Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423080 | XP_003601932.2 | 90.761 | 184 | 16 | 1 | 1 | 183 | 81 | 264 | 7.49e-103 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423080 | G7J3P8 | 90.761 | 184 | 16 | 1 | 1 | 183 | 81 | 264 | 3.58e-103 | 307 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0423080 | Msa1380030 | 0.802596 | 5.205809e-49 | -8.615850e-47 |
| Msa0423080 | Msa1435500 | 0.867085 | 1.774168e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423080 | MtrunA17_Chr3g0123831 | 90.761 | 184 | 16 | 1 | 1 | 183 | 81 | 264 | 6.89e-107 | 307 |
| Msa0423080 | MtrunA17_Chr8g0381861 | 52.941 | 170 | 68 | 2 | 30 | 191 | 114 | 279 | 1.55e-46 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423080 | AT5G65250.1 | 54.971 | 171 | 69 | 4 | 5 | 171 | 105 | 271 | 2.49e-46 | 155 |
Find 95 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGAGGCATGCTGAGAAAT+TGG | 0.207238 | 3_2:+72760459 | Msa0423080:CDS |
| GGTAGAGAGGATTGAAAGTT+TGG | 0.218905 | 3_2:+72760396 | Msa0423080:CDS |
| AGACCGCCCAATCTGAAGTT+TGG | 0.306522 | 3_2:+72762772 | Msa0423080:exon |
| AGCAATGCAATCTGAAATAT+TGG | 0.309578 | 3_2:+72762272 | Msa0423080:CDS |
| CGCGATTGTATCGATAGTTT+TGG | 0.332751 | 3_2:+72760219 | Msa0423080:CDS |
| TTGTGGTAGTTGAGTATTAT+TGG | 0.333371 | 3_2:-72759870 | None:intergenic |
| GGAGCCATGTGAGAGTTATC+AGG | 0.333603 | 3_2:+72760431 | Msa0423080:CDS |
| GCTCTCCACGACTTTGGAAT+TGG | 0.336434 | 3_2:-72762697 | None:intergenic |
| AGGAGTTGAGGTTCGGAGTT+TGG | 0.346257 | 3_2:-72760037 | None:intergenic |
| TCGAGGCATGCTGAGAAATT+GGG | 0.352597 | 3_2:+72760460 | Msa0423080:CDS |
| CGGGAAATGGATCGAAGAAT+TGG | 0.361905 | 3_2:+72760242 | Msa0423080:CDS |
| CATATTACCTTCGGATTCAA+TGG | 0.368098 | 3_2:-72760120 | None:intergenic |
| TCGTAATCGCTACGCTTTGA+AGG | 0.374795 | 3_2:+72760495 | Msa0423080:CDS |
| TTGAGGTTCGGAGTTTGGTT+TGG | 0.376745 | 3_2:-72760032 | None:intergenic |
| GTAGACAGGAAGAAAGAATA+TGG | 0.394176 | 3_2:-72762847 | None:intergenic |
| AATTTCTAAGTGGCAAATCT+TGG | 0.406249 | 3_2:+72762822 | Msa0423080:three_prime_UTR |
| TATCTTGCTCTCCACGACTT+TGG | 0.415944 | 3_2:-72762703 | None:intergenic |
| GACCGCCCAATCTGAAGTTT+GGG | 0.417089 | 3_2:+72762773 | Msa0423080:exon |
| ATTCTCTCGCTTGGGAAGTC+TGG | 0.421182 | 3_2:+72762659 | Msa0423080:CDS |
| TTCGGAGTTTGGTTTGGAGT+TGG | 0.422822 | 3_2:-72760026 | None:intergenic |
| ATAGTGTTTGCTGTGGATAT+AGG | 0.422925 | 3_2:+72762911 | Msa0423080:three_prime_UTR |
| TATTGGTGGCTTTAGGTAGC+TGG | 0.422937 | 3_2:-72759853 | None:intergenic |
| AGAAAGAATGTGGGAGGAGG+CGG | 0.429987 | 3_2:-72759971 | None:intergenic |
| ATTACTAGTAACAATTGGTT+AGG | 0.434786 | 3_2:+72762943 | Msa0423080:three_prime_UTR |
| GAGAAATTACTAGTAACAAT+TGG | 0.437810 | 3_2:+72762938 | Msa0423080:three_prime_UTR |
| CTCAACCCAAACTTCAGATT+GGG | 0.439223 | 3_2:-72762778 | None:intergenic |
| TGAGTATTATTGGTGGCTTT+AGG | 0.442395 | 3_2:-72759860 | None:intergenic |
| TTGATCTGATTCTCTCGCTT+GGG | 0.444939 | 3_2:+72762651 | Msa0423080:CDS |
| ACTCAACCCAAACTTCAGAT+TGG | 0.446259 | 3_2:-72762779 | None:intergenic |
| CTTGATCTGATTCTCTCGCT+TGG | 0.446445 | 3_2:+72762650 | Msa0423080:CDS |
| GTGTGGGTGGTGCGTGGATA+CGG | 0.450300 | 3_2:+72760326 | Msa0423080:CDS |
| ACGTTTCTGCATATTACCTT+CGG | 0.457187 | 3_2:-72760129 | None:intergenic |
| GTTTGCTGTGGATATAGGTT+AGG | 0.459806 | 3_2:+72762916 | Msa0423080:three_prime_UTR |
| TGCTAGAGCTCTTGTAGCCT+CGG | 0.462063 | 3_2:-72762253 | None:intergenic |
| ATGCTGAGAAATTGGGGAAA+AGG | 0.467269 | 3_2:+72760467 | Msa0423080:CDS |
| TCAATGGCTTTGAGAAGAAA+CGG | 0.473350 | 3_2:-72760104 | None:intergenic |
| AGAAAATATGAAAGGTGGAT+TGG | 0.482567 | 3_2:+72760375 | Msa0423080:CDS |
| TTGGTTAGGACAGTATCAAT+TGG | 0.491328 | 3_2:+72762957 | Msa0423080:three_prime_UTR |
| TTGGTTTGGAGTTGGAAAGA+AGG | 0.491483 | 3_2:-72760018 | None:intergenic |
| ACTCCGAACCTCAACTCCTT+CGG | 0.493147 | 3_2:+72760041 | Msa0423080:five_prime_UTR |
| CAATGGCTTTGAGAAGAAAC+GGG | 0.493308 | 3_2:-72760103 | None:intergenic |
| TGAAAGGTGGATTGGTAGAG+AGG | 0.494701 | 3_2:+72760383 | Msa0423080:CDS |
| AAAGTTTGGAGAAAGAATTG+AGG | 0.499148 | 3_2:+72760410 | Msa0423080:CDS |
| GGCGGGAGCAGTGGTGGTGA+AGG | 0.501438 | 3_2:-72759994 | None:intergenic |
| TTGACTCTCTTCTTTCGAGA+TGG | 0.509120 | 3_2:+72760174 | Msa0423080:exon |
| ATCAACAATTCAATGTAGAC+AGG | 0.509567 | 3_2:-72762861 | None:intergenic |
| TTGACACTGGTGAGTGGTGT+GGG | 0.517274 | 3_2:+72760310 | Msa0423080:CDS |
| CTGAAGTTTGGGTTGAGTCA+AGG | 0.524234 | 3_2:+72762784 | Msa0423080:exon |
| GGAGTTGGAAAGAAGGTGGC+GGG | 0.524988 | 3_2:-72760011 | None:intergenic |
| CGTGGATACGGACGCGGCAA+TGG | 0.527112 | 3_2:+72760338 | Msa0423080:CDS |
| AGGAGAAAGAATGTGGGAGG+AGG | 0.529831 | 3_2:-72759974 | None:intergenic |
| TTTGACACTGGTGAGTGGTG+TGG | 0.531994 | 3_2:+72760309 | Msa0423080:CDS |
| AAAGAAGGTGGCGGGAGCAG+TGG | 0.534925 | 3_2:-72760003 | None:intergenic |
| AGTAGAGAAAATATGAAAGG+TGG | 0.546819 | 3_2:+72760370 | Msa0423080:CDS |
| AGTCCGAAGGAGTTGAGGTT+CGG | 0.548437 | 3_2:-72760044 | None:intergenic |
| GCAATCTGAAATATTGGAGA+AGG | 0.554196 | 3_2:+72762278 | Msa0423080:CDS |
| GTTTGGAGTTGGAAAGAAGG+TGG | 0.554584 | 3_2:-72760015 | None:intergenic |
| GTGGATATTTCGTGTTGTGA+AGG | 0.555229 | 3_2:-72760081 | None:intergenic |
| GAAGGTGGCGGGAGCAGTGG+TGG | 0.556157 | 3_2:-72760000 | None:intergenic |
| TGGAGTTGGAAAGAAGGTGG+CGG | 0.558091 | 3_2:-72760012 | None:intergenic |
| TGGTAGTTGAGTATTATTGG+TGG | 0.559719 | 3_2:-72759867 | None:intergenic |
| ATAAGTAGAGAAAATATGAA+AGG | 0.568186 | 3_2:+72760367 | Msa0423080:CDS |
| CGAGGCATGCTGAGAAATTG+GGG | 0.575139 | 3_2:+72760461 | Msa0423080:CDS |
| GAGCCATGTGAGAGTTATCA+GGG | 0.576135 | 3_2:+72760432 | Msa0423080:CDS |
| GTGGTGCGTGGATACGGACG+CGG | 0.580851 | 3_2:+72760332 | Msa0423080:CDS |
| CTCAAAGCCATTGAATCCGA+AGG | 0.582277 | 3_2:+72760113 | Msa0423080:five_prime_UTR |
| GTGGTGAAGGAGAAAGAATG+TGG | 0.585252 | 3_2:-72759981 | None:intergenic |
| TAACAGAATTAGTGTTGTGT+GGG | 0.586185 | 3_2:+72760282 | Msa0423080:CDS |
| TTGGGAAGTCTGGTAAGCTG+TGG | 0.588362 | 3_2:+72762669 | Msa0423080:CDS |
| TGAGTGGTGTGGGTGGTGCG+TGG | 0.589058 | 3_2:+72760320 | Msa0423080:CDS |
| GGATACGGACGCGGCAATGG+AGG | 0.597439 | 3_2:+72760341 | Msa0423080:CDS |
| TGGGAAGTCTGGTAAGCTGT+GGG | 0.598835 | 3_2:+72762670 | Msa0423080:CDS |
| TGAAGGAGAAAGAATGTGGG+AGG | 0.602785 | 3_2:-72759977 | None:intergenic |
| TAGGTAGCTGGAAGAAGCAA+TGG | 0.604502 | 3_2:-72759841 | None:intergenic |
| GAAAACCAATTCCAAAGTCG+TGG | 0.604937 | 3_2:+72762692 | Msa0423080:CDS |
| GGTGAAGTCCGAAGGAGTTG+AGG | 0.605524 | 3_2:-72760049 | None:intergenic |
| AGAGTTCATAGTGTTTGCTG+TGG | 0.606392 | 3_2:+72762904 | Msa0423080:three_prime_UTR |
| TCTGAAGCGGTGAAGTCCGA+AGG | 0.609749 | 3_2:-72760057 | None:intergenic |
| TTTGAAGGATCGCATCACTC+AGG | 0.610572 | 3_2:+72760510 | Msa0423080:CDS |
| TGGTGAAGGAGAAAGAATGT+GGG | 0.625948 | 3_2:-72759980 | None:intergenic |
| AAATTCATGAAATTTCTAAG+TGG | 0.628182 | 3_2:+72762812 | Msa0423080:three_prime_UTR |
| AACCCAAACTTCAGATTGGG+CGG | 0.630047 | 3_2:-72762775 | None:intergenic |
| ATGCAGAAACGTGTCTTCAG+CGG | 0.637945 | 3_2:+72760140 | Msa0423080:five_prime_UTR |
| AGAGTTTGTGATGATTTGAG+TGG | 0.643998 | 3_2:-72759910 | None:intergenic |
| GTAACAGAATTAGTGTTGTG+TGG | 0.649707 | 3_2:+72760281 | Msa0423080:CDS |
| AGTTTGGGTTGAGTCAAGGA+AGG | 0.650299 | 3_2:+72762788 | Msa0423080:three_prime_UTR |
| ACACTGGTGAGTGGTGTGGG+TGG | 0.659207 | 3_2:+72760313 | Msa0423080:CDS |
| AAACCCTGATAACTCTCACA+TGG | 0.675026 | 3_2:-72760435 | None:intergenic |
| TGAGGATGAAGTAAAGCATG+TGG | 0.679275 | 3_2:+72762748 | Msa0423080:CDS |
| TGGCTTTGAGAAGAAACGGG+TGG | 0.686024 | 3_2:-72760100 | None:intergenic |
| GTGTTGTGAAGGATCTGAAG+CGG | 0.694023 | 3_2:-72760070 | None:intergenic |
| CAAAACTATCGATACAATCG+CGG | 0.700679 | 3_2:-72760218 | None:intergenic |
| AAAGTGAGAGTGTAGCATTG+TGG | 0.711944 | 3_2:-72759887 | None:intergenic |
| AACAGAATTAGTGTTGTGTG+GGG | 0.734211 | 3_2:+72760283 | Msa0423080:CDS |
| TCAAGCACAGAAGAACTCCG+AGG | 0.768660 | 3_2:+72762236 | Msa0423080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTATTACTATTAAAAAA+TGG | - | chr3_2:72760875-72760894 | None:intergenic | 10.0% |
| !! | CATATAGATATTAAAATAAA+GGG | + | chr3_2:72760911-72760930 | Msa0423080:intron | 10.0% |
| !!! | CAAAGTATTAAATATATTTT+AGG | - | chr3_2:72761114-72761133 | None:intergenic | 10.0% |
| !! | CTAAAATATATTTAATACTT+TGG | + | chr3_2:72761112-72761131 | Msa0423080:intron | 10.0% |
| !!! | ATTTTATGAAACTTAAAATT+TGG | + | chr3_2:72761146-72761165 | Msa0423080:intron | 10.0% |
| !! | TTCTTAATTAATTTATTGAA+GGG | - | chr3_2:72761505-72761524 | None:intergenic | 10.0% |
| !! | TTTCTTAATTAATTTATTGA+AGG | - | chr3_2:72761506-72761525 | None:intergenic | 10.0% |
| !!! | TTAACTACTACAATTTTTTA+AGG | + | chr3_2:72760673-72760692 | Msa0423080:intron | 15.0% |
| !!! | CCTTTATTTTAATATCTATA+TGG | - | chr3_2:72760913-72760932 | None:intergenic | 15.0% |
| !! | CCATATAGATATTAAAATAA+AGG | + | chr3_2:72760910-72760929 | Msa0423080:intron | 15.0% |
| !!! | AACAAAGATAGTTTAAAATT+CGG | + | chr3_2:72761587-72761606 | Msa0423080:intron | 15.0% |
| !! | TAAAAAACAAAGAAACATTA+TGG | - | chr3_2:72761661-72761680 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTCTTAATCATTT+AGG | - | chr3_2:72761812-72761831 | None:intergenic | 15.0% |
| !! | ATAAGTAGAGAAAATATGAA+AGG | + | chr3_2:72760367-72760386 | Msa0423080:CDS | 20.0% |
| !!! | TTAAGAAACAATTTCACTTT+TGG | + | chr3_2:72760810-72760829 | Msa0423080:intron | 20.0% |
| !! | ATTACTTATTAGCATAGTAA+TGG | + | chr3_2:72762148-72762167 | Msa0423080:intron | 20.0% |
| !!! | ATAGTAATGGATAAAAAATC+CGG | + | chr3_2:72762161-72762180 | Msa0423080:intron | 20.0% |
| !! | AAATTCATGAAATTTCTAAG+TGG | + | chr3_2:72762812-72762831 | Msa0423080:three_prime_UTR | 20.0% |
| ! | ATAATCTTTCTCTTCTTGTT+AGG | + | chr3_2:72760535-72760554 | Msa0423080:intron | 25.0% |
| ! | CATTGAAAATTGTGTAATCA+AGG | - | chr3_2:72761034-72761053 | None:intergenic | 25.0% |
| ! | TAGGGTCAACATTATAAAAT+TGG | + | chr3_2:72761527-72761546 | Msa0423080:intron | 25.0% |
| !! | GATAGTTTAAAATTCGGATT+TGG | + | chr3_2:72761593-72761612 | Msa0423080:intron | 25.0% |
| ! | AACCCTTTACAAATAACATT+GGG | - | chr3_2:72761620-72761639 | None:intergenic | 25.0% |
| ! | AAACCCTTTACAAATAACAT+TGG | - | chr3_2:72761621-72761640 | None:intergenic | 25.0% |
| ! | GTTTATTAGTAGAGACAAAT+GGG | - | chr3_2:72761905-72761924 | None:intergenic | 25.0% |
| ! | TGTTTATTAGTAGAGACAAA+TGG | - | chr3_2:72761906-72761925 | None:intergenic | 25.0% |
| ! | AATAAATGTGTCATGTTACT+CGG | - | chr3_2:72761957-72761976 | None:intergenic | 25.0% |
| ! | AGTAACATGACACATTTATT+TGG | + | chr3_2:72761957-72761976 | Msa0423080:intron | 25.0% |
| ! | TTGGTTAAAGAAGTAAGAAA+AGG | + | chr3_2:72761976-72761995 | Msa0423080:intron | 25.0% |
| ! | TAAAATGAGAGCAAATAAAC+CGG | - | chr3_2:72762095-72762114 | None:intergenic | 25.0% |
| ! | AACTTCATTATATGTATAGC+CGG | - | chr3_2:72762183-72762202 | None:intergenic | 25.0% |
| ! | CAAGAAATAAAACATTTGCA+AGG | - | chr3_2:72762541-72762560 | None:intergenic | 25.0% |
| !!! | GCAAATGTTTTATTTCTTGT+TGG | + | chr3_2:72762542-72762561 | Msa0423080:intron | 25.0% |
| ! | TACAATCAAGTCAAATTTGA+TGG | - | chr3_2:72762595-72762614 | None:intergenic | 25.0% |
| ! | GAGAAATTACTAGTAACAAT+TGG | + | chr3_2:72762938-72762957 | Msa0423080:three_prime_UTR | 25.0% |
| ! | ATTACTAGTAACAATTGGTT+AGG | + | chr3_2:72762943-72762962 | Msa0423080:three_prime_UTR | 25.0% |
| TTGTGGTAGTTGAGTATTAT+TGG | - | chr3_2:72759873-72759892 | None:intergenic | 30.0% | |
| !!! | AATTGGTTTTTGAATGTGAG+TGG | + | chr3_2:72760259-72760278 | Msa0423080:CDS | 30.0% |
| TAACAGAATTAGTGTTGTGT+GGG | + | chr3_2:72760282-72760301 | Msa0423080:CDS | 30.0% | |
| AGTAGAGAAAATATGAAAGG+TGG | + | chr3_2:72760370-72760389 | Msa0423080:CDS | 30.0% | |
| AGAAAATATGAAAGGTGGAT+TGG | + | chr3_2:72760375-72760394 | Msa0423080:CDS | 30.0% | |
| AAAGTTTGGAGAAAGAATTG+AGG | + | chr3_2:72760410-72760429 | Msa0423080:CDS | 30.0% | |
| ! | AAAATAAAGGGTGTGTTAAC+CGG | + | chr3_2:72760923-72760942 | Msa0423080:intron | 30.0% |
| ! | CTGGTTAAGGTATCTAAAAA+AGG | + | chr3_2:72760968-72760987 | Msa0423080:intron | 30.0% |
| ATTGAAACTCGCAATGAAAA+GGG | - | chr3_2:72761195-72761214 | None:intergenic | 30.0% | |
| TATTGAAACTCGCAATGAAA+AGG | - | chr3_2:72761196-72761215 | None:intergenic | 30.0% | |
| TTCATTGCGAGTTTCAATAA+AGG | + | chr3_2:72761197-72761216 | Msa0423080:intron | 30.0% | |
| TCATTGCGAGTTTCAATAAA+GGG | + | chr3_2:72761198-72761217 | Msa0423080:intron | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | + | chr3_2:72761432-72761451 | Msa0423080:intron | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | + | chr3_2:72761433-72761452 | Msa0423080:intron | 30.0% | |
| ! | GACCCAATGTTATTTGTAAA+GGG | + | chr3_2:72761615-72761634 | Msa0423080:intron | 30.0% |
| GGCAAGTAAATGTATGTATA+CGG | + | chr3_2:72761997-72762016 | Msa0423080:intron | 30.0% | |
| ! | TGAGTATTTCTATGGCTAAT+CGG | - | chr3_2:72762064-72762083 | None:intergenic | 30.0% |
| AAAATGAGAGCAAATAAACC+GGG | - | chr3_2:72762094-72762113 | None:intergenic | 30.0% | |
| ! | AGCAATGCAATCTGAAATAT+TGG | + | chr3_2:72762272-72762291 | Msa0423080:CDS | 30.0% |
| ! | AAAAGTTTTACTAGCAATGC+AGG | + | chr3_2:72762317-72762336 | Msa0423080:CDS | 30.0% |
| !! | GTTAAATAACCTGTTTTGGA+GGG | - | chr3_2:72762350-72762369 | None:intergenic | 30.0% |
| ! | AGAGGTTAAATAACCTGTTT+TGG | - | chr3_2:72762354-72762373 | None:intergenic | 30.0% |
| GTAGTGTTATATGTGTAATG+TGG | + | chr3_2:72762472-72762491 | Msa0423080:intron | 30.0% | |
| ! | GGTTACTTTAGAAAGCAAAA+TGG | - | chr3_2:72762520-72762539 | None:intergenic | 30.0% |
| !!! | TGTTTTATTTCTTGTTGGTC+CGG | + | chr3_2:72762547-72762566 | Msa0423080:intron | 30.0% |
| AGAAACTAAAAATTCAGCTG+AGG | + | chr3_2:72762730-72762749 | Msa0423080:CDS | 30.0% | |
| AATTTCTAAGTGGCAAATCT+TGG | + | chr3_2:72762822-72762841 | Msa0423080:three_prime_UTR | 30.0% | |
| ATCAACAATTCAATGTAGAC+AGG | - | chr3_2:72762864-72762883 | None:intergenic | 30.0% | |
| ! | TGAGTATTATTGGTGGCTTT+AGG | - | chr3_2:72759863-72759882 | None:intergenic | 35.0% |
| TGGTAGTTGAGTATTATTGG+TGG | - | chr3_2:72759870-72759889 | None:intergenic | 35.0% | |
| AGAGTTTGTGATGATTTGAG+TGG | - | chr3_2:72759913-72759932 | None:intergenic | 35.0% | |
| !! | TCAATGGCTTTGAGAAGAAA+CGG | - | chr3_2:72760107-72760126 | None:intergenic | 35.0% |
| CATATTACCTTCGGATTCAA+TGG | - | chr3_2:72760123-72760142 | None:intergenic | 35.0% | |
| ACGTTTCTGCATATTACCTT+CGG | - | chr3_2:72760132-72760151 | None:intergenic | 35.0% | |
| CAAAACTATCGATACAATCG+CGG | - | chr3_2:72760221-72760240 | None:intergenic | 35.0% | |
| !!! | GATTGTATCGATAGTTTTGG+CGG | + | chr3_2:72760222-72760241 | Msa0423080:CDS | 35.0% |
| !!! | ATTGTATCGATAGTTTTGGC+GGG | + | chr3_2:72760223-72760242 | Msa0423080:CDS | 35.0% |
| GTAACAGAATTAGTGTTGTG+TGG | + | chr3_2:72760281-72760300 | Msa0423080:CDS | 35.0% | |
| AACAGAATTAGTGTTGTGTG+GGG | + | chr3_2:72760283-72760302 | Msa0423080:CDS | 35.0% | |
| TTCTTGTGAAACTCAAGCTA+TGG | + | chr3_2:72760558-72760577 | Msa0423080:intron | 35.0% | |
| TTGCTTAACATGTGCTCTAA+GGG | + | chr3_2:72760833-72760852 | Msa0423080:intron | 35.0% | |
| CATTGCGAGTTTCAATAAAG+GGG | + | chr3_2:72761199-72761218 | Msa0423080:intron | 35.0% | |
| ! | GGACCCAATGTTATTTGTAA+AGG | + | chr3_2:72761614-72761633 | Msa0423080:intron | 35.0% |
| ATTAGTAGAGACAAATGGGT+GGG | - | chr3_2:72761901-72761920 | None:intergenic | 35.0% | |
| TATTAGTAGAGACAAATGGG+TGG | - | chr3_2:72761902-72761921 | None:intergenic | 35.0% | |
| ! | GGTGATTGTGAGTATTTCTA+TGG | - | chr3_2:72762072-72762091 | None:intergenic | 35.0% |
| AAATGAGAGCAAATAAACCG+GGG | - | chr3_2:72762093-72762112 | None:intergenic | 35.0% | |
| ! | GCAATCTGAAATATTGGAGA+AGG | + | chr3_2:72762278-72762297 | Msa0423080:CDS | 35.0% |
| !! | GGTTAAATAACCTGTTTTGG+AGG | - | chr3_2:72762351-72762370 | None:intergenic | 35.0% |
| AAATACTATGAGATGTGCAG+AGG | - | chr3_2:72762372-72762391 | None:intergenic | 35.0% | |
| GCTCTCTCTAATATATTTCG+TGG | + | chr3_2:72762494-72762513 | Msa0423080:intron | 35.0% | |
| !!! | GTTTTATTTCTTGTTGGTCC+GGG | + | chr3_2:72762548-72762567 | Msa0423080:intron | 35.0% |
| !!! | CTTTGACTCTTTTTTCATCC+CGG | - | chr3_2:72762569-72762588 | None:intergenic | 35.0% |
| GTAGACAGGAAGAAAGAATA+TGG | - | chr3_2:72762850-72762869 | None:intergenic | 35.0% | |
| !! | ATAGTGTTTGCTGTGGATAT+AGG | + | chr3_2:72762911-72762930 | Msa0423080:three_prime_UTR | 35.0% |
| ! | AAAGTGAGAGTGTAGCATTG+TGG | - | chr3_2:72759890-72759909 | None:intergenic | 40.0% |
| TGGTGAAGGAGAAAGAATGT+GGG | - | chr3_2:72759983-72760002 | None:intergenic | 40.0% | |
| !! | TTGGTTTGGAGTTGGAAAGA+AGG | - | chr3_2:72760021-72760040 | None:intergenic | 40.0% |
| GTGGATATTTCGTGTTGTGA+AGG | - | chr3_2:72760084-72760103 | None:intergenic | 40.0% | |
| !! | CAATGGCTTTGAGAAGAAAC+GGG | - | chr3_2:72760106-72760125 | None:intergenic | 40.0% |
| TTGACTCTCTTCTTTCGAGA+TGG | + | chr3_2:72760174-72760193 | Msa0423080:exon | 40.0% | |
| !! | CGCGATTGTATCGATAGTTT+TGG | + | chr3_2:72760219-72760238 | Msa0423080:CDS | 40.0% |
| GGTAGAGAGGATTGAAAGTT+TGG | + | chr3_2:72760396-72760415 | Msa0423080:CDS | 40.0% | |
| AAACCCTGATAACTCTCACA+TGG | - | chr3_2:72760438-72760457 | None:intergenic | 40.0% | |
| ATGCTGAGAAATTGGGGAAA+AGG | + | chr3_2:72760467-72760486 | Msa0423080:CDS | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr3_2:72760698-72760717 | Msa0423080:intron | 40.0% |
| !! | CTTCTTAACTTGTGCCTTGA+GGG | - | chr3_2:72760715-72760734 | None:intergenic | 40.0% |
| !! | ACTTCTTAACTTGTGCCTTG+AGG | - | chr3_2:72760716-72760735 | None:intergenic | 40.0% |
| GTTGCTTAACATGTGCTCTA+AGG | + | chr3_2:72760832-72760851 | Msa0423080:intron | 40.0% | |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr3_2:72761225-72761244 | Msa0423080:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr3_2:72761226-72761245 | Msa0423080:intron | 40.0% |
| GACTACTTCTTTCCCATTCA+GGG | - | chr3_2:72761241-72761260 | None:intergenic | 40.0% | |
| TGACTACTTCTTTCCCATTC+AGG | - | chr3_2:72761242-72761261 | None:intergenic | 40.0% | |
| GCTAACAGAGTCTACATTCA+GGG | - | chr3_2:72761301-72761320 | None:intergenic | 40.0% | |
| TCGGGGACTAAATTGACTAA+CGG | + | chr3_2:72761357-72761376 | Msa0423080:intron | 40.0% | |
| AGTCAGTTTAGTCCCTGAAT+AGG | - | chr3_2:72761479-72761498 | None:intergenic | 40.0% | |
| AGTCTCAATGTGCAATTGCA+CGG | - | chr3_2:72761702-72761721 | None:intergenic | 40.0% | |
| ACTCGTAACACAAGTGATGA+AGG | - | chr3_2:72761835-72761854 | None:intergenic | 40.0% | |
| TCATCACTTGTGTTACGAGT+TGG | + | chr3_2:72761835-72761854 | Msa0423080:intron | 40.0% | |
| CACAACTCCTTGTAAAGTAC+TGG | + | chr3_2:72761927-72761946 | Msa0423080:intron | 40.0% | |
| CGGTATACCAGTACTTTACA+AGG | - | chr3_2:72761937-72761956 | None:intergenic | 40.0% | |
| GCTAATCGGCACAATATAGT+AGG | - | chr3_2:72762050-72762069 | None:intergenic | 40.0% | |
| AGAAATACTCACAATCACCC+CGG | + | chr3_2:72762073-72762092 | Msa0423080:intron | 40.0% | |
| ! | TCTCTGTTTCTTGAAGTCTG+CGG | + | chr3_2:72762212-72762231 | Msa0423080:intron | 40.0% |
| CGGGATGAAAAAAGAGTCAA+AGG | + | chr3_2:72762567-72762586 | Msa0423080:intron | 40.0% | |
| TTGTATCTGTACATTCGTGC+AGG | + | chr3_2:72762610-72762629 | Msa0423080:intron | 40.0% | |
| TTGATCTGATTCTCTCGCTT+GGG | + | chr3_2:72762651-72762670 | Msa0423080:CDS | 40.0% | |
| GAAAACCAATTCCAAAGTCG+TGG | + | chr3_2:72762692-72762711 | Msa0423080:CDS | 40.0% | |
| TGAGGATGAAGTAAAGCATG+TGG | + | chr3_2:72762748-72762767 | Msa0423080:CDS | 40.0% | |
| CTCAACCCAAACTTCAGATT+GGG | - | chr3_2:72762781-72762800 | None:intergenic | 40.0% | |
| ACTCAACCCAAACTTCAGAT+TGG | - | chr3_2:72762782-72762801 | None:intergenic | 40.0% | |
| ! | AGAGTTCATAGTGTTTGCTG+TGG | + | chr3_2:72762904-72762923 | Msa0423080:three_prime_UTR | 40.0% |
| !! | GTTTGCTGTGGATATAGGTT+AGG | + | chr3_2:72762916-72762935 | Msa0423080:three_prime_UTR | 40.0% |
| TAGGTAGCTGGAAGAAGCAA+TGG | - | chr3_2:72759844-72759863 | None:intergenic | 45.0% | |
| !! | TATTGGTGGCTTTAGGTAGC+TGG | - | chr3_2:72759856-72759875 | None:intergenic | 45.0% |
| TGAAGGAGAAAGAATGTGGG+AGG | - | chr3_2:72759980-72759999 | None:intergenic | 45.0% | |
| GTGGTGAAGGAGAAAGAATG+TGG | - | chr3_2:72759984-72760003 | None:intergenic | 45.0% | |
| ! | GTTTGGAGTTGGAAAGAAGG+TGG | - | chr3_2:72760018-72760037 | None:intergenic | 45.0% |
| !! | TTCGGAGTTTGGTTTGGAGT+TGG | - | chr3_2:72760029-72760048 | None:intergenic | 45.0% |
| TTGAGGTTCGGAGTTTGGTT+TGG | - | chr3_2:72760035-72760054 | None:intergenic | 45.0% | |
| GTGTTGTGAAGGATCTGAAG+CGG | - | chr3_2:72760073-72760092 | None:intergenic | 45.0% | |
| CTCAAAGCCATTGAATCCGA+AGG | + | chr3_2:72760113-72760132 | Msa0423080:five_prime_UTR | 45.0% | |
| ATGCAGAAACGTGTCTTCAG+CGG | + | chr3_2:72760140-72760159 | Msa0423080:five_prime_UTR | 45.0% | |
| !!! | TCGATAGTTTTGGCGGGAAA+TGG | + | chr3_2:72760229-72760248 | Msa0423080:CDS | 45.0% |
| CGGGAAATGGATCGAAGAAT+TGG | + | chr3_2:72760242-72760261 | Msa0423080:CDS | 45.0% | |
| !! | TGAAAGGTGGATTGGTAGAG+AGG | + | chr3_2:72760383-72760402 | Msa0423080:CDS | 45.0% |
| GAGCCATGTGAGAGTTATCA+GGG | + | chr3_2:72760432-72760451 | Msa0423080:CDS | 45.0% | |
| !! | GAGTTATCAGGGTTTTGTCG+AGG | + | chr3_2:72760443-72760462 | Msa0423080:CDS | 45.0% |
| TCGAGGCATGCTGAGAAATT+GGG | + | chr3_2:72760460-72760479 | Msa0423080:CDS | 45.0% | |
| TCGTAATCGCTACGCTTTGA+AGG | + | chr3_2:72760495-72760514 | Msa0423080:CDS | 45.0% | |
| TTTGAAGGATCGCATCACTC+AGG | + | chr3_2:72760510-72760529 | Msa0423080:CDS | 45.0% | |
| TTGCTTCCTTAACCAGTGCT+CGG | + | chr3_2:72761069-72761088 | Msa0423080:intron | 45.0% | |
| GAAACTCGCAATGAAAAGGG+AGG | - | chr3_2:72761192-72761211 | None:intergenic | 45.0% | |
| GGCTAACAGAGTCTACATTC+AGG | - | chr3_2:72761302-72761321 | None:intergenic | 45.0% | |
| AGACTCTGTTAGCCAATTCC+AGG | + | chr3_2:72761308-72761327 | Msa0423080:intron | 45.0% | |
| GACTCTGTTAGCCAATTCCA+GGG | + | chr3_2:72761309-72761328 | Msa0423080:intron | 45.0% | |
| ! | GTCACTTTAGTCCCTGGAAT+TGG | - | chr3_2:72761323-72761342 | None:intergenic | 45.0% |
| ACTAACGGAGTCTGCATTCA+GGG | + | chr3_2:72761372-72761391 | Msa0423080:intron | 45.0% | |
| TCTGCATTCAGGGACTAAAG+TGG | + | chr3_2:72761382-72761401 | Msa0423080:intron | 45.0% | |
| ! | TGGCGACTCTTTTCCTATTC+AGG | + | chr3_2:72761463-72761482 | Msa0423080:intron | 45.0% |
| ! | GGCGACTCTTTTCCTATTCA+GGG | + | chr3_2:72761464-72761483 | Msa0423080:intron | 45.0% |
| TCAATGTGCAATTGCACGGA+AGG | - | chr3_2:72761698-72761717 | None:intergenic | 45.0% | |
| GGTAATCATCCCTCCAAAAC+AGG | + | chr3_2:72762338-72762357 | Msa0423080:intron | 45.0% | |
| CTTGATCTGATTCTCTCGCT+TGG | + | chr3_2:72762650-72762669 | Msa0423080:CDS | 45.0% | |
| TATCTTGCTCTCCACGACTT+TGG | - | chr3_2:72762706-72762725 | None:intergenic | 45.0% | |
| AACCCAAACTTCAGATTGGG+CGG | - | chr3_2:72762778-72762797 | None:intergenic | 45.0% | |
| !! | CTGAAGTTTGGGTTGAGTCA+AGG | + | chr3_2:72762784-72762803 | Msa0423080:exon | 45.0% |
| !! | AGTTTGGGTTGAGTCAAGGA+AGG | + | chr3_2:72762788-72762807 | Msa0423080:three_prime_UTR | 45.0% |
| !! | TATTATTACTATTAAAAAAT+GGG | - | chr3_2:72760874-72760893 | None:intergenic | 5.0% |
| !! | AATAAATTAATTAAGAAATT+AGG | + | chr3_2:72761508-72761527 | Msa0423080:intron | 5.0% |
| !! | ATAAATTAATTAAGAAATTA+GGG | + | chr3_2:72761509-72761528 | Msa0423080:intron | 5.0% |
| AGAAAGAATGTGGGAGGAGG+CGG | - | chr3_2:72759974-72759993 | None:intergenic | 50.0% | |
| AGGAGAAAGAATGTGGGAGG+AGG | - | chr3_2:72759977-72759996 | None:intergenic | 50.0% | |
| TGGAGTTGGAAAGAAGGTGG+CGG | - | chr3_2:72760015-72760034 | None:intergenic | 50.0% | |
| AGGAGTTGAGGTTCGGAGTT+TGG | - | chr3_2:72760040-72760059 | None:intergenic | 50.0% | |
| ACTCCGAACCTCAACTCCTT+CGG | + | chr3_2:72760041-72760060 | Msa0423080:five_prime_UTR | 50.0% | |
| AGTCCGAAGGAGTTGAGGTT+CGG | - | chr3_2:72760047-72760066 | None:intergenic | 50.0% | |
| !! | TGGCTTTGAGAAGAAACGGG+TGG | - | chr3_2:72760103-72760122 | None:intergenic | 50.0% |
| !! | TGTGTGGGGAGTTTTGACAC+TGG | + | chr3_2:72760297-72760316 | Msa0423080:CDS | 50.0% |
| !! | GGAGTTTTGACACTGGTGAG+TGG | + | chr3_2:72760304-72760323 | Msa0423080:CDS | 50.0% |
| TTTGACACTGGTGAGTGGTG+TGG | + | chr3_2:72760309-72760328 | Msa0423080:CDS | 50.0% | |
| TTGACACTGGTGAGTGGTGT+GGG | + | chr3_2:72760310-72760329 | Msa0423080:CDS | 50.0% | |
| GGAGCCATGTGAGAGTTATC+AGG | + | chr3_2:72760431-72760450 | Msa0423080:CDS | 50.0% | |
| GTCGAGGCATGCTGAGAAAT+TGG | + | chr3_2:72760459-72760478 | Msa0423080:CDS | 50.0% | |
| CGAGGCATGCTGAGAAATTG+GGG | + | chr3_2:72760461-72760480 | Msa0423080:CDS | 50.0% | |
| TGCTTCCTTAACCAGTGCTC+GGG | + | chr3_2:72761070-72761089 | Msa0423080:intron | 50.0% | |
| ! | TCGTCAGTCACTTTAGTCCC+TGG | - | chr3_2:72761329-72761348 | None:intergenic | 50.0% |
| GTGACTGACGAGTCTACGTT+CGG | + | chr3_2:72761338-72761357 | Msa0423080:intron | 50.0% | |
| TGACTGACGAGTCTACGTTC+GGG | + | chr3_2:72761339-72761358 | Msa0423080:intron | 50.0% | |
| GACTAACGGAGTCTGCATTC+AGG | + | chr3_2:72761371-72761390 | Msa0423080:intron | 50.0% | |
| TCAAGCACAGAAGAACTCCG+AGG | + | chr3_2:72762236-72762255 | Msa0423080:CDS | 50.0% | |
| TGCTAGAGCTCTTGTAGCCT+CGG | - | chr3_2:72762256-72762275 | None:intergenic | 50.0% | |
| ATTCTCTCGCTTGGGAAGTC+TGG | + | chr3_2:72762659-72762678 | Msa0423080:CDS | 50.0% | |
| TTGGGAAGTCTGGTAAGCTG+TGG | + | chr3_2:72762669-72762688 | Msa0423080:CDS | 50.0% | |
| TGGGAAGTCTGGTAAGCTGT+GGG | + | chr3_2:72762670-72762689 | Msa0423080:CDS | 50.0% | |
| !! | GCTCTCCACGACTTTGGAAT+TGG | - | chr3_2:72762700-72762719 | None:intergenic | 50.0% |
| ! | AGACCGCCCAATCTGAAGTT+TGG | + | chr3_2:72762772-72762791 | Msa0423080:exon | 50.0% |
| ! | GACCGCCCAATCTGAAGTTT+GGG | + | chr3_2:72762773-72762792 | Msa0423080:exon | 50.0% |
| GGAGTTGGAAAGAAGGTGGC+GGG | - | chr3_2:72760014-72760033 | None:intergenic | 55.0% | |
| GGTGAAGTCCGAAGGAGTTG+AGG | - | chr3_2:72760052-72760071 | None:intergenic | 55.0% | |
| ! | TCTGAAGCGGTGAAGTCCGA+AGG | - | chr3_2:72760060-72760079 | None:intergenic | 55.0% |
| GCTTCCTTAACCAGTGCTCG+GGG | + | chr3_2:72761071-72761090 | Msa0423080:intron | 55.0% | |
| CTTCCTTAACCAGTGCTCGG+GGG | + | chr3_2:72761072-72761091 | Msa0423080:intron | 55.0% | |
| GACTGACGAGTCTACGTTCG+GGG | + | chr3_2:72761340-72761359 | Msa0423080:intron | 55.0% | |
| !! | AAAGAAGGTGGCGGGAGCAG+TGG | - | chr3_2:72760006-72760025 | None:intergenic | 60.0% |
| ACACTGGTGAGTGGTGTGGG+TGG | + | chr3_2:72760313-72760332 | Msa0423080:CDS | 60.0% | |
| GTGTGGGTGGTGCGTGGATA+CGG | + | chr3_2:72760326-72760345 | Msa0423080:CDS | 60.0% | |
| TGAGTGGTGTGGGTGGTGCG+TGG | + | chr3_2:72760320-72760339 | Msa0423080:CDS | 65.0% | |
| GTGGTGCGTGGATACGGACG+CGG | + | chr3_2:72760332-72760351 | Msa0423080:CDS | 65.0% | |
| CGTGGATACGGACGCGGCAA+TGG | + | chr3_2:72760338-72760357 | Msa0423080:CDS | 65.0% | |
| GGATACGGACGCGGCAATGG+AGG | + | chr3_2:72760341-72760360 | Msa0423080:CDS | 65.0% | |
| GGGTGTGTTAACCGGTGCCC+CGG | + | chr3_2:72760931-72760950 | Msa0423080:intron | 65.0% | |
| GGTGTGTTAACCGGTGCCCC+GGG | + | chr3_2:72760932-72760951 | Msa0423080:intron | 65.0% | |
| GTGTGTTAACCGGTGCCCCG+GGG | + | chr3_2:72760933-72760952 | Msa0423080:intron | 65.0% | |
| !! | GCACTGGGGGGCACTGGTTA+AGG | + | chr3_2:72760955-72760974 | Msa0423080:intron | 65.0% |
| !! | GTGCCCCCGAGCACTGGTTA+AGG | - | chr3_2:72761078-72761097 | None:intergenic | 65.0% |
| ! | TAACCAGTGCTCGGGGGCAC+TGG | + | chr3_2:72761078-72761097 | Msa0423080:intron | 65.0% |
| TAACCAGTGCCCCCGAGCAC+TGG | - | chr3_2:72761084-72761103 | None:intergenic | 65.0% | |
| ! | GGCGGGAGCAGTGGTGGTGA+AGG | - | chr3_2:72759997-72760016 | None:intergenic | 70.0% |
| !! | GAAGGTGGCGGGAGCAGTGG+TGG | - | chr3_2:72760003-72760022 | None:intergenic | 70.0% |
| TAACCGGTGCCCCGGGGCAC+TGG | + | chr3_2:72760939-72760958 | Msa0423080:intron | 75.0% | |
| ! | AACCGGTGCCCCGGGGCACT+GGG | + | chr3_2:72760940-72760959 | Msa0423080:intron | 75.0% |
| ACCAGTGCCCCCCAGTGCCC+CGG | - | chr3_2:72760953-72760972 | None:intergenic | 75.0% | |
| !!! | ACCGGTGCCCCGGGGCACTG+GGG | + | chr3_2:72760941-72760960 | Msa0423080:intron | 80.0% |
| ! | CAGTGCCCCCCAGTGCCCCG+GGG | - | chr3_2:72760951-72760970 | None:intergenic | 80.0% |
| ! | CCAGTGCCCCCCAGTGCCCC+GGG | - | chr3_2:72760952-72760971 | None:intergenic | 80.0% |
| ! | CCCCCAGTGCCCCGGGGCAC+CGG | - | chr3_2:72760945-72760964 | None:intergenic | 85.0% |
| !!! | CCGGTGCCCCGGGGCACTGG+GGG | + | chr3_2:72760942-72760961 | Msa0423080:intron | 85.0% |
| !!! | CGGTGCCCCGGGGCACTGGG+GGG | + | chr3_2:72760943-72760962 | Msa0423080:intron | 85.0% |
| !!! | CCCGGGGCACTGGGGGGCAC+TGG | + | chr3_2:72760949-72760968 | Msa0423080:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 72759830 | 72762979 | 72759830 | ID=Msa0423080;Name=Msa0423080 |
| chr3_2 | mRNA | 72759830 | 72762979 | 72759830 | ID=Msa0423080-mRNA-1;Parent=Msa0423080;Name=Msa0423080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=363|1|1|1|1|1|3|192|201 |
| chr3_2 | exon | 72759830 | 72760531 | 72759830 | ID=Msa0423080-mRNA-1:exon:18001;Parent=Msa0423080-mRNA-1 |
| chr3_2 | exon | 72762228 | 72762338 | 72762228 | ID=Msa0423080-mRNA-1:exon:18002;Parent=Msa0423080-mRNA-1 |
| chr3_2 | exon | 72762632 | 72762979 | 72762632 | ID=Msa0423080-mRNA-1:exon:18003;Parent=Msa0423080-mRNA-1 |
| chr3_2 | five_prime_UTR | 72759830 | 72760192 | 72759830 | ID=Msa0423080-mRNA-1:five_prime_utr;Parent=Msa0423080-mRNA-1 |
| chr3_2 | CDS | 72760193 | 72760531 | 72760193 | ID=Msa0423080-mRNA-1:cds;Parent=Msa0423080-mRNA-1 |
| chr3_2 | CDS | 72762228 | 72762338 | 72762228 | ID=Msa0423080-mRNA-1:cds;Parent=Msa0423080-mRNA-1 |
| chr3_2 | CDS | 72762632 | 72762787 | 72762632 | ID=Msa0423080-mRNA-1:cds;Parent=Msa0423080-mRNA-1 |
| chr3_2 | three_prime_UTR | 72762788 | 72762979 | 72762788 | ID=Msa0423080-mRNA-1:three_prime_utr;Parent=Msa0423080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
