AlfalfaGEDB | Msa0468760

M. sativa cultivar zhongmu-4 / Msa0468760

KEGG: K10251
GO: -
PFAM: PF00106.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468760	AFK41296.1	91.667	276	23	0	1	276	1	276	0.0	524

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468760	sp\|Q8L9C4\|KCR1_ARATH	52.574	272	122	4	8	276	13	280	2.15e-98	294

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468760	I3SM04	91.667	276	23	0	1	276	1	276	0.0	524

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0413930	Msa0468760	0.803703	3.070874e-49	-8.615850e-47
Msa0422320	Msa0468760	0.955079	6.916643e-113	-8.615850e-47
Msa0468760	Msa0521880	0.800980	1.117180e-48	-8.615850e-47
Msa0468760	Msa0706370	0.801101	1.055532e-48	-8.615850e-47
Msa0468760	Msa1055500	0.812576	3.955054e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468760	MtrunA17_Chr3g0123231	91.667	276	23	0	1	276	1	276	0.0	524
Msa0468760	MtrunA17_Chr3g0123201	87.981	208	24	1	1	208	1	207	4.82e-130	367
Msa0468760	MtrunA17_Chr3g0123251	54.815	270	119	3	7	275	14	281	9.41e-102	300
Msa0468760	MtrunA17_Chr8g0381191	46.840	269	135	4	14	276	14	280	1.08e-78	241
Msa0468760	MtrunA17_Chr3g0123211	84.058	69	10	1	209	276	18	86	4.66e-36	125
Msa0468760	MtrunA17_Chr6g0459261	24.609	256	166	10	28	270	1	242	3.59e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0468760	AT1G67730.1	52.574	272	122	4	8	276	13	280	2.18e-99	294
Msa0468760	AT1G24470.1	44.364	275	143	4	7	275	12	282	3.14e-78	240
Msa0468760	AT3G47350.2	31.915	235	141	11	43	268	43	267	2.92e-17	80.5
Msa0468760	AT5G65205.1	33.175	211	115	8	50	253	12	203	3.22e-17	80.1
Msa0468760	AT5G10050.1	32.212	208	121	8	50	253	11	202	4.27e-17	79.7
Msa0468760	AT3G47350.1	32.836	201	123	9	43	241	43	233	7.99e-17	79.3
Msa0468760	AT3G47360.1	34.197	193	117	7	50	241	51	234	9.35e-17	79.0
Msa0468760	AT3G03330.1	30.328	244	143	11	51	273	48	285	1.48e-14	73.2
Msa0468760	AT5G50590.2	30.085	236	144	12	1	228	1	223	4.25e-13	67.8
Msa0468760	AT5G50690.2	30.085	236	144	12	1	228	1	223	4.25e-13	67.8

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Find 61 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGAGATGAAGCCTAAG+AGG	0.530377	3_3:+70477863	None:intergenic
AAAGCATGCACAAAATGGAT+TGG	0.549128	3_3:-70475946	Msa0468760:CDS
AAAGGAGCTATTATTAACAT+TGG	0.495088	3_3:-70477364	Msa0468760:CDS
AACAGAGATGAAGCCTAAGA+GGG	0.614837	3_3:+70477864	None:intergenic
AACTCAATGAATATGGATCA+TGG	0.408560	3_3:-70477780	Msa0468760:CDS
AATTTGGAATACAAGCAGCT+AGG	0.635752	3_3:-70476780	Msa0468760:CDS
ACAGCAAAGCATGCACAAAA+TGG	0.347107	3_3:-70475951	Msa0468760:CDS
ACATAGGAAGGAGAGGATAT+TGG	0.419840	3_3:-70478047	Msa0468760:five_prime_UTR
ACGCCACCGTGAAAGAGGTA+AGG	0.606445	3_3:+70475904	None:intergenic
ACTCAATGAATATGGATCAT+GGG	0.544412	3_3:-70477779	Msa0468760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCATTCACTTACATAGGA+AGG	-	chr3_3:70475913-70475932	Msa0468760:CDS	30.0%
ATAAAACTGTGTTATATGGC+TGG	+	chr3_3:70476006-70476025	None:intergenic	30.0%
AACTCAATGAATATGGATCA+TGG	-	chr3_3:70476192-70476211	Msa0468760:intron	30.0%
ACTCAATGAATATGGATCAT+GGG	-	chr3_3:70476193-70476212	Msa0468760:intron	30.0%
TCAAAAGAGATCATAGATAG+AGG	-	chr3_3:70476329-70476348	Msa0468760:intron	30.0%
GTGGGGAAGAAATAATTAAA+AGG	-	chr3_3:70476402-70476421	Msa0468760:intron	30.0%
TTCTTTCTAAACCATGCTTA+TGG	-	chr3_3:70476796-70476815	Msa0468760:CDS	30.0%
TACTCACACCCTTTAATTAA+TGG	-	chr3_3:70477320-70477339	Msa0468760:CDS	30.0%
CACCACATAAAAAAAGAGTT+AGG	+	chr3_3:70477513-70477532	None:intergenic	30.0%
TTGTGTCAACAAAAATGACA+AGG	-	chr3_3:70477961-70477980	Msa0468760:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	70475900	70478094	70475900	ID=Msa0468760;Name=Msa0468760
chr3_3	mRNA	70475900	70478094	70475900	ID=Msa0468760-mRNA-1;Parent=Msa0468760;Name=Msa0468760-mRNA-1;_AED=0.41;_eAED=0.42;_QI=171\|0.5\|0.33\|1\|1\|1\|3\|0\|278
chr3_3	exon	70475900	70476043	70475900	ID=Msa0468760-mRNA-1:exon:17074;Parent=Msa0468760-mRNA-1
chr3_3	exon	70476761	70476830	70476761	ID=Msa0468760-mRNA-1:exon:17073;Parent=Msa0468760-mRNA-1
chr3_3	exon	70477301	70478094	70477301	ID=Msa0468760-mRNA-1:exon:17072;Parent=Msa0468760-mRNA-1
chr3_3	five_prime_UTR	70477924	70478094	70477924	ID=Msa0468760-mRNA-1:five_prime_utr;Parent=Msa0468760-mRNA-1
chr3_3	CDS	70477301	70477923	70477301	ID=Msa0468760-mRNA-1:cds;Parent=Msa0468760-mRNA-1
chr3_3	CDS	70476761	70476830	70476761	ID=Msa0468760-mRNA-1:cds;Parent=Msa0468760-mRNA-1
chr3_3	CDS	70475900	70476043	70475900	ID=Msa0468760-mRNA-1:cds;Parent=Msa0468760-mRNA-1

Gene Sequence

>Msa0468760

ATGGATCTGCCTGATAATTTCTTCCTACTAGCTACAACCCTCTTAGGCTTCATCTCTGTTTGCAAAGTCTTTTTCCATTTTCTCAACTGGATATGGATCATCTTCTTGAGACCACACAAAAAACTCAATGAATATGGATCATGGGCTATAATCACTGGCTCCACCGACGGAATCGGCAAAGCCATGGCTATTGAGTTTGCATCAAAGGGACTCAACATTCTCTTAGTTGGTAGAAACCCTCTTAAACTTGAAGCAACATCAAAAGAGATCATAGATAGAGGTTTTGGAAATGTTGAAGTCAAATGTGTTGTTATAGATATGCAAAATATTAGTGGGGAAGAAATAATTAAAAGGGTTGAAGAAGCAATAGATGGTTTAGATGTGGGAATTTTAGTTAATGGTGCTGGTGTGGCTTATCCTTATGCTAGATTTTTTCATGAGGTTGATTTGGATTTGATGGATTCTATTATCAAAGTGAATGTTGAAGCAACAACTTGGATTACAAAAGCTGTGCTTCCTAGTATGATTAAGAAGAAAAAAGGAGCTATTATTAACATTGGTTCTGGTTCTACTGTTGTGATTCCTTCATATCCTCTTGTCACACTTTATGCAGCTTCAAAAGCATATCTTGCAATGTTCTCTGCATGCACCAATTTGGAATACAAGCAGCTAGGAATTGACATCCAGTGTCAGGTACCATTGTTTGTGTCAACAAAAATGACAAGGATGAGGGCATCACTTTTTGTTCCAACACCAGATAAATACAGCAAAGCATGCACAAAATGGATTGGCTATGAAAAATTGGTTGTACCTTACCTCTTTCACGGTGGCGTTTAA

Protein sequence

>Msa0468760

MDLPDNFFLLATTLLGFISVCKVFFHFLNWIWIIFLRPHKKLNEYGSWAIITGSTDGIGKAMAIEFASKGLNILLVGRNPLKLEATSKEIIDRGFGNVEVKCVVIDMQNISGEEIIKRVEEAIDGLDVGILVNGAGVAYPYARFFHEVDLDLMDSIIKVNVEATTWITKAVLPSMIKKKKGAIINIGSGSTVVIPSYPLVTLYAASKAYLAMFSACTNLEYKQLGIDIQCQVPLFVSTKMTRMRASLFVPTPDKYSKACTKWIGYEKLVVPYLFHGGV*