Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435500 | XP_003601932.2 | 90.530 | 264 | 25 | 0 | 1 | 264 | 1 | 264 | 4.59e-149 | 428 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435500 | G7J3P8 | 90.530 | 264 | 25 | 0 | 1 | 264 | 1 | 264 | 2.19e-149 | 428 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1380030 | Msa1435500 | 0.846048 | 2.773078e-59 | -8.615850e-47 |
| Msa0423080 | Msa1435500 | 0.867085 | 1.774168e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435500 | MtrunA17_Chr3g0123831 | 90.530 | 264 | 25 | 0 | 1 | 264 | 1 | 264 | 4.22e-153 | 428 |
| Msa1435500 | MtrunA17_Chr8g0381861 | 46.715 | 274 | 106 | 10 | 20 | 272 | 25 | 279 | 8.80e-49 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435500 | AT5G65250.1 | 50.761 | 197 | 90 | 3 | 59 | 252 | 79 | 271 | 1.45e-49 | 166 |
Find 93 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGAGGCATGCTGAGAAAT+TGG | 0.207238 | tig0027706:-25708 | Msa1435500:CDS |
| GGTAGAGAGGATTGAAAGTT+TGG | 0.218905 | tig0027706:-25771 | Msa1435500:CDS |
| AGACCGCCCAATCTGAAGTT+TGG | 0.306522 | tig0027706:-23384 | Msa1435500:exon |
| AGCAATGCAATCTGAAATAT+TGG | 0.309578 | tig0027706:-23885 | Msa1435500:CDS |
| CGCGATTGTATCGATAGTTT+TGG | 0.332751 | tig0027706:-25951 | Msa1435500:CDS |
| TTGTGGTAGTTGAGTATTAT+TGG | 0.333371 | tig0027706:+26301 | None:intergenic |
| GGAGCCATGTGAGAGTTATC+AGG | 0.333603 | tig0027706:-25736 | Msa1435500:CDS |
| GCTCTCCACGACTTTGGAAT+TGG | 0.336434 | tig0027706:+23459 | None:intergenic |
| AGGAGTTGAGGTTCGGAGTT+TGG | 0.346257 | tig0027706:+26134 | None:intergenic |
| TCGAGGCATGCTGAGAAATT+GGG | 0.352597 | tig0027706:-25707 | Msa1435500:CDS |
| CGGGAAATGGATCGAAGAAT+TGG | 0.361905 | tig0027706:-25928 | Msa1435500:CDS |
| CATATTACCTTCGGATTCAA+TGG | 0.368098 | tig0027706:+26051 | None:intergenic |
| TCGTAATCGCTACGCTTTGA+AGG | 0.374795 | tig0027706:-25672 | Msa1435500:CDS |
| TTGAGGTTCGGAGTTTGGTT+TGG | 0.376745 | tig0027706:+26139 | None:intergenic |
| TGACTCTCTTCTTTCGAAGA+TGG | 0.393726 | tig0027706:-25996 | Msa1435500:CDS |
| GTAGACAGGAAGAAAGAATA+TGG | 0.394176 | tig0027706:+23309 | None:intergenic |
| AATTTCTAAGTGGCAAATCT+TGG | 0.406249 | tig0027706:-23334 | Msa1435500:three_prime_UTR |
| TATCTTGCTCTCCACGACTT+TGG | 0.415944 | tig0027706:+23453 | None:intergenic |
| GACCGCCCAATCTGAAGTTT+GGG | 0.417089 | tig0027706:-23383 | Msa1435500:exon |
| ATTCTCTCGCTTGGGAAGTC+TGG | 0.421182 | tig0027706:-23497 | Msa1435500:CDS |
| TTCGGAGTTTGGTTTGGAGT+TGG | 0.422822 | tig0027706:+26145 | None:intergenic |
| TATTGGTGGCTTTAGGTAGC+TGG | 0.422937 | tig0027706:+26318 | None:intergenic |
| AGAAAGAATGTGGGAGGAGG+CGG | 0.429987 | tig0027706:+26200 | None:intergenic |
| ATTACTAGTAACAATTGGTT+AGG | 0.434786 | tig0027706:-23213 | Msa1435500:three_prime_UTR |
| GAGAAATTACTAGTAACAAT+TGG | 0.437810 | tig0027706:-23218 | Msa1435500:three_prime_UTR |
| ATAGTGTTTGCTGTCGATAT+AGG | 0.438651 | tig0027706:-23245 | Msa1435500:three_prime_UTR |
| CTCAACCCAAACTTCAGATT+GGG | 0.439223 | tig0027706:+23378 | None:intergenic |
| TGAGTATTATTGGTGGCTTT+AGG | 0.442395 | tig0027706:+26311 | None:intergenic |
| TTGATCTGATTCTCTCGCTT+GGG | 0.444939 | tig0027706:-23505 | Msa1435500:CDS |
| ACTCAACCCAAACTTCAGAT+TGG | 0.446259 | tig0027706:+23377 | None:intergenic |
| CTTGATCTGATTCTCTCGCT+TGG | 0.446445 | tig0027706:-23506 | Msa1435500:CDS |
| ACGTTTCTGCATATTACCTT+CGG | 0.457187 | tig0027706:+26042 | None:intergenic |
| TGCTAGAGCTCTTGTAGCCT+CGG | 0.462063 | tig0027706:+23904 | None:intergenic |
| ATGCTGAGAAATTGGGGAAA+AGG | 0.467269 | tig0027706:-25700 | Msa1435500:CDS |
| GTTTGCTGTCGATATAGGTT+AGG | 0.469191 | tig0027706:-23240 | Msa1435500:three_prime_UTR |
| TCAATGGCTTTGAGAAGAAA+CGG | 0.473350 | tig0027706:+26067 | None:intergenic |
| TTGTGGTTGGTGCGTGGATA+CGG | 0.480500 | tig0027706:-25841 | Msa1435500:CDS |
| AGAAAATATGAAAGGTGGAT+TGG | 0.482567 | tig0027706:-25792 | Msa1435500:CDS |
| TTGGTTAGGACAGTATCAAT+TGG | 0.491328 | tig0027706:-23199 | Msa1435500:three_prime_UTR |
| TTGGTTTGGAGTTGGAAAGA+AGG | 0.491483 | tig0027706:+26153 | None:intergenic |
| ACTCCGAACCTCAACTCCTT+CGG | 0.493147 | tig0027706:-26130 | Msa1435500:CDS |
| CAATGGCTTTGAGAAGAAAC+GGG | 0.493308 | tig0027706:+26068 | None:intergenic |
| TGAAAGGTGGATTGGTAGAG+AGG | 0.494701 | tig0027706:-25784 | Msa1435500:CDS |
| AAAGTTTGGAGAAAGAATTG+AGG | 0.499148 | tig0027706:-25757 | Msa1435500:CDS |
| GGCGGGAGCAGTGGTGGTGA+AGG | 0.501438 | tig0027706:+26177 | None:intergenic |
| ATCAACAATTCAATGTAGAC+AGG | 0.509567 | tig0027706:+23295 | None:intergenic |
| CTGAAGTTTGGGTTGAGTCA+AGG | 0.524234 | tig0027706:-23372 | Msa1435500:exon |
| GGAGTTGGAAAGAAGGTGGC+GGG | 0.524988 | tig0027706:+26160 | None:intergenic |
| CGTGGATACGGACGCGGCAA+TGG | 0.527112 | tig0027706:-25829 | Msa1435500:CDS |
| GACACTGGTGAGTGGTGTTG+TGG | 0.529538 | tig0027706:-25858 | Msa1435500:CDS |
| AGGAGAAAGAATGTGGGAGG+AGG | 0.529831 | tig0027706:+26197 | None:intergenic |
| AAAGAAGGTGGCGGGAGCAG+TGG | 0.534925 | tig0027706:+26168 | None:intergenic |
| CTGGTGAGTGGTGTTGTGGT+TGG | 0.538436 | tig0027706:-25854 | Msa1435500:CDS |
| AGTAGAGAAAATATGAAAGG+TGG | 0.546819 | tig0027706:-25797 | Msa1435500:CDS |
| AGTCCGAAGGAGTTGAGGTT+CGG | 0.548437 | tig0027706:+26127 | None:intergenic |
| GCAATCTGAAATATTGGAGA+AGG | 0.554196 | tig0027706:-23879 | Msa1435500:CDS |
| GTTTGGAGTTGGAAAGAAGG+TGG | 0.554584 | tig0027706:+26156 | None:intergenic |
| GTGGATATTTCGTGTTGTGA+AGG | 0.555229 | tig0027706:+26090 | None:intergenic |
| GAAGGTGGCGGGAGCAGTGG+TGG | 0.556157 | tig0027706:+26171 | None:intergenic |
| TGGAGTTGGAAAGAAGGTGG+CGG | 0.558091 | tig0027706:+26159 | None:intergenic |
| TGGTAGTTGAGTATTATTGG+TGG | 0.559719 | tig0027706:+26304 | None:intergenic |
| ATAAGTAGAGAAAATATGAA+AGG | 0.568186 | tig0027706:-25800 | Msa1435500:CDS |
| CGAGGCATGCTGAGAAATTG+GGG | 0.575139 | tig0027706:-25706 | Msa1435500:CDS |
| GAGCCATGTGAGAGTTATCA+GGG | 0.576135 | tig0027706:-25735 | Msa1435500:CDS |
| CTCAAAGCCATTGAATCCGA+AGG | 0.582277 | tig0027706:-26058 | Msa1435500:CDS |
| TTGGTGCGTGGATACGGACG+CGG | 0.584140 | tig0027706:-25835 | Msa1435500:CDS |
| GTGGTGAAGGAGAAAGAATG+TGG | 0.585252 | tig0027706:+26190 | None:intergenic |
| TAACAGAATTAGTGTTGTGT+GGG | 0.586185 | tig0027706:-25888 | Msa1435500:CDS |
| TTGGGAAGTCTGGTAAGCTG+TGG | 0.588362 | tig0027706:-23487 | Msa1435500:CDS |
| GGATACGGACGCGGCAATGG+AGG | 0.597439 | tig0027706:-25826 | Msa1435500:CDS |
| TGGGAAGTCTGGTAAGCTGT+GGG | 0.598835 | tig0027706:-23486 | Msa1435500:CDS |
| TGAAGGAGAAAGAATGTGGG+AGG | 0.602785 | tig0027706:+26194 | None:intergenic |
| TAGGTAGCTGGAAGAAGCAA+TGG | 0.604502 | tig0027706:+26330 | None:intergenic |
| GAAAACCAATTCCAAAGTCG+TGG | 0.604937 | tig0027706:-23464 | Msa1435500:CDS |
| GGTGAAGTCCGAAGGAGTTG+AGG | 0.605524 | tig0027706:+26122 | None:intergenic |
| TCTGAAGCGGTGAAGTCCGA+AGG | 0.609749 | tig0027706:+26114 | None:intergenic |
| TTTGAAGGATCGCATCACTC+AGG | 0.610572 | tig0027706:-25657 | Msa1435500:intron |
| GTGGTGTTGTGGTTGGTGCG+TGG | 0.613662 | tig0027706:-25847 | Msa1435500:CDS |
| TGGTGAAGGAGAAAGAATGT+GGG | 0.625948 | tig0027706:+26191 | None:intergenic |
| AAATTCATGAAATTTCTAAG+TGG | 0.628182 | tig0027706:-23344 | Msa1435500:three_prime_UTR |
| AACCCAAACTTCAGATTGGG+CGG | 0.630047 | tig0027706:+23381 | None:intergenic |
| ATGCAGAAACGTGTCTTCAG+CGG | 0.637945 | tig0027706:-26031 | Msa1435500:CDS |
| AGAGTTTGTGATGATTTGAG+TGG | 0.643998 | tig0027706:+26261 | None:intergenic |
| GTAACAGAATTAGTGTTGTG+TGG | 0.649707 | tig0027706:-25889 | Msa1435500:CDS |
| AGTTTGGGTTGAGTCAAGGA+AGG | 0.650299 | tig0027706:-23368 | Msa1435500:three_prime_UTR |
| AAACCCTGATAACTCTCACA+TGG | 0.675026 | tig0027706:+25732 | None:intergenic |
| TGAGGATGAAGTAAAGCATG+TGG | 0.679275 | tig0027706:-23408 | Msa1435500:CDS |
| TGGCTTTGAGAAGAAACGGG+TGG | 0.686024 | tig0027706:+26071 | None:intergenic |
| GTGTTGTGAAGGATCTGAAG+CGG | 0.694023 | tig0027706:+26101 | None:intergenic |
| CAAAACTATCGATACAATCG+CGG | 0.700679 | tig0027706:+25952 | None:intergenic |
| AAAGTGAGAGTGTAGCATTG+TGG | 0.711944 | tig0027706:+26284 | None:intergenic |
| AACAGAATTAGTGTTGTGTG+GGG | 0.734211 | tig0027706:-25887 | Msa1435500:CDS |
| TCAAGCACAGAAGAACTCCG+AGG | 0.768660 | tig0027706:-23921 | Msa1435500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTATTACTATTAAAAAA+TGG | + | tig0027706:24254-24273 | None:intergenic | 10.0% |
| !! | CATATAGATATTAAAATAAA+GGG | - | tig0027706:24290-24309 | Msa1435500:intron | 10.0% |
| !!! | CAAAGTATTAAATATATTTT+AGG | + | tig0027706:24495-24514 | None:intergenic | 10.0% |
| !! | CTAAAATATATTTAATACTT+TGG | - | tig0027706:24493-24512 | Msa1435500:intron | 10.0% |
| !!! | ATTTTATGAAACTTAAAATT+TGG | - | tig0027706:24527-24546 | Msa1435500:intron | 10.0% |
| !! | TTCTTAATTAATTTATTGAA+GGG | + | tig0027706:24888-24907 | None:intergenic | 10.0% |
| !! | TTTCTTAATTAATTTATTGA+AGG | + | tig0027706:24889-24908 | None:intergenic | 10.0% |
| !!! | TAACTACTACAATTTTTTTA+AGG | - | tig0027706:24048-24067 | Msa1435500:intron | 15.0% |
| !!! | CCTTTATTTTAATATCTATA+TGG | + | tig0027706:24292-24311 | None:intergenic | 15.0% |
| !! | CCATATAGATATTAAAATAA+AGG | - | tig0027706:24289-24308 | Msa1435500:intron | 15.0% |
| !!! | AACAAAGATAGTTTAAAATT+CGG | - | tig0027706:24970-24989 | Msa1435500:intron | 15.0% |
| !! | TAAAAAACAAAGAAACATTA+TGG | + | tig0027706:25044-25063 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTCTTAATCATTT+AGG | + | tig0027706:25195-25214 | None:intergenic | 15.0% |
| !! | ATAAGTAGAGAAAATATGAA+AGG | - | tig0027706:23740-23759 | Msa1435500:intron | 20.0% |
| !!! | TAAGAAACAATTTCTACTTT+TGG | - | tig0027706:24188-24207 | Msa1435500:intron | 20.0% |
| !!! | AAGAAACAATTTCTACTTTT+GGG | - | tig0027706:24189-24208 | Msa1435500:intron | 20.0% |
| !! | ATTACTTATTAGCATAGTAA+TGG | - | tig0027706:25531-25550 | Msa1435500:intron | 20.0% |
| !!! | ATAGTAATGGATAAAAAATC+CGG | - | tig0027706:25544-25563 | Msa1435500:intron | 20.0% |
| !! | AAATTCATGAAATTTCTAAG+TGG | - | tig0027706:26196-26215 | Msa1435500:CDS | 20.0% |
| ! | ATAATCTTTCTCTTCTTGTT+AGG | - | tig0027706:23908-23927 | Msa1435500:CDS | 25.0% |
| ! | CATTGAAAATTGTGTAATCA+AGG | + | tig0027706:24415-24434 | None:intergenic | 25.0% |
| ! | TAGGGTCAACATTATAAAAT+TGG | - | tig0027706:24910-24929 | Msa1435500:intron | 25.0% |
| ! | TAAAGTGCGAAATGATAAAT+TGG | - | tig0027706:24944-24963 | Msa1435500:intron | 25.0% |
| !! | GATAGTTTAAAATTCGGATT+TGG | - | tig0027706:24976-24995 | Msa1435500:intron | 25.0% |
| ! | AACCCTTTACAAATAACATT+GGG | + | tig0027706:25003-25022 | None:intergenic | 25.0% |
| ! | AAACCCTTTACAAATAACAT+TGG | + | tig0027706:25004-25023 | None:intergenic | 25.0% |
| ! | GTTTATTAGTAGAGACAAAT+GGG | + | tig0027706:25288-25307 | None:intergenic | 25.0% |
| ! | TGTTTATTAGTAGAGACAAA+TGG | + | tig0027706:25289-25308 | None:intergenic | 25.0% |
| ! | AATAAATGTGTCATGTTACT+CGG | + | tig0027706:25340-25359 | None:intergenic | 25.0% |
| ! | AGTAACATGACACATTTATT+TGG | - | tig0027706:25340-25359 | Msa1435500:intron | 25.0% |
| ! | TTGGTTAAAGAAGTAAGAAA+AGG | - | tig0027706:25359-25378 | Msa1435500:intron | 25.0% |
| ! | TAAAATGAGAGCAAATAAAC+CGG | + | tig0027706:25478-25497 | None:intergenic | 25.0% |
| ! | AACTTCATTATATGTATAGC+CGG | + | tig0027706:25566-25585 | None:intergenic | 25.0% |
| ! | CAAGAAATAAAACATTTGCA+AGG | + | tig0027706:25925-25944 | None:intergenic | 25.0% |
| !!! | GCAAATGTTTTATTTCTTGT+TGG | - | tig0027706:25926-25945 | Msa1435500:CDS | 25.0% |
| ! | TACAATCAAGTCAAATTTGA+TGG | + | tig0027706:25979-25998 | None:intergenic | 25.0% |
| ! | GAGAAATTACTAGTAACAAT+TGG | - | tig0027706:26322-26341 | Msa1435500:five_prime_UTR | 25.0% |
| ! | ATTACTAGTAACAATTGGTT+AGG | - | tig0027706:26327-26346 | Msa1435500:five_prime_UTR | 25.0% |
| TTGTGGTAGTTGAGTATTAT+TGG | + | tig0027706:23242-23261 | None:intergenic | 30.0% | |
| !!! | AATTGGTTTTTGAATGTGAG+TGG | - | tig0027706:23629-23648 | Msa1435500:intron | 30.0% |
| TAACAGAATTAGTGTTGTGT+GGG | - | tig0027706:23652-23671 | Msa1435500:intron | 30.0% | |
| AGTAGAGAAAATATGAAAGG+TGG | - | tig0027706:23743-23762 | Msa1435500:intron | 30.0% | |
| AGAAAATATGAAAGGTGGAT+TGG | - | tig0027706:23748-23767 | Msa1435500:intron | 30.0% | |
| AAAGTTTGGAGAAAGAATTG+AGG | - | tig0027706:23783-23802 | Msa1435500:intron | 30.0% | |
| AAATAAAGGGTTGTGTTAAC+CGG | - | tig0027706:24303-24322 | Msa1435500:intron | 30.0% | |
| ! | CTGGTTAAGGTATCTAAAAA+AGG | - | tig0027706:24349-24368 | Msa1435500:intron | 30.0% |
| ATTGAAACTCGCAATGAAAA+GGG | + | tig0027706:24576-24595 | None:intergenic | 30.0% | |
| TATTGAAACTCGCAATGAAA+AGG | + | tig0027706:24577-24596 | None:intergenic | 30.0% | |
| TTCATTGCGAGTTTCAATAA+AGG | - | tig0027706:24578-24597 | Msa1435500:intron | 30.0% | |
| TCATTGCGAGTTTCAATAAA+GGG | - | tig0027706:24579-24598 | Msa1435500:intron | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | - | tig0027706:24813-24832 | Msa1435500:intron | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | - | tig0027706:24814-24833 | Msa1435500:intron | 30.0% | |
| ! | GACCCAATGTTATTTGTAAA+GGG | - | tig0027706:24998-25017 | Msa1435500:intron | 30.0% |
| GGCAAGTAAATGTATGTATA+CGG | - | tig0027706:25380-25399 | Msa1435500:intron | 30.0% | |
| ! | TGAGTATTTCTATGGCTAAT+CGG | + | tig0027706:25447-25466 | None:intergenic | 30.0% |
| AAAATGAGAGCAAATAAACC+GGG | + | tig0027706:25477-25496 | None:intergenic | 30.0% | |
| ! | AGCAATGCAATCTGAAATAT+TGG | - | tig0027706:25655-25674 | Msa1435500:intron | 30.0% |
| ! | AAAAGTTTTACTAGCAATGC+AGG | - | tig0027706:25700-25719 | Msa1435500:CDS | 30.0% |
| !! | GTTAAATAACCTGTTTTGGA+GGG | + | tig0027706:25733-25752 | None:intergenic | 30.0% |
| ! | AGAGGTTAAATAACCTGTTT+TGG | + | tig0027706:25737-25756 | None:intergenic | 30.0% |
| GTAGTGTTATATGTGTAATG+TGG | - | tig0027706:25855-25874 | Msa1435500:CDS | 30.0% | |
| CTCTCTCTTAATATATTTCG+TGG | - | tig0027706:25878-25897 | Msa1435500:CDS | 30.0% | |
| ! | GGTTACTTTAGAAAGCAAAA+TGG | + | tig0027706:25904-25923 | None:intergenic | 30.0% |
| !!! | TGTTTTATTTCTTGTTGGTC+CGG | - | tig0027706:25931-25950 | Msa1435500:CDS | 30.0% |
| AGAAACTAAAAATTCAGCTG+AGG | - | tig0027706:26114-26133 | Msa1435500:CDS | 30.0% | |
| AATTTCTAAGTGGCAAATCT+TGG | - | tig0027706:26206-26225 | Msa1435500:CDS | 30.0% | |
| ATCAACAATTCAATGTAGAC+AGG | + | tig0027706:26248-26267 | None:intergenic | 30.0% | |
| ! | TGAGTATTATTGGTGGCTTT+AGG | + | tig0027706:23232-23251 | None:intergenic | 35.0% |
| TGGTAGTTGAGTATTATTGG+TGG | + | tig0027706:23239-23258 | None:intergenic | 35.0% | |
| AGAGTTTGTGATGATTTGAG+TGG | + | tig0027706:23282-23301 | None:intergenic | 35.0% | |
| !! | TCAATGGCTTTGAGAAGAAA+CGG | + | tig0027706:23476-23495 | None:intergenic | 35.0% |
| CATATTACCTTCGGATTCAA+TGG | + | tig0027706:23492-23511 | None:intergenic | 35.0% | |
| ACGTTTCTGCATATTACCTT+CGG | + | tig0027706:23501-23520 | None:intergenic | 35.0% | |
| CAAAACTATCGATACAATCG+CGG | + | tig0027706:23591-23610 | None:intergenic | 35.0% | |
| !!! | GATTGTATCGATAGTTTTGG+CGG | - | tig0027706:23592-23611 | Msa1435500:intron | 35.0% |
| !!! | ATTGTATCGATAGTTTTGGC+GGG | - | tig0027706:23593-23612 | Msa1435500:intron | 35.0% |
| GTAACAGAATTAGTGTTGTG+TGG | - | tig0027706:23651-23670 | Msa1435500:intron | 35.0% | |
| AACAGAATTAGTGTTGTGTG+GGG | - | tig0027706:23653-23672 | Msa1435500:intron | 35.0% | |
| TTCTTGTGAAACTCAAGCTA+TGG | - | tig0027706:23931-23950 | Msa1435500:CDS | 35.0% | |
| TTGCTTAACATGTGCTCTAA+GGG | - | tig0027706:24212-24231 | Msa1435500:intron | 35.0% | |
| CATTGCGAGTTTCAATAAAG+GGG | - | tig0027706:24580-24599 | Msa1435500:intron | 35.0% | |
| TTGCAATTTCTCTGCATTCA+GGG | + | tig0027706:24653-24672 | None:intergenic | 35.0% | |
| TTTGCAATTTCTCTGCATTC+AGG | + | tig0027706:24654-24673 | None:intergenic | 35.0% | |
| ! | GGACCCAATGTTATTTGTAA+AGG | - | tig0027706:24997-25016 | Msa1435500:intron | 35.0% |
| ATTAGTAGAGACAAATGGGT+GGG | + | tig0027706:25284-25303 | None:intergenic | 35.0% | |
| TATTAGTAGAGACAAATGGG+TGG | + | tig0027706:25285-25304 | None:intergenic | 35.0% | |
| ! | GGAGATTGTGAGTATTTCTA+TGG | + | tig0027706:25455-25474 | None:intergenic | 35.0% |
| AAATGAGAGCAAATAAACCG+GGG | + | tig0027706:25476-25495 | None:intergenic | 35.0% | |
| ! | GCAATCTGAAATATTGGAGA+AGG | - | tig0027706:25661-25680 | Msa1435500:CDS | 35.0% |
| !! | GGTTAAATAACCTGTTTTGG+AGG | + | tig0027706:25734-25753 | None:intergenic | 35.0% |
| AAATACTATGAGATGTGCAG+AGG | + | tig0027706:25755-25774 | None:intergenic | 35.0% | |
| !!! | GTTTTATTTCTTGTTGGTCC+GGG | - | tig0027706:25932-25951 | Msa1435500:CDS | 35.0% |
| !!! | CTTTGACTCTTTTTTCATCC+CGG | + | tig0027706:25953-25972 | None:intergenic | 35.0% |
| GTAGACAGGAAGAAAGAATA+TGG | + | tig0027706:26234-26253 | None:intergenic | 35.0% | |
| !! | ATAGTGTTTGCTGTCGATAT+AGG | - | tig0027706:26295-26314 | Msa1435500:five_prime_UTR | 35.0% |
| ! | AAAGTGAGAGTGTAGCATTG+TGG | + | tig0027706:23259-23278 | None:intergenic | 40.0% |
| TGGTGAAGGAGAAAGAATGT+GGG | + | tig0027706:23352-23371 | None:intergenic | 40.0% | |
| !! | TTGGTTTGGAGTTGGAAAGA+AGG | + | tig0027706:23390-23409 | None:intergenic | 40.0% |
| GTGGATATTTCGTGTTGTGA+AGG | + | tig0027706:23453-23472 | None:intergenic | 40.0% | |
| !! | CAATGGCTTTGAGAAGAAAC+GGG | + | tig0027706:23475-23494 | None:intergenic | 40.0% |
| TGACTCTCTTCTTTCGAAGA+TGG | - | tig0027706:23544-23563 | Msa1435500:intron | 40.0% | |
| !! | CGCGATTGTATCGATAGTTT+TGG | - | tig0027706:23589-23608 | Msa1435500:intron | 40.0% |
| GGTAGAGAGGATTGAAAGTT+TGG | - | tig0027706:23769-23788 | Msa1435500:intron | 40.0% | |
| AAACCCTGATAACTCTCACA+TGG | + | tig0027706:23811-23830 | None:intergenic | 40.0% | |
| ATGCTGAGAAATTGGGGAAA+AGG | - | tig0027706:23840-23859 | Msa1435500:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | tig0027706:24073-24092 | Msa1435500:intron | 40.0% |
| !! | CTTCTTAACTTGTGCCTTGA+GGG | + | tig0027706:24090-24109 | None:intergenic | 40.0% |
| !! | ACTTCTTAACTTGTGCCTTG+AGG | + | tig0027706:24091-24110 | None:intergenic | 40.0% |
| GTTGCTTAACATGTGCTCTA+AGG | - | tig0027706:24211-24230 | Msa1435500:intron | 40.0% | |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | tig0027706:24606-24625 | Msa1435500:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | tig0027706:24607-24626 | Msa1435500:intron | 40.0% |
| GACTACTTCTTTCCCATTCA+GGG | + | tig0027706:24622-24641 | None:intergenic | 40.0% | |
| TGACTACTTCTTTCCCATTC+AGG | + | tig0027706:24623-24642 | None:intergenic | 40.0% | |
| GCTAACAGAGTCTACATTCA+GGG | + | tig0027706:24682-24701 | None:intergenic | 40.0% | |
| TCGGGGACTAAATTGACTAA+CGG | - | tig0027706:24738-24757 | Msa1435500:intron | 40.0% | |
| AGTCAGTTTAGTCCCTGAAT+AGG | + | tig0027706:24860-24879 | None:intergenic | 40.0% | |
| AGTCTCAATGTGCAATTGCA+CGG | + | tig0027706:25085-25104 | None:intergenic | 40.0% | |
| ACTCGTAACACAAGTGATGA+AGG | + | tig0027706:25218-25237 | None:intergenic | 40.0% | |
| TCATCACTTGTGTTACGAGT+TGG | - | tig0027706:25218-25237 | Msa1435500:intron | 40.0% | |
| CACAACTCCTTGTAAAGTAC+TGG | - | tig0027706:25310-25329 | Msa1435500:intron | 40.0% | |
| CGGTATACCAGTACTTTACA+AGG | + | tig0027706:25320-25339 | None:intergenic | 40.0% | |
| GCTAATCGGCACAATATAGT+AGG | + | tig0027706:25433-25452 | None:intergenic | 40.0% | |
| AGAAATACTCACAATCTCCC+CGG | - | tig0027706:25456-25475 | Msa1435500:intron | 40.0% | |
| ! | TCTCTGTTTCTTGAAGTCTG+CGG | - | tig0027706:25595-25614 | Msa1435500:intron | 40.0% |
| CGGGATGAAAAAAGAGTCAA+AGG | - | tig0027706:25951-25970 | Msa1435500:CDS | 40.0% | |
| TTGTATCTGTACATTCGTGC+AGG | - | tig0027706:25994-26013 | Msa1435500:CDS | 40.0% | |
| TTGATCTGATTCTCTCGCTT+GGG | - | tig0027706:26035-26054 | Msa1435500:CDS | 40.0% | |
| GAAAACCAATTCCAAAGTCG+TGG | - | tig0027706:26076-26095 | Msa1435500:CDS | 40.0% | |
| TGAGGATGAAGTAAAGCATG+TGG | - | tig0027706:26132-26151 | Msa1435500:CDS | 40.0% | |
| CTCAACCCAAACTTCAGATT+GGG | + | tig0027706:26165-26184 | None:intergenic | 40.0% | |
| ACTCAACCCAAACTTCAGAT+TGG | + | tig0027706:26166-26185 | None:intergenic | 40.0% | |
| !! | GTTTGCTGTCGATATAGGTT+AGG | - | tig0027706:26300-26319 | Msa1435500:five_prime_UTR | 40.0% |
| TAGGTAGCTGGAAGAAGCAA+TGG | + | tig0027706:23213-23232 | None:intergenic | 45.0% | |
| !! | TATTGGTGGCTTTAGGTAGC+TGG | + | tig0027706:23225-23244 | None:intergenic | 45.0% |
| TGAAGGAGAAAGAATGTGGG+AGG | + | tig0027706:23349-23368 | None:intergenic | 45.0% | |
| GTGGTGAAGGAGAAAGAATG+TGG | + | tig0027706:23353-23372 | None:intergenic | 45.0% | |
| ! | GTTTGGAGTTGGAAAGAAGG+TGG | + | tig0027706:23387-23406 | None:intergenic | 45.0% |
| !! | TTCGGAGTTTGGTTTGGAGT+TGG | + | tig0027706:23398-23417 | None:intergenic | 45.0% |
| TTGAGGTTCGGAGTTTGGTT+TGG | + | tig0027706:23404-23423 | None:intergenic | 45.0% | |
| GTGTTGTGAAGGATCTGAAG+CGG | + | tig0027706:23442-23461 | None:intergenic | 45.0% | |
| CTCAAAGCCATTGAATCCGA+AGG | - | tig0027706:23482-23501 | Msa1435500:CDS | 45.0% | |
| ATGCAGAAACGTGTCTTCAG+CGG | - | tig0027706:23509-23528 | Msa1435500:CDS | 45.0% | |
| !!! | TCGATAGTTTTGGCGGGAAA+TGG | - | tig0027706:23599-23618 | Msa1435500:intron | 45.0% |
| CGGGAAATGGATCGAAGAAT+TGG | - | tig0027706:23612-23631 | Msa1435500:intron | 45.0% | |
| !! | TGAAAGGTGGATTGGTAGAG+AGG | - | tig0027706:23756-23775 | Msa1435500:intron | 45.0% |
| GAGCCATGTGAGAGTTATCA+GGG | - | tig0027706:23805-23824 | Msa1435500:intron | 45.0% | |
| !! | GAGTTATCAGGGTTTTGTCG+AGG | - | tig0027706:23816-23835 | Msa1435500:intron | 45.0% |
| TCGAGGCATGCTGAGAAATT+GGG | - | tig0027706:23833-23852 | Msa1435500:intron | 45.0% | |
| TCGTAATCGCTACGCTTTGA+AGG | - | tig0027706:23868-23887 | Msa1435500:CDS | 45.0% | |
| TTTGAAGGATCGCATCACTC+AGG | - | tig0027706:23883-23902 | Msa1435500:CDS | 45.0% | |
| TTGCTTCCTTAACCAGTGCT+CGG | - | tig0027706:24450-24469 | Msa1435500:intron | 45.0% | |
| GAAACTCGCAATGAAAAGGG+AGG | + | tig0027706:24573-24592 | None:intergenic | 45.0% | |
| GGCTAACAGAGTCTACATTC+AGG | + | tig0027706:24683-24702 | None:intergenic | 45.0% | |
| AGACTCTGTTAGCCAATTCC+AGG | - | tig0027706:24689-24708 | Msa1435500:intron | 45.0% | |
| GACTCTGTTAGCCAATTCCA+GGG | - | tig0027706:24690-24709 | Msa1435500:intron | 45.0% | |
| ! | GTCACTTTAGTCCCTGGAAT+TGG | + | tig0027706:24704-24723 | None:intergenic | 45.0% |
| ACTAACGGAGTCTGCATTCA+GGG | - | tig0027706:24753-24772 | Msa1435500:intron | 45.0% | |
| TCTGCATTCAGGGACTAAAG+TGG | - | tig0027706:24763-24782 | Msa1435500:intron | 45.0% | |
| ! | TGGCGACTCTTTTCCTATTC+AGG | - | tig0027706:24844-24863 | Msa1435500:intron | 45.0% |
| ! | GGCGACTCTTTTCCTATTCA+GGG | - | tig0027706:24845-24864 | Msa1435500:intron | 45.0% |
| TCAATGTGCAATTGCACGGA+AGG | + | tig0027706:25081-25100 | None:intergenic | 45.0% | |
| GGTAATCATCCCTCCAAAAC+AGG | - | tig0027706:25721-25740 | Msa1435500:CDS | 45.0% | |
| CTTGATCTGATTCTCTCGCT+TGG | - | tig0027706:26034-26053 | Msa1435500:CDS | 45.0% | |
| TATCTTGCTCTCCACGACTT+TGG | + | tig0027706:26090-26109 | None:intergenic | 45.0% | |
| AACCCAAACTTCAGATTGGG+CGG | + | tig0027706:26162-26181 | None:intergenic | 45.0% | |
| !! | CTGAAGTTTGGGTTGAGTCA+AGG | - | tig0027706:26168-26187 | Msa1435500:CDS | 45.0% |
| !! | AGTTTGGGTTGAGTCAAGGA+AGG | - | tig0027706:26172-26191 | Msa1435500:CDS | 45.0% |
| !! | TATTATTACTATTAAAAAAT+GGG | + | tig0027706:24253-24272 | None:intergenic | 5.0% |
| !! | AATAAATTAATTAAGAAATT+AGG | - | tig0027706:24891-24910 | Msa1435500:intron | 5.0% |
| !! | ATAAATTAATTAAGAAATTA+GGG | - | tig0027706:24892-24911 | Msa1435500:intron | 5.0% |
| AGAAAGAATGTGGGAGGAGG+CGG | + | tig0027706:23343-23362 | None:intergenic | 50.0% | |
| AGGAGAAAGAATGTGGGAGG+AGG | + | tig0027706:23346-23365 | None:intergenic | 50.0% | |
| TGGAGTTGGAAAGAAGGTGG+CGG | + | tig0027706:23384-23403 | None:intergenic | 50.0% | |
| AGGAGTTGAGGTTCGGAGTT+TGG | + | tig0027706:23409-23428 | None:intergenic | 50.0% | |
| ACTCCGAACCTCAACTCCTT+CGG | - | tig0027706:23410-23429 | Msa1435500:CDS | 50.0% | |
| AGTCCGAAGGAGTTGAGGTT+CGG | + | tig0027706:23416-23435 | None:intergenic | 50.0% | |
| !! | TGGCTTTGAGAAGAAACGGG+TGG | + | tig0027706:23472-23491 | None:intergenic | 50.0% |
| !! | TGTGTGGGGAGTTTTGACAC+TGG | - | tig0027706:23667-23686 | Msa1435500:intron | 50.0% |
| !! | GGAGTTTTGACACTGGTGAG+TGG | - | tig0027706:23674-23693 | Msa1435500:intron | 50.0% |
| ! | TTGTGGTTGGTGCGTGGATA+CGG | - | tig0027706:23699-23718 | Msa1435500:intron | 50.0% |
| GGAGCCATGTGAGAGTTATC+AGG | - | tig0027706:23804-23823 | Msa1435500:intron | 50.0% | |
| GTCGAGGCATGCTGAGAAAT+TGG | - | tig0027706:23832-23851 | Msa1435500:intron | 50.0% | |
| CGAGGCATGCTGAGAAATTG+GGG | - | tig0027706:23834-23853 | Msa1435500:intron | 50.0% | |
| TGCTTCCTTAACCAGTGCTC+GGG | - | tig0027706:24451-24470 | Msa1435500:intron | 50.0% | |
| ! | TCGTCAGTCACTTTAGTCCC+TGG | + | tig0027706:24710-24729 | None:intergenic | 50.0% |
| GTGACTGACGAGTCTACGTT+CGG | - | tig0027706:24719-24738 | Msa1435500:intron | 50.0% | |
| TGACTGACGAGTCTACGTTC+GGG | - | tig0027706:24720-24739 | Msa1435500:intron | 50.0% | |
| GACTAACGGAGTCTGCATTC+AGG | - | tig0027706:24752-24771 | Msa1435500:intron | 50.0% | |
| TCAAGCACAGAAGAACTCCG+AGG | - | tig0027706:25619-25638 | Msa1435500:intron | 50.0% | |
| TGCTAGAGCTCTTGTAGCCT+CGG | + | tig0027706:25639-25658 | None:intergenic | 50.0% | |
| ATTCTCTCGCTTGGGAAGTC+TGG | - | tig0027706:26043-26062 | Msa1435500:CDS | 50.0% | |
| TTGGGAAGTCTGGTAAGCTG+TGG | - | tig0027706:26053-26072 | Msa1435500:CDS | 50.0% | |
| TGGGAAGTCTGGTAAGCTGT+GGG | - | tig0027706:26054-26073 | Msa1435500:CDS | 50.0% | |
| !! | GCTCTCCACGACTTTGGAAT+TGG | + | tig0027706:26084-26103 | None:intergenic | 50.0% |
| ! | AGACCGCCCAATCTGAAGTT+TGG | - | tig0027706:26156-26175 | Msa1435500:CDS | 50.0% |
| ! | GACCGCCCAATCTGAAGTTT+GGG | - | tig0027706:26157-26176 | Msa1435500:CDS | 50.0% |
| GGAGTTGGAAAGAAGGTGGC+GGG | + | tig0027706:23383-23402 | None:intergenic | 55.0% | |
| GGTGAAGTCCGAAGGAGTTG+AGG | + | tig0027706:23421-23440 | None:intergenic | 55.0% | |
| ! | TCTGAAGCGGTGAAGTCCGA+AGG | + | tig0027706:23429-23448 | None:intergenic | 55.0% |
| ! | GACACTGGTGAGTGGTGTTG+TGG | - | tig0027706:23682-23701 | Msa1435500:intron | 55.0% |
| !! | CTGGTGAGTGGTGTTGTGGT+TGG | - | tig0027706:23686-23705 | Msa1435500:intron | 55.0% |
| GCTTCCTTAACCAGTGCTCG+GGG | - | tig0027706:24452-24471 | Msa1435500:intron | 55.0% | |
| CTTCCTTAACCAGTGCTCGG+GGG | - | tig0027706:24453-24472 | Msa1435500:intron | 55.0% | |
| GACTGACGAGTCTACGTTCG+GGG | - | tig0027706:24721-24740 | Msa1435500:intron | 55.0% | |
| !! | AAAGAAGGTGGCGGGAGCAG+TGG | + | tig0027706:23375-23394 | None:intergenic | 60.0% |
| !! | GTGGTGTTGTGGTTGGTGCG+TGG | - | tig0027706:23693-23712 | Msa1435500:intron | 60.0% |
| TTGGTGCGTGGATACGGACG+CGG | - | tig0027706:23705-23724 | Msa1435500:intron | 60.0% | |
| GTTGTGTTAACCGGTGCCCC+CGG | - | tig0027706:24312-24331 | Msa1435500:intron | 60.0% | |
| TTGTGTTAACCGGTGCCCCC+GGG | - | tig0027706:24313-24332 | Msa1435500:intron | 60.0% | |
| CGTGGATACGGACGCGGCAA+TGG | - | tig0027706:23711-23730 | Msa1435500:intron | 65.0% | |
| GGATACGGACGCGGCAATGG+AGG | - | tig0027706:23714-23733 | Msa1435500:intron | 65.0% | |
| TGTGTTAACCGGTGCCCCCG+GGG | - | tig0027706:24314-24333 | Msa1435500:intron | 65.0% | |
| !! | GCACTGGGGGGCACTGGTTA+AGG | - | tig0027706:24336-24355 | Msa1435500:intron | 65.0% |
| !! | GTGCCCCCGAGCACTGGTTA+AGG | + | tig0027706:24459-24478 | None:intergenic | 65.0% |
| ! | TAACCAGTGCTCGGGGGCAC+TGG | - | tig0027706:24459-24478 | Msa1435500:intron | 65.0% |
| TAACCAGTGCCCCCGAGCAC+TGG | + | tig0027706:24465-24484 | None:intergenic | 65.0% | |
| ! | GGCGGGAGCAGTGGTGGTGA+AGG | + | tig0027706:23366-23385 | None:intergenic | 70.0% |
| !! | GAAGGTGGCGGGAGCAGTGG+TGG | + | tig0027706:23372-23391 | None:intergenic | 70.0% |
| ACCAGTGCCCCCCAGTGCCC+CGG | + | tig0027706:24334-24353 | None:intergenic | 75.0% | |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | - | tig0027706:24320-24339 | Msa1435500:intron | 80.0% |
| !! | ACCGGTGCCCCCGGGGCACT+GGG | - | tig0027706:24321-24340 | Msa1435500:intron | 80.0% |
| ! | AGTGCCCCCCAGTGCCCCGG+GGG | + | tig0027706:24331-24350 | None:intergenic | 80.0% |
| ! | CAGTGCCCCCCAGTGCCCCG+GGG | + | tig0027706:24332-24351 | None:intergenic | 80.0% |
| ! | CCAGTGCCCCCCAGTGCCCC+GGG | + | tig0027706:24333-24352 | None:intergenic | 80.0% |
| !! | CCCCAGTGCCCCGGGGGCAC+CGG | + | tig0027706:24325-24344 | None:intergenic | 85.0% |
| !!! | CCGGTGCCCCCGGGGCACTG+GGG | - | tig0027706:24322-24341 | Msa1435500:intron | 85.0% |
| !!! | CGGTGCCCCCGGGGCACTGG+GGG | - | tig0027706:24323-24342 | Msa1435500:intron | 85.0% |
| !!! | GGTGCCCCCGGGGCACTGGG+GGG | - | tig0027706:24324-24343 | Msa1435500:intron | 85.0% |
| !!! | CCCGGGGCACTGGGGGGCAC+TGG | - | tig0027706:24330-24349 | Msa1435500:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027706 | gene | 23199 | 26363 | 23199 | ID=Msa1435500;Name=Msa1435500 |
| tig0027706 | mRNA | 23199 | 26363 | 23199 | ID=Msa1435500-mRNA-1;Parent=Msa1435500;Name=Msa1435500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=124|1|1|1|1|1|3|192|282 |
| tig0027706 | exon | 23199 | 23546 | 23199 | ID=Msa1435500-mRNA-1:exon:9728;Parent=Msa1435500-mRNA-1 |
| tig0027706 | exon | 23841 | 23951 | 23841 | ID=Msa1435500-mRNA-1:exon:9727;Parent=Msa1435500-mRNA-1 |
| tig0027706 | exon | 25658 | 26363 | 25658 | ID=Msa1435500-mRNA-1:exon:9726;Parent=Msa1435500-mRNA-1 |
| tig0027706 | five_prime_UTR | 26240 | 26363 | 26240 | ID=Msa1435500-mRNA-1:five_prime_utr;Parent=Msa1435500-mRNA-1 |
| tig0027706 | CDS | 25658 | 26239 | 25658 | ID=Msa1435500-mRNA-1:cds;Parent=Msa1435500-mRNA-1 |
| tig0027706 | CDS | 23841 | 23951 | 23841 | ID=Msa1435500-mRNA-1:cds;Parent=Msa1435500-mRNA-1 |
| tig0027706 | CDS | 23391 | 23546 | 23391 | ID=Msa1435500-mRNA-1:cds;Parent=Msa1435500-mRNA-1 |
| tig0027706 | three_prime_UTR | 23199 | 23390 | 23199 | ID=Msa1435500-mRNA-1:three_prime_utr;Parent=Msa1435500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
