Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422320 | XP_003601859.1 | 92.284 | 324 | 25 | 0 | 1 | 324 | 1 | 324 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422320 | sp|Q8L9C4|KCR1_ARATH | 50.162 | 309 | 147 | 4 | 8 | 313 | 13 | 317 | 7.56e-107 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422320 | G7J2K3 | 92.284 | 324 | 25 | 0 | 1 | 324 | 1 | 324 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422320 | Msa0468760 | 0.955079 | 6.916643e-113 | -8.615850e-47 |
| Msa0422320 | Msa1055500 | 0.802334 | 5.895085e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422320 | MtrunA17_Chr3g0123231 | 92.284 | 324 | 25 | 0 | 1 | 324 | 1 | 324 | 0.0 | 619 |
| Msa0422320 | MtrunA17_Chr3g0123201 | 87.981 | 208 | 24 | 1 | 1 | 208 | 1 | 207 | 1.25e-129 | 368 |
| Msa0422320 | MtrunA17_Chr3g0123251 | 52.288 | 306 | 143 | 3 | 7 | 311 | 14 | 317 | 4.13e-110 | 323 |
| Msa0422320 | MtrunA17_Chr8g0381191 | 45.695 | 302 | 154 | 5 | 14 | 309 | 14 | 311 | 7.80e-84 | 255 |
| Msa0422320 | MtrunA17_Chr3g0123211 | 82.051 | 117 | 20 | 1 | 209 | 324 | 18 | 134 | 4.30e-65 | 201 |
| Msa0422320 | MtrunA17_Chr6g0459261 | 24.609 | 256 | 166 | 10 | 28 | 270 | 1 | 242 | 6.31e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422320 | AT1G67730.1 | 50.162 | 309 | 147 | 4 | 8 | 313 | 13 | 317 | 7.68e-108 | 317 |
| Msa0422320 | AT1G24470.1 | 44.118 | 306 | 159 | 5 | 7 | 306 | 12 | 311 | 2.41e-85 | 259 |
| Msa0422320 | AT3G47350.2 | 31.915 | 235 | 141 | 11 | 43 | 268 | 43 | 267 | 4.38e-17 | 80.9 |
| Msa0422320 | AT5G65205.1 | 33.175 | 211 | 115 | 8 | 50 | 253 | 12 | 203 | 5.55e-17 | 80.1 |
| Msa0422320 | AT5G10050.1 | 32.212 | 208 | 121 | 8 | 50 | 253 | 11 | 202 | 7.81e-17 | 79.7 |
| Msa0422320 | AT3G47350.1 | 32.836 | 201 | 123 | 9 | 43 | 241 | 43 | 233 | 1.70e-16 | 79.0 |
| Msa0422320 | AT3G47360.1 | 34.197 | 193 | 117 | 7 | 50 | 241 | 51 | 234 | 2.52e-16 | 78.6 |
| Msa0422320 | AT5G50590.2 | 30.085 | 236 | 144 | 12 | 1 | 228 | 1 | 223 | 6.78e-13 | 67.8 |
| Msa0422320 | AT5G50690.2 | 30.085 | 236 | 144 | 12 | 1 | 228 | 1 | 223 | 6.78e-13 | 67.8 |
| Msa0422320 | AT5G50590.1 | 30.085 | 236 | 144 | 12 | 1 | 228 | 1 | 223 | 1.84e-12 | 67.4 |
| Msa0422320 | AT5G50690.1 | 30.085 | 236 | 144 | 12 | 1 | 228 | 1 | 223 | 1.84e-12 | 67.4 |
| Msa0422320 | AT5G50700.1 | 27.354 | 223 | 142 | 10 | 24 | 242 | 29 | 235 | 1.10e-11 | 65.5 |
| Msa0422320 | AT5G50600.1 | 27.354 | 223 | 142 | 10 | 24 | 242 | 29 | 235 | 1.10e-11 | 65.5 |
Find 75 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCTTTGCTGTATTTATC+TGG | 0.218962 | 3_2:-71468146 | None:intergenic |
| TAAAATAAAACTGTGTTATA+TGG | 0.233193 | 3_2:-71466142 | None:intergenic |
| GTGGGGAAGAAATAATTAAA+AGG | 0.234262 | 3_2:+71466537 | Msa0422320:CDS |
| TAGGAACTGATAACTAAATT+TGG | 0.244128 | 3_2:-71468383 | None:intergenic |
| TCCATATCCAGTTGAGAAAA+TGG | 0.256156 | 3_2:-71466280 | None:intergenic |
| GTTCTCTGCATGCACCAATT+TGG | 0.257486 | 3_2:+71467311 | Msa0422320:CDS |
| GAGATCATAGATAGAGGTTT+TGG | 0.260229 | 3_2:+71466470 | Msa0422320:CDS |
| GAAAATTCCTGATGTATTCT+TGG | 0.266263 | 3_2:+71468241 | Msa0422320:CDS |
| TGCTTCTGATCCTTTGATTT+GGG | 0.273639 | 3_2:-71468321 | None:intergenic |
| ATGCTTCTGATCCTTTGATT+TGG | 0.286947 | 3_2:-71468322 | None:intergenic |
| TAGCTGCTTGTATTCCAAAT+TGG | 0.299344 | 3_2:-71467325 | None:intergenic |
| GCTATTATTAACATTGGTTC+TGG | 0.322146 | 3_2:+71466749 | Msa0422320:CDS |
| CCACAACAGTAGCAACTAAT+AGG | 0.328452 | 3_2:-71468508 | None:intergenic |
| TGAACTTTGGGTGGATCATT+TGG | 0.330433 | 3_2:+71468485 | Msa0422320:three_prime_UTR |
| TGAGGTTGATTTGGATTTGA+TGG | 0.331496 | 3_2:+71466643 | Msa0422320:CDS |
| ACAGCAAAGCATGCACAAAA+TGG | 0.347107 | 3_2:+71468156 | Msa0422320:CDS |
| GCTAGTAGGAAGAAATTATC+AGG | 0.382917 | 3_2:-71466215 | None:intergenic |
| CACTTTCACAGTGATTAGTT+AGG | 0.407221 | 3_2:-71468402 | None:intergenic |
| AACTCAATGAATATGGATCA+TGG | 0.408560 | 3_2:+71466327 | Msa0422320:CDS |
| CTACTAGCTACAACCCTCTT+AGG | 0.414187 | 3_2:+71466230 | Msa0422320:CDS |
| GGACTCAACATTCTCTTAGT+TGG | 0.416862 | 3_2:+71466413 | Msa0422320:CDS |
| TTGCTGTATTTATCTGGTGT+TGG | 0.417488 | 3_2:-71468140 | None:intergenic |
| ACATAGGAAGGAGAGGATAT+TGG | 0.419840 | 3_2:+71466060 | Msa0422320:five_prime_UTR |
| TGGGGAAGAAATAATTAAAA+GGG | 0.429047 | 3_2:+71466538 | Msa0422320:CDS |
| GGCTATTGAGTTTGCATCAA+AGG | 0.438737 | 3_2:+71466391 | Msa0422320:CDS |
| TTGCTTTACTTGCGTAAAAG+AGG | 0.440044 | 3_2:+71468284 | Msa0422320:CDS |
| ATCTGCAGTCATTTCTCATA+AGG | 0.441313 | 3_2:+71468219 | Msa0422320:CDS |
| GATGTTGCTTCAAGTTTAAG+AGG | 0.454000 | 3_2:-71466443 | None:intergenic |
| TAGATATGCAAAATATTAGT+GGG | 0.462830 | 3_2:+71466519 | Msa0422320:CDS |
| ACTGGCTCCACCGACGGAAT+CGG | 0.464329 | 3_2:+71466359 | Msa0422320:CDS |
| ATAAAACTGTGTTATATGGC+TGG | 0.467555 | 3_2:-71466138 | None:intergenic |
| ATGACTGCAGATTGTGAAAG+AGG | 0.476374 | 3_2:-71468208 | None:intergenic |
| TAGGAATCCAAGAATACATC+AGG | 0.482800 | 3_2:-71468248 | None:intergenic |
| CTACTGATGGTAAAGAAACT+AGG | 0.486452 | 3_2:-71466169 | None:intergenic |
| GCTATTGAGTTTGCATCAAA+GGG | 0.487091 | 3_2:+71466392 | Msa0422320:CDS |
| GGATCATGGGCTATAATCAC+TGG | 0.492561 | 3_2:+71466341 | Msa0422320:CDS |
| AGGGTTGAAGAAGCAATAGA+TGG | 0.494206 | 3_2:+71466557 | Msa0422320:CDS |
| AAAGGAGCTATTATTAACAT+TGG | 0.495088 | 3_2:+71466743 | Msa0422320:CDS |
| GGCTTTGCCGATTCCGTCGG+TGG | 0.499989 | 3_2:-71466366 | None:intergenic |
| TGAATGTTGAAGCAACAACT+TGG | 0.501215 | 3_2:+71466681 | Msa0422320:CDS |
| AGGAATTGACATCCAGTGTC+AGG | 0.503731 | 3_2:+71467347 | Msa0422320:CDS |
| TCAAAAGAGATCATAGATAG+AGG | 0.505199 | 3_2:+71466464 | Msa0422320:CDS |
| CTAAGAGGGTTGTAGCTAGT+AGG | 0.507413 | 3_2:-71466229 | None:intergenic |
| GCAATAGATGGTTTAGATGT+GGG | 0.512671 | 3_2:+71466569 | Msa0422320:CDS |
| ATTCATTCACTTACATAGGA+AGG | 0.513370 | 3_2:+71466048 | Msa0422320:five_prime_UTR |
| CCTATTAGTTGCTACTGTTG+TGG | 0.515855 | 3_2:+71468508 | Msa0422320:three_prime_UTR |
| ATAGATATGCAAAATATTAG+TGG | 0.521164 | 3_2:+71466518 | Msa0422320:CDS |
| TTTCTAGATTGAACTTTGGG+TGG | 0.524537 | 3_2:+71468476 | Msa0422320:three_prime_UTR |
| CATGGCTTTGCCGATTCCGT+CGG | 0.528840 | 3_2:-71466369 | None:intergenic |
| AAACAGAGATGAAGCCTAAG+AGG | 0.530377 | 3_2:-71466244 | None:intergenic |
| AGTGTGACAAGAGGATATGA+AGG | 0.532299 | 3_2:-71466788 | None:intergenic |
| TTATATTCATTCACTTACAT+AGG | 0.533803 | 3_2:+71466044 | Msa0422320:five_prime_UTR |
| TTTAGTTAATGGTGCTGGTG+TGG | 0.543103 | 3_2:+71466595 | Msa0422320:CDS |
| ACTCAATGAATATGGATCAT+GGG | 0.544412 | 3_2:+71466328 | Msa0422320:CDS |
| AAAGCATGCACAAAATGGAT+TGG | 0.549128 | 3_2:+71468161 | Msa0422320:CDS |
| AGCAATAGATGGTTTAGATG+TGG | 0.552337 | 3_2:+71466568 | Msa0422320:CDS |
| ATCAAGGACTCCCAAATCAA+AGG | 0.561610 | 3_2:+71468311 | Msa0422320:CDS |
| TGCAGATTGTGAAAGAGGTA+AGG | 0.571426 | 3_2:-71468203 | None:intergenic |
| GCGTAAAAGAGGACTCATCA+AGG | 0.575238 | 3_2:+71468295 | Msa0422320:CDS |
| CGACGGAATCGGCAAAGCCA+TGG | 0.576830 | 3_2:+71466370 | Msa0422320:CDS |
| ATGTTGCTTCAAGTTTAAGA+GGG | 0.582534 | 3_2:-71466442 | None:intergenic |
| AAGCAAATTACGCAACATGT+AGG | 0.583318 | 3_2:-71468267 | None:intergenic |
| TTCACTTACATAGGAAGGAG+AGG | 0.586445 | 3_2:+71466053 | Msa0422320:five_prime_UTR |
| TGATGCAAACTCAATAGCCA+TGG | 0.587697 | 3_2:-71466387 | None:intergenic |
| ATAATCACTGGCTCCACCGA+CGG | 0.588414 | 3_2:+71466353 | Msa0422320:CDS |
| AATCACTGTGAAAGTGAGAA+TGG | 0.592262 | 3_2:+71468409 | Msa0422320:three_prime_UTR |
| GGCAACAGAGAACCTGACAC+TGG | 0.604575 | 3_2:-71467359 | None:intergenic |
| TGTATATCACTCACTACTGA+TGG | 0.605162 | 3_2:-71466182 | None:intergenic |
| AACAGAGATGAAGCCTAAGA+GGG | 0.614837 | 3_2:-71466243 | None:intergenic |
| GCTGCATAAAGTGTGACAAG+AGG | 0.621587 | 3_2:-71466797 | None:intergenic |
| AATTTGGAATACAAGCAGCT+AGG | 0.635752 | 3_2:+71467327 | Msa0422320:CDS |
| TTATATGGCTGGCATGGCAA+AGG | 0.643857 | 3_2:-71466127 | None:intergenic |
| AGATATGCAAAATATTAGTG+GGG | 0.650967 | 3_2:+71466520 | Msa0422320:CDS |
| ACTGTGTTATATGGCTGGCA+TGG | 0.658040 | 3_2:-71466133 | None:intergenic |
| AGTAGTGAGTGATATACACA+TGG | 0.682827 | 3_2:+71466187 | Msa0422320:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAACTGTGTTATA+TGG | - | chr3_2:71466145-71466164 | None:intergenic | 15.0% |
| !!! | TTTTTTTGAAATGAAACATA+AGG | + | chr3_2:71467488-71467507 | Msa0422320:intron | 15.0% |
| !! | TTATATTCATTCACTTACAT+AGG | + | chr3_2:71466044-71466063 | Msa0422320:five_prime_UTR | 20.0% |
| !! | ATAGATATGCAAAATATTAG+TGG | + | chr3_2:71466518-71466537 | Msa0422320:CDS | 20.0% |
| !! | TAGATATGCAAAATATTAGT+GGG | + | chr3_2:71466519-71466538 | Msa0422320:CDS | 20.0% |
| !!! | TTTTTCTTCTTAATCATACT+AGG | - | chr3_2:71466725-71466744 | None:intergenic | 20.0% |
| !! | AGTATGATTAAGAAGAAAAA+AGG | + | chr3_2:71466725-71466744 | Msa0422320:CDS | 20.0% |
| !! | GTTTAGAAAGAATAAGAAAA+GGG | - | chr3_2:71466923-71466942 | None:intergenic | 20.0% |
| !! | TACTTTCTTTCTAATCTAAA+AGG | - | chr3_2:71466957-71466976 | None:intergenic | 20.0% |
| !! | ACAAAATTATATAGAGTGAA+AGG | - | chr3_2:71467069-71467088 | None:intergenic | 20.0% |
| !! | TTACATAAATAACAATGAAG+AGG | - | chr3_2:71467203-71467222 | None:intergenic | 20.0% |
| !! | TTAATTAATACAACTACTTC+AGG | - | chr3_2:71467240-71467259 | None:intergenic | 20.0% |
| !! | TCAAGATATGAATTCATATT+TGG | - | chr3_2:71467265-71467284 | None:intergenic | 20.0% |
| !! | GATTATTCATCAAAACATAA+GGG | - | chr3_2:71467396-71467415 | None:intergenic | 20.0% |
| !! | AGATTATTCATCAAAACATA+AGG | - | chr3_2:71467397-71467416 | None:intergenic | 20.0% |
| !! | GTTTATCACCATTAATTAAA+GGG | - | chr3_2:71467466-71467485 | None:intergenic | 20.0% |
| !! | AGTTTATCACCATTAATTAA+AGG | - | chr3_2:71467467-71467486 | None:intergenic | 20.0% |
| !!! | ATGTAAAGTATATTTTCATG+TGG | + | chr3_2:71467573-71467592 | Msa0422320:intron | 20.0% |
| !!! | TGTAAAGTATATTTTCATGT+GGG | + | chr3_2:71467574-71467593 | Msa0422320:intron | 20.0% |
| !! | TTCAATGTAATTATATGTGT+TGG | + | chr3_2:71467762-71467781 | Msa0422320:intron | 20.0% |
| !! | TGAAATGAATTTGAATATAC+AGG | + | chr3_2:71468064-71468083 | Msa0422320:intron | 20.0% |
| !! | CAATCTAGAAAATACAAAAA+AGG | - | chr3_2:71468467-71468486 | None:intergenic | 20.0% |
| !!! | TATTTTCTAGATTGAACTTT+GGG | + | chr3_2:71468473-71468492 | Msa0422320:three_prime_UTR | 20.0% |
| !!! | TATTCATTGAGTTTTTTGTG+TGG | - | chr3_2:71466320-71466339 | None:intergenic | 25.0% |
| ! | CACAAAAAACTCAATGAATA+TGG | + | chr3_2:71466320-71466339 | Msa0422320:CDS | 25.0% |
| ! | AGATATGCAAAATATTAGTG+GGG | + | chr3_2:71466520-71466539 | Msa0422320:CDS | 25.0% |
| ! | TGGGGAAGAAATAATTAAAA+GGG | + | chr3_2:71466538-71466557 | Msa0422320:CDS | 25.0% |
| ! | TCATGAAAAAATCTAGCATA+AGG | - | chr3_2:71466626-71466645 | None:intergenic | 25.0% |
| !!! | TTATGCTAGATTTTTTCATG+AGG | + | chr3_2:71466625-71466644 | Msa0422320:CDS | 25.0% |
| !!! | ATTTTTTCATGAGGTTGATT+TGG | + | chr3_2:71466634-71466653 | Msa0422320:CDS | 25.0% |
| ! | AAAGGAGCTATTATTAACAT+TGG | + | chr3_2:71466743-71466762 | Msa0422320:CDS | 25.0% |
| ! | GGTTTAGAAAGAATAAGAAA+AGG | - | chr3_2:71466924-71466943 | None:intergenic | 25.0% |
| ! | CAAATTTACACTAATAGACA+TGG | - | chr3_2:71467043-71467062 | None:intergenic | 25.0% |
| !!! | AACATAAGGTAATTGATTTG+AGG | + | chr3_2:71467502-71467521 | Msa0422320:intron | 25.0% |
| !!! | TTTTTTATCTTCCAACTTGA+AGG | + | chr3_2:71467606-71467625 | Msa0422320:intron | 25.0% |
| ! | ACATAAAAAAAGAGTTAGGT+TGG | - | chr3_2:71467644-71467663 | None:intergenic | 25.0% |
| !!! | AACCTAACTCTTTTTTTATG+TGG | + | chr3_2:71467643-71467662 | Msa0422320:intron | 25.0% |
| !!! | TGTAATTTTTAGTCCATGTT+TGG | + | chr3_2:71467856-71467875 | Msa0422320:intron | 25.0% |
| ! | AAAATCACTGTAACATACAA+TGG | - | chr3_2:71467903-71467922 | None:intergenic | 25.0% |
| !! | ATTTTTGTTGACACAAACAA+TGG | - | chr3_2:71468092-71468111 | None:intergenic | 25.0% |
| ! | TAGGAACTGATAACTAAATT+TGG | - | chr3_2:71468386-71468405 | None:intergenic | 25.0% |
| !! | GTATTTTCTAGATTGAACTT+TGG | + | chr3_2:71468472-71468491 | Msa0422320:three_prime_UTR | 25.0% |
| ATTCATTCACTTACATAGGA+AGG | + | chr3_2:71466048-71466067 | Msa0422320:five_prime_UTR | 30.0% | |
| ATAAAACTGTGTTATATGGC+TGG | - | chr3_2:71466141-71466160 | None:intergenic | 30.0% | |
| ! | TCTTTTTCCATTTTCTCAAC+TGG | + | chr3_2:71466273-71466292 | Msa0422320:CDS | 30.0% |
| AACTCAATGAATATGGATCA+TGG | + | chr3_2:71466327-71466346 | Msa0422320:CDS | 30.0% | |
| ACTCAATGAATATGGATCAT+GGG | + | chr3_2:71466328-71466347 | Msa0422320:CDS | 30.0% | |
| ! | ATGTTGCTTCAAGTTTAAGA+GGG | - | chr3_2:71466445-71466464 | None:intergenic | 30.0% |
| TCAAAAGAGATCATAGATAG+AGG | + | chr3_2:71466464-71466483 | Msa0422320:CDS | 30.0% | |
| GTGGGGAAGAAATAATTAAA+AGG | + | chr3_2:71466537-71466556 | Msa0422320:CDS | 30.0% | |
| !!! | GATGTGGGAATTTTAGTTAA+TGG | + | chr3_2:71466584-71466603 | Msa0422320:CDS | 30.0% |
| !! | GCTATTATTAACATTGGTTC+TGG | + | chr3_2:71466749-71466768 | Msa0422320:CDS | 30.0% |
| TTCTTTCTAAACCATGCTTA+TGG | + | chr3_2:71466931-71466950 | Msa0422320:intron | 30.0% | |
| TACTCACACCCTTTAATTAA+TGG | + | chr3_2:71467455-71467474 | Msa0422320:intron | 30.0% | |
| !! | AAAAAAGAGTTAGGTTGGTA+TGG | - | chr3_2:71467639-71467658 | None:intergenic | 30.0% |
| CACCACATAAAAAAAGAGTT+AGG | - | chr3_2:71467648-71467667 | None:intergenic | 30.0% | |
| ! | GTAATTATATGTGTTGGTGT+CGG | + | chr3_2:71467768-71467787 | Msa0422320:intron | 30.0% |
| !! | TATAGGTACAAAGGTATCTA+AGG | - | chr3_2:71468018-71468037 | None:intergenic | 30.0% |
| TTGTGTCAACAAAAATGACA+AGG | + | chr3_2:71468096-71468115 | Msa0422320:CDS | 30.0% | |
| AACAAAAATGACAAGGATGA+GGG | + | chr3_2:71468103-71468122 | Msa0422320:CDS | 30.0% | |
| !! | ATGGATTGGCTATGAAAAAT+TGG | + | chr3_2:71468175-71468194 | Msa0422320:CDS | 30.0% |
| GAAAATTCCTGATGTATTCT+TGG | + | chr3_2:71468241-71468260 | Msa0422320:CDS | 30.0% | |
| CTACTGATGGTAAAGAAACT+AGG | - | chr3_2:71466172-71466191 | None:intergenic | 35.0% | |
| TGTATATCACTCACTACTGA+TGG | - | chr3_2:71466185-71466204 | None:intergenic | 35.0% | |
| AGTAGTGAGTGATATACACA+TGG | + | chr3_2:71466187-71466206 | Msa0422320:exon | 35.0% | |
| GCTAGTAGGAAGAAATTATC+AGG | - | chr3_2:71466218-71466237 | None:intergenic | 35.0% | |
| ! | TCCATTTTCTCAACTGGATA+TGG | + | chr3_2:71466279-71466298 | Msa0422320:CDS | 35.0% |
| TCCATATCCAGTTGAGAAAA+TGG | - | chr3_2:71466283-71466302 | None:intergenic | 35.0% | |
| GCTATTGAGTTTGCATCAAA+GGG | + | chr3_2:71466392-71466411 | Msa0422320:CDS | 35.0% | |
| ! | GATGTTGCTTCAAGTTTAAG+AGG | - | chr3_2:71466446-71466465 | None:intergenic | 35.0% |
| ! | GAGATCATAGATAGAGGTTT+TGG | + | chr3_2:71466470-71466489 | Msa0422320:CDS | 35.0% |
| AGCAATAGATGGTTTAGATG+TGG | + | chr3_2:71466568-71466587 | Msa0422320:CDS | 35.0% | |
| GCAATAGATGGTTTAGATGT+GGG | + | chr3_2:71466569-71466588 | Msa0422320:CDS | 35.0% | |
| !!! | GGAATTTTAGTTAATGGTGC+TGG | + | chr3_2:71466590-71466609 | Msa0422320:CDS | 35.0% |
| !! | TGAGGTTGATTTGGATTTGA+TGG | + | chr3_2:71466643-71466662 | Msa0422320:CDS | 35.0% |
| TGAATGTTGAAGCAACAACT+TGG | + | chr3_2:71466681-71466700 | Msa0422320:CDS | 35.0% | |
| AATCTAAAAGGCCATAAGCA+TGG | - | chr3_2:71466945-71466964 | None:intergenic | 35.0% | |
| ! | TATTTTGCTGACAGTGTGTT+AGG | - | chr3_2:71467000-71467019 | None:intergenic | 35.0% |
| TAGCTGCTTGTATTCCAAAT+TGG | - | chr3_2:71467328-71467347 | None:intergenic | 35.0% | |
| ! | AATTTGGAATACAAGCAGCT+AGG | + | chr3_2:71467327-71467346 | Msa0422320:CDS | 35.0% |
| AACATAAGGGAAAAGAAGAG+AGG | - | chr3_2:71467383-71467402 | None:intergenic | 35.0% | |
| GTATCAATGACCAACATCTT+TGG | - | chr3_2:71467438-71467457 | None:intergenic | 35.0% | |
| !! | GTGCTTGAGTTGAATATGTT+AGG | + | chr3_2:71467665-71467684 | Msa0422320:intron | 35.0% |
| TACTCCTAACTTATGAAGCA+CGG | - | chr3_2:71467816-71467835 | None:intergenic | 35.0% | |
| ATCTCAAGGTATAGGTACAA+AGG | - | chr3_2:71468027-71468046 | None:intergenic | 35.0% | |
| CAGAATACATCTCAAGGTAT+AGG | - | chr3_2:71468035-71468054 | None:intergenic | 35.0% | |
| TAAGCTCAGAATACATCTCA+AGG | - | chr3_2:71468041-71468060 | None:intergenic | 35.0% | |
| CAACAAAAATGACAAGGATG+AGG | + | chr3_2:71468102-71468121 | Msa0422320:CDS | 35.0% | |
| TTGCTGTATTTATCTGGTGT+TGG | - | chr3_2:71468143-71468162 | None:intergenic | 35.0% | |
| ! | CATGCTTTGCTGTATTTATC+TGG | - | chr3_2:71468149-71468168 | None:intergenic | 35.0% |
| AAAGCATGCACAAAATGGAT+TGG | + | chr3_2:71468161-71468180 | Msa0422320:CDS | 35.0% | |
| ATCTGCAGTCATTTCTCATA+AGG | + | chr3_2:71468219-71468238 | Msa0422320:CDS | 35.0% | |
| TAGGAATCCAAGAATACATC+AGG | - | chr3_2:71468251-71468270 | None:intergenic | 35.0% | |
| AAGCAAATTACGCAACATGT+AGG | - | chr3_2:71468270-71468289 | None:intergenic | 35.0% | |
| TTGCTTTACTTGCGTAAAAG+AGG | + | chr3_2:71468284-71468303 | Msa0422320:CDS | 35.0% | |
| ! | TGCTTCTGATCCTTTGATTT+GGG | - | chr3_2:71468324-71468343 | None:intergenic | 35.0% |
| ATGCTTCTGATCCTTTGATT+TGG | - | chr3_2:71468325-71468344 | None:intergenic | 35.0% | |
| ! | CACTTTCACAGTGATTAGTT+AGG | - | chr3_2:71468405-71468424 | None:intergenic | 35.0% |
| AATCACTGTGAAAGTGAGAA+TGG | + | chr3_2:71468409-71468428 | Msa0422320:three_prime_UTR | 35.0% | |
| TTTCTAGATTGAACTTTGGG+TGG | + | chr3_2:71468476-71468495 | Msa0422320:three_prime_UTR | 35.0% | |
| TTCACTTACATAGGAAGGAG+AGG | + | chr3_2:71466053-71466072 | Msa0422320:five_prime_UTR | 40.0% | |
| ACATAGGAAGGAGAGGATAT+TGG | + | chr3_2:71466060-71466079 | Msa0422320:five_prime_UTR | 40.0% | |
| AACAGAGATGAAGCCTAAGA+GGG | - | chr3_2:71466246-71466265 | None:intergenic | 40.0% | |
| AAACAGAGATGAAGCCTAAG+AGG | - | chr3_2:71466247-71466266 | None:intergenic | 40.0% | |
| TGATGCAAACTCAATAGCCA+TGG | - | chr3_2:71466390-71466409 | None:intergenic | 40.0% | |
| GGCTATTGAGTTTGCATCAA+AGG | + | chr3_2:71466391-71466410 | Msa0422320:CDS | 40.0% | |
| GGACTCAACATTCTCTTAGT+TGG | + | chr3_2:71466413-71466432 | Msa0422320:CDS | 40.0% | |
| AGGGTTGAAGAAGCAATAGA+TGG | + | chr3_2:71466557-71466576 | Msa0422320:CDS | 40.0% | |
| !! | TTTAGTTAATGGTGCTGGTG+TGG | + | chr3_2:71466595-71466614 | Msa0422320:CDS | 40.0% |
| AGTGTGACAAGAGGATATGA+AGG | - | chr3_2:71466791-71466810 | None:intergenic | 40.0% | |
| GACAACTCATCCAAAGATGT+TGG | + | chr3_2:71467425-71467444 | Msa0422320:intron | 40.0% | |
| ATGGTAGGTTTCCTTCAAGT+TGG | - | chr3_2:71467620-71467639 | None:intergenic | 40.0% | |
| !! | AAGAGTTAGGTTGGTATGGT+AGG | - | chr3_2:71467635-71467654 | None:intergenic | 40.0% |
| AACTCACGTCAATCCAAACA+TGG | - | chr3_2:71467872-71467891 | None:intergenic | 40.0% | |
| ACAGCAAAGCATGCACAAAA+TGG | + | chr3_2:71468156-71468175 | Msa0422320:CDS | 40.0% | |
| TGCAGATTGTGAAAGAGGTA+AGG | - | chr3_2:71468206-71468225 | None:intergenic | 40.0% | |
| ATGACTGCAGATTGTGAAAG+AGG | - | chr3_2:71468211-71468230 | None:intergenic | 40.0% | |
| ATCAAGGACTCCCAAATCAA+AGG | + | chr3_2:71468311-71468330 | Msa0422320:CDS | 40.0% | |
| TGAACTTTGGGTGGATCATT+TGG | + | chr3_2:71468485-71468504 | Msa0422320:three_prime_UTR | 40.0% | |
| CCACAACAGTAGCAACTAAT+AGG | - | chr3_2:71468511-71468530 | None:intergenic | 40.0% | |
| CCTATTAGTTGCTACTGTTG+TGG | + | chr3_2:71468508-71468527 | Msa0422320:three_prime_UTR | 40.0% | |
| TTATATGGCTGGCATGGCAA+AGG | - | chr3_2:71466130-71466149 | None:intergenic | 45.0% | |
| ACTGTGTTATATGGCTGGCA+TGG | - | chr3_2:71466136-71466155 | None:intergenic | 45.0% | |
| CTAAGAGGGTTGTAGCTAGT+AGG | - | chr3_2:71466232-71466251 | None:intergenic | 45.0% | |
| CTACTAGCTACAACCCTCTT+AGG | + | chr3_2:71466230-71466249 | Msa0422320:CDS | 45.0% | |
| ! | GGATCATGGGCTATAATCAC+TGG | + | chr3_2:71466341-71466360 | Msa0422320:CDS | 45.0% |
| GCTGCATAAAGTGTGACAAG+AGG | - | chr3_2:71466800-71466819 | None:intergenic | 45.0% | |
| AGTGTGTTAGGCTTAGGCAA+AGG | - | chr3_2:71466988-71467007 | None:intergenic | 45.0% | |
| GTTCTCTGCATGCACCAATT+TGG | + | chr3_2:71467311-71467330 | Msa0422320:CDS | 45.0% | |
| AGGAATTGACATCCAGTGTC+AGG | + | chr3_2:71467347-71467366 | Msa0422320:CDS | 45.0% | |
| ATGTACACTGACACGTCGAT+AGG | + | chr3_2:71467713-71467732 | Msa0422320:intron | 45.0% | |
| TGTACACTGACACGTCGATA+GGG | + | chr3_2:71467714-71467733 | Msa0422320:intron | 45.0% | |
| GTGTCCGTGCTTCATAAGTT+AGG | + | chr3_2:71467809-71467828 | Msa0422320:intron | 45.0% | |
| GCGTAAAAGAGGACTCATCA+AGG | + | chr3_2:71468295-71468314 | Msa0422320:CDS | 45.0% | |
| !! | ATAATCACTGGCTCCACCGA+CGG | + | chr3_2:71466353-71466372 | Msa0422320:CDS | 50.0% |
| GCTGACAGTGTGTTAGGCTT+AGG | - | chr3_2:71466994-71467013 | None:intergenic | 50.0% | |
| GTCAGTGTACATGTCGTGTC+AGG | - | chr3_2:71467705-71467724 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | - | chr3_2:71467805-71467824 | None:intergenic | 50.0% | |
| !! | CATGGCTTTGCCGATTCCGT+CGG | - | chr3_2:71466372-71466391 | None:intergenic | 55.0% |
| GGCAACAGAGAACCTGACAC+TGG | - | chr3_2:71467362-71467381 | None:intergenic | 55.0% | |
| TGTCGGACGTGTCTAATCCG+AGG | + | chr3_2:71467785-71467804 | Msa0422320:intron | 55.0% | |
| ! | ACTGGCTCCACCGACGGAAT+CGG | + | chr3_2:71466359-71466378 | Msa0422320:CDS | 60.0% |
| CGACGGAATCGGCAAAGCCA+TGG | + | chr3_2:71466370-71466389 | Msa0422320:CDS | 60.0% | |
| !! | GGCTTTGCCGATTCCGTCGG+TGG | - | chr3_2:71466369-71466388 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 71466035 | 71468559 | 71466035 | ID=Msa0422320;Name=Msa0422320 |
| chr3_2 | mRNA | 71466035 | 71468559 | 71466035 | ID=Msa0422320-mRNA-1;Parent=Msa0422320;Name=Msa0422320-mRNA-1;_AED=0.37;_eAED=0.37;_QI=171|1|1|1|1|1|3|192|324 |
| chr3_2 | exon | 71466035 | 71466828 | 71466035 | ID=Msa0422320-mRNA-1:exon:17493;Parent=Msa0422320-mRNA-1 |
| chr3_2 | exon | 71467299 | 71467368 | 71467299 | ID=Msa0422320-mRNA-1:exon:17494;Parent=Msa0422320-mRNA-1 |
| chr3_2 | exon | 71468086 | 71468559 | 71468086 | ID=Msa0422320-mRNA-1:exon:17495;Parent=Msa0422320-mRNA-1 |
| chr3_2 | five_prime_UTR | 71466035 | 71466205 | 71466035 | ID=Msa0422320-mRNA-1:five_prime_utr;Parent=Msa0422320-mRNA-1 |
| chr3_2 | CDS | 71466206 | 71466828 | 71466206 | ID=Msa0422320-mRNA-1:cds;Parent=Msa0422320-mRNA-1 |
| chr3_2 | CDS | 71467299 | 71467368 | 71467299 | ID=Msa0422320-mRNA-1:cds;Parent=Msa0422320-mRNA-1 |
| chr3_2 | CDS | 71468086 | 71468367 | 71468086 | ID=Msa0422320-mRNA-1:cds;Parent=Msa0422320-mRNA-1 |
| chr3_2 | three_prime_UTR | 71468368 | 71468559 | 71468368 | ID=Msa0422320-mRNA-1:three_prime_utr;Parent=Msa0422320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
