Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468780 | XP_003601857.2 | 97.849 | 465 | 10 | 0 | 1 | 465 | 1 | 465 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468780 | sp|Q8H1F2|RGS1_ARATH | 63.636 | 462 | 162 | 3 | 1 | 461 | 1 | 457 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468780 | G7J2K1 | 97.849 | 465 | 10 | 0 | 1 | 465 | 1 | 465 | 0.0 | 942 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422300 | Msa0468780 | 0.961161 | 2.210738e-119 | -8.615850e-47 |
| Msa0468780 | Msa0468830 | 0.930677 | 1.155711e-93 | -8.615850e-47 |
| Msa0308460 | Msa0468780 | 0.804404 | 2.195891e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468780 | MtrunA17_Chr3g0123191 | 97.849 | 465 | 10 | 0 | 1 | 465 | 1 | 465 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468780 | AT3G26090.1 | 63.636 | 462 | 162 | 3 | 1 | 461 | 1 | 457 | 0.0 | 634 |
| Msa0468780 | AT3G26090.2 | 66.247 | 397 | 133 | 1 | 1 | 397 | 1 | 396 | 0.0 | 571 |
Find 133 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTAAAGGCAGTGGTTTC+TGG | 0.139148 | 3_3:-70487446 | Msa0468780:CDS |
| TGCTAAGAGGCTTCTTTATA+TGG | 0.206814 | 3_3:+70486419 | None:intergenic |
| CAACCTTCTTCTATCAATTA+TGG | 0.226071 | 3_3:-70487394 | Msa0468780:intron |
| TTGTGGACACTAACCATAAA+TGG | 0.245948 | 3_3:+70484244 | None:intergenic |
| CGCACAATGGGCCAGGCTTT+GGG | 0.270464 | 3_3:-70485661 | Msa0468780:CDS |
| TTCTCTTGAACAAGAAATTC+AGG | 0.271912 | 3_3:-70485564 | Msa0468780:CDS |
| CACATTCCTCCTGGAACTTC+AGG | 0.290302 | 3_3:+70484493 | None:intergenic |
| CATTTGTTCTGTCAGTTGTA+TGG | 0.298681 | 3_3:-70486008 | Msa0468780:intron |
| TCGCACAATGGGCCAGGCTT+TGG | 0.310716 | 3_3:-70485662 | Msa0468780:CDS |
| AAACTAATAATCAGAATTAA+AGG | 0.311010 | 3_3:+70483950 | None:intergenic |
| AAAGAATAAGTGGAATTAAA+AGG | 0.316374 | 3_3:+70486819 | None:intergenic |
| AGATACTTTAACCACTTCTT+AGG | 0.319174 | 3_3:-70484059 | Msa0468780:three_prime_UTR |
| CTGGCAACAACTTGAATTAC+AGG | 0.331361 | 3_3:+70487420 | None:intergenic |
| ATTGAGAAGTACATAGTTGC+AGG | 0.335851 | 3_3:-70485009 | Msa0468780:intron |
| AGCTTATCCAATGGTTCATT+AGG | 0.342753 | 3_3:+70485586 | None:intergenic |
| GCCCATTGTGCGAAATTCTC+TGG | 0.360100 | 3_3:+70485672 | None:intergenic |
| TATATCTACAGTTGCTTGGC+TGG | 0.366042 | 3_3:-70485123 | Msa0468780:intron |
| AATCTTCTTCCTGAAGTTCC+AGG | 0.366374 | 3_3:-70484502 | Msa0468780:CDS |
| ATGTAGGAAGGAAGACAAAA+AGG | 0.367948 | 3_3:-70484209 | Msa0468780:three_prime_UTR |
| GGTGAAGGTCCACTAGGGTT+TGG | 0.369983 | 3_3:-70487072 | Msa0468780:CDS |
| CCCTGGATTGTAGGTGCTGC+TGG | 0.385271 | 3_3:-70486794 | Msa0468780:intron |
| TATCTTTCAGGCTTCTCATA+TGG | 0.386081 | 3_3:-70487503 | Msa0468780:intron |
| AGATTCAGTTTCTGTTCATC+AGG | 0.386118 | 3_3:+70488149 | None:intergenic |
| CAAAACTAAAAGAAGAAATC+TGG | 0.386884 | 3_3:+70485927 | None:intergenic |
| TGTATGTTGCCACTTTGGTT+GGG | 0.390598 | 3_3:-70486342 | Msa0468780:CDS |
| TGTGATAATACCCCACTATC+AGG | 0.396001 | 3_3:+70485634 | None:intergenic |
| CTGTGCATCATATAGAGTTC+AGG | 0.397383 | 3_3:-70486309 | Msa0468780:CDS |
| AGAACTTGGCAAAAGATTAC+TGG | 0.399670 | 3_3:-70484530 | Msa0468780:CDS |
| ATTTGTTCTGTCAGTTGTAT+GGG | 0.411134 | 3_3:-70486007 | Msa0468780:intron |
| CTGCGTGAGAAGAATCTATA+TGG | 0.411292 | 3_3:-70485043 | Msa0468780:CDS |
| CTACCATAATTGATAGAAGA+AGG | 0.423216 | 3_3:+70487391 | None:intergenic |
| TTATTTCCAGTTTGGGGTGA+AGG | 0.425413 | 3_3:-70487087 | Msa0468780:intron |
| TCCAGAGAATTTCGCACAAT+GGG | 0.425473 | 3_3:-70485673 | Msa0468780:CDS |
| GGCTAGTATCATGTACATCT+TGG | 0.427662 | 3_3:-70484139 | Msa0468780:three_prime_UTR |
| TTAGGATCTACCCTCGAAAT+CGG | 0.434650 | 3_3:+70485604 | None:intergenic |
| TTGTATGTTGCCACTTTGGT+TGG | 0.435848 | 3_3:-70486343 | Msa0468780:CDS |
| TTGTTAACATCTGTATAGTC+AGG | 0.438021 | 3_3:-70484160 | Msa0468780:three_prime_UTR |
| CCGACTCATGACTTGGTACT+TGG | 0.448826 | 3_3:-70484335 | Msa0468780:exon |
| GTCATACAAAGGACGTCGTT+AGG | 0.450004 | 3_3:+70483975 | None:intergenic |
| AACACATGAAGGCAAACAAC+TGG | 0.456389 | 3_3:+70486364 | None:intergenic |
| CATCTCTCATAGAAGCAAAC+AGG | 0.456965 | 3_3:-70484741 | Msa0468780:CDS |
| CACAAGGTTCCTCGTACTAA+AGG | 0.459346 | 3_3:-70487459 | Msa0468780:CDS |
| TCAAATTTGAAAAGAGCCAT+TGG | 0.462101 | 3_3:-70487228 | Msa0468780:CDS |
| TCTTCTCACGCAGTCATGTT+CGG | 0.462374 | 3_3:+70485053 | None:intergenic |
| ATAGATATAGGGAAATTGTT+AGG | 0.463486 | 3_3:-70488283 | None:intergenic |
| AGAATTTCGCACAATGGGCC+AGG | 0.465661 | 3_3:-70485668 | Msa0468780:CDS |
| ACCAGCAGCACCTACAATCC+AGG | 0.466696 | 3_3:+70486793 | None:intergenic |
| AAAGGCTAGCATACTTGTGT+TGG | 0.468592 | 3_3:-70485758 | Msa0468780:intron |
| GCTTTGGGCATACCTGATAG+TGG | 0.472370 | 3_3:-70485646 | Msa0468780:CDS |
| ATCTCATATCACATTCCTCC+TGG | 0.475428 | 3_3:+70484484 | None:intergenic |
| AGAAGATGATCATGGTGAAA+AGG | 0.477104 | 3_3:+70484384 | None:intergenic |
| TGATGAACAGAAACTGAATC+TGG | 0.483642 | 3_3:-70488147 | Msa0468780:five_prime_UTR |
| ATCCAGGGCAAAAGAATAAG+TGG | 0.484753 | 3_3:+70486809 | None:intergenic |
| TGTGGGACAGCCACCTTTGA+CGG | 0.487114 | 3_3:+70488078 | None:intergenic |
| GCTAGTATCATGTACATCTT+GGG | 0.487898 | 3_3:-70484138 | Msa0468780:three_prime_UTR |
| GTTTGGGGTGAAGGTCCACT+AGG | 0.490024 | 3_3:-70487078 | Msa0468780:CDS |
| AGGAACCTTGTGAACTATGA+AGG | 0.490710 | 3_3:+70487470 | None:intergenic |
| TAAAGTATCTTGAAAAGTGT+AGG | 0.491284 | 3_3:+70484072 | None:intergenic |
| GTGAGGAGGTGTATGTAGGA+AGG | 0.492586 | 3_3:-70484221 | Msa0468780:three_prime_UTR |
| GTATGTTGCCACTTTGGTTG+GGG | 0.493758 | 3_3:-70486341 | Msa0468780:CDS |
| TACGAGCTTGAGCAAATGAC+AGG | 0.497023 | 3_3:-70484453 | Msa0468780:CDS |
| ATATCTACAGTTGCTTGGCT+GGG | 0.500177 | 3_3:-70485122 | Msa0468780:intron |
| ACGTGGAAGTGTTGTTGACT+AGG | 0.505710 | 3_3:-70488234 | Msa0468780:five_prime_UTR |
| TGTGTTGTATGTTGCCACTT+TGG | 0.506197 | 3_3:-70486347 | Msa0468780:CDS |
| GTAATATATCTACAGTTGCT+TGG | 0.514126 | 3_3:-70485127 | Msa0468780:intron |
| GAGAGAAGCTTACAGAATGA+AGG | 0.516329 | 3_3:+70488024 | None:intergenic |
| CACAAAGTGAACCGATTTCG+AGG | 0.518175 | 3_3:-70485615 | Msa0468780:CDS |
| AAAGTATCTTGAAAAGTGTA+GGG | 0.528393 | 3_3:+70484073 | None:intergenic |
| AATGATACCGACTCATGACT+TGG | 0.528462 | 3_3:-70484342 | Msa0468780:exon |
| CTTTGGGCATACCTGATAGT+GGG | 0.533397 | 3_3:-70485645 | Msa0468780:CDS |
| CAGTCATGTTACATGTGGGC+AGG | 0.535899 | 3_3:-70487202 | Msa0468780:intron |
| TACATACACCTCCTCACTTG+TGG | 0.537541 | 3_3:+70484227 | None:intergenic |
| TATCAGGTATGCCCAAAGCC+TGG | 0.539962 | 3_3:+70485650 | None:intergenic |
| GAGATCAGCGCGTGCAAGGT+CGG | 0.544627 | 3_3:+70484703 | None:intergenic |
| GGTAGATCCTAATGAACCAT+TGG | 0.546664 | 3_3:-70485593 | Msa0468780:CDS |
| TTGATGAACTCAGAGACCTC+TGG | 0.548285 | 3_3:-70486285 | Msa0468780:CDS |
| GATCGTGCACTTGATGAAAA+CGG | 0.548765 | 3_3:-70484660 | Msa0468780:intron |
| TGATAGAAGAAGGTTGAAGC+TGG | 0.552933 | 3_3:+70487401 | None:intergenic |
| CTTGTATCATCCGTATCCGT+TGG | 0.553758 | 3_3:-70486253 | Msa0468780:intron |
| AGTTTCAAGTGTGCCGTCAA+AGG | 0.553912 | 3_3:-70488091 | Msa0468780:CDS |
| GAAAGAGATCAGCGCGTGCA+AGG | 0.557629 | 3_3:+70484699 | None:intergenic |
| TATCTACAGTTGCTTGGCTG+GGG | 0.561891 | 3_3:-70485121 | Msa0468780:intron |
| ATGTGGCAGCGATTGCTAAG+AGG | 0.564850 | 3_3:+70486406 | None:intergenic |
| ATGAAGGCAAACAACTGGTA+TGG | 0.568177 | 3_3:+70486369 | None:intergenic |
| TTCAAGAGAAGCTTATCCAA+TGG | 0.569256 | 3_3:+70485577 | None:intergenic |
| GTTCCTCGTACTAAAGGCAG+TGG | 0.569723 | 3_3:-70487453 | Msa0468780:CDS |
| TTTGGGGTGAAGGTCCACTA+GGG | 0.571817 | 3_3:-70487077 | Msa0468780:CDS |
| AATGAAGGAGACAATGGAAA+CGG | 0.572996 | 3_3:+70488039 | None:intergenic |
| ACAAGTGAGGAGGTGTATGT+AGG | 0.576883 | 3_3:-70484225 | Msa0468780:three_prime_UTR |
| TGCTCTCGCAAATCAGCTTG+AGG | 0.581392 | 3_3:-70485705 | Msa0468780:CDS |
| TTCAAGTGTGCCGTCAAAGG+TGG | 0.582518 | 3_3:-70488088 | Msa0468780:CDS |
| CCAAGGTTAAGTTCTGTGCA+TGG | 0.583634 | 3_3:-70484417 | Msa0468780:CDS |
| ATTTCCCTTCATAGTTCACA+AGG | 0.585568 | 3_3:-70487475 | Msa0468780:CDS |
| ATCCAGAGAATTTCGCACAA+TGG | 0.587069 | 3_3:-70485674 | Msa0468780:CDS |
| GAATGTGATATGAGATGTAA+CGG | 0.587155 | 3_3:-70484477 | Msa0468780:CDS |
| CAGGGTGGAATTATTCTCCA+AGG | 0.588521 | 3_3:-70484434 | Msa0468780:CDS |
| ATGGTTAGTGTCCACAAGTG+AGG | 0.590975 | 3_3:-70484238 | Msa0468780:three_prime_UTR |
| AGTTCTTCAGAAGATGATCA+TGG | 0.591447 | 3_3:+70484376 | None:intergenic |
| CCATGCACAGAACTTAACCT+TGG | 0.595101 | 3_3:+70484417 | None:intergenic |
| TGGCAACATACAACACATGA+AGG | 0.596405 | 3_3:+70486353 | None:intergenic |
| AATTAAAGGCGGTCATACAA+AGG | 0.603400 | 3_3:+70483964 | None:intergenic |
| GGAACCTTGTGAACTATGAA+GGG | 0.610171 | 3_3:+70487471 | None:intergenic |
| AATTTGAAAAGAGCCATTGG+TGG | 0.610473 | 3_3:-70487225 | Msa0468780:CDS |
| AAATTCATGACAATATCTCA+TGG | 0.611661 | 3_3:-70485963 | Msa0468780:CDS |
| TTGTACCTGAGTCAGATGAA+TGG | 0.613028 | 3_3:-70488116 | Msa0468780:exon |
| TGTAACATGACTGCCACCAA+TGG | 0.617375 | 3_3:+70487212 | None:intergenic |
| GGTAACAGCTACATAATCTG+TGG | 0.620497 | 3_3:+70488060 | None:intergenic |
| TGAGAAGAATCTATATGGCA+AGG | 0.622563 | 3_3:-70485038 | Msa0468780:CDS |
| AGCAGTTACCCCAACCAAAG+TGG | 0.622897 | 3_3:+70486333 | None:intergenic |
| CTTCTGAAGAACTCAGAATG+TGG | 0.624150 | 3_3:-70484366 | Msa0468780:CDS |
| AAAACTCTAGACCTAAGAAG+TGG | 0.624354 | 3_3:+70484048 | None:intergenic |
| CCAGCAGCACCTACAATCCA+GGG | 0.628273 | 3_3:+70486794 | None:intergenic |
| ACTCGCCATTCATCTGACTC+AGG | 0.631554 | 3_3:+70488111 | None:intergenic |
| ACAAAGTGAACCGATTTCGA+GGG | 0.634894 | 3_3:-70485614 | Msa0468780:CDS |
| GTAACAGCTACATAATCTGT+GGG | 0.637811 | 3_3:+70488061 | None:intergenic |
| TTACAGAATGAAGGAGACAA+TGG | 0.639294 | 3_3:+70488033 | None:intergenic |
| AACAGCAAACCAAACCCTAG+TGG | 0.642601 | 3_3:+70487063 | None:intergenic |
| GGTGGCAGTCATGTTACATG+TGG | 0.644135 | 3_3:-70487207 | Msa0468780:CDS |
| GAACTCAGAGACCTCTGGCG+AGG | 0.644619 | 3_3:-70486280 | Msa0468780:CDS |
| GCTGCCACATGTCAGTTCAG+TGG | 0.646737 | 3_3:-70486393 | Msa0468780:CDS |
| GTTAGTGTCCACAAGTGAGG+AGG | 0.649495 | 3_3:-70484235 | Msa0468780:three_prime_UTR |
| AAAAGGAATGATCTGATCAG+CGG | 0.662063 | 3_3:+70486836 | None:intergenic |
| ATACAAGTATTCCTCGCCAG+AGG | 0.663000 | 3_3:+70486269 | None:intergenic |
| TTTGGGCATACCTGATAGTG+GGG | 0.663068 | 3_3:-70485644 | Msa0468780:CDS |
| CCAAGTACCAAGTCATGAGT+CGG | 0.667900 | 3_3:+70484335 | None:intergenic |
| AAGCTGATTTGCGAGAGCAG+CGG | 0.669302 | 3_3:+70485709 | None:intergenic |
| AAACCACTGCCTTTAGTACG+AGG | 0.671478 | 3_3:+70487450 | None:intergenic |
| CTTCTTCCTGAAGTTCCAGG+AGG | 0.685626 | 3_3:-70484499 | Msa0468780:CDS |
| GTGGCAGTCATGTTACATGT+GGG | 0.712301 | 3_3:-70487206 | Msa0468780:CDS |
| CTAATAATCAGAATTAAAGG+CGG | 0.715963 | 3_3:+70483953 | None:intergenic |
| ACGAGCTTGAGCAAATGACA+GGG | 0.717234 | 3_3:-70484452 | Msa0468780:CDS |
| AGCTTGAGCAAATGACAGGG+TGG | 0.719805 | 3_3:-70484449 | Msa0468780:CDS |
| TGGTCCACTGAACTGACATG+TGG | 0.760232 | 3_3:+70486389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAACAGT+AGG | + | chr3_3:70486339-70486358 | None:intergenic | 10.0% |
| !! | AATCATCAAAGAAAAAAAAA+AGG | + | chr3_3:70484320-70484339 | None:intergenic | 15.0% |
| !! | TTCTCAAATCAAATTATTAT+CGG | + | chr3_3:70484519-70484538 | None:intergenic | 15.0% |
| !! | TAATCTTATTCATATTGTAT+TGG | - | chr3_3:70484688-70484707 | Msa0468780:CDS | 15.0% |
| !!! | ATATTGTAACATATATTTTC+TGG | - | chr3_3:70486161-70486180 | Msa0468780:intron | 15.0% |
| !!! | CAATTTTATTTAGAGATTAA+AGG | + | chr3_3:70486940-70486959 | None:intergenic | 15.0% |
| !!! | AATAAAATTGTTGTTACATT+TGG | - | chr3_3:70486950-70486969 | Msa0468780:intron | 15.0% |
| !!! | AAATTTTGGTTTTACAATTT+TGG | + | chr3_3:70487328-70487347 | None:intergenic | 15.0% |
| !!! | TAAAAAGATTGAGAAAATTT+TGG | + | chr3_3:70487342-70487361 | None:intergenic | 15.0% |
| !! | TTAATTCAAAACAATTTGAT+GGG | - | chr3_3:70487602-70487621 | Msa0468780:intron | 15.0% |
| !!! | ATATCAGTAATTTTCTAAAA+AGG | + | chr3_3:70487953-70487972 | None:intergenic | 15.0% |
| !! | AAAAAAAGGTAAATCAGAAA+GGG | + | chr3_3:70484306-70484325 | None:intergenic | 20.0% |
| !! | AAAAAAAAGGTAAATCAGAA+AGG | + | chr3_3:70484307-70484326 | None:intergenic | 20.0% |
| !!! | CTGTTTCTATAATTAAAAAG+TGG | - | chr3_3:70484392-70484411 | Msa0468780:CDS | 20.0% |
| !!! | TCATATTGTATTGGTAATAA+TGG | - | chr3_3:70484697-70484716 | Msa0468780:CDS | 20.0% |
| !! | TATAAATAAGTCAGAATAGA+CGG | + | chr3_3:70485068-70485087 | None:intergenic | 20.0% |
| !! | AAAGAATAAGTGGAATTAAA+AGG | + | chr3_3:70485415-70485434 | None:intergenic | 20.0% |
| !! | AGCTTCATTAGAAATAAATA+CGG | + | chr3_3:70485771-70485790 | None:intergenic | 20.0% |
| !!! | ACTTTTACTCTTATGTAAAT+AGG | - | chr3_3:70486026-70486045 | Msa0468780:intron | 20.0% |
| !!! | CTTTTACTCTTATGTAAATA+GGG | - | chr3_3:70486027-70486046 | Msa0468780:intron | 20.0% |
| !! | GAAACAGATCATAATATAAA+AGG | - | chr3_3:70486049-70486068 | Msa0468780:intron | 20.0% |
| !! | TTTGCATTACAATGAAATAA+CGG | - | chr3_3:70486362-70486381 | Msa0468780:CDS | 20.0% |
| !!! | ATAATGGTTTTGCTTATTTA+AGG | - | chr3_3:70486770-70486789 | Msa0468780:intron | 20.0% |
| !!! | TAATGGTTTTGCTTATTTAA+GGG | - | chr3_3:70486771-70486790 | Msa0468780:intron | 20.0% |
| !! | GTTTGACAATGTTTAAATAA+AGG | - | chr3_3:70486851-70486870 | Msa0468780:intron | 20.0% |
| !! | TTACTTATACTTTGATGTTT+AGG | + | chr3_3:70487026-70487045 | None:intergenic | 20.0% |
| !!! | TTTTGAACGAAAAAAATACA+AGG | + | chr3_3:70487066-70487085 | None:intergenic | 20.0% |
| !! | GTAGATATATTACAACAATA+AGG | + | chr3_3:70487097-70487116 | None:intergenic | 20.0% |
| !!! | TTGTTACAATGTAATTTTAC+AGG | - | chr3_3:70487449-70487468 | Msa0468780:CDS | 20.0% |
| !!! | CATCAAATTGTTTTGAATTA+AGG | + | chr3_3:70487603-70487622 | None:intergenic | 20.0% |
| !! | CTTAATTCAAAACAATTTGA+TGG | - | chr3_3:70487601-70487620 | Msa0468780:intron | 20.0% |
| !!! | CTTTTTTCTTATTCCATTTA+TGG | - | chr3_3:70487974-70487993 | Msa0468780:intron | 20.0% |
| ! | GTTAGATTAGAAAGTGAATT+AGG | + | chr3_3:70484245-70484264 | None:intergenic | 25.0% |
| ! | AAAAAAGGTAAATCAGAAAG+GGG | + | chr3_3:70484305-70484324 | None:intergenic | 25.0% |
| ! | TGAGTTAAACTCTGTATAAA+CGG | - | chr3_3:70484417-70484436 | Msa0468780:CDS | 25.0% |
| ! | AAGTTCAACAATGAGATTAA+GGG | + | chr3_3:70484633-70484652 | None:intergenic | 25.0% |
| !! | ATTGTATTGGTAATAATGGT+TGG | - | chr3_3:70484701-70484720 | Msa0468780:CDS | 25.0% |
| !!! | AATTTCTTTACTGCTATTTC+AGG | - | chr3_3:70485363-70485382 | Msa0468780:intron | 25.0% |
| ! | CAAAAAAACATCAAAGTACA+CGG | + | chr3_3:70485553-70485572 | None:intergenic | 25.0% |
| ! | AAAAAAAAATGCAACTCTAC+AGG | + | chr3_3:70485576-70485595 | None:intergenic | 25.0% |
| !! | ATATCCAGCAAAATTTTGAA+AGG | + | chr3_3:70485628-70485647 | None:intergenic | 25.0% |
| !! | AGTATGAAAAAGTATACCAA+CGG | + | chr3_3:70485997-70486016 | None:intergenic | 25.0% |
| ! | AGTATCTTAGATTATCTCTT+GGG | + | chr3_3:70486094-70486113 | None:intergenic | 25.0% |
| ! | AAATTCATGACAATATCTCA+TGG | - | chr3_3:70486268-70486287 | Msa0468780:CDS | 25.0% |
| ! | CAAAACTAAAAGAAGAAATC+TGG | + | chr3_3:70486307-70486326 | None:intergenic | 25.0% |
| !!! | CAGATTTCTTCTTTTAGTTT+TGG | - | chr3_3:70486305-70486324 | Msa0468780:CDS | 25.0% |
| !! | CTTATGTTGTCTTCTTTTAA+AGG | - | chr3_3:70486455-70486474 | Msa0468780:intron | 25.0% |
| ! | GCATACATTTATGAGAATAA+TGG | - | chr3_3:70486754-70486773 | Msa0468780:intron | 25.0% |
| !!! | TTTTGAAATCTTATTCCACA+GGG | - | chr3_3:70486984-70487003 | Msa0468780:intron | 25.0% |
| !!! | TGGTTTTACAATTTTGGTAA+TGG | + | chr3_3:70487322-70487341 | None:intergenic | 25.0% |
| !!! | ATTTTCTAAAAAGGTAACTC+TGG | + | chr3_3:70487944-70487963 | None:intergenic | 25.0% |
| !! | AAAGTATCTTGAAAAGTGTA+GGG | + | chr3_3:70488161-70488180 | None:intergenic | 25.0% |
| !! | TAAAGTATCTTGAAAAGTGT+AGG | + | chr3_3:70488162-70488181 | None:intergenic | 25.0% |
| GTTAAGCTCAAAATTCATAG+AGG | + | chr3_3:70484283-70484302 | None:intergenic | 30.0% | |
| ACTCTGTATAAACGGAAAAT+AGG | - | chr3_3:70484425-70484444 | Msa0468780:CDS | 30.0% | |
| AAATCAAATTATTATCGGCG+TGG | + | chr3_3:70484514-70484533 | None:intergenic | 30.0% | |
| AATAATTGAACATAGCCAAG+TGG | - | chr3_3:70484544-70484563 | Msa0468780:intron | 30.0% | |
| AGTTCAACAATGAGATTAAG+GGG | + | chr3_3:70484632-70484651 | None:intergenic | 30.0% | |
| CAAGTTCAACAATGAGATTA+AGG | + | chr3_3:70484634-70484653 | None:intergenic | 30.0% | |
| CAACCTTCTTCTATCAATTA+TGG | - | chr3_3:70484837-70484856 | Msa0468780:intron | 30.0% | |
| CTACCATAATTGATAGAAGA+AGG | + | chr3_3:70484843-70484862 | None:intergenic | 30.0% | |
| TCAAATTTGAAAAGAGCCAT+TGG | - | chr3_3:70485003-70485022 | Msa0468780:intron | 30.0% | |
| TTCGTGTTTATTTCCAGTTT+GGG | - | chr3_3:70485137-70485156 | Msa0468780:intron | 30.0% | |
| GGTGAGTACAAAAATAAAAC+TGG | + | chr3_3:70485284-70485303 | None:intergenic | 30.0% | |
| GTAACACAAACAAAAGCAAA+AGG | + | chr3_3:70485489-70485508 | None:intergenic | 30.0% | |
| TTAGTATTTGCAACATCTTG+TGG | - | chr3_3:70485703-70485722 | Msa0468780:CDS | 30.0% | |
| TTAGAAATAAATACGGCAAC+AGG | + | chr3_3:70485764-70485783 | None:intergenic | 30.0% | |
| ! | AAAAAGTATACCAACGGATA+CGG | + | chr3_3:70485991-70486010 | None:intergenic | 30.0% |
| GAGTATCTTAGATTATCTCT+TGG | + | chr3_3:70486095-70486114 | None:intergenic | 30.0% | |
| GAGCAAAGGTTAAATTATTG+AGG | + | chr3_3:70486204-70486223 | None:intergenic | 30.0% | |
| ATTTGTTCTGTCAGTTGTAT+GGG | - | chr3_3:70486224-70486243 | Msa0468780:intron | 30.0% | |
| TTCTCTTGAACAAGAAATTC+AGG | - | chr3_3:70486667-70486686 | Msa0468780:intron | 30.0% | |
| ! | AAATTCAGGCAGTCTTTTAT+GGG | - | chr3_3:70486681-70486700 | Msa0468780:intron | 30.0% |
| CAACATATTGAGTCAACAAA+AGG | + | chr3_3:70486728-70486747 | None:intergenic | 30.0% | |
| !!! | CTTTTGTTGACTCAATATGT+TGG | - | chr3_3:70486726-70486745 | Msa0468780:intron | 30.0% |
| AGTGATTAAATGTCAGTGTA+AGG | + | chr3_3:70486822-70486841 | None:intergenic | 30.0% | |
| ! | TATGTAACTCTTTGTTGTGT+TGG | - | chr3_3:70486877-70486896 | Msa0468780:intron | 30.0% |
| !!! | CTTTTGAAATCTTATTCCAC+AGG | - | chr3_3:70486983-70487002 | Msa0468780:intron | 30.0% |
| GTAATATATCTACAGTTGCT+TGG | - | chr3_3:70487104-70487123 | Msa0468780:intron | 30.0% | |
| ! | AAGTTTTTCTTCCAACTGTA+GGG | - | chr3_3:70487409-70487428 | Msa0468780:CDS | 30.0% |
| !! | ACCAGGCTAATTTTAATCAA+GGG | + | chr3_3:70487631-70487650 | None:intergenic | 30.0% |
| !! | AACCAGGCTAATTTTAATCA+AGG | + | chr3_3:70487632-70487651 | None:intergenic | 30.0% |
| GAATGTGATATGAGATGTAA+CGG | - | chr3_3:70487754-70487773 | Msa0468780:intron | 30.0% | |
| TTGTTAACATCTGTATAGTC+AGG | - | chr3_3:70488071-70488090 | Msa0468780:CDS | 30.0% | |
| AGATACTTTAACCACTTCTT+AGG | - | chr3_3:70488172-70488191 | Msa0468780:five_prime_UTR | 30.0% | |
| !!! | AGAGTTTTAAGCATACATAC+AGG | - | chr3_3:70488198-70488217 | Msa0468780:five_prime_UTR | 30.0% |
| AGATTCAGTTTCTGTTCATC+AGG | + | chr3_3:70484085-70484104 | None:intergenic | 35.0% | |
| TGATGAACAGAAACTGAATC+TGG | - | chr3_3:70484084-70484103 | Msa0468780:three_prime_UTR | 35.0% | |
| GTAACAGCTACATAATCTGT+GGG | + | chr3_3:70484173-70484192 | None:intergenic | 35.0% | |
| AATGAAGGAGACAATGGAAA+CGG | + | chr3_3:70484195-70484214 | None:intergenic | 35.0% | |
| TTACAGAATGAAGGAGACAA+TGG | + | chr3_3:70484201-70484220 | None:intergenic | 35.0% | |
| CTTCAAAACAATTACCCAAG+TGG | - | chr3_3:70484573-70484592 | Msa0468780:intron | 35.0% | |
| AACTTATGACACATCCACTT+GGG | + | chr3_3:70484590-70484609 | None:intergenic | 35.0% | |
| GTTCAACAATGAGATTAAGG+GGG | + | chr3_3:70484631-70484650 | None:intergenic | 35.0% | |
| TATCTTTCAGGCTTCTCATA+TGG | - | chr3_3:70484728-70484747 | Msa0468780:CDS | 35.0% | |
| ATTTCCCTTCATAGTTCACA+AGG | - | chr3_3:70484756-70484775 | Msa0468780:CDS | 35.0% | |
| GCTAAGCATGATAACAAACA+GGG | + | chr3_3:70484944-70484963 | None:intergenic | 35.0% | |
| AGCTAAGCATGATAACAAAC+AGG | + | chr3_3:70484945-70484964 | None:intergenic | 35.0% | |
| AATTTGAAAAGAGCCATTGG+TGG | - | chr3_3:70485006-70485025 | Msa0468780:intron | 35.0% | |
| CTTCGTGTTTATTTCCAGTT+TGG | - | chr3_3:70485136-70485155 | Msa0468780:intron | 35.0% | |
| TCGTGTTTATTTCCAGTTTG+GGG | - | chr3_3:70485138-70485157 | Msa0468780:intron | 35.0% | |
| AGTGACTACTTGATATTCAG+TGG | - | chr3_3:70485242-70485261 | Msa0468780:intron | 35.0% | |
| CTACTTGATATTCAGTGGTT+AGG | - | chr3_3:70485247-70485266 | Msa0468780:intron | 35.0% | |
| TTAGCACTTGATAAGCAGTA+GGG | + | chr3_3:70485305-70485324 | None:intergenic | 35.0% | |
| TTTAGCACTTGATAAGCAGT+AGG | + | chr3_3:70485306-70485325 | None:intergenic | 35.0% | |
| !! | TTCTTTACTGCTATTTCAGG+AGG | - | chr3_3:70485366-70485385 | Msa0468780:intron | 35.0% |
| AAAAGGAATGATCTGATCAG+CGG | + | chr3_3:70485398-70485417 | None:intergenic | 35.0% | |
| ! | GTGTCCTTTCAAAATTTTGC+TGG | - | chr3_3:70485621-70485640 | Msa0468780:CDS | 35.0% |
| GGCTTCTTTATATGGATAAC+TGG | + | chr3_3:70485807-70485826 | None:intergenic | 35.0% | |
| TGCTAAGAGGCTTCTTTATA+TGG | + | chr3_3:70485815-70485834 | None:intergenic | 35.0% | |
| ! | ATTTTCTGGATATCTCAGCT+TGG | - | chr3_3:70486175-70486194 | Msa0468780:intron | 35.0% |
| CATTTGTTCTGTCAGTTGTA+TGG | - | chr3_3:70486223-70486242 | Msa0468780:intron | 35.0% | |
| AACGGACATTGTTAGTTGAT+TGG | - | chr3_3:70486380-70486399 | Msa0468780:CDS | 35.0% | |
| AGCTTATCCAATGGTTCATT+AGG | + | chr3_3:70486648-70486667 | None:intergenic | 35.0% | |
| TTCAAGAGAAGCTTATCCAA+TGG | + | chr3_3:70486657-70486676 | None:intergenic | 35.0% | |
| ! | GAAATTCAGGCAGTCTTTTA+TGG | - | chr3_3:70486680-70486699 | Msa0468780:intron | 35.0% |
| !!! | CTTTTATGGGATTTGCTGAT+AGG | - | chr3_3:70486694-70486713 | Msa0468780:intron | 35.0% |
| TTGACTCAATATGTTGGCAT+TGG | - | chr3_3:70486732-70486751 | Msa0468780:intron | 35.0% | |
| ! | TTGTGATTGGTTGTTTACTC+TGG | - | chr3_3:70486904-70486923 | Msa0468780:intron | 35.0% |
| TGAGAAGAATCTATATGGCA+AGG | - | chr3_3:70487193-70487212 | Msa0468780:intron | 35.0% | |
| ! | ATTGAGAAGTACATAGTTGC+AGG | - | chr3_3:70487222-70487241 | Msa0468780:CDS | 35.0% |
| AACAAGGGAAAGGATGAAAA+AGG | + | chr3_3:70487275-70487294 | None:intergenic | 35.0% | |
| ! | CAAGTTTTTCTTCCAACTGT+AGG | - | chr3_3:70487408-70487427 | Msa0468780:CDS | 35.0% |
| ! | TAATTTTACAGGTGCAGCTA+TGG | - | chr3_3:70487460-70487479 | Msa0468780:CDS | 35.0% |
| TCCCTTGATTAAAATTAGCC+TGG | - | chr3_3:70487627-70487646 | Msa0468780:intron | 35.0% | |
| ! | GATTAAAATTAGCCTGGTTG+TGG | - | chr3_3:70487633-70487652 | Msa0468780:intron | 35.0% |
| AAAACTATACATCCACAACC+AGG | + | chr3_3:70487648-70487667 | None:intergenic | 35.0% | |
| ! | TAATCTTTTGCCAAGTTCTG+GGG | + | chr3_3:70487700-70487719 | None:intergenic | 35.0% |
| ! | GTAATCTTTTGCCAAGTTCT+GGG | + | chr3_3:70487701-70487720 | None:intergenic | 35.0% |
| ! | AGTAATCTTTTGCCAAGTTC+TGG | + | chr3_3:70487702-70487721 | None:intergenic | 35.0% |
| AGAACTTGGCAAAAGATTAC+TGG | - | chr3_3:70487701-70487720 | Msa0468780:intron | 35.0% | |
| AGAAGATGATCATGGTGAAA+AGG | + | chr3_3:70487850-70487869 | None:intergenic | 35.0% | |
| AGTTCTTCAGAAGATGATCA+TGG | + | chr3_3:70487858-70487877 | None:intergenic | 35.0% | |
| CTAAAAAGGTAACTCTGGTT+TGG | + | chr3_3:70487939-70487958 | None:intergenic | 35.0% | |
| TTGTGGACACTAACCATAAA+TGG | + | chr3_3:70487990-70488009 | None:intergenic | 35.0% | |
| ATGTAGGAAGGAAGACAAAA+AGG | - | chr3_3:70488022-70488041 | Msa0468780:intron | 35.0% | |
| TGTAGGAAGGAAGACAAAAA+GGG | - | chr3_3:70488023-70488042 | Msa0468780:intron | 35.0% | |
| GCTAGTATCATGTACATCTT+GGG | - | chr3_3:70488093-70488112 | Msa0468780:CDS | 35.0% | |
| AAAACTCTAGACCTAAGAAG+TGG | + | chr3_3:70488186-70488205 | None:intergenic | 35.0% | |
| AATTAAAGGCGGTCATACAA+AGG | + | chr3_3:70488270-70488289 | None:intergenic | 35.0% | |
| ! | GTGTGAAACAAAAAAGCACG+TGG | - | chr3_3:70483980-70483999 | Msa0468780:three_prime_UTR | 40.0% |
| TTGTACCTGAGTCAGATGAA+TGG | - | chr3_3:70484115-70484134 | Msa0468780:three_prime_UTR | 40.0% | |
| GGTAACAGCTACATAATCTG+TGG | + | chr3_3:70484174-70484193 | None:intergenic | 40.0% | |
| GAGAGAAGCTTACAGAATGA+AGG | + | chr3_3:70484210-70484229 | None:intergenic | 40.0% | |
| TGTGTCTGGTGTACATAACT+AGG | + | chr3_3:70484482-70484501 | None:intergenic | 40.0% | |
| !!! | GTTTTGAAGAGCTTACCACT+TGG | + | chr3_3:70484562-70484581 | None:intergenic | 40.0% |
| CAACTTATGACACATCCACT+TGG | + | chr3_3:70484591-70484610 | None:intergenic | 40.0% | |
| ACAATGAGATTAAGGGGGTT+TGG | + | chr3_3:70484626-70484645 | None:intergenic | 40.0% | |
| !! | ATGGTTGGCTTCTATCTTTC+AGG | - | chr3_3:70484716-70484735 | Msa0468780:CDS | 40.0% |
| GGAACCTTGTGAACTATGAA+GGG | + | chr3_3:70484763-70484782 | None:intergenic | 40.0% | |
| AGGAACCTTGTGAACTATGA+AGG | + | chr3_3:70484764-70484783 | None:intergenic | 40.0% | |
| CTGGCAACAACTTGAATTAC+AGG | + | chr3_3:70484814-70484833 | None:intergenic | 40.0% | |
| TGATAGAAGAAGGTTGAAGC+TGG | + | chr3_3:70484833-70484852 | None:intergenic | 40.0% | |
| TCAGAATAGACGGCATAAGA+AGG | + | chr3_3:70485058-70485077 | None:intergenic | 40.0% | |
| ! | TTATTTCCAGTTTGGGGTGA+AGG | - | chr3_3:70485144-70485163 | Msa0468780:intron | 40.0% |
| ! | TTCCACTTATTCTTTTGCCC+TGG | - | chr3_3:70485420-70485439 | Msa0468780:intron | 40.0% |
| ATCCAGGGCAAAAGAATAAG+TGG | + | chr3_3:70485425-70485444 | None:intergenic | 40.0% | |
| ! | ATTCTTTTGCCCTGGATTGT+AGG | - | chr3_3:70485428-70485447 | Msa0468780:intron | 40.0% |
| AAATACGGCAACAGGCAAAA+GGG | + | chr3_3:70485756-70485775 | None:intergenic | 40.0% | |
| TAAATACGGCAACAGGCAAA+AGG | + | chr3_3:70485757-70485776 | None:intergenic | 40.0% | |
| ATGAAGGCAAACAACTGGTA+TGG | + | chr3_3:70485865-70485884 | None:intergenic | 40.0% | |
| AACACATGAAGGCAAACAAC+TGG | + | chr3_3:70485870-70485889 | None:intergenic | 40.0% | |
| TGGCAACATACAACACATGA+AGG | + | chr3_3:70485881-70485900 | None:intergenic | 40.0% | |
| ! | TGTGTTGTATGTTGCCACTT+TGG | - | chr3_3:70485884-70485903 | Msa0468780:intron | 40.0% |
| !! | TTGTATGTTGCCACTTTGGT+TGG | - | chr3_3:70485888-70485907 | Msa0468780:intron | 40.0% |
| !! | TGTATGTTGCCACTTTGGTT+GGG | - | chr3_3:70485889-70485908 | Msa0468780:intron | 40.0% |
| CTGTGCATCATATAGAGTTC+AGG | - | chr3_3:70485922-70485941 | Msa0468780:intron | 40.0% | |
| CTGACAGAACAAATGAGCAA+AGG | + | chr3_3:70486218-70486237 | None:intergenic | 40.0% | |
| AAAGGCTAGCATACTTGTGT+TGG | - | chr3_3:70486473-70486492 | Msa0468780:intron | 40.0% | |
| ATCCAGAGAATTTCGCACAA+TGG | - | chr3_3:70486557-70486576 | Msa0468780:intron | 40.0% | |
| TCCAGAGAATTTCGCACAAT+GGG | - | chr3_3:70486558-70486577 | Msa0468780:intron | 40.0% | |
| TGTGATAATACCCCACTATC+AGG | + | chr3_3:70486600-70486619 | None:intergenic | 40.0% | |
| ! | ACAAAGTGAACCGATTTCGA+GGG | - | chr3_3:70486617-70486636 | Msa0468780:intron | 40.0% |
| TTAGGATCTACCCTCGAAAT+CGG | + | chr3_3:70486630-70486649 | None:intergenic | 40.0% | |
| GGTAGATCCTAATGAACCAT+TGG | - | chr3_3:70486638-70486657 | Msa0468780:intron | 40.0% | |
| AATCTTATTCCACAGGGTCT+TGG | - | chr3_3:70486990-70487009 | Msa0468780:intron | 40.0% | |
| TATATCTACAGTTGCTTGGC+TGG | - | chr3_3:70487108-70487127 | Msa0468780:intron | 40.0% | |
| ATATCTACAGTTGCTTGGCT+GGG | - | chr3_3:70487109-70487128 | Msa0468780:intron | 40.0% | |
| CTGCGTGAGAAGAATCTATA+TGG | - | chr3_3:70487188-70487207 | Msa0468780:intron | 40.0% | |
| ! | AGAAGTACATAGTTGCAGGT+TGG | - | chr3_3:70487226-70487245 | Msa0468780:CDS | 40.0% |
| AGTCTCATAGAGGAGAACAA+GGG | + | chr3_3:70487290-70487309 | None:intergenic | 40.0% | |
| AAGTCTCATAGAGGAGAACA+AGG | + | chr3_3:70487291-70487310 | None:intergenic | 40.0% | |
| GCAAAAGCAAAGTCTCATAG+AGG | + | chr3_3:70487300-70487319 | None:intergenic | 40.0% | |
| CATCTCTCATAGAAGCAAAC+AGG | - | chr3_3:70487490-70487509 | Msa0468780:CDS | 40.0% | |
| GATCGTGCACTTGATGAAAA+CGG | - | chr3_3:70487571-70487590 | Msa0468780:intron | 40.0% | |
| AATCTTCTTCCTGAAGTTCC+AGG | - | chr3_3:70487729-70487748 | Msa0468780:intron | 40.0% | |
| ATCTCATATCACATTCCTCC+TGG | + | chr3_3:70487750-70487769 | None:intergenic | 40.0% | |
| ! | CTTCTGAAGAACTCAGAATG+TGG | - | chr3_3:70487865-70487884 | Msa0468780:intron | 40.0% |
| !! | AATGATACCGACTCATGACT+TGG | - | chr3_3:70487889-70487908 | Msa0468780:intron | 40.0% |
| GGCTAGTATCATGTACATCT+TGG | - | chr3_3:70488092-70488111 | Msa0468780:CDS | 40.0% | |
| !! | ACGTGGAAGTGTTGTTGACT+AGG | - | chr3_3:70483997-70484016 | Msa0468780:three_prime_UTR | 45.0% |
| ! | AGTTTCAAGTGTGCCGTCAA+AGG | - | chr3_3:70484140-70484159 | Msa0468780:three_prime_UTR | 45.0% |
| CACAAGGTTCCTCGTACTAA+AGG | - | chr3_3:70484772-70484791 | Msa0468780:intron | 45.0% | |
| AAACCACTGCCTTTAGTACG+AGG | + | chr3_3:70484784-70484803 | None:intergenic | 45.0% | |
| GTACTAAAGGCAGTGGTTTC+TGG | - | chr3_3:70484785-70484804 | Msa0468780:intron | 45.0% | |
| TGTAACATGACTGCCACCAA+TGG | + | chr3_3:70485022-70485041 | None:intergenic | 45.0% | |
| GTGGCAGTCATGTTACATGT+GGG | - | chr3_3:70485025-70485044 | Msa0468780:CDS | 45.0% | |
| AACAGCAAACCAAACCCTAG+TGG | + | chr3_3:70485171-70485190 | None:intergenic | 45.0% | |
| TTCAGCGCACAATTGACAAG+TGG | + | chr3_3:70485340-70485359 | None:intergenic | 45.0% | |
| AATACGGCAACAGGCAAAAG+GGG | + | chr3_3:70485755-70485774 | None:intergenic | 45.0% | |
| !! | GTATGTTGCCACTTTGGTTG+GGG | - | chr3_3:70485890-70485909 | Msa0468780:intron | 45.0% |
| TTGATGAACTCAGAGACCTC+TGG | - | chr3_3:70485946-70485965 | Msa0468780:CDS | 45.0% | |
| ATACAAGTATTCCTCGCCAG+AGG | + | chr3_3:70485965-70485984 | None:intergenic | 45.0% | |
| CTTGTATCATCCGTATCCGT+TGG | - | chr3_3:70485978-70485997 | Msa0468780:CDS | 45.0% | |
| TTCTGGATATCTCAGCTTGG+TGG | - | chr3_3:70486178-70486197 | Msa0468780:intron | 45.0% | |
| CTTTGGGCATACCTGATAGT+GGG | - | chr3_3:70486586-70486605 | Msa0468780:intron | 45.0% | |
| ! | TTTGGGCATACCTGATAGTG+GGG | - | chr3_3:70486587-70486606 | Msa0468780:intron | 45.0% |
| ! | CACAAAGTGAACCGATTTCG+AGG | - | chr3_3:70486616-70486635 | Msa0468780:intron | 45.0% |
| ! | TTGTGTTGGCGAGTTGTGAT+TGG | - | chr3_3:70486891-70486910 | Msa0468780:intron | 45.0% |
| TATCTACAGTTGCTTGGCTG+GGG | - | chr3_3:70487110-70487129 | Msa0468780:intron | 45.0% | |
| TCTTCTCACGCAGTCATGTT+CGG | + | chr3_3:70487181-70487200 | None:intergenic | 45.0% | |
| !! | CATAGTTGCAGGTTGGTACT+TGG | - | chr3_3:70487233-70487252 | Msa0468780:CDS | 45.0% |
| CATAGAGGAGAACAAGGGAA+AGG | + | chr3_3:70487285-70487304 | None:intergenic | 45.0% | |
| TACGAGCTTGAGCAAATGAC+AGG | - | chr3_3:70487778-70487797 | Msa0468780:intron | 45.0% | |
| ACGAGCTTGAGCAAATGACA+GGG | - | chr3_3:70487779-70487798 | Msa0468780:intron | 45.0% | |
| CAGGGTGGAATTATTCTCCA+AGG | - | chr3_3:70487797-70487816 | Msa0468780:intron | 45.0% | |
| CCATGCACAGAACTTAACCT+TGG | + | chr3_3:70487817-70487836 | None:intergenic | 45.0% | |
| CCAAGGTTAAGTTCTGTGCA+TGG | - | chr3_3:70487814-70487833 | Msa0468780:intron | 45.0% | |
| CCAAGTACCAAGTCATGAGT+CGG | + | chr3_3:70487899-70487918 | None:intergenic | 45.0% | |
| ATGGTTAGTGTCCACAAGTG+AGG | - | chr3_3:70487993-70488012 | Msa0468780:intron | 45.0% | |
| TACATACACCTCCTCACTTG+TGG | + | chr3_3:70488007-70488026 | None:intergenic | 45.0% | |
| ! | ACAAGTGAGGAGGTGTATGT+AGG | - | chr3_3:70488006-70488025 | Msa0468780:intron | 45.0% |
| GTCATACAAAGGACGTCGTT+AGG | + | chr3_3:70488259-70488278 | None:intergenic | 45.0% | |
| ACTCGCCATTCATCTGACTC+AGG | + | chr3_3:70484123-70484142 | None:intergenic | 50.0% | |
| TTCAAGTGTGCCGTCAAAGG+TGG | - | chr3_3:70484143-70484162 | Msa0468780:three_prime_UTR | 50.0% | |
| ! | CGTGGTGTCAGTATTGTGTC+TGG | + | chr3_3:70484496-70484515 | None:intergenic | 50.0% |
| GTTCCTCGTACTAAAGGCAG+TGG | - | chr3_3:70484778-70484797 | Msa0468780:intron | 50.0% | |
| GGTGGCAGTCATGTTACATG+TGG | - | chr3_3:70485024-70485043 | Msa0468780:CDS | 50.0% | |
| CAGTCATGTTACATGTGGGC+AGG | - | chr3_3:70485029-70485048 | Msa0468780:CDS | 50.0% | |
| ! | TTTGGGGTGAAGGTCCACTA+GGG | - | chr3_3:70485154-70485173 | Msa0468780:intron | 50.0% |
| GCGCACAATTGACAAGTGGA+CGG | + | chr3_3:70485336-70485355 | None:intergenic | 50.0% | |
| ATACGGCAACAGGCAAAAGG+GGG | + | chr3_3:70485754-70485773 | None:intergenic | 50.0% | |
| ATGTGGCAGCGATTGCTAAG+AGG | + | chr3_3:70485828-70485847 | None:intergenic | 50.0% | |
| TGGTCCACTGAACTGACATG+TGG | + | chr3_3:70485845-70485864 | None:intergenic | 50.0% | |
| AGCAGTTACCCCAACCAAAG+TGG | + | chr3_3:70485901-70485920 | None:intergenic | 50.0% | |
| !! | AAGCTGATTTGCGAGAGCAG+CGG | + | chr3_3:70486525-70486544 | None:intergenic | 50.0% |
| TGCTCTCGCAAATCAGCTTG+AGG | - | chr3_3:70486526-70486545 | Msa0468780:intron | 50.0% | |
| GCCCATTGTGCGAAATTCTC+TGG | + | chr3_3:70486562-70486581 | None:intergenic | 50.0% | |
| AGAATTTCGCACAATGGGCC+AGG | - | chr3_3:70486563-70486582 | Msa0468780:intron | 50.0% | |
| TATCAGGTATGCCCAAAGCC+TGG | + | chr3_3:70486584-70486603 | None:intergenic | 50.0% | |
| ! | GCTTTGGGCATACCTGATAG+TGG | - | chr3_3:70486585-70486604 | Msa0468780:intron | 50.0% |
| CCAAAACATCCAAGACCCTG+TGG | + | chr3_3:70487002-70487021 | None:intergenic | 50.0% | |
| ! | CCACAGGGTCTTGGATGTTT+TGG | - | chr3_3:70486999-70487018 | Msa0468780:intron | 50.0% |
| TCTTCCAACTGTAGGGTGCA+TGG | - | chr3_3:70487416-70487435 | Msa0468780:CDS | 50.0% | |
| AACACCATGCACCCTACAGT+TGG | + | chr3_3:70487423-70487442 | None:intergenic | 50.0% | |
| !!! | TCTTTTGCCAAGTTCTGGGG+AGG | + | chr3_3:70487697-70487716 | None:intergenic | 50.0% |
| CTTCTTCCTGAAGTTCCAGG+AGG | - | chr3_3:70487732-70487751 | Msa0468780:intron | 50.0% | |
| CACATTCCTCCTGGAACTTC+AGG | + | chr3_3:70487741-70487760 | None:intergenic | 50.0% | |
| AGCTTGAGCAAATGACAGGG+TGG | - | chr3_3:70487782-70487801 | Msa0468780:intron | 50.0% | |
| !! | CCGACTCATGACTTGGTACT+TGG | - | chr3_3:70487896-70487915 | Msa0468780:intron | 50.0% |
| GTTAGTGTCCACAAGTGAGG+AGG | - | chr3_3:70487996-70488015 | Msa0468780:intron | 50.0% | |
| ! | GTGAGGAGGTGTATGTAGGA+AGG | - | chr3_3:70488010-70488029 | Msa0468780:intron | 50.0% |
| TGTGGGACAGCCACCTTTGA+CGG | + | chr3_3:70484156-70484175 | None:intergenic | 55.0% | |
| AGTGGACCTTCACCCCAAAC+TGG | + | chr3_3:70485153-70485172 | None:intergenic | 55.0% | |
| ! | GTTTGGGGTGAAGGTCCACT+AGG | - | chr3_3:70485153-70485172 | Msa0468780:intron | 55.0% |
| GGTGAAGGTCCACTAGGGTT+TGG | - | chr3_3:70485159-70485178 | Msa0468780:intron | 55.0% | |
| CCAGCAGCACCTACAATCCA+GGG | + | chr3_3:70485440-70485459 | None:intergenic | 55.0% | |
| ACCAGCAGCACCTACAATCC+AGG | + | chr3_3:70485441-70485460 | None:intergenic | 55.0% | |
| GCTGCCACATGTCAGTTCAG+TGG | - | chr3_3:70485838-70485857 | Msa0468780:intron | 55.0% | |
| GAAAGAGATCAGCGCGTGCA+AGG | + | chr3_3:70487535-70487554 | None:intergenic | 55.0% | |
| !! | CCAAGTTCTGGGGAGGTGAA+TGG | + | chr3_3:70487690-70487709 | None:intergenic | 55.0% |
| CCATTCACCTCCCCAGAACT+TGG | - | chr3_3:70487687-70487706 | Msa0468780:intron | 55.0% | |
| ! | CCCTGGATTGTAGGTGCTGC+TGG | - | chr3_3:70485437-70485456 | Msa0468780:intron | 60.0% |
| GAACTCAGAGACCTCTGGCG+AGG | - | chr3_3:70485951-70485970 | Msa0468780:CDS | 60.0% | |
| TCGCACAATGGGCCAGGCTT+TGG | - | chr3_3:70486569-70486588 | Msa0468780:intron | 60.0% | |
| CGCACAATGGGCCAGGCTTT+GGG | - | chr3_3:70486570-70486589 | Msa0468780:intron | 60.0% | |
| GAGATCAGCGCGTGCAAGGT+CGG | + | chr3_3:70487531-70487550 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 70483957 | 70488296 | 70483957 | ID=Msa0468780;Name=Msa0468780 |
| chr3_3 | mRNA | 70483957 | 70488296 | 70483957 | ID=Msa0468780-mRNA-1;Parent=Msa0468780;Name=Msa0468780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=177|1|1|1|1|1|11|390|465 |
| chr3_3 | exon | 70483957 | 70484550 | 70483957 | ID=Msa0468780-mRNA-1:exon:17137;Parent=Msa0468780-mRNA-1 |
| chr3_3 | exon | 70484661 | 70484782 | 70484661 | ID=Msa0468780-mRNA-1:exon:17136;Parent=Msa0468780-mRNA-1 |
| chr3_3 | exon | 70485010 | 70485134 | 70485010 | ID=Msa0468780-mRNA-1:exon:17135;Parent=Msa0468780-mRNA-1 |
| chr3_3 | exon | 70485538 | 70485776 | 70485538 | ID=Msa0468780-mRNA-1:exon:17134;Parent=Msa0468780-mRNA-1 |
| chr3_3 | exon | 70485927 | 70486015 | 70485927 | ID=Msa0468780-mRNA-1:exon:17133;Parent=Msa0468780-mRNA-1 |
| chr3_3 | exon | 70486254 | 70486445 | 70486254 | ID=Msa0468780-mRNA-1:exon:17132;Parent=Msa0468780-mRNA-1 |
| chr3_3 | exon | 70486795 | 70486868 | 70486795 | ID=Msa0468780-mRNA-1:exon:17131;Parent=Msa0468780-mRNA-1 |
| chr3_3 | exon | 70487015 | 70487099 | 70487015 | ID=Msa0468780-mRNA-1:exon:17130;Parent=Msa0468780-mRNA-1 |
| chr3_3 | exon | 70487203 | 70487266 | 70487203 | ID=Msa0468780-mRNA-1:exon:17129;Parent=Msa0468780-mRNA-1 |
| chr3_3 | exon | 70487395 | 70487515 | 70487395 | ID=Msa0468780-mRNA-1:exon:17128;Parent=Msa0468780-mRNA-1 |
| chr3_3 | exon | 70488037 | 70488296 | 70488037 | ID=Msa0468780-mRNA-1:exon:17127;Parent=Msa0468780-mRNA-1 |
| chr3_3 | five_prime_UTR | 70488120 | 70488296 | 70488120 | ID=Msa0468780-mRNA-1:five_prime_utr;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70488037 | 70488119 | 70488037 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70487395 | 70487515 | 70487395 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70487203 | 70487266 | 70487203 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70487015 | 70487099 | 70487015 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70486795 | 70486868 | 70486795 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70486254 | 70486445 | 70486254 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70485927 | 70486015 | 70485927 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70485538 | 70485776 | 70485538 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70485010 | 70485134 | 70485010 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70484661 | 70484782 | 70484661 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | CDS | 70484347 | 70484550 | 70484347 | ID=Msa0468780-mRNA-1:cds;Parent=Msa0468780-mRNA-1 |
| chr3_3 | three_prime_UTR | 70483957 | 70484346 | 70483957 | ID=Msa0468780-mRNA-1:three_prime_utr;Parent=Msa0468780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
