
| TGAGAAGAATCTATATGGCA+AGG | + | chr3_2:71459085-71459104 | Msa0422300:CDS | 35.0% | |
| ! | ATTGAGAAGTACATAGTTGC+AGG | + | chr3_2:71459114-71459133 | Msa0422300:CDS | 35.0% |
| AACAAGGGAAAGGATGAAAA+AGG | - | chr3_2:71459167-71459186 | None:intergenic | 35.0% | |
| ! | CAAGTTTTTCTTCCAACTGT+AGG | + | chr3_2:71459300-71459319 | Msa0422300:intron | 35.0% |
| ! | TAATTTTACAGGTGCAGCTA+TGG | + | chr3_2:71459352-71459371 | Msa0422300:intron | 35.0% |
| TCCCTTGATTAAAATTAGCC+TGG | + | chr3_2:71459519-71459538 | Msa0422300:intron | 35.0% | |
| ! | GATTAAAATTAGCCTGGTTG+TGG | + | chr3_2:71459525-71459544 | Msa0422300:intron | 35.0% |
| AAAACTATACATCCACAACC+AGG | - | chr3_2:71459540-71459559 | None:intergenic | 35.0% | |
| ! | TAATCTTTTGCCAAGTTCTG+GGG | - | chr3_2:71459592-71459611 | None:intergenic | 35.0% |
| ! | GTAATCTTTTGCCAAGTTCT+GGG | - | chr3_2:71459593-71459612 | None:intergenic | 35.0% |
| ! | AGTAATCTTTTGCCAAGTTC+TGG | - | chr3_2:71459594-71459613 | None:intergenic | 35.0% |
| AGAACTTGGCAAAAGATTAC+TGG | + | chr3_2:71459593-71459612 | Msa0422300:intron | 35.0% | |
| AGAAGATGATCATGGTGAAA+AGG | - | chr3_2:71459742-71459761 | None:intergenic | 35.0% | |
| AGTTCTTCAGAAGATGATCA+TGG | - | chr3_2:71459750-71459769 | None:intergenic | 35.0% | |
| CTAAAAAGGTAACTCTGGTT+TGG | - | chr3_2:71459831-71459850 | None:intergenic | 35.0% | |
| TTGTGGACACTAACCATAAA+TGG | - | chr3_2:71459882-71459901 | None:intergenic | 35.0% | |
| ATGTAGGAAGGAAGACAAAA+AGG | + | chr3_2:71459914-71459933 | Msa0422300:three_prime_UTR | 35.0% | |
| TGTAGGAAGGAAGACAAAAA+GGG | + | chr3_2:71459915-71459934 | Msa0422300:three_prime_UTR | 35.0% | |
| GCTAGTATCATGTACATCTT+GGG | + | chr3_2:71459985-71460004 | Msa0422300:three_prime_UTR | 35.0% | |
| AAAACTCTAGACCTAAGAAG+TGG | - | chr3_2:71460078-71460097 | None:intergenic | 35.0% | |
| AATTAAAGGCGGTCATACAA+AGG | - | chr3_2:71460162-71460181 | None:intergenic | 35.0% | |
| ! | GTGTGAAACAAAAAAGCACG+TGG | + | chr3_2:71455872-71455891 | Msa0422300:five_prime_UTR | 40.0% |
| TTGTACCTGAGTCAGATGAA+TGG | + | chr3_2:71456007-71456026 | Msa0422300:exon | 40.0% | |
| GGTAACAGCTACATAATCTG+TGG | - | chr3_2:71456066-71456085 | None:intergenic | 40.0% | |
| GAGAGAAGCTTACAGAATGA+AGG | - | chr3_2:71456102-71456121 | None:intergenic | 40.0% | |
| TGTGTCTGGTGTACATAACT+AGG | - | chr3_2:71456374-71456393 | None:intergenic | 40.0% | |
| !!! | GTTTTGAAGAGCTTACCACT+TGG | - | chr3_2:71456454-71456473 | None:intergenic | 40.0% |
| CAACTTATGACACATCCACT+TGG | - | chr3_2:71456483-71456502 | None:intergenic | 40.0% | |
| ACAATGAGATTAAGGGGGTT+TGG | - | chr3_2:71456518-71456537 | None:intergenic | 40.0% | |
| !! | ATGGTTGGCTTCTATCTTTC+AGG | + | chr3_2:71456608-71456627 | Msa0422300:intron | 40.0% |
| GGAACCTTGTGAACTATGAA+GGG | - | chr3_2:71456655-71456674 | None:intergenic | 40.0% | |
| AGGAACCTTGTGAACTATGA+AGG | - | chr3_2:71456656-71456675 | None:intergenic | 40.0% | |
| CTGGCAACAACTTGAATTAC+AGG | - | chr3_2:71456706-71456725 | None:intergenic | 40.0% | |
| TGATAGAAGAAGGTTGAAGC+TGG | - | chr3_2:71456725-71456744 | None:intergenic | 40.0% | |
| TCAGAATAGACGGCATAAGA+AGG | - | chr3_2:71456950-71456969 | None:intergenic | 40.0% | |
| ! | TTATTTCCAGTTTGGGGTGA+AGG | + | chr3_2:71457036-71457055 | Msa0422300:intron | 40.0% |
| ! | TTCCACTTATTCTTTTGCCC+TGG | + | chr3_2:71457312-71457331 | Msa0422300:CDS | 40.0% |
| ATCCAGGGCAAAAGAATAAG+TGG | - | chr3_2:71457317-71457336 | None:intergenic | 40.0% | |
| ! | ATTCTTTTGCCCTGGATTGT+AGG | + | chr3_2:71457320-71457339 | Msa0422300:CDS | 40.0% |
| AAATACGGCAACAGGCAAAA+GGG | - | chr3_2:71457648-71457667 | None:intergenic | 40.0% | |
| TAAATACGGCAACAGGCAAA+AGG | - | chr3_2:71457649-71457668 | None:intergenic | 40.0% | |
| ATGAAGGCAAACAACTGGTA+TGG | - | chr3_2:71457757-71457776 | None:intergenic | 40.0% | |
| AACACATGAAGGCAAACAAC+TGG | - | chr3_2:71457762-71457781 | None:intergenic | 40.0% | |
| TGGCAACATACAACACATGA+AGG | - | chr3_2:71457773-71457792 | None:intergenic | 40.0% | |
| ! | TGTGTTGTATGTTGCCACTT+TGG | + | chr3_2:71457776-71457795 | Msa0422300:CDS | 40.0% |
| !! | TTGTATGTTGCCACTTTGGT+TGG | + | chr3_2:71457780-71457799 | Msa0422300:CDS | 40.0% |
| !! | TGTATGTTGCCACTTTGGTT+GGG | + | chr3_2:71457781-71457800 | Msa0422300:CDS | 40.0% |
| CTGTGCATCATATAGAGTTC+AGG | + | chr3_2:71457814-71457833 | Msa0422300:CDS | 40.0% | |
| CTGACAGAACAAATGAGCAA+AGG | - | chr3_2:71458110-71458129 | None:intergenic | 40.0% | |
| AAAGGCTAGCATACTTGTGT+TGG | + | chr3_2:71458365-71458384 | Msa0422300:intron | 40.0% | |
| ATCCAGAGAATTTCGCACAA+TGG | + | chr3_2:71458449-71458468 | Msa0422300:CDS | 40.0% | |
| TCCAGAGAATTTCGCACAAT+GGG | + | chr3_2:71458450-71458469 | Msa0422300:CDS | 40.0% | |
| TGTGATAATACCCCACTATC+AGG | - | chr3_2:71458492-71458511 | None:intergenic | 40.0% | |
| ! | ACAAAGTGAACCGATTTCGA+GGG | + | chr3_2:71458509-71458528 | Msa0422300:CDS | 40.0% |
| TTAGGATCTACCCTCGAAAT+CGG | - | chr3_2:71458522-71458541 | None:intergenic | 40.0% | |
| GGTAGATCCTAATGAACCAT+TGG | + | chr3_2:71458530-71458549 | Msa0422300:CDS | 40.0% | |
| AATCTTATTCCACAGGGTCT+TGG | + | chr3_2:71458882-71458901 | Msa0422300:intron | 40.0% | |
| TATATCTACAGTTGCTTGGC+TGG | + | chr3_2:71459000-71459019 | Msa0422300:intron | 40.0% | |
| ATATCTACAGTTGCTTGGCT+GGG | + | chr3_2:71459001-71459020 | Msa0422300:intron | 40.0% | |
| CTGCGTGAGAAGAATCTATA+TGG | + | chr3_2:71459080-71459099 | Msa0422300:CDS | 40.0% | |
| ! | AGAAGTACATAGTTGCAGGT+TGG | + | chr3_2:71459118-71459137 | Msa0422300:intron | 40.0% |
| AGTCTCATAGAGGAGAACAA+GGG | - | chr3_2:71459182-71459201 | None:intergenic | 40.0% | |
| AAGTCTCATAGAGGAGAACA+AGG | - | chr3_2:71459183-71459202 | None:intergenic | 40.0% | |
| GCAAAAGCAAAGTCTCATAG+AGG | - | chr3_2:71459192-71459211 | None:intergenic | 40.0% | |
| CATCTCTCATAGAAGCAAAC+AGG | + | chr3_2:71459382-71459401 | Msa0422300:CDS | 40.0% | |
| GATCGTGCACTTGATGAAAA+CGG | + | chr3_2:71459463-71459482 | Msa0422300:CDS | 40.0% | |
| AATCTTCTTCCTGAAGTTCC+AGG | + | chr3_2:71459621-71459640 | Msa0422300:CDS | 40.0% | |
| ATCTCATATCACATTCCTCC+TGG | - | chr3_2:71459642-71459661 | None:intergenic | 40.0% | |
| ! | CTTCTGAAGAACTCAGAATG+TGG | + | chr3_2:71459757-71459776 | Msa0422300:CDS | 40.0% |
| !! | AATGATACCGACTCATGACT+TGG | + | chr3_2:71459781-71459800 | Msa0422300:exon | 40.0% |
| GGCTAGTATCATGTACATCT+TGG | + | chr3_2:71459984-71460003 | Msa0422300:three_prime_UTR | 40.0% | |
| !! | ACGTGGAAGTGTTGTTGACT+AGG | + | chr3_2:71455889-71455908 | Msa0422300:five_prime_UTR | 45.0% |
| ! | AGTTTCAAGTGTGCCGTCAA+AGG | + | chr3_2:71456032-71456051 | Msa0422300:CDS | 45.0% |
| CACAAGGTTCCTCGTACTAA+AGG | + | chr3_2:71456664-71456683 | Msa0422300:CDS | 45.0% | |
| AAACCACTGCCTTTAGTACG+AGG | - | chr3_2:71456676-71456695 | None:intergenic | 45.0% | |
| GTACTAAAGGCAGTGGTTTC+TGG | + | chr3_2:71456677-71456696 | Msa0422300:CDS | 45.0% | |
| TGTAACATGACTGCCACCAA+TGG | - | chr3_2:71456914-71456933 | None:intergenic | 45.0% | |
| GTGGCAGTCATGTTACATGT+GGG | + | chr3_2:71456917-71456936 | Msa0422300:CDS | 45.0% | |
| AACAGCAAACCAAACCCTAG+TGG | - | chr3_2:71457063-71457082 | None:intergenic | 45.0% | |
| TTCAGCGCACAATTGACAAG+TGG | - | chr3_2:71457232-71457251 | None:intergenic | 45.0% | |
| AATACGGCAACAGGCAAAAG+GGG | - | chr3_2:71457647-71457666 | None:intergenic | 45.0% | |
| !! | GTATGTTGCCACTTTGGTTG+GGG | + | chr3_2:71457782-71457801 | Msa0422300:CDS | 45.0% |
| TTGATGAACTCAGAGACCTC+TGG | + | chr3_2:71457838-71457857 | Msa0422300:CDS | 45.0% | |
| ATACAAGTATTCCTCGCCAG+AGG | - | chr3_2:71457857-71457876 | None:intergenic | 45.0% | |
| CTTGTATCATCCGTATCCGT+TGG | + | chr3_2:71457870-71457889 | Msa0422300:CDS | 45.0% | |
| TTCTGGATATCTCAGCTTGG+TGG | + | chr3_2:71458070-71458089 | Msa0422300:intron | 45.0% | |
| CTTTGGGCATACCTGATAGT+GGG | + | chr3_2:71458478-71458497 | Msa0422300:CDS | 45.0% | |
| ! | TTTGGGCATACCTGATAGTG+GGG | + | chr3_2:71458479-71458498 | Msa0422300:CDS | 45.0% |
| ! | CACAAAGTGAACCGATTTCG+AGG | + | chr3_2:71458508-71458527 | Msa0422300:CDS | 45.0% |
| ! | TTGTGTTGGCGAGTTGTGAT+TGG | + | chr3_2:71458783-71458802 | Msa0422300:intron | 45.0% |
| TATCTACAGTTGCTTGGCTG+GGG | + | chr3_2:71459002-71459021 | Msa0422300:intron | 45.0% | |
| TCTTCTCACGCAGTCATGTT+CGG | - | chr3_2:71459073-71459092 | None:intergenic | 45.0% | |
| !! | CATAGTTGCAGGTTGGTACT+TGG | + | chr3_2:71459125-71459144 | Msa0422300:intron | 45.0% |
| CATAGAGGAGAACAAGGGAA+AGG | - | chr3_2:71459177-71459196 | None:intergenic | 45.0% | |
| TACGAGCTTGAGCAAATGAC+AGG | + | chr3_2:71459670-71459689 | Msa0422300:CDS | 45.0% | |
| ACGAGCTTGAGCAAATGACA+GGG | + | chr3_2:71459671-71459690 | Msa0422300:CDS | 45.0% | |
| CAGGGTGGAATTATTCTCCA+AGG | + | chr3_2:71459689-71459708 | Msa0422300:CDS | 45.0% | |
| CCATGCACAGAACTTAACCT+TGG | - | chr3_2:71459709-71459728 | None:intergenic | 45.0% | |
| CCAAGGTTAAGTTCTGTGCA+TGG | + | chr3_2:71459706-71459725 | Msa0422300:CDS | 45.0% | |
| CCAAGTACCAAGTCATGAGT+CGG | - | chr3_2:71459791-71459810 | None:intergenic | 45.0% | |
| ATGGTTAGTGTCCACAAGTG+AGG | + | chr3_2:71459885-71459904 | Msa0422300:three_prime_UTR | 45.0% | |
| TACATACACCTCCTCACTTG+TGG | - | chr3_2:71459899-71459918 | None:intergenic | 45.0% | |
| ! | ACAAGTGAGGAGGTGTATGT+AGG | + | chr3_2:71459898-71459917 | Msa0422300:three_prime_UTR | 45.0% |
| GTCATACAAAGGACGTCGTT+AGG | - | chr3_2:71460151-71460170 | None:intergenic | 45.0% | |
| ACTCGCCATTCATCTGACTC+AGG | - | chr3_2:71456015-71456034 | None:intergenic | 50.0% | |
| TTCAAGTGTGCCGTCAAAGG+TGG | + | chr3_2:71456035-71456054 | Msa0422300:CDS | 50.0% | |
| ! | CGTGGTGTCAGTATTGTGTC+TGG | - | chr3_2:71456388-71456407 | None:intergenic | 50.0% |
| GTTCCTCGTACTAAAGGCAG+TGG | + | chr3_2:71456670-71456689 | Msa0422300:CDS | 50.0% | |
| GGTGGCAGTCATGTTACATG+TGG | + | chr3_2:71456916-71456935 | Msa0422300:CDS | 50.0% | |
| CAGTCATGTTACATGTGGGC+AGG | + | chr3_2:71456921-71456940 | Msa0422300:CDS | 50.0% | |
| ! | TTTGGGGTGAAGGTCCACTA+GGG | + | chr3_2:71457046-71457065 | Msa0422300:CDS | 50.0% |
| GCGCACAATTGACAAGTGGA+CGG | - | chr3_2:71457228-71457247 | None:intergenic | 50.0% | |
| ATACGGCAACAGGCAAAAGG+GGG | - | chr3_2:71457646-71457665 | None:intergenic | 50.0% | |
| ATGTGGCAGCGATTGCTAAG+AGG | - | chr3_2:71457720-71457739 | None:intergenic | 50.0% | |
| TGGTCCACTGAACTGACATG+TGG | - | chr3_2:71457737-71457756 | None:intergenic | 50.0% | |
| AGCAGTTACCCCAACCAAAG+TGG | - | chr3_2:71457793-71457812 | None:intergenic | 50.0% | |
| !! | AAGCTGATTTGCGAGAGCAG+CGG | - | chr3_2:71458417-71458436 | None:intergenic | 50.0% |
| TGCTCTCGCAAATCAGCTTG+AGG | + | chr3_2:71458418-71458437 | Msa0422300:CDS | 50.0% | |
| GCCCATTGTGCGAAATTCTC+TGG | - | chr3_2:71458454-71458473 | None:intergenic | 50.0% | |
| AGAATTTCGCACAATGGGCC+AGG | + | chr3_2:71458455-71458474 | Msa0422300:CDS | 50.0% | |
| TATCAGGTATGCCCAAAGCC+TGG | - | chr3_2:71458476-71458495 | None:intergenic | 50.0% | |
| ! | GCTTTGGGCATACCTGATAG+TGG | + | chr3_2:71458477-71458496 | Msa0422300:CDS | 50.0% |
| CCAAAACATCCAAGACCCTG+TGG | - | chr3_2:71458894-71458913 | None:intergenic | 50.0% | |
| ! | CCACAGGGTCTTGGATGTTT+TGG | + | chr3_2:71458891-71458910 | Msa0422300:intron | 50.0% |
| TCTTCCAACTGTAGGGTGCA+TGG | + | chr3_2:71459308-71459327 | Msa0422300:intron | 50.0% | |
| AACACCATGCACCCTACAGT+TGG | - | chr3_2:71459315-71459334 | None:intergenic | 50.0% | |
| !!! | TCTTTTGCCAAGTTCTGGGG+AGG | - | chr3_2:71459589-71459608 | None:intergenic | 50.0% |
| CTTCTTCCTGAAGTTCCAGG+AGG | + | chr3_2:71459624-71459643 | Msa0422300:CDS | 50.0% | |
| CACATTCCTCCTGGAACTTC+AGG | - | chr3_2:71459633-71459652 | None:intergenic | 50.0% | |
| AGCTTGAGCAAATGACAGGG+TGG | + | chr3_2:71459674-71459693 | Msa0422300:CDS | 50.0% | |
| !! | CCGACTCATGACTTGGTACT+TGG | + | chr3_2:71459788-71459807 | Msa0422300:exon | 50.0% |
| GTTAGTGTCCACAAGTGAGG+AGG | + | chr3_2:71459888-71459907 | Msa0422300:three_prime_UTR | 50.0% | |
| ! | GTGAGGAGGTGTATGTAGGA+AGG | + | chr3_2:71459902-71459921 | Msa0422300:three_prime_UTR | 50.0% |
| TGTGGGACAGCCACCTTTGA+CGG | - | chr3_2:71456048-71456067 | None:intergenic | 55.0% | |
| AGTGGACCTTCACCCCAAAC+TGG | - | chr3_2:71457045-71457064 | None:intergenic | 55.0% | |
| ! | GTTTGGGGTGAAGGTCCACT+AGG | + | chr3_2:71457045-71457064 | Msa0422300:intron | 55.0% |
| GGTGAAGGTCCACTAGGGTT+TGG | + | chr3_2:71457051-71457070 | Msa0422300:CDS | 55.0% | |
| CCAGCAGCACCTACAATCCA+GGG | - | chr3_2:71457332-71457351 | None:intergenic | 55.0% | |
| ACCAGCAGCACCTACAATCC+AGG | - | chr3_2:71457333-71457352 | None:intergenic | 55.0% | |
| GCTGCCACATGTCAGTTCAG+TGG | + | chr3_2:71457730-71457749 | Msa0422300:CDS | 55.0% | |
| GAAAGAGATCAGCGCGTGCA+AGG | - | chr3_2:71459427-71459446 | None:intergenic | 55.0% | |
| !! | CCAAGTTCTGGGGAGGTGAA+TGG | - | chr3_2:71459582-71459601 | None:intergenic | 55.0% |
| CCATTCACCTCCCCAGAACT+TGG | + | chr3_2:71459579-71459598 | Msa0422300:intron | 55.0% | |
| ! | CCCTGGATTGTAGGTGCTGC+TGG | + | chr3_2:71457329-71457348 | Msa0422300:CDS | 60.0% |
| GAACTCAGAGACCTCTGGCG+AGG | + | chr3_2:71457843-71457862 | Msa0422300:CDS | 60.0% | |
| TCGCACAATGGGCCAGGCTT+TGG | + | chr3_2:71458461-71458480 | Msa0422300:CDS | 60.0% | |
| CGCACAATGGGCCAGGCTTT+GGG | + | chr3_2:71458462-71458481 | Msa0422300:CDS | 60.0% | |
| GAGATCAGCGCGTGCAAGGT+CGG | - | chr3_2:71459423-71459442 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 71455849 | 71460188 | 71455849 | ID=Msa0422300;Name=Msa0422300 |
| chr3_2 | mRNA | 71455849 | 71460188 | 71455849 | ID=Msa0422300-mRNA-1;Parent=Msa0422300;Name=Msa0422300-mRNA-1;_AED=0.11;_eAED=0.11;_QI=177|1|1|1|1|1|11|390|465 |
| chr3_2 | exon | 71455849 | 71456108 | 71455849 | ID=Msa0422300-mRNA-1:exon:17464;Parent=Msa0422300-mRNA-1 |
| chr3_2 | exon | 71456630 | 71456750 | 71456630 | ID=Msa0422300-mRNA-1:exon:17465;Parent=Msa0422300-mRNA-1 |
| chr3_2 | exon | 71456879 | 71456942 | 71456879 | ID=Msa0422300-mRNA-1:exon:17466;Parent=Msa0422300-mRNA-1 |
| chr3_2 | exon | 71457046 | 71457130 | 71457046 | ID=Msa0422300-mRNA-1:exon:17467;Parent=Msa0422300-mRNA-1 |
| chr3_2 | exon | 71457277 | 71457350 | 71457277 | ID=Msa0422300-mRNA-1:exon:17468;Parent=Msa0422300-mRNA-1 |
| chr3_2 | exon | 71457700 | 71457891 | 71457700 | ID=Msa0422300-mRNA-1:exon:17469;Parent=Msa0422300-mRNA-1 |
| chr3_2 | exon | 71458130 | 71458218 | 71458130 | ID=Msa0422300-mRNA-1:exon:17470;Parent=Msa0422300-mRNA-1 |
| chr3_2 | exon | 71458369 | 71458607 | 71458369 | ID=Msa0422300-mRNA-1:exon:17471;Parent=Msa0422300-mRNA-1 |
| chr3_2 | exon | 71459011 | 71459135 | 71459011 | ID=Msa0422300-mRNA-1:exon:17472;Parent=Msa0422300-mRNA-1 |
| chr3_2 | exon | 71459363 | 71459484 | 71459363 | ID=Msa0422300-mRNA-1:exon:17473;Parent=Msa0422300-mRNA-1 |
| chr3_2 | exon | 71459595 | 71460188 | 71459595 | ID=Msa0422300-mRNA-1:exon:17474;Parent=Msa0422300-mRNA-1 |
| chr3_2 | five_prime_UTR | 71455849 | 71456025 | 71455849 | ID=Msa0422300-mRNA-1:five_prime_utr;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71456026 | 71456108 | 71456026 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71456630 | 71456750 | 71456630 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71456879 | 71456942 | 71456879 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71457046 | 71457130 | 71457046 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71457277 | 71457350 | 71457277 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71457700 | 71457891 | 71457700 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71458130 | 71458218 | 71458130 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71458369 | 71458607 | 71458369 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71459011 | 71459135 | 71459011 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71459363 | 71459484 | 71459363 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | CDS | 71459595 | 71459798 | 71459595 | ID=Msa0422300-mRNA-1:cds;Parent=Msa0422300-mRNA-1 |
| chr3_2 | three_prime_UTR | 71459799 | 71460188 | 71459799 | ID=Msa0422300-mRNA-1:three_prime_utr;Parent=Msa0422300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
