AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0468760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468760 MtrunA17_Chr3g0123231 91.667 276 23 0 1 276 1 276 0.0 524
Msa0468760 MtrunA17_Chr3g0123201 87.981 208 24 1 1 208 1 207 4.82e-130 367
Msa0468760 MtrunA17_Chr3g0123251 54.815 270 119 3 7 275 14 281 9.41e-102 300
Msa0468760 MtrunA17_Chr8g0381191 46.840 269 135 4 14 276 14 280 1.08e-78 241
Msa0468760 MtrunA17_Chr3g0123211 84.058 69 10 1 209 276 18 86 4.66e-36 125
Msa0468760 MtrunA17_Chr6g0459261 24.609 256 166 10 28 270 1 242 3.59e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468760 AT1G67730.1 52.574 272 122 4 8 276 13 280 2.18e-99 294
Msa0468760 AT1G24470.1 44.364 275 143 4 7 275 12 282 3.14e-78 240
Msa0468760 AT3G47350.2 31.915 235 141 11 43 268 43 267 2.92e-17 80.5
Msa0468760 AT5G65205.1 33.175 211 115 8 50 253 12 203 3.22e-17 80.1
Msa0468760 AT5G10050.1 32.212 208 121 8 50 253 11 202 4.27e-17 79.7
Msa0468760 AT3G47350.1 32.836 201 123 9 43 241 43 233 7.99e-17 79.3
Msa0468760 AT3G47360.1 34.197 193 117 7 50 241 51 234 9.35e-17 79.0
Msa0468760 AT3G03330.1 30.328 244 143 11 51 273 48 285 1.48e-14 73.2
Msa0468760 AT5G50590.2 30.085 236 144 12 1 228 1 223 4.25e-13 67.8
Msa0468760 AT5G50690.2 30.085 236 144 12 1 228 1 223 4.25e-13 67.8
Msa0468760 AT5G50590.1 30.085 236 144 12 1 228 1 223 8.42e-13 67.8
Msa0468760 AT5G50690.1 30.085 236 144 12 1 228 1 223 8.42e-13 67.8
Msa0468760 AT5G50700.1 27.354 223 142 10 24 242 29 235 3.44e-12 66.2
Msa0468760 AT5G50600.1 27.354 223 142 10 24 242 29 235 3.44e-12 66.2

Find 61 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCTTTGCTGTATTTATC+TGG 0.218962 3_3:+70475961 None:intergenic
TAAAATAAAACTGTGTTATA+TGG 0.233193 3_3:+70477965 None:intergenic
GTGGGGAAGAAATAATTAAA+AGG 0.234262 3_3:-70477570 Msa0468760:CDS
TCCATATCCAGTTGAGAAAA+TGG 0.256156 3_3:+70477827 None:intergenic
GTTCTCTGCATGCACCAATT+TGG 0.257486 3_3:-70476796 Msa0468760:CDS
GAGATCATAGATAGAGGTTT+TGG 0.260229 3_3:-70477637 Msa0468760:CDS
TAGCTGCTTGTATTCCAAAT+TGG 0.299344 3_3:+70476782 None:intergenic
GCTATTATTAACATTGGTTC+TGG 0.322146 3_3:-70477358 Msa0468760:CDS
TGAGGTTGATTTGGATTTGA+TGG 0.331496 3_3:-70477464 Msa0468760:CDS
ACAGCAAAGCATGCACAAAA+TGG 0.347107 3_3:-70475951 Msa0468760:CDS
GCTAGTAGGAAGAAATTATC+AGG 0.382917 3_3:+70477892 None:intergenic
AACTCAATGAATATGGATCA+TGG 0.408560 3_3:-70477780 Msa0468760:CDS
CTACTAGCTACAACCCTCTT+AGG 0.414187 3_3:-70477877 Msa0468760:CDS
GGACTCAACATTCTCTTAGT+TGG 0.416862 3_3:-70477694 Msa0468760:CDS
TTGCTGTATTTATCTGGTGT+TGG 0.417488 3_3:+70475967 None:intergenic
ACATAGGAAGGAGAGGATAT+TGG 0.419840 3_3:-70478047 Msa0468760:five_prime_UTR
TGGGGAAGAAATAATTAAAA+GGG 0.429047 3_3:-70477569 Msa0468760:CDS
GGCTATTGAGTTTGCATCAA+AGG 0.438737 3_3:-70477716 Msa0468760:CDS
GATGTTGCTTCAAGTTTAAG+AGG 0.454000 3_3:+70477664 None:intergenic
GTTGTACCTTACCTCTTTCA+CGG 0.458680 3_3:-70475910 Msa0468760:CDS
TAGATATGCAAAATATTAGT+GGG 0.462830 3_3:-70477588 Msa0468760:CDS
ACTGGCTCCACCGACGGAAT+CGG 0.464329 3_3:-70477748 Msa0468760:CDS
ATAAAACTGTGTTATATGGC+TGG 0.467555 3_3:+70477969 None:intergenic
ATTAAACGCCACCGTGAAAG+AGG 0.485062 3_3:+70475899 None:intergenic
CTACTGATGGTAAAGAAACT+AGG 0.486452 3_3:+70477938 None:intergenic
GCTATTGAGTTTGCATCAAA+GGG 0.487091 3_3:-70477715 Msa0468760:CDS
GGATCATGGGCTATAATCAC+TGG 0.492561 3_3:-70477766 Msa0468760:CDS
AGGGTTGAAGAAGCAATAGA+TGG 0.494206 3_3:-70477550 Msa0468760:CDS
AAAGGAGCTATTATTAACAT+TGG 0.495088 3_3:-70477364 Msa0468760:CDS
GGCTTTGCCGATTCCGTCGG+TGG 0.499989 3_3:+70477741 None:intergenic
TGAATGTTGAAGCAACAACT+TGG 0.501215 3_3:-70477426 Msa0468760:CDS
AGGAATTGACATCCAGTGTC+AGG 0.503731 3_3:-70476760 Msa0468760:intron
TCAAAAGAGATCATAGATAG+AGG 0.505199 3_3:-70477643 Msa0468760:CDS
CTAAGAGGGTTGTAGCTAGT+AGG 0.507413 3_3:+70477878 None:intergenic
GCAATAGATGGTTTAGATGT+GGG 0.512671 3_3:-70477538 Msa0468760:CDS
ATTCATTCACTTACATAGGA+AGG 0.513370 3_3:-70478059 Msa0468760:five_prime_UTR
ATAGATATGCAAAATATTAG+TGG 0.521164 3_3:-70477589 Msa0468760:CDS
CATGGCTTTGCCGATTCCGT+CGG 0.528840 3_3:+70477738 None:intergenic
AAACAGAGATGAAGCCTAAG+AGG 0.530377 3_3:+70477863 None:intergenic
AGTGTGACAAGAGGATATGA+AGG 0.532299 3_3:+70477319 None:intergenic
TTATATTCATTCACTTACAT+AGG 0.533803 3_3:-70478063 Msa0468760:five_prime_UTR
TTTAGTTAATGGTGCTGGTG+TGG 0.543103 3_3:-70477512 Msa0468760:CDS
ACTCAATGAATATGGATCAT+GGG 0.544412 3_3:-70477779 Msa0468760:CDS
AAAGCATGCACAAAATGGAT+TGG 0.549128 3_3:-70475946 Msa0468760:CDS
AGCAATAGATGGTTTAGATG+TGG 0.552337 3_3:-70477539 Msa0468760:CDS
CGACGGAATCGGCAAAGCCA+TGG 0.576830 3_3:-70477737 Msa0468760:CDS
ATGTTGCTTCAAGTTTAAGA+GGG 0.582534 3_3:+70477665 None:intergenic
TTCACTTACATAGGAAGGAG+AGG 0.586445 3_3:-70478054 Msa0468760:five_prime_UTR
TGATGCAAACTCAATAGCCA+TGG 0.587697 3_3:+70477720 None:intergenic
ATAATCACTGGCTCCACCGA+CGG 0.588414 3_3:-70477754 Msa0468760:CDS
GGCAACAGAGAACCTGACAC+TGG 0.604575 3_3:+70476748 None:intergenic
TGTATATCACTCACTACTGA+TGG 0.605162 3_3:+70477925 None:intergenic
ACGCCACCGTGAAAGAGGTA+AGG 0.606445 3_3:+70475904 None:intergenic
AACAGAGATGAAGCCTAAGA+GGG 0.614837 3_3:+70477864 None:intergenic
GCTGCATAAAGTGTGACAAG+AGG 0.621587 3_3:+70477310 None:intergenic
AATTTGGAATACAAGCAGCT+AGG 0.635752 3_3:-70476780 Msa0468760:CDS
TTATATGGCTGGCATGGCAA+AGG 0.643857 3_3:+70477980 None:intergenic
AGATATGCAAAATATTAGTG+GGG 0.650967 3_3:-70477587 Msa0468760:CDS
ACTGTGTTATATGGCTGGCA+TGG 0.658040 3_3:+70477974 None:intergenic
AGTAGTGAGTGATATACACA+TGG 0.682827 3_3:-70477920 Msa0468760:exon
GTACCTTACCTCTTTCACGG+TGG 0.743898 3_3:-70475907 Msa0468760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAACTGTGTTATA+TGG + chr3_3:70476010-70476029 None:intergenic 15.0%
!!! TTTTTTTGAAATGAAACATA+AGG - chr3_3:70477353-70477372 Msa0468760:CDS 15.0%
!! TAAAATAAAACTGTGTTATA+TGG + chr3_3:70476010-70476029 None:intergenic 15.0%
!!! TTTTTTTGAAATGAAACATA+AGG - chr3_3:70477353-70477372 Msa0468760:CDS 15.0%
!! TTATATTCATTCACTTACAT+AGG - chr3_3:70475909-70475928 Msa0468760:CDS 20.0%
!! ATAGATATGCAAAATATTAG+TGG - chr3_3:70476383-70476402 Msa0468760:intron 20.0%
!! TAGATATGCAAAATATTAGT+GGG - chr3_3:70476384-70476403 Msa0468760:intron 20.0%
!!! TTTTTCTTCTTAATCATACT+AGG + chr3_3:70476590-70476609 None:intergenic 20.0%
!! AGTATGATTAAGAAGAAAAA+AGG - chr3_3:70476590-70476609 Msa0468760:intron 20.0%
!! GTTTAGAAAGAATAAGAAAA+GGG + chr3_3:70476788-70476807 None:intergenic 20.0%
!! TACTTTCTTTCTAATCTAAA+AGG + chr3_3:70476822-70476841 None:intergenic 20.0%
!! ACAAAATTATATAGAGTGAA+AGG + chr3_3:70476934-70476953 None:intergenic 20.0%
!! TTACATAAATAACAATGAAG+AGG + chr3_3:70477068-70477087 None:intergenic 20.0%
!! TTAATTAATACAACTACTTC+AGG + chr3_3:70477105-70477124 None:intergenic 20.0%
!! TCAAGATATGAATTCATATT+TGG + chr3_3:70477130-70477149 None:intergenic 20.0%
!! GATTATTCATCAAAACATAA+GGG + chr3_3:70477261-70477280 None:intergenic 20.0%
!! AGATTATTCATCAAAACATA+AGG + chr3_3:70477262-70477281 None:intergenic 20.0%
!! GTTTATCACCATTAATTAAA+GGG + chr3_3:70477331-70477350 None:intergenic 20.0%
!! AGTTTATCACCATTAATTAA+AGG + chr3_3:70477332-70477351 None:intergenic 20.0%
!!! ATGTAAAGTATATTTTCATG+TGG - chr3_3:70477438-70477457 Msa0468760:CDS 20.0%
!!! TGTAAAGTATATTTTCATGT+GGG - chr3_3:70477439-70477458 Msa0468760:CDS 20.0%
!! TTCAATGTAATTATATGTGT+TGG - chr3_3:70477627-70477646 Msa0468760:CDS 20.0%
!! TGAAATGAATTTGAATATAC+AGG - chr3_3:70477929-70477948 Msa0468760:five_prime_UTR 20.0%
!! TTATATTCATTCACTTACAT+AGG - chr3_3:70475909-70475928 Msa0468760:CDS 20.0%
!! ATAGATATGCAAAATATTAG+TGG - chr3_3:70476383-70476402 Msa0468760:intron 20.0%
!! TAGATATGCAAAATATTAGT+GGG - chr3_3:70476384-70476403 Msa0468760:intron 20.0%
!!! TTTTTCTTCTTAATCATACT+AGG + chr3_3:70476590-70476609 None:intergenic 20.0%
!! AGTATGATTAAGAAGAAAAA+AGG - chr3_3:70476590-70476609 Msa0468760:intron 20.0%
!! GTTTAGAAAGAATAAGAAAA+GGG + chr3_3:70476788-70476807 None:intergenic 20.0%
!! TACTTTCTTTCTAATCTAAA+AGG + chr3_3:70476822-70476841 None:intergenic 20.0%
!! ACAAAATTATATAGAGTGAA+AGG + chr3_3:70476934-70476953 None:intergenic 20.0%
!! TTACATAAATAACAATGAAG+AGG + chr3_3:70477068-70477087 None:intergenic 20.0%
!! TTAATTAATACAACTACTTC+AGG + chr3_3:70477105-70477124 None:intergenic 20.0%
!! TCAAGATATGAATTCATATT+TGG + chr3_3:70477130-70477149 None:intergenic 20.0%
!! GATTATTCATCAAAACATAA+GGG + chr3_3:70477261-70477280 None:intergenic 20.0%
!! AGATTATTCATCAAAACATA+AGG + chr3_3:70477262-70477281 None:intergenic 20.0%
!! GTTTATCACCATTAATTAAA+GGG + chr3_3:70477331-70477350 None:intergenic 20.0%
!! AGTTTATCACCATTAATTAA+AGG + chr3_3:70477332-70477351 None:intergenic 20.0%
!!! ATGTAAAGTATATTTTCATG+TGG - chr3_3:70477438-70477457 Msa0468760:CDS 20.0%
!!! TGTAAAGTATATTTTCATGT+GGG - chr3_3:70477439-70477458 Msa0468760:CDS 20.0%
!! TTCAATGTAATTATATGTGT+TGG - chr3_3:70477627-70477646 Msa0468760:CDS 20.0%
!! TGAAATGAATTTGAATATAC+AGG - chr3_3:70477929-70477948 Msa0468760:five_prime_UTR 20.0%
!!! TATTCATTGAGTTTTTTGTG+TGG + chr3_3:70476185-70476204 None:intergenic 25.0%
! CACAAAAAACTCAATGAATA+TGG - chr3_3:70476185-70476204 Msa0468760:intron 25.0%
! AGATATGCAAAATATTAGTG+GGG - chr3_3:70476385-70476404 Msa0468760:intron 25.0%
! TGGGGAAGAAATAATTAAAA+GGG - chr3_3:70476403-70476422 Msa0468760:intron 25.0%
! TCATGAAAAAATCTAGCATA+AGG + chr3_3:70476491-70476510 None:intergenic 25.0%
!!! TTATGCTAGATTTTTTCATG+AGG - chr3_3:70476490-70476509 Msa0468760:intron 25.0%
!!! ATTTTTTCATGAGGTTGATT+TGG - chr3_3:70476499-70476518 Msa0468760:intron 25.0%
! AAAGGAGCTATTATTAACAT+TGG - chr3_3:70476608-70476627 Msa0468760:intron 25.0%
! GGTTTAGAAAGAATAAGAAA+AGG + chr3_3:70476789-70476808 None:intergenic 25.0%
! CAAATTTACACTAATAGACA+TGG + chr3_3:70476908-70476927 None:intergenic 25.0%
!!! AACATAAGGTAATTGATTTG+AGG - chr3_3:70477367-70477386 Msa0468760:CDS 25.0%
!!! TTTTTTATCTTCCAACTTGA+AGG - chr3_3:70477471-70477490 Msa0468760:CDS 25.0%
! ACATAAAAAAAGAGTTAGGT+TGG + chr3_3:70477509-70477528 None:intergenic 25.0%
!!! AACCTAACTCTTTTTTTATG+TGG - chr3_3:70477508-70477527 Msa0468760:CDS 25.0%
!!! TGTAATTTTTAGTCCATGTT+TGG - chr3_3:70477721-70477740 Msa0468760:CDS 25.0%
! AAAATCACTGTAACATACAA+TGG + chr3_3:70477768-70477787 None:intergenic 25.0%
!! ATTTTTGTTGACACAAACAA+TGG + chr3_3:70477957-70477976 None:intergenic 25.0%
!!! TATTCATTGAGTTTTTTGTG+TGG + chr3_3:70476185-70476204 None:intergenic 25.0%
! CACAAAAAACTCAATGAATA+TGG - chr3_3:70476185-70476204 Msa0468760:intron 25.0%
! AGATATGCAAAATATTAGTG+GGG - chr3_3:70476385-70476404 Msa0468760:intron 25.0%
! TGGGGAAGAAATAATTAAAA+GGG - chr3_3:70476403-70476422 Msa0468760:intron 25.0%
! TCATGAAAAAATCTAGCATA+AGG + chr3_3:70476491-70476510 None:intergenic 25.0%
!!! TTATGCTAGATTTTTTCATG+AGG - chr3_3:70476490-70476509 Msa0468760:intron 25.0%
!!! ATTTTTTCATGAGGTTGATT+TGG - chr3_3:70476499-70476518 Msa0468760:intron 25.0%
! AAAGGAGCTATTATTAACAT+TGG - chr3_3:70476608-70476627 Msa0468760:intron 25.0%
! GGTTTAGAAAGAATAAGAAA+AGG + chr3_3:70476789-70476808 None:intergenic 25.0%
! CAAATTTACACTAATAGACA+TGG + chr3_3:70476908-70476927 None:intergenic 25.0%
!!! AACATAAGGTAATTGATTTG+AGG - chr3_3:70477367-70477386 Msa0468760:CDS 25.0%
!!! TTTTTTATCTTCCAACTTGA+AGG - chr3_3:70477471-70477490 Msa0468760:CDS 25.0%
! ACATAAAAAAAGAGTTAGGT+TGG + chr3_3:70477509-70477528 None:intergenic 25.0%
!!! AACCTAACTCTTTTTTTATG+TGG - chr3_3:70477508-70477527 Msa0468760:CDS 25.0%
!!! TGTAATTTTTAGTCCATGTT+TGG - chr3_3:70477721-70477740 Msa0468760:CDS 25.0%
! AAAATCACTGTAACATACAA+TGG + chr3_3:70477768-70477787 None:intergenic 25.0%
!! ATTTTTGTTGACACAAACAA+TGG + chr3_3:70477957-70477976 None:intergenic 25.0%
ATTCATTCACTTACATAGGA+AGG - chr3_3:70475913-70475932 Msa0468760:CDS 30.0%
ATAAAACTGTGTTATATGGC+TGG + chr3_3:70476006-70476025 None:intergenic 30.0%
! TCTTTTTCCATTTTCTCAAC+TGG - chr3_3:70476138-70476157 Msa0468760:intron 30.0%
AACTCAATGAATATGGATCA+TGG - chr3_3:70476192-70476211 Msa0468760:intron 30.0%
ACTCAATGAATATGGATCAT+GGG - chr3_3:70476193-70476212 Msa0468760:intron 30.0%
! ATGTTGCTTCAAGTTTAAGA+GGG + chr3_3:70476310-70476329 None:intergenic 30.0%
TCAAAAGAGATCATAGATAG+AGG - chr3_3:70476329-70476348 Msa0468760:intron 30.0%
GTGGGGAAGAAATAATTAAA+AGG - chr3_3:70476402-70476421 Msa0468760:intron 30.0%
!!! GATGTGGGAATTTTAGTTAA+TGG - chr3_3:70476449-70476468 Msa0468760:intron 30.0%
!! GCTATTATTAACATTGGTTC+TGG - chr3_3:70476614-70476633 Msa0468760:intron 30.0%
TTCTTTCTAAACCATGCTTA+TGG - chr3_3:70476796-70476815 Msa0468760:CDS 30.0%
TACTCACACCCTTTAATTAA+TGG - chr3_3:70477320-70477339 Msa0468760:CDS 30.0%
!! AAAAAAGAGTTAGGTTGGTA+TGG + chr3_3:70477504-70477523 None:intergenic 30.0%
CACCACATAAAAAAAGAGTT+AGG + chr3_3:70477513-70477532 None:intergenic 30.0%
! GTAATTATATGTGTTGGTGT+CGG - chr3_3:70477633-70477652 Msa0468760:CDS 30.0%
!! TATAGGTACAAAGGTATCTA+AGG + chr3_3:70477883-70477902 None:intergenic 30.0%
TTGTGTCAACAAAAATGACA+AGG - chr3_3:70477961-70477980 Msa0468760:five_prime_UTR 30.0%
AACAAAAATGACAAGGATGA+GGG - chr3_3:70477968-70477987 Msa0468760:five_prime_UTR 30.0%
!! ATGGATTGGCTATGAAAAAT+TGG - chr3_3:70478040-70478059 Msa0468760:five_prime_UTR 30.0%
ATTCATTCACTTACATAGGA+AGG - chr3_3:70475913-70475932 Msa0468760:CDS 30.0%
ATAAAACTGTGTTATATGGC+TGG + chr3_3:70476006-70476025 None:intergenic 30.0%
! TCTTTTTCCATTTTCTCAAC+TGG - chr3_3:70476138-70476157 Msa0468760:intron 30.0%
AACTCAATGAATATGGATCA+TGG - chr3_3:70476192-70476211 Msa0468760:intron 30.0%
ACTCAATGAATATGGATCAT+GGG - chr3_3:70476193-70476212 Msa0468760:intron 30.0%
! ATGTTGCTTCAAGTTTAAGA+GGG + chr3_3:70476310-70476329 None:intergenic 30.0%
TCAAAAGAGATCATAGATAG+AGG - chr3_3:70476329-70476348 Msa0468760:intron 30.0%
GTGGGGAAGAAATAATTAAA+AGG - chr3_3:70476402-70476421 Msa0468760:intron 30.0%
!!! GATGTGGGAATTTTAGTTAA+TGG - chr3_3:70476449-70476468 Msa0468760:intron 30.0%
!! GCTATTATTAACATTGGTTC+TGG - chr3_3:70476614-70476633 Msa0468760:intron 30.0%
TTCTTTCTAAACCATGCTTA+TGG - chr3_3:70476796-70476815 Msa0468760:CDS 30.0%
TACTCACACCCTTTAATTAA+TGG - chr3_3:70477320-70477339 Msa0468760:CDS 30.0%
!! AAAAAAGAGTTAGGTTGGTA+TGG + chr3_3:70477504-70477523 None:intergenic 30.0%
CACCACATAAAAAAAGAGTT+AGG + chr3_3:70477513-70477532 None:intergenic 30.0%
! GTAATTATATGTGTTGGTGT+CGG - chr3_3:70477633-70477652 Msa0468760:CDS 30.0%
!! TATAGGTACAAAGGTATCTA+AGG + chr3_3:70477883-70477902 None:intergenic 30.0%
TTGTGTCAACAAAAATGACA+AGG - chr3_3:70477961-70477980 Msa0468760:five_prime_UTR 30.0%
AACAAAAATGACAAGGATGA+GGG - chr3_3:70477968-70477987 Msa0468760:five_prime_UTR 30.0%
!! ATGGATTGGCTATGAAAAAT+TGG - chr3_3:70478040-70478059 Msa0468760:five_prime_UTR 30.0%
CTACTGATGGTAAAGAAACT+AGG + chr3_3:70476037-70476056 None:intergenic 35.0%
TGTATATCACTCACTACTGA+TGG + chr3_3:70476050-70476069 None:intergenic 35.0%
AGTAGTGAGTGATATACACA+TGG - chr3_3:70476052-70476071 Msa0468760:intron 35.0%
GCTAGTAGGAAGAAATTATC+AGG + chr3_3:70476083-70476102 None:intergenic 35.0%
! TCCATTTTCTCAACTGGATA+TGG - chr3_3:70476144-70476163 Msa0468760:intron 35.0%
TCCATATCCAGTTGAGAAAA+TGG + chr3_3:70476148-70476167 None:intergenic 35.0%
GCTATTGAGTTTGCATCAAA+GGG - chr3_3:70476257-70476276 Msa0468760:intron 35.0%
! GATGTTGCTTCAAGTTTAAG+AGG + chr3_3:70476311-70476330 None:intergenic 35.0%
! GAGATCATAGATAGAGGTTT+TGG - chr3_3:70476335-70476354 Msa0468760:intron 35.0%
AGCAATAGATGGTTTAGATG+TGG - chr3_3:70476433-70476452 Msa0468760:intron 35.0%
GCAATAGATGGTTTAGATGT+GGG - chr3_3:70476434-70476453 Msa0468760:intron 35.0%
!!! GGAATTTTAGTTAATGGTGC+TGG - chr3_3:70476455-70476474 Msa0468760:intron 35.0%
!! TGAGGTTGATTTGGATTTGA+TGG - chr3_3:70476508-70476527 Msa0468760:intron 35.0%
TGAATGTTGAAGCAACAACT+TGG - chr3_3:70476546-70476565 Msa0468760:intron 35.0%
AATCTAAAAGGCCATAAGCA+TGG + chr3_3:70476810-70476829 None:intergenic 35.0%
! TATTTTGCTGACAGTGTGTT+AGG + chr3_3:70476865-70476884 None:intergenic 35.0%
TAGCTGCTTGTATTCCAAAT+TGG + chr3_3:70477193-70477212 None:intergenic 35.0%
! AATTTGGAATACAAGCAGCT+AGG - chr3_3:70477192-70477211 Msa0468760:intron 35.0%
AACATAAGGGAAAAGAAGAG+AGG + chr3_3:70477248-70477267 None:intergenic 35.0%
GTATCAATGACCAACATCTT+TGG + chr3_3:70477303-70477322 None:intergenic 35.0%
!! GTGCTTGAGTTGAATATGTT+AGG - chr3_3:70477530-70477549 Msa0468760:CDS 35.0%
TACTCCTAACTTATGAAGCA+CGG + chr3_3:70477681-70477700 None:intergenic 35.0%
ATCTCAAGGTATAGGTACAA+AGG + chr3_3:70477892-70477911 None:intergenic 35.0%
CAGAATACATCTCAAGGTAT+AGG + chr3_3:70477900-70477919 None:intergenic 35.0%
TAAGCTCAGAATACATCTCA+AGG + chr3_3:70477906-70477925 None:intergenic 35.0%
CAACAAAAATGACAAGGATG+AGG - chr3_3:70477967-70477986 Msa0468760:five_prime_UTR 35.0%
TTGCTGTATTTATCTGGTGT+TGG + chr3_3:70478008-70478027 None:intergenic 35.0%
! CATGCTTTGCTGTATTTATC+TGG + chr3_3:70478014-70478033 None:intergenic 35.0%
AAAGCATGCACAAAATGGAT+TGG - chr3_3:70478026-70478045 Msa0468760:five_prime_UTR 35.0%
CTACTGATGGTAAAGAAACT+AGG + chr3_3:70476037-70476056 None:intergenic 35.0%
TGTATATCACTCACTACTGA+TGG + chr3_3:70476050-70476069 None:intergenic 35.0%
AGTAGTGAGTGATATACACA+TGG - chr3_3:70476052-70476071 Msa0468760:intron 35.0%
GCTAGTAGGAAGAAATTATC+AGG + chr3_3:70476083-70476102 None:intergenic 35.0%
! TCCATTTTCTCAACTGGATA+TGG - chr3_3:70476144-70476163 Msa0468760:intron 35.0%
TCCATATCCAGTTGAGAAAA+TGG + chr3_3:70476148-70476167 None:intergenic 35.0%
GCTATTGAGTTTGCATCAAA+GGG - chr3_3:70476257-70476276 Msa0468760:intron 35.0%
! GATGTTGCTTCAAGTTTAAG+AGG + chr3_3:70476311-70476330 None:intergenic 35.0%
! GAGATCATAGATAGAGGTTT+TGG - chr3_3:70476335-70476354 Msa0468760:intron 35.0%
AGCAATAGATGGTTTAGATG+TGG - chr3_3:70476433-70476452 Msa0468760:intron 35.0%
GCAATAGATGGTTTAGATGT+GGG - chr3_3:70476434-70476453 Msa0468760:intron 35.0%
!!! GGAATTTTAGTTAATGGTGC+TGG - chr3_3:70476455-70476474 Msa0468760:intron 35.0%
!! TGAGGTTGATTTGGATTTGA+TGG - chr3_3:70476508-70476527 Msa0468760:intron 35.0%
TGAATGTTGAAGCAACAACT+TGG - chr3_3:70476546-70476565 Msa0468760:intron 35.0%
AATCTAAAAGGCCATAAGCA+TGG + chr3_3:70476810-70476829 None:intergenic 35.0%
! TATTTTGCTGACAGTGTGTT+AGG + chr3_3:70476865-70476884 None:intergenic 35.0%
TAGCTGCTTGTATTCCAAAT+TGG + chr3_3:70477193-70477212 None:intergenic 35.0%
! AATTTGGAATACAAGCAGCT+AGG - chr3_3:70477192-70477211 Msa0468760:intron 35.0%
AACATAAGGGAAAAGAAGAG+AGG + chr3_3:70477248-70477267 None:intergenic 35.0%
GTATCAATGACCAACATCTT+TGG + chr3_3:70477303-70477322 None:intergenic 35.0%
!! GTGCTTGAGTTGAATATGTT+AGG - chr3_3:70477530-70477549 Msa0468760:CDS 35.0%
TACTCCTAACTTATGAAGCA+CGG + chr3_3:70477681-70477700 None:intergenic 35.0%
ATCTCAAGGTATAGGTACAA+AGG + chr3_3:70477892-70477911 None:intergenic 35.0%
CAGAATACATCTCAAGGTAT+AGG + chr3_3:70477900-70477919 None:intergenic 35.0%
TAAGCTCAGAATACATCTCA+AGG + chr3_3:70477906-70477925 None:intergenic 35.0%
CAACAAAAATGACAAGGATG+AGG - chr3_3:70477967-70477986 Msa0468760:five_prime_UTR 35.0%
TTGCTGTATTTATCTGGTGT+TGG + chr3_3:70478008-70478027 None:intergenic 35.0%
! CATGCTTTGCTGTATTTATC+TGG + chr3_3:70478014-70478033 None:intergenic 35.0%
AAAGCATGCACAAAATGGAT+TGG - chr3_3:70478026-70478045 Msa0468760:five_prime_UTR 35.0%
TTCACTTACATAGGAAGGAG+AGG - chr3_3:70475918-70475937 Msa0468760:CDS 40.0%
ACATAGGAAGGAGAGGATAT+TGG - chr3_3:70475925-70475944 Msa0468760:CDS 40.0%
AACAGAGATGAAGCCTAAGA+GGG + chr3_3:70476111-70476130 None:intergenic 40.0%
AAACAGAGATGAAGCCTAAG+AGG + chr3_3:70476112-70476131 None:intergenic 40.0%
TGATGCAAACTCAATAGCCA+TGG + chr3_3:70476255-70476274 None:intergenic 40.0%
GGCTATTGAGTTTGCATCAA+AGG - chr3_3:70476256-70476275 Msa0468760:intron 40.0%
GGACTCAACATTCTCTTAGT+TGG - chr3_3:70476278-70476297 Msa0468760:intron 40.0%
AGGGTTGAAGAAGCAATAGA+TGG - chr3_3:70476422-70476441 Msa0468760:intron 40.0%
!! TTTAGTTAATGGTGCTGGTG+TGG - chr3_3:70476460-70476479 Msa0468760:intron 40.0%
AGTGTGACAAGAGGATATGA+AGG + chr3_3:70476656-70476675 None:intergenic 40.0%
GACAACTCATCCAAAGATGT+TGG - chr3_3:70477290-70477309 Msa0468760:intron 40.0%
ATGGTAGGTTTCCTTCAAGT+TGG + chr3_3:70477485-70477504 None:intergenic 40.0%
!! AAGAGTTAGGTTGGTATGGT+AGG + chr3_3:70477500-70477519 None:intergenic 40.0%
AACTCACGTCAATCCAAACA+TGG + chr3_3:70477737-70477756 None:intergenic 40.0%
ACAGCAAAGCATGCACAAAA+TGG - chr3_3:70478021-70478040 Msa0468760:five_prime_UTR 40.0%
GTTGTACCTTACCTCTTTCA+CGG - chr3_3:70478062-70478081 Msa0468760:five_prime_UTR 40.0%
TTCACTTACATAGGAAGGAG+AGG - chr3_3:70475918-70475937 Msa0468760:CDS 40.0%
ACATAGGAAGGAGAGGATAT+TGG - chr3_3:70475925-70475944 Msa0468760:CDS 40.0%
AACAGAGATGAAGCCTAAGA+GGG + chr3_3:70476111-70476130 None:intergenic 40.0%
AAACAGAGATGAAGCCTAAG+AGG + chr3_3:70476112-70476131 None:intergenic 40.0%
TGATGCAAACTCAATAGCCA+TGG + chr3_3:70476255-70476274 None:intergenic 40.0%
GGCTATTGAGTTTGCATCAA+AGG - chr3_3:70476256-70476275 Msa0468760:intron 40.0%
GGACTCAACATTCTCTTAGT+TGG - chr3_3:70476278-70476297 Msa0468760:intron 40.0%
AGGGTTGAAGAAGCAATAGA+TGG - chr3_3:70476422-70476441 Msa0468760:intron 40.0%
!! TTTAGTTAATGGTGCTGGTG+TGG - chr3_3:70476460-70476479 Msa0468760:intron 40.0%
AGTGTGACAAGAGGATATGA+AGG + chr3_3:70476656-70476675 None:intergenic 40.0%
GACAACTCATCCAAAGATGT+TGG - chr3_3:70477290-70477309 Msa0468760:intron 40.0%
ATGGTAGGTTTCCTTCAAGT+TGG + chr3_3:70477485-70477504 None:intergenic 40.0%
!! AAGAGTTAGGTTGGTATGGT+AGG + chr3_3:70477500-70477519 None:intergenic 40.0%
AACTCACGTCAATCCAAACA+TGG + chr3_3:70477737-70477756 None:intergenic 40.0%
ACAGCAAAGCATGCACAAAA+TGG - chr3_3:70478021-70478040 Msa0468760:five_prime_UTR 40.0%
GTTGTACCTTACCTCTTTCA+CGG - chr3_3:70478062-70478081 Msa0468760:five_prime_UTR 40.0%
TTATATGGCTGGCATGGCAA+AGG + chr3_3:70475995-70476014 None:intergenic 45.0%
ACTGTGTTATATGGCTGGCA+TGG + chr3_3:70476001-70476020 None:intergenic 45.0%
CTAAGAGGGTTGTAGCTAGT+AGG + chr3_3:70476097-70476116 None:intergenic 45.0%
CTACTAGCTACAACCCTCTT+AGG - chr3_3:70476095-70476114 Msa0468760:intron 45.0%
! GGATCATGGGCTATAATCAC+TGG - chr3_3:70476206-70476225 Msa0468760:intron 45.0%
GCTGCATAAAGTGTGACAAG+AGG + chr3_3:70476665-70476684 None:intergenic 45.0%
AGTGTGTTAGGCTTAGGCAA+AGG + chr3_3:70476853-70476872 None:intergenic 45.0%
GTTCTCTGCATGCACCAATT+TGG - chr3_3:70477176-70477195 Msa0468760:intron 45.0%
AGGAATTGACATCCAGTGTC+AGG - chr3_3:70477212-70477231 Msa0468760:intron 45.0%
ATGTACACTGACACGTCGAT+AGG - chr3_3:70477578-70477597 Msa0468760:CDS 45.0%
TGTACACTGACACGTCGATA+GGG - chr3_3:70477579-70477598 Msa0468760:CDS 45.0%
GTGTCCGTGCTTCATAAGTT+AGG - chr3_3:70477674-70477693 Msa0468760:CDS 45.0%
TTATATGGCTGGCATGGCAA+AGG + chr3_3:70475995-70476014 None:intergenic 45.0%
ACTGTGTTATATGGCTGGCA+TGG + chr3_3:70476001-70476020 None:intergenic 45.0%
CTAAGAGGGTTGTAGCTAGT+AGG + chr3_3:70476097-70476116 None:intergenic 45.0%
CTACTAGCTACAACCCTCTT+AGG - chr3_3:70476095-70476114 Msa0468760:intron 45.0%
! GGATCATGGGCTATAATCAC+TGG - chr3_3:70476206-70476225 Msa0468760:intron 45.0%
GCTGCATAAAGTGTGACAAG+AGG + chr3_3:70476665-70476684 None:intergenic 45.0%
AGTGTGTTAGGCTTAGGCAA+AGG + chr3_3:70476853-70476872 None:intergenic 45.0%
GTTCTCTGCATGCACCAATT+TGG - chr3_3:70477176-70477195 Msa0468760:intron 45.0%
AGGAATTGACATCCAGTGTC+AGG - chr3_3:70477212-70477231 Msa0468760:intron 45.0%
ATGTACACTGACACGTCGAT+AGG - chr3_3:70477578-70477597 Msa0468760:CDS 45.0%
TGTACACTGACACGTCGATA+GGG - chr3_3:70477579-70477598 Msa0468760:CDS 45.0%
GTGTCCGTGCTTCATAAGTT+AGG - chr3_3:70477674-70477693 Msa0468760:CDS 45.0%
!! ATAATCACTGGCTCCACCGA+CGG - chr3_3:70476218-70476237 Msa0468760:intron 50.0%
GCTGACAGTGTGTTAGGCTT+AGG + chr3_3:70476859-70476878 None:intergenic 50.0%
GTCAGTGTACATGTCGTGTC+AGG + chr3_3:70477570-70477589 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG + chr3_3:70477670-70477689 None:intergenic 50.0%
GTACCTTACCTCTTTCACGG+TGG - chr3_3:70478065-70478084 Msa0468760:five_prime_UTR 50.0%
!! ATAATCACTGGCTCCACCGA+CGG - chr3_3:70476218-70476237 Msa0468760:intron 50.0%
GCTGACAGTGTGTTAGGCTT+AGG + chr3_3:70476859-70476878 None:intergenic 50.0%
GTCAGTGTACATGTCGTGTC+AGG + chr3_3:70477570-70477589 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG + chr3_3:70477670-70477689 None:intergenic 50.0%
GTACCTTACCTCTTTCACGG+TGG - chr3_3:70478065-70478084 Msa0468760:five_prime_UTR 50.0%
!! CATGGCTTTGCCGATTCCGT+CGG + chr3_3:70476237-70476256 None:intergenic 55.0%
GGCAACAGAGAACCTGACAC+TGG + chr3_3:70477227-70477246 None:intergenic 55.0%
TGTCGGACGTGTCTAATCCG+AGG - chr3_3:70477650-70477669 Msa0468760:CDS 55.0%
ACGCCACCGTGAAAGAGGTA+AGG + chr3_3:70478071-70478090 None:intergenic 55.0%
!! CATGGCTTTGCCGATTCCGT+CGG + chr3_3:70476237-70476256 None:intergenic 55.0%
GGCAACAGAGAACCTGACAC+TGG + chr3_3:70477227-70477246 None:intergenic 55.0%
TGTCGGACGTGTCTAATCCG+AGG - chr3_3:70477650-70477669 Msa0468760:CDS 55.0%
ACGCCACCGTGAAAGAGGTA+AGG + chr3_3:70478071-70478090 None:intergenic 55.0%
! ACTGGCTCCACCGACGGAAT+CGG - chr3_3:70476224-70476243 Msa0468760:intron 60.0%
CGACGGAATCGGCAAAGCCA+TGG - chr3_3:70476235-70476254 Msa0468760:intron 60.0%
! ACTGGCTCCACCGACGGAAT+CGG - chr3_3:70476224-70476243 Msa0468760:intron 60.0%
CGACGGAATCGGCAAAGCCA+TGG - chr3_3:70476235-70476254 Msa0468760:intron 60.0%
!! GGCTTTGCCGATTCCGTCGG+TGG + chr3_3:70476234-70476253 None:intergenic 65.0%
!! GGCTTTGCCGATTCCGTCGG+TGG + chr3_3:70476234-70476253 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 70475900 70478094 70475900 ID=Msa0468760;Name=Msa0468760
chr3_3 mRNA 70475900 70478094 70475900 ID=Msa0468760-mRNA-1;Parent=Msa0468760;Name=Msa0468760-mRNA-1;_AED=0.41;_eAED=0.42;_QI=171|0.5|0.33|1|1|1|3|0|278
chr3_3 exon 70475900 70476043 70475900 ID=Msa0468760-mRNA-1:exon:17074;Parent=Msa0468760-mRNA-1
chr3_3 exon 70476761 70476830 70476761 ID=Msa0468760-mRNA-1:exon:17073;Parent=Msa0468760-mRNA-1
chr3_3 exon 70477301 70478094 70477301 ID=Msa0468760-mRNA-1:exon:17072;Parent=Msa0468760-mRNA-1
chr3_3 five_prime_UTR 70477924 70478094 70477924 ID=Msa0468760-mRNA-1:five_prime_utr;Parent=Msa0468760-mRNA-1
chr3_3 CDS 70477301 70477923 70477301 ID=Msa0468760-mRNA-1:cds;Parent=Msa0468760-mRNA-1
chr3_3 CDS 70476761 70476830 70476761 ID=Msa0468760-mRNA-1:cds;Parent=Msa0468760-mRNA-1
chr3_3 CDS 70475900 70476043 70475900 ID=Msa0468760-mRNA-1:cds;Parent=Msa0468760-mRNA-1
Gene Sequence

>Msa0468760

ATGGATCTGCCTGATAATTTCTTCCTACTAGCTACAACCCTCTTAGGCTTCATCTCTGTTTGCAAAGTCTTTTTCCATTTTCTCAACTGGATATGGATCATCTTCTTGAGACCACACAAAAAACTCAATGAATATGGATCATGGGCTATAATCACTGGCTCCACCGACGGAATCGGCAAAGCCATGGCTATTGAGTTTGCATCAAAGGGACTCAACATTCTCTTAGTTGGTAGAAACCCTCTTAAACTTGAAGCAACATCAAAAGAGATCATAGATAGAGGTTTTGGAAATGTTGAAGTCAAATGTGTTGTTATAGATATGCAAAATATTAGTGGGGAAGAAATAATTAAAAGGGTTGAAGAAGCAATAGATGGTTTAGATGTGGGAATTTTAGTTAATGGTGCTGGTGTGGCTTATCCTTATGCTAGATTTTTTCATGAGGTTGATTTGGATTTGATGGATTCTATTATCAAAGTGAATGTTGAAGCAACAACTTGGATTACAAAAGCTGTGCTTCCTAGTATGATTAAGAAGAAAAAAGGAGCTATTATTAACATTGGTTCTGGTTCTACTGTTGTGATTCCTTCATATCCTCTTGTCACACTTTATGCAGCTTCAAAAGCATATCTTGCAATGTTCTCTGCATGCACCAATTTGGAATACAAGCAGCTAGGAATTGACATCCAGTGTCAGGTACCATTGTTTGTGTCAACAAAAATGACAAGGATGAGGGCATCACTTTTTGTTCCAACACCAGATAAATACAGCAAAGCATGCACAAAATGGATTGGCTATGAAAAATTGGTTGTACCTTACCTCTTTCACGGTGGCGTTTAA
Protein sequence

>Msa0468760

MDLPDNFFLLATTLLGFISVCKVFFHFLNWIWIIFLRPHKKLNEYGSWAIITGSTDGIGKAMAIEFASKGLNILLVGRNPLKLEATSKEIIDRGFGNVEVKCVVIDMQNISGEEIIKRVEEAIDGLDVGILVNGAGVAYPYARFFHEVDLDLMDSIIKVNVEATTWITKAVLPSMIKKKKGAIINIGSGSTVVIPSYPLVTLYAASKAYLAMFSACTNLEYKQLGIDIQCQVPLFVSTKMTRMRASLFVPTPDKYSKACTKWIGYEKLVVPYLFHGGV*