AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0425130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425130 MtrunA17_Chr8g0340741 86.486 37 5 0 17 53 448 484 2.65e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 117 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCAATCAATTGAATTA+TGG 0.220514 3_2:+75466022 Msa0425130:three_prime_UTR
TCTCATTCTTATTACCTTGA+TGG 0.273691 3_2:+75464999 Msa0425130:CDS
TTCAGCATTTAGACCCTTAT+TGG 0.277653 3_2:-75463842 None:intergenic
CTTGAAAGATTATCGAGTTT+TGG 0.287971 3_2:+75465810 Msa0425130:three_prime_UTR
GACTCCAACTAGCAAATCTT+TGG 0.288947 3_2:+75465677 Msa0425130:CDS
ACTTGGTGCCCCTGTGTATA+AGG 0.291157 3_2:+75462909 Msa0425130:five_prime_UTR
ACTTTCTGAGAATTGTTATA+GGG 0.300909 3_2:+75461394 Msa0425130:five_prime_UTR
TCATTGCATGTTGCTTCAAT+TGG 0.303065 3_2:-75460768 None:intergenic
AAGCAGCAAAAGAGCTTAAC+TGG 0.304895 3_2:+75461989 Msa0425130:five_prime_UTR
GTTTCCGTTAATGATTGTTT+TGG 0.312248 3_2:+75465977 Msa0425130:three_prime_UTR
CACTTTCTGAGAATTGTTAT+AGG 0.327100 3_2:+75461393 Msa0425130:five_prime_UTR
CATTGCATGTTGCTTCAATT+GGG 0.333919 3_2:-75460767 None:intergenic
TATGACACATATAACCAATA+AGG 0.334081 3_2:+75463828 Msa0425130:five_prime_UTR
GGAATTCGCTTCCGCCGTTC+CGG 0.357453 3_2:+75461217 Msa0425130:five_prime_UTR
CTCCGATCAGCCTTTACAAT+TGG 0.367849 3_2:-75461928 None:intergenic
TTACCTTCTGATTGTAAATC+CGG 0.385309 3_2:-75461236 None:intergenic
CGAAGTTGCTGCTGCTGATT+CGG 0.386996 3_2:+75465494 Msa0425130:CDS
TCAAATGATGGTTCAGGAAC+TGG 0.397688 3_2:+75464949 Msa0425130:CDS
AATTCCAAAACAATCATTAA+CGG 0.403566 3_2:-75465981 None:intergenic
GCCTAAGCTTGTGCGTGTTA+AGG 0.403824 3_2:+75465765 Msa0425130:exon
ATGTTCTCGCTATGAACCTT+GGG 0.409099 3_2:+75464833 Msa0425130:CDS
GACTCCAACTAGCAAACCTT+TGG 0.409498 3_2:+75465521 Msa0425130:CDS
GTTGTTTACATAGGTTGGTC+AGG 0.410633 3_2:+75464306 Msa0425130:intron
TGCGGCAACATCATCTTTGT+TGG 0.415154 3_2:-75465640 None:intergenic
TGGTACTTGCTATTTACATT+TGG 0.415447 3_2:+75464645 Msa0425130:five_prime_UTR
TGAGAGTGAGGGAGAGAAGT+AGG 0.416451 3_2:-75460699 None:intergenic
AACCTTGGGTTTGTCGTAGC+AGG 0.419383 3_2:+75464847 Msa0425130:CDS
AGAAGGGGAACGAGAGAAAC+GGG 0.425800 3_2:+75460508 Msa0425130:five_prime_UTR
GGTTGGGAGTTCAAGGATAT+AGG 0.428162 3_2:+75464541 Msa0425130:five_prime_UTR
AAGGTTTGTAGGAGCAGGTT+AGG 0.429841 3_2:+75464778 Msa0425130:five_prime_UTR
CGGGAACAGGAGAGGAAGAA+GGG 0.440770 3_2:+75460527 Msa0425130:five_prime_UTR
ATAAAACGGTTGGGAGTTCA+AGG 0.442311 3_2:+75464534 Msa0425130:five_prime_UTR
GAGCACTCAAATGATGGTTC+AGG 0.447112 3_2:+75464943 Msa0425130:CDS
ACGGGAACAGGAGAGGAAGA+AGG 0.451499 3_2:+75460526 Msa0425130:five_prime_UTR
TTAGAAAATTCCAATTGTAA+AGG 0.455191 3_2:+75461918 Msa0425130:intron
AGAAGGAAAGGCTGAGAGTG+AGG 0.457126 3_2:-75460711 None:intergenic
GATGTTCTCGCTATGAACCT+TGG 0.457258 3_2:+75464832 Msa0425130:CDS
CAGAAAGAACGGCAGAGGAG+AGG 0.458020 3_2:+75460556 Msa0425130:five_prime_UTR
TTTCCCAAAGATTTGCTAGT+TGG 0.458073 3_2:-75465681 None:intergenic
GAACCACACCAGCCTGGGGC+AGG 0.459540 3_2:+75463862 Msa0425130:five_prime_UTR
ATCGTTGAGCACTCAAATGA+TGG 0.463132 3_2:+75464937 Msa0425130:CDS
AATGCTGAACCACACCAGCC+TGG 0.466265 3_2:+75463856 Msa0425130:five_prime_UTR
AAGAAGGGGAACGAGAGAAA+CGG 0.467039 3_2:+75460507 Msa0425130:five_prime_UTR
ATGACACATATAACCAATAA+GGG 0.467574 3_2:+75463829 Msa0425130:five_prime_UTR
CAAATCTGCAGAATTGTAGA+TGG 0.467950 3_2:+75461180 Msa0425130:five_prime_UTR
TTTAGTCTAATTTATTAAAG+TGG 0.470300 3_2:+75464439 Msa0425130:five_prime_UTR
GGAACGAGAGAAACGGGAAC+AGG 0.471493 3_2:+75460514 Msa0425130:five_prime_UTR
GGGAACAGGAGAGGAAGAAG+GGG 0.472264 3_2:+75460528 Msa0425130:five_prime_UTR
AGTGATTAGAAGCATAATCA+AGG 0.477232 3_2:+75460809 Msa0425130:five_prime_UTR
AGAAAGAACGGCAGAGGAGA+GGG 0.477733 3_2:+75460557 Msa0425130:five_prime_UTR
TGCCCTGCCCCAGGCTGGTG+TGG 0.478385 3_2:-75463865 None:intergenic
AGACTTGTAACCTTATACAC+AGG 0.481376 3_2:-75462919 None:intergenic
ATGCTGAACCACACCAGCCT+GGG 0.484261 3_2:+75463857 Msa0425130:five_prime_UTR
GTAGATGGCCTTGCTGTTTG+AGG 0.485273 3_2:+75461195 Msa0425130:five_prime_UTR
ATCACATGTCTTATAGTAGT+TGG 0.491112 3_2:+75464625 Msa0425130:five_prime_UTR
ACTCCAACTAGCAAATCTTT+GGG 0.491743 3_2:+75465678 Msa0425130:CDS
GCTCAACTCATTAGTAGTAA+TGG 0.498019 3_2:+75463097 Msa0425130:five_prime_UTR
GTTGTTGTGCATAGTTCTGA+TGG 0.499773 3_2:+75465582 Msa0425130:CDS
TTTCCCAAAGGTTTGCTAGT+TGG 0.503027 3_2:-75465525 None:intergenic
TAGATGGCCTTGCTGTTTGA+GGG 0.504380 3_2:+75461196 Msa0425130:five_prime_UTR
CTAATTTATTAAAGTGGTGG+AGG 0.516213 3_2:+75464445 Msa0425130:five_prime_UTR
ATGATAATTGCTAACCATCA+AGG 0.517087 3_2:-75465013 None:intergenic
TCCAACACTCCGATCTGCAC+TGG 0.517110 3_2:+75460608 Msa0425130:five_prime_UTR
AAATGAAAGGACAACAGACT+TGG 0.519997 3_2:-75465848 None:intergenic
ACTCCAACTAGCAAACCTTT+GGG 0.520423 3_2:+75465522 Msa0425130:CDS
GGGGAGGTTGAAGAATTAAA+GGG 0.520644 3_2:-75460746 None:intergenic
TCGTAGCAGGCCTTCACAGA+TGG 0.525934 3_2:+75464860 Msa0425130:CDS
TGGATCTGGCAGCTAAGCCT+TGG 0.530154 3_2:+75464581 Msa0425130:five_prime_UTR
TGCTACAAAAGAGCTAAAGC+TGG 0.538283 3_2:+75465608 Msa0425130:CDS
GAAGGAAAGGCTGAGAGTGA+GGG 0.541277 3_2:-75460710 None:intergenic
ATTGCATGTTGCTTCAATTG+GGG 0.544114 3_2:-75460766 None:intergenic
ACCTTAACACGCACAAGCTT+AGG 0.546106 3_2:-75465766 None:intergenic
GTGTTGGACGGCGAGGTCGA+CGG 0.546335 3_2:-75460593 None:intergenic
AGTCTAATTTATTAAAGTGG+TGG 0.547227 3_2:+75464442 Msa0425130:five_prime_UTR
ACCAGTGCAGATCGGAGTGT+TGG 0.547707 3_2:-75460609 None:intergenic
TTGCATGTTGCTTCAATTGG+GGG 0.548668 3_2:-75460765 None:intergenic
TAAGATGCCCTGCCCCAGGC+TGG 0.554845 3_2:-75463870 None:intergenic
ATATTAAGATGCCCTGCCCC+AGG 0.556018 3_2:-75463874 None:intergenic
TTCCAATTGTAAAGGCTGAT+CGG 0.556362 3_2:+75461926 Msa0425130:five_prime_UTR
GACGACAGAAAGAACGGCAG+AGG 0.561400 3_2:+75460551 Msa0425130:five_prime_UTR
AATACCCTAAAAGAGTTGCT+TGG 0.561965 3_2:+75464892 Msa0425130:CDS
TAAACAACTTCAGCATCTCT+AGG 0.562490 3_2:-75461952 None:intergenic
AAGGGTCTGATGTAGAAAGA+AGG 0.565269 3_2:-75460728 None:intergenic
TTTCAAGAGACTTCACTCAT+CGG 0.565680 3_2:-75465794 None:intergenic
CTTTCTGAGAATTGTTATAG+GGG 0.565811 3_2:+75461395 Msa0425130:five_prime_UTR
ATAGGTTGGTCAGGATGTTG+TGG 0.569173 3_2:+75464315 Msa0425130:intron
TCTAATCACTTAAAGCATGT+AGG 0.575251 3_2:-75460796 None:intergenic
CTAGCAAACCTTTGGGAAAG+CGG 0.578566 3_2:+75465529 Msa0425130:CDS
TCAGTAGACCGCTTTCCCAA+AGG 0.587701 3_2:-75465537 None:intergenic
GAGTGAGGGAGAGAAGTAGG+AGG 0.589607 3_2:-75460696 None:intergenic
GAGAGAAACGGGAACAGGAG+AGG 0.594571 3_2:+75460519 Msa0425130:five_prime_UTR
AACCACACCAGCCTGGGGCA+GGG 0.599086 3_2:+75463863 Msa0425130:five_prime_UTR
AAATCAAAACCAGTGCAGAT+CGG 0.601823 3_2:-75460617 None:intergenic
GTTCCGGATTTACAATCAGA+AGG 0.606276 3_2:+75461233 Msa0425130:five_prime_UTR
AAGGTTACAAGTCTACAATA+CGG 0.613703 3_2:+75462928 Msa0425130:five_prime_UTR
TTAATATATTGATGAAGATG+AGG 0.613751 3_2:+75463890 Msa0425130:five_prime_UTR
GATCGGAGTGTTGGACGGCG+AGG 0.614383 3_2:-75460600 None:intergenic
TCTCTAAGCACCATCTGTGA+AGG 0.622635 3_2:-75464870 None:intergenic
AAAGCGGTCTACTGATAGTG+TGG 0.622760 3_2:+75465545 Msa0425130:CDS
GACTTGTAACCTTATACACA+GGG 0.625405 3_2:-75462918 None:intergenic
GGAACAGGAGAGGAAGAAGG+GGG 0.626538 3_2:+75460529 Msa0425130:five_prime_UTR
CATATGTTTCTGTAAGTGAG+AGG 0.636244 3_2:-75460670 None:intergenic
AGTGAGGGAGAGAAGTAGGA+GGG 0.638656 3_2:-75460695 None:intergenic
GTGCAGATCGGAGTGTTGGA+CGG 0.639439 3_2:-75460605 None:intergenic
TTCTGATTGTAAATCCGGAA+CGG 0.639789 3_2:-75461231 None:intergenic
GCGAATTCCCTCAAACAGCA+AGG 0.650955 3_2:-75461203 None:intergenic
TCTGATGTAGAAAGAAGGAA+AGG 0.652049 3_2:-75460723 None:intergenic
AGAAAAGCAATTGAGAAACA+AGG 0.655094 3_2:+75464346 Msa0425130:five_prime_UTR
CATGCAGGAAAATATTGAAG+TGG 0.661188 3_2:+75465452 Msa0425130:intron
TGGTTCAGGAACTGGTGCAG+TGG 0.662719 3_2:+75464957 Msa0425130:CDS
GGCCTGCTACGACAAACCCA+AGG 0.672057 3_2:-75464849 None:intergenic
TTGGACGGCGAGGTCGACGG+CGG 0.673722 3_2:-75460590 None:intergenic
TGCTGAACCACACCAGCCTG+GGG 0.676055 3_2:+75463858 Msa0425130:five_prime_UTR
GTTAGCTTATCAAAATCCTG+TGG 0.715142 3_2:+75465346 Msa0425130:CDS
TGATTGTAAATCCGGAACGG+CGG 0.718622 3_2:-75461228 None:intergenic
AGTCACAACTGAATCAACTG+CGG 0.772555 3_2:-75465658 None:intergenic
ACTTGTAACCTTATACACAG+GGG 0.808294 3_2:-75462917 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTAAAAAAAAAAAAA+GGG - chr3_2:75461686-75461705 None:intergenic 0.0%
!! ATAATATTAAAAAAAAAAAA+AGG - chr3_2:75461687-75461706 None:intergenic 0.0%
!!! TTTTTTTTTTTTTAATATTA+TGG + chr3_2:75461686-75461705 Msa0425130:intron 0.0%
!!! TTTTTTTTTTTTAATATTAT+GGG + chr3_2:75461687-75461706 Msa0425130:intron 0.0%
!!! AAATTTCTAATTTAAAACAA+TGG + chr3_2:75463326-75463345 Msa0425130:intron 10.0%
!!! ATTTAGTTTAGAAAAAATTA+AGG - chr3_2:75463394-75463413 None:intergenic 10.0%
!! CTAATAATCAAAAAAATAAC+TGG - chr3_2:75460916-75460935 None:intergenic 15.0%
!!! TTTTATGATTAAACTGATTT+AGG + chr3_2:75461109-75461128 Msa0425130:intron 15.0%
!! TATATAAAAATCTTTCACTT+TGG + chr3_2:75461455-75461474 Msa0425130:intron 15.0%
!! AAAAAAAATCATCTATCTTA+GGG - chr3_2:75461481-75461500 None:intergenic 15.0%
!! TAAAAAAAATCATCTATCTT+AGG - chr3_2:75461482-75461501 None:intergenic 15.0%
!!! TAAGATAGATGATTTTTTTT+AGG + chr3_2:75461481-75461500 Msa0425130:intron 15.0%
!!! AAGATAGATGATTTTTTTTA+GGG + chr3_2:75461482-75461501 Msa0425130:intron 15.0%
!! CATATAATATTTGCAAAATT+TGG - chr3_2:75462127-75462146 None:intergenic 15.0%
!!! TTTTATACTCAATAAGTTTT+TGG + chr3_2:75463283-75463302 Msa0425130:intron 15.0%
!!! ATTTATATTCTGATTTTTCA+AGG + chr3_2:75463746-75463765 Msa0425130:intron 15.0%
!!! TTTATATTCTGATTTTTCAA+GGG + chr3_2:75463747-75463766 Msa0425130:intron 15.0%
!!! TTTATAGCAAGAATTTTTTT+TGG + chr3_2:75464076-75464095 Msa0425130:intron 15.0%
!!! TTATAGCAAGAATTTTTTTT+GGG + chr3_2:75464077-75464096 Msa0425130:intron 15.0%
!! AAACTAAGTATAAAATGTAA+AGG - chr3_2:75464282-75464301 None:intergenic 15.0%
!! TTTAGTCTAATTTATTAAAG+TGG + chr3_2:75464439-75464458 Msa0425130:five_prime_UTR 15.0%
!!! AGATTAAAGCTTTTATAAAA+CGG + chr3_2:75464520-75464539 Msa0425130:five_prime_UTR 15.0%
!!! AAAACTTTAAAAACTATACT+TGG - chr3_2:75464736-75464755 None:intergenic 15.0%
!! AAAAAACAAAACAAAATGAA+AGG - chr3_2:75465864-75465883 None:intergenic 15.0%
!!! TGGTTTTGATTTTATTGAAT+TGG + chr3_2:75460628-75460647 Msa0425130:five_prime_UTR 20.0%
!!! TTGTTATTATCTGAAGTTTT+TGG + chr3_2:75461014-75461033 Msa0425130:intron 20.0%
!!! TTTTTGATTTTGTTTGTTGT+TGG + chr3_2:75461069-75461088 Msa0425130:intron 20.0%
!!! GTTTTTTGATTTTTGAAAAC+TGG + chr3_2:75461305-75461324 Msa0425130:intron 20.0%
!! TTAAAGTAGTAACTTTATCT+TGG + chr3_2:75461544-75461563 Msa0425130:intron 20.0%
!! TTAGAAAATTCCAATTGTAA+AGG + chr3_2:75461918-75461937 Msa0425130:intron 20.0%
!!! TGGTTATTCAATTCTTTTTA+CGG + chr3_2:75462079-75462098 Msa0425130:intron 20.0%
!!! ATTTTGAGTCATTTTTAGAA+AGG + chr3_2:75462310-75462329 Msa0425130:intron 20.0%
!! GTCAAATAGTGTAATTATTA+TGG + chr3_2:75462350-75462369 Msa0425130:intron 20.0%
!!! AAACTTCTATTGTTTTATGA+AGG + chr3_2:75462884-75462903 Msa0425130:intron 20.0%
!! AGAATTAGATATTTCACATT+TGG + chr3_2:75463517-75463536 Msa0425130:intron 20.0%
!! TCATAGCAATAAAAACAATT+CGG - chr3_2:75463721-75463740 None:intergenic 20.0%
!!! TGCTTATTTTCTTTCAATTT+TGG + chr3_2:75463796-75463815 Msa0425130:intron 20.0%
!! TTAATATATTGATGAAGATG+AGG + chr3_2:75463890-75463909 Msa0425130:five_prime_UTR 20.0%
!! ATGTTCTTATCACAATTAAT+TGG + chr3_2:75463962-75463981 Msa0425130:intron 20.0%
!!! TAAAAAATCGGTCAAATTTT+CGG - chr3_2:75464036-75464055 None:intergenic 20.0%
!! CAACCAAAATCATAAAAAAT+CGG - chr3_2:75464048-75464067 None:intergenic 20.0%
!!! TCAAATATTTTGATCTTTCA+TGG + chr3_2:75464167-75464186 Msa0425130:intron 20.0%
!!! AGTTTTATTGTTGTTTACAT+AGG + chr3_2:75464297-75464316 Msa0425130:intron 20.0%
!!! AGGTTAATTTTATCACTAAT+TGG + chr3_2:75464561-75464580 Msa0425130:five_prime_UTR 20.0%
!! TTTACCTTAAAAACTATACT+TGG - chr3_2:75464694-75464713 None:intergenic 20.0%
!!! TTTTAAAGTTTTGAAATACG+AGG + chr3_2:75464744-75464763 Msa0425130:five_prime_UTR 20.0%
!! AATTCCAAAACAATCATTAA+CGG - chr3_2:75465984-75466003 None:intergenic 20.0%
!! TTTCTCAATCAATTGAATTA+TGG + chr3_2:75466022-75466041 Msa0425130:three_prime_UTR 20.0%
!!! AGTTTTTGGTTGAGAAATTT+TGG + chr3_2:75461028-75461047 Msa0425130:intron 25.0%
!! AATTTTCATGCAGGAAAATT+GGG + chr3_2:75461156-75461175 Msa0425130:intron 25.0%
!! ACTTTCTGAGAATTGTTATA+GGG + chr3_2:75461394-75461413 Msa0425130:five_prime_UTR 25.0%
! AATGGTTAAGGAATCAAAAA+AGG - chr3_2:75461638-75461657 None:intergenic 25.0%
!! TTACGGAAATTCAATGTTTT+TGG + chr3_2:75462096-75462115 Msa0425130:intron 25.0%
!! TGTTATATACATTTTGAGCA+TGG + chr3_2:75462247-75462266 Msa0425130:intron 25.0%
!! CTGTCTTTGAACAAAATTTT+TGG + chr3_2:75462274-75462293 Msa0425130:intron 25.0%
!!! TCAATTATTTTCAAGTAGTG+AGG + chr3_2:75462385-75462404 Msa0425130:intron 25.0%
!!! GTATATGTAAGTTTTAGCAA+TGG - chr3_2:75462620-75462639 None:intergenic 25.0%
! TATAAGAAGATAACTGTTTG+AGG - chr3_2:75462749-75462768 None:intergenic 25.0%
!!! CAATCATTTTTGGAAAGAAT+TGG - chr3_2:75462789-75462808 None:intergenic 25.0%
! TCTTTCCAAAAATGATTGAT+TGG + chr3_2:75462791-75462810 Msa0425130:intron 25.0%
! CTTTCCAAAAATGATTGATT+GGG + chr3_2:75462792-75462811 Msa0425130:intron 25.0%
!! AATTCCCAATCAATCATTTT+TGG - chr3_2:75462799-75462818 None:intergenic 25.0%
!!! ATTGTTTTATGAAGGTAACT+TGG + chr3_2:75462892-75462911 Msa0425130:intron 25.0%
!!! TAGGTTTGTTGAGTTAATTA+AGG + chr3_2:75463120-75463139 Msa0425130:intron 25.0%
! TAACAACAGGAAAAGAAAAA+GGG - chr3_2:75463242-75463261 None:intergenic 25.0%
! ATAACAACAGGAAAAGAAAA+AGG - chr3_2:75463243-75463262 None:intergenic 25.0%
! AGTTACACAATAATAACAAC+AGG - chr3_2:75463255-75463274 None:intergenic 25.0%
!!! TTTTTGGTTTAGCAATTTCT+TGG + chr3_2:75463299-75463318 Msa0425130:intron 25.0%
!!! AAAGTCTTATTGGATTACTT+TGG + chr3_2:75463443-75463462 Msa0425130:intron 25.0%
! ATATCTAATTCTATGCATGA+GGG - chr3_2:75463509-75463528 None:intergenic 25.0%
! AATATCTAATTCTATGCATG+AGG - chr3_2:75463510-75463529 None:intergenic 25.0%
! TCTTATACTATCTCAAAGTT+TGG + chr3_2:75463583-75463602 Msa0425130:intron 25.0%
! TACTTCATTACGAATAACTT+TGG + chr3_2:75463628-75463647 Msa0425130:intron 25.0%
! CATAGCAATAAAAACAATTC+GGG - chr3_2:75463720-75463739 None:intergenic 25.0%
! TATGACACATATAACCAATA+AGG + chr3_2:75463828-75463847 Msa0425130:five_prime_UTR 25.0%
! ATGACACATATAACCAATAA+GGG + chr3_2:75463829-75463848 Msa0425130:five_prime_UTR 25.0%
! GTATAGAAATCTCCTAAAAT+TGG + chr3_2:75463917-75463936 Msa0425130:intron 25.0%
!!! AAATGAGTTTTTTAGTCTAC+AGG + chr3_2:75463994-75464013 Msa0425130:intron 25.0%
!!! AATGAGTTTTTTAGTCTACA+GGG + chr3_2:75463995-75464014 Msa0425130:intron 25.0%
!!! TGACCGATTTTTTATGATTT+TGG + chr3_2:75464042-75464061 Msa0425130:intron 25.0%
!!! TTATTGTTGTTTACATAGGT+TGG + chr3_2:75464301-75464320 Msa0425130:intron 25.0%
! AGTCTAATTTATTAAAGTGG+TGG + chr3_2:75464442-75464461 Msa0425130:five_prime_UTR 25.0%
!! TAAAGCTTTTATAAAACGGT+TGG + chr3_2:75464524-75464543 Msa0425130:five_prime_UTR 25.0%
!! AAAGCTTTTATAAAACGGTT+GGG + chr3_2:75464525-75464544 Msa0425130:five_prime_UTR 25.0%
!! ATTTTATCACTAATTGGATC+TGG + chr3_2:75464567-75464586 Msa0425130:five_prime_UTR 25.0%
!! TAAAAAAAGATTTTGTGCCA+AGG - chr3_2:75464601-75464620 None:intergenic 25.0%
! ATTAATTATTTCCTCAGTCA+TGG - chr3_2:75465136-75465155 None:intergenic 25.0%
! TGACTGAGGAAATAATTAAT+CGG + chr3_2:75465136-75465155 Msa0425130:intron 25.0%
!!! GGAAATAATTAATCGGTTTT+TGG + chr3_2:75465143-75465162 Msa0425130:intron 25.0%
! GCTCAAAAAAAGAAATCAAA+AGG - chr3_2:75465280-75465299 None:intergenic 25.0%
!!! TTGATTTCTTTTTTTGAGCT+TGG + chr3_2:75465281-75465300 Msa0425130:intron 25.0%
! TGATCAAAAAAATATACCAC+AGG - chr3_2:75465365-75465384 None:intergenic 25.0%
! ATCATTTCTGCAGTTTATAA+AGG + chr3_2:75465381-75465400 Msa0425130:intron 25.0%
TCTAATCACTTAAAGCATGT+AGG - chr3_2:75460799-75460818 None:intergenic 30.0%
! AGTGATTAGAAGCATAATCA+AGG + chr3_2:75460809-75460828 Msa0425130:five_prime_UTR 30.0%
! TTAGAAGCATAATCAAGGTT+TGG + chr3_2:75460814-75460833 Msa0425130:intron 30.0%
!! TTTCCCCTTTTAATCGATTT+AGG + chr3_2:75460970-75460989 Msa0425130:intron 30.0%
!! TTCCCCTTTTAATCGATTTA+GGG + chr3_2:75460971-75460990 Msa0425130:intron 30.0%
AACCCTAAATCGATTAAAAG+GGG - chr3_2:75460976-75460995 None:intergenic 30.0%
GAACCCTAAATCGATTAAAA+GGG - chr3_2:75460977-75460996 None:intergenic 30.0%
!!! TGAGAAATTTTGGTTGATTC+TGG + chr3_2:75461038-75461057 Msa0425130:intron 30.0%
! TTAAACTGATTTAGGCTGAT+TGG + chr3_2:75461117-75461136 Msa0425130:intron 30.0%
! TAAACTGATTTAGGCTGATT+GGG + chr3_2:75461118-75461137 Msa0425130:intron 30.0%
! TTTTGGATGAATTTTCATGC+AGG + chr3_2:75461147-75461166 Msa0425130:intron 30.0%
! GAATTTTCATGCAGGAAAAT+TGG + chr3_2:75461155-75461174 Msa0425130:intron 30.0%
TTACCTTCTGATTGTAAATC+CGG - chr3_2:75461239-75461258 None:intergenic 30.0%
! CACTTTCTGAGAATTGTTAT+AGG + chr3_2:75461393-75461412 Msa0425130:five_prime_UTR 30.0%
! CTTTCTGAGAATTGTTATAG+GGG + chr3_2:75461395-75461414 Msa0425130:five_prime_UTR 30.0%
ATCAAGCTATTGTTTAGTAC+AGG + chr3_2:75461864-75461883 Msa0425130:intron 30.0%
AAAGAATTGAATAACCAGAG+AGG - chr3_2:75462076-75462095 None:intergenic 30.0%
TCTTCATCTAATCAGAAATG+TGG + chr3_2:75462157-75462176 Msa0425130:intron 30.0%
CTTCATCTAATCAGAAATGT+GGG + chr3_2:75462158-75462177 Msa0425130:intron 30.0%
CTAACTTCAATTCTCATCAT+TGG - chr3_2:75462209-75462228 None:intergenic 30.0%
TGAGAATTGAAGTTAGTTAG+CGG + chr3_2:75462213-75462232 Msa0425130:intron 30.0%
GAACAATGTGTATTCTCAAT+AGG + chr3_2:75462443-75462462 Msa0425130:intron 30.0%
! ATAGTTGCTTTCATCTATAC+AGG + chr3_2:75462471-75462490 Msa0425130:intron 30.0%
! TAGTTGCTTTCATCTATACA+GGG + chr3_2:75462472-75462491 Msa0425130:intron 30.0%
!! TATGTAAGTTTTAGCAATGG+TGG - chr3_2:75462617-75462636 None:intergenic 30.0%
! ATGTAAATTTTGTGTCTCCA+GGG - chr3_2:75462696-75462715 None:intergenic 30.0%
! TATGTAAATTTTGTGTCTCC+AGG - chr3_2:75462697-75462716 None:intergenic 30.0%
AAGGTTACAAGTCTACAATA+CGG + chr3_2:75462928-75462947 Msa0425130:five_prime_UTR 30.0%
! GCAAATTTTCTCTCATTTCT+CGG + chr3_2:75463069-75463088 Msa0425130:five_prime_UTR 30.0%
! CAAATTTTCTCTCATTTCTC+GGG + chr3_2:75463070-75463089 Msa0425130:five_prime_UTR 30.0%
AACTCATTAGTAGTAATGGT+AGG + chr3_2:75463101-75463120 Msa0425130:intron 30.0%
! TTAAATTCATTGACTGTGCA+TGG + chr3_2:75463183-75463202 Msa0425130:intron 30.0%
GTTACTCATCAATAACTCTT+TGG - chr3_2:75463362-75463381 None:intergenic 30.0%
!! TTTTCCACTAATTTTGAGTG+AGG + chr3_2:75463414-75463433 Msa0425130:intron 30.0%
TATCTAATTCTATGCATGAG+GGG - chr3_2:75463508-75463527 None:intergenic 30.0%
!!! TCTGATTTTTCAAGGGAATA+AGG + chr3_2:75463754-75463773 Msa0425130:intron 30.0%
!!! CTGATTTTTCAAGGGAATAA+GGG + chr3_2:75463755-75463774 Msa0425130:intron 30.0%
!! TTCTTTCAATTTTGGTGAAC+AGG + chr3_2:75463804-75463823 Msa0425130:intron 30.0%
ATATTGATGAAGATGAGGTA+TGG + chr3_2:75463895-75463914 Msa0425130:intron 30.0%
!!! TGATCTTTCATGGTGTTTTT+TGG + chr3_2:75464177-75464196 Msa0425130:intron 30.0%
CATCAAAGCAATTAGTATTC+AGG - chr3_2:75464234-75464253 None:intergenic 30.0%
TGTAAAGGTGAAAGAATAAC+AGG - chr3_2:75464267-75464286 None:intergenic 30.0%
AGAAAAGCAATTGAGAAACA+AGG + chr3_2:75464346-75464365 Msa0425130:five_prime_UTR 30.0%
CTAATTTATTAAAGTGGTGG+AGG + chr3_2:75464445-75464464 Msa0425130:five_prime_UTR 30.0%
!!! ATGCTATTTTCCTCCATTTT+TGG + chr3_2:75464468-75464487 Msa0425130:five_prime_UTR 30.0%
ATCACATGTCTTATAGTAGT+TGG + chr3_2:75464625-75464644 Msa0425130:five_prime_UTR 30.0%
!! TGGTACTTGCTATTTACATT+TGG + chr3_2:75464645-75464664 Msa0425130:five_prime_UTR 30.0%
! TCGACCAAGTATAGTTTTTA+AGG + chr3_2:75464687-75464706 Msa0425130:intron 30.0%
TCTCATTCTTATTACCTTGA+TGG + chr3_2:75464999-75465018 Msa0425130:CDS 30.0%
ATGATAATTGCTAACCATCA+AGG - chr3_2:75465016-75465035 None:intergenic 30.0%
TAGACTTTACATTTATCCCA+TGG - chr3_2:75465198-75465217 None:intergenic 30.0%
! CTTGAAAGATTATCGAGTTT+TGG + chr3_2:75465810-75465829 Msa0425130:three_prime_UTR 30.0%
! GTTTCCGTTAATGATTGTTT+TGG + chr3_2:75465977-75465996 Msa0425130:three_prime_UTR 30.0%
AAATCAAAACCAGTGCAGAT+CGG - chr3_2:75460620-75460639 None:intergenic 35.0%
! CATATGTTTCTGTAAGTGAG+AGG - chr3_2:75460673-75460692 None:intergenic 35.0%
TCTGATGTAGAAAGAAGGAA+AGG - chr3_2:75460726-75460745 None:intergenic 35.0%
! ATTGCATGTTGCTTCAATTG+GGG - chr3_2:75460769-75460788 None:intergenic 35.0%
! CATTGCATGTTGCTTCAATT+GGG - chr3_2:75460770-75460789 None:intergenic 35.0%
! TCATTGCATGTTGCTTCAAT+TGG - chr3_2:75460771-75460790 None:intergenic 35.0%
! AAGACTGATTCAGCCAATAA+GGG - chr3_2:75460855-75460874 None:intergenic 35.0%
! AGTCTTCTCTTTTCATGTTC+TGG + chr3_2:75460869-75460888 Msa0425130:intron 35.0%
! GTCTTCTCTTTTCATGTTCT+GGG + chr3_2:75460870-75460889 Msa0425130:intron 35.0%
GGAACCCTAAATCGATTAAA+AGG - chr3_2:75460978-75460997 None:intergenic 35.0%
!!! GATTTAGGGTTCCTCTTTTT+TGG + chr3_2:75460985-75461004 Msa0425130:intron 35.0%
AACAACAACCTCCAAAAAAG+AGG - chr3_2:75460999-75461018 None:intergenic 35.0%
!! GTTGTTGGATGTTTCTGTTT+TGG + chr3_2:75461084-75461103 Msa0425130:intron 35.0%
! AAACTGATTTAGGCTGATTG+GGG + chr3_2:75461119-75461138 Msa0425130:intron 35.0%
CAAATCTGCAGAATTGTAGA+TGG + chr3_2:75461180-75461199 Msa0425130:five_prime_UTR 35.0%
TTCTGATTGTAAATCCGGAA+CGG - chr3_2:75461234-75461253 None:intergenic 35.0%
ATTGCGATGACAGAAATTTG+GGG - chr3_2:75461274-75461293 None:intergenic 35.0%
GATTGCGATGACAGAAATTT+GGG - chr3_2:75461275-75461294 None:intergenic 35.0%
TTTCTTATCAAGTGCCTTGA+GGG - chr3_2:75461523-75461542 None:intergenic 35.0%
ATTCCTTAACCATTGTCCTA+AGG + chr3_2:75461644-75461663 Msa0425130:intron 35.0%
TTCCTTAACCATTGTCCTAA+GGG + chr3_2:75461645-75461664 Msa0425130:intron 35.0%
AAGTTCATTGACACAACATG+TGG + chr3_2:75461745-75461764 Msa0425130:intron 35.0%
ACAACATGTGGAAAATGTGT+CGG + chr3_2:75461757-75461776 Msa0425130:intron 35.0%
TTCCAATTGTAAAGGCTGAT+CGG + chr3_2:75461926-75461945 Msa0425130:five_prime_UTR 35.0%
TAAACAACTTCAGCATCTCT+AGG - chr3_2:75461955-75461974 None:intergenic 35.0%
TTCAAGTAGTGAGGAATAGA+TGG + chr3_2:75462394-75462413 Msa0425130:intron 35.0%
TCAAGTAGTGAGGAATAGAT+GGG + chr3_2:75462395-75462414 Msa0425130:intron 35.0%
CATTTAGAAGCTTAGAGTCA+CGG + chr3_2:75462548-75462567 Msa0425130:intron 35.0%
ATTTAGAAGCTTAGAGTCAC+GGG + chr3_2:75462549-75462568 Msa0425130:intron 35.0%
! GCTCATTGCCAAAAGTTTTA+TGG + chr3_2:75462720-75462739 Msa0425130:intron 35.0%
! TGAGGCAACCATAAAACTTT+TGG - chr3_2:75462731-75462750 None:intergenic 35.0%
TGCTAATCGCTGTCATAATT+AGG - chr3_2:75462845-75462864 None:intergenic 35.0%
ACTTGTAACCTTATACACAG+GGG - chr3_2:75462920-75462939 None:intergenic 35.0%
GACTTGTAACCTTATACACA+GGG - chr3_2:75462921-75462940 None:intergenic 35.0%
AGACTTGTAACCTTATACAC+AGG - chr3_2:75462922-75462941 None:intergenic 35.0%
AACTATCGATAATGCAGTGT+TGG - chr3_2:75462985-75463004 None:intergenic 35.0%
GCTCAACTCATTAGTAGTAA+TGG + chr3_2:75463097-75463116 Msa0425130:five_prime_UTR 35.0%
ACAGGAAAAGAAAAAGGGAA+CGG - chr3_2:75463237-75463256 None:intergenic 35.0%
! TGGTCTATCATTAGTTGATG+TGG + chr3_2:75463463-75463482 Msa0425130:intron 35.0%
ATCTAATTCTATGCATGAGG+GGG - chr3_2:75463507-75463526 None:intergenic 35.0%
! GGAGTGAAGTTTTGCAATTT+TGG + chr3_2:75463538-75463557 Msa0425130:intron 35.0%
GAAGTATAGAGAAACATGCA+AGG - chr3_2:75463614-75463633 None:intergenic 35.0%
TTCAGCATTTAGACCCTTAT+TGG - chr3_2:75463845-75463864 None:intergenic 35.0%
GAAATCTCCTAAAATTGGTG+TGG + chr3_2:75463922-75463941 Msa0425130:intron 35.0%
AGGTGAAAGAATAACAGGAA+AGG - chr3_2:75464262-75464281 None:intergenic 35.0%
!!! TCCTCCATTTTTGGTTGTTA+TGG + chr3_2:75464477-75464496 Msa0425130:five_prime_UTR 35.0%
!!! ATTTTTGGTTGTTATGGCAG+CGG + chr3_2:75464483-75464502 Msa0425130:five_prime_UTR 35.0%
TGCACACAAAAAAGGTTTGT+AGG + chr3_2:75464767-75464786 Msa0425130:five_prime_UTR 35.0%
AATACCCTAAAAGAGTTGCT+TGG + chr3_2:75464892-75464911 Msa0425130:CDS 35.0%
! TTCACCAAGCAACTCTTTTA+GGG - chr3_2:75464899-75464918 None:intergenic 35.0%
! ATTCACCAAGCAACTCTTTT+AGG - chr3_2:75464900-75464919 None:intergenic 35.0%
ATGCCAACCTTTATCGTAAT+TGG + chr3_2:75465085-75465104 Msa0425130:intron 35.0%
!!! ATCAGTTTTTTGACCTCCAT+GGG + chr3_2:75465179-75465198 Msa0425130:intron 35.0%
ACTTTACATTTATCCCATGG+AGG - chr3_2:75465195-75465214 None:intergenic 35.0%
TGTCTCACTCTGCATATAAT+TGG - chr3_2:75465253-75465272 None:intergenic 35.0%
! GTTAGCTTATCAAAATCCTG+TGG + chr3_2:75465346-75465365 Msa0425130:CDS 35.0%
CATGCAGGAAAATATTGAAG+TGG + chr3_2:75465452-75465471 Msa0425130:intron 35.0%
ACTCCAACTAGCAAATCTTT+GGG + chr3_2:75465678-75465697 Msa0425130:CDS 35.0%
!! TTTCCCAAAGATTTGCTAGT+TGG - chr3_2:75465684-75465703 None:intergenic 35.0%
TTTCAAGAGACTTCACTCAT+CGG - chr3_2:75465797-75465816 None:intergenic 35.0%
AAATGAAAGGACAACAGACT+TGG - chr3_2:75465851-75465870 None:intergenic 35.0%
GCATAAAAACACCATAAGTC+TGG - chr3_2:75465931-75465950 None:intergenic 35.0%
AAGGGTCTGATGTAGAAAGA+AGG - chr3_2:75460731-75460750 None:intergenic 40.0%
GGGGAGGTTGAAGAATTAAA+GGG - chr3_2:75460749-75460768 None:intergenic 40.0%
! TTGCATGTTGCTTCAATTGG+GGG - chr3_2:75460768-75460787 None:intergenic 40.0%
CCAATAAGGGAAGGAGAATA+AGG - chr3_2:75460842-75460861 None:intergenic 40.0%
CCTTATTCTCCTTCCCTTAT+TGG + chr3_2:75460839-75460858 Msa0425130:intron 40.0%
! GAAGACTGATTCAGCCAATA+AGG - chr3_2:75460856-75460875 None:intergenic 40.0%
! TCTGGGTTTGCTTGTGAAAT+TGG + chr3_2:75460887-75460906 Msa0425130:intron 40.0%
!!! TTAGGGTTCCTCTTTTTTGG+AGG + chr3_2:75460988-75461007 Msa0425130:intron 40.0%
GTTCCGGATTTACAATCAGA+AGG + chr3_2:75461233-75461252 Msa0425130:five_prime_UTR 40.0%
CGATTGCGATGACAGAAATT+TGG - chr3_2:75461276-75461295 None:intergenic 40.0%
GTTTCTTATCAAGTGCCTTG+AGG - chr3_2:75461524-75461543 None:intergenic 40.0%
! TTTTGCTAACCAATGCCCTT+AGG - chr3_2:75461663-75461682 None:intergenic 40.0%
AAGCAGCAAAAGAGCTTAAC+TGG + chr3_2:75461989-75462008 Msa0425130:five_prime_UTR 40.0%
AGCTTAACTGGAAGTAAGTG+TGG + chr3_2:75462001-75462020 Msa0425130:intron 40.0%
GAGGAATAGATGGGAGTTAT+AGG + chr3_2:75462404-75462423 Msa0425130:intron 40.0%
!! AAGTTCATTGCTTTTGACGC+TGG - chr3_2:75463046-75463065 None:intergenic 40.0%
CATGGTGCTCATTAAAGGTT+CGG + chr3_2:75463201-75463220 Msa0425130:intron 40.0%
CAGTCCTCACTCAAAATTAG+TGG - chr3_2:75463421-75463440 None:intergenic 40.0%
! GAGGACTGTCAAAGTCTTAT+TGG + chr3_2:75463433-75463452 Msa0425130:intron 40.0%
! ATTTTGGACATGCCACAAGT+TGG + chr3_2:75463554-75463573 Msa0425130:intron 40.0%
ATAAGAGTCGATCCAACTTG+TGG - chr3_2:75463569-75463588 None:intergenic 40.0%
! AACACAGCCACACCAATTTT+AGG - chr3_2:75463932-75463951 None:intergenic 40.0%
!!! AGTTTTTTAGTCTACAGGGC+TGG + chr3_2:75463999-75464018 Msa0425130:intron 40.0%
!! GTTGTTTACATAGGTTGGTC+AGG + chr3_2:75464306-75464325 Msa0425130:intron 40.0%
GCCATAACAACCAAAAATGG+AGG - chr3_2:75464481-75464500 None:intergenic 40.0%
GCTGCCATAACAACCAAAAA+TGG - chr3_2:75464484-75464503 None:intergenic 40.0%
ATAAAACGGTTGGGAGTTCA+AGG + chr3_2:75464534-75464553 Msa0425130:five_prime_UTR 40.0%
ATACGAGGTGCACACAAAAA+AGG + chr3_2:75464759-75464778 Msa0425130:five_prime_UTR 40.0%
CAAAAAAGGTTTGTAGGAGC+AGG + chr3_2:75464773-75464792 Msa0425130:five_prime_UTR 40.0%
ATGTTCTCGCTATGAACCTT+GGG + chr3_2:75464833-75464852 Msa0425130:CDS 40.0%
ATCGTTGAGCACTCAAATGA+TGG + chr3_2:75464937-75464956 Msa0425130:CDS 40.0%
TCAAATGATGGTTCAGGAAC+TGG + chr3_2:75464949-75464968 Msa0425130:CDS 40.0%
CAAAAGAATGACCATGACTG+AGG + chr3_2:75465122-75465141 Msa0425130:intron 40.0%
AAAAAACTGATGTCCCATGG+AGG - chr3_2:75465170-75465189 None:intergenic 40.0%
GTCAAAAAACTGATGTCCCA+TGG - chr3_2:75465173-75465192 None:intergenic 40.0%
!!! CATCAGTTTTTTGACCTCCA+TGG + chr3_2:75465178-75465197 Msa0425130:intron 40.0%
!! ATCACTTTTCTCATGCATGC+AGG + chr3_2:75465437-75465456 Msa0425130:intron 40.0%
ACTCCAACTAGCAAACCTTT+GGG + chr3_2:75465522-75465541 Msa0425130:CDS 40.0%
!! TTTCCCAAAGGTTTGCTAGT+TGG - chr3_2:75465528-75465547 None:intergenic 40.0%
!! GTTGTTGTGCATAGTTCTGA+TGG + chr3_2:75465582-75465601 Msa0425130:CDS 40.0%
TGCTACAAAAGAGCTAAAGC+TGG + chr3_2:75465608-75465627 Msa0425130:CDS 40.0%
AGTCACAACTGAATCAACTG+CGG - chr3_2:75465661-75465680 None:intergenic 40.0%
GACTCCAACTAGCAAATCTT+TGG + chr3_2:75465677-75465696 Msa0425130:CDS 40.0%
AAGAAGGGGAACGAGAGAAA+CGG + chr3_2:75460507-75460526 Msa0425130:five_prime_UTR 45.0%
GGGGGAGGTTGAAGAATTAA+AGG - chr3_2:75460750-75460769 None:intergenic 45.0%
CTGATTCAGCCAATAAGGGA+AGG - chr3_2:75460851-75460870 None:intergenic 45.0%
!! TAGATGGCCTTGCTGTTTGA+GGG + chr3_2:75461196-75461215 Msa0425130:five_prime_UTR 45.0%
TGATTGTAAATCCGGAACGG+CGG - chr3_2:75461231-75461250 None:intergenic 45.0%
AATGCTAACAAGTGCCCTCA+AGG + chr3_2:75461506-75461525 Msa0425130:intron 45.0%
TGCCCTTAGGACAATGGTTA+AGG - chr3_2:75461650-75461669 None:intergenic 45.0%
! AACCATTGTCCTAAGGGCAT+TGG + chr3_2:75461651-75461670 Msa0425130:intron 45.0%
AACCAATGCCCTTAGGACAA+TGG - chr3_2:75461656-75461675 None:intergenic 45.0%
CTCCGATCAGCCTTTACAAT+TGG - chr3_2:75461931-75461950 None:intergenic 45.0%
GTTGTTAAAGCTCTCCTCTC+TGG + chr3_2:75462059-75462078 Msa0425130:intron 45.0%
CTATAGATCTTTCGTTGCCC+TGG + chr3_2:75462676-75462695 Msa0425130:intron 45.0%
CTGTGCATGGTGCTCATTAA+AGG + chr3_2:75463196-75463215 Msa0425130:intron 45.0%
!! CTGCAGACTTCTGAAATTGC+AGG - chr3_2:75463669-75463688 None:intergenic 45.0%
!! ATAGGTTGGTCAGGATGTTG+TGG + chr3_2:75464315-75464334 Msa0425130:intron 45.0%
GGTTGGGAGTTCAAGGATAT+AGG + chr3_2:75464541-75464560 Msa0425130:five_prime_UTR 45.0%
AAGGTTTGTAGGAGCAGGTT+AGG + chr3_2:75464778-75464797 Msa0425130:five_prime_UTR 45.0%
GATGTTCTCGCTATGAACCT+TGG + chr3_2:75464832-75464851 Msa0425130:CDS 45.0%
TCTCTAAGCACCATCTGTGA+AGG - chr3_2:75464873-75464892 None:intergenic 45.0%
GAGCACTCAAATGATGGTTC+AGG + chr3_2:75464943-75464962 Msa0425130:CDS 45.0%
GCGCCAATTACGATAAAGGT+TGG - chr3_2:75465091-75465110 None:intergenic 45.0%
AGCTGCGCCAATTACGATAA+AGG - chr3_2:75465095-75465114 None:intergenic 45.0%
!! AATCGGTTTTTGGACCTCCA+TGG + chr3_2:75465153-75465172 Msa0425130:intron 45.0%
!! ATCGGTTTTTGGACCTCCAT+GGG + chr3_2:75465154-75465173 Msa0425130:intron 45.0%
!!! TTTTGAGCTTGGTAACGACG+AGG + chr3_2:75465292-75465311 Msa0425130:intron 45.0%
GACTCCAACTAGCAAACCTT+TGG + chr3_2:75465521-75465540 Msa0425130:CDS 45.0%
! CTAGCAAACCTTTGGGAAAG+CGG + chr3_2:75465529-75465548 Msa0425130:CDS 45.0%
! AAAGCGGTCTACTGATAGTG+TGG + chr3_2:75465545-75465564 Msa0425130:CDS 45.0%
TGCGGCAACATCATCTTTGT+TGG - chr3_2:75465643-75465662 None:intergenic 45.0%
ACCTTAACACGCACAAGCTT+AGG - chr3_2:75465769-75465788 None:intergenic 45.0%
! TTTTGCTGCTGCCAGACTTA+TGG + chr3_2:75465917-75465936 Msa0425130:three_prime_UTR 45.0%
!!! TTTTTTTTTTTAATATTATG+GGG + chr3_2:75461688-75461707 Msa0425130:intron 5.0%
AGAAGGGGAACGAGAGAAAC+GGG + chr3_2:75460508-75460527 Msa0425130:five_prime_UTR 50.0%
AAGGGGGACGACAGAAAGAA+CGG + chr3_2:75460545-75460564 Msa0425130:five_prime_UTR 50.0%
AGAAAGAACGGCAGAGGAGA+GGG + chr3_2:75460557-75460576 Msa0425130:five_prime_UTR 50.0%
AGTGAGGGAGAGAAGTAGGA+GGG - chr3_2:75460698-75460717 None:intergenic 50.0%
TGAGAGTGAGGGAGAGAAGT+AGG - chr3_2:75460702-75460721 None:intergenic 50.0%
GAAGGAAAGGCTGAGAGTGA+GGG - chr3_2:75460713-75460732 None:intergenic 50.0%
AGAAGGAAAGGCTGAGAGTG+AGG - chr3_2:75460714-75460733 None:intergenic 50.0%
! CATGTTGCTTCAATTGGGGG+AGG - chr3_2:75460765-75460784 None:intergenic 50.0%
! GGCTGATTGGGGACTGTTTT+TGG + chr3_2:75461130-75461149 Msa0425130:intron 50.0%
!! GTAGATGGCCTTGCTGTTTG+AGG + chr3_2:75461195-75461214 Msa0425130:five_prime_UTR 50.0%
GCGAATTCCCTCAAACAGCA+AGG - chr3_2:75461206-75461225 None:intergenic 50.0%
!! ACTTGGTGCCCCTGTGTATA+AGG + chr3_2:75462909-75462928 Msa0425130:five_prime_UTR 50.0%
ATATTAAGATGCCCTGCCCC+AGG - chr3_2:75463877-75463896 None:intergenic 50.0%
AACCTTGGGTTTGTCGTAGC+AGG + chr3_2:75464847-75464866 Msa0425130:CDS 50.0%
TCAGTAGACCGCTTTCCCAA+AGG - chr3_2:75465540-75465559 None:intergenic 50.0%
GCCTAAGCTTGTGCGTGTTA+AGG + chr3_2:75465765-75465784 Msa0425130:exon 50.0%
GGAACGAGAGAAACGGGAAC+AGG + chr3_2:75460514-75460533 Msa0425130:five_prime_UTR 55.0%
GAGAGAAACGGGAACAGGAG+AGG + chr3_2:75460519-75460538 Msa0425130:five_prime_UTR 55.0%
ACGGGAACAGGAGAGGAAGA+AGG + chr3_2:75460526-75460545 Msa0425130:five_prime_UTR 55.0%
CGGGAACAGGAGAGGAAGAA+GGG + chr3_2:75460527-75460546 Msa0425130:five_prime_UTR 55.0%
GGGAACAGGAGAGGAAGAAG+GGG + chr3_2:75460528-75460547 Msa0425130:five_prime_UTR 55.0%
GGAACAGGAGAGGAAGAAGG+GGG + chr3_2:75460529-75460548 Msa0425130:five_prime_UTR 55.0%
GACGACAGAAAGAACGGCAG+AGG + chr3_2:75460551-75460570 Msa0425130:five_prime_UTR 55.0%
CAGAAAGAACGGCAGAGGAG+AGG + chr3_2:75460556-75460575 Msa0425130:five_prime_UTR 55.0%
!! GTGCAGATCGGAGTGTTGGA+CGG - chr3_2:75460608-75460627 None:intergenic 55.0%
TCCAACACTCCGATCTGCAC+TGG + chr3_2:75460608-75460627 Msa0425130:five_prime_UTR 55.0%
ACCAGTGCAGATCGGAGTGT+TGG - chr3_2:75460612-75460631 None:intergenic 55.0%
GAGTGAGGGAGAGAAGTAGG+AGG - chr3_2:75460699-75460718 None:intergenic 55.0%
AATGCTGAACCACACCAGCC+TGG + chr3_2:75463856-75463875 Msa0425130:five_prime_UTR 55.0%
ATGCTGAACCACACCAGCCT+GGG + chr3_2:75463857-75463876 Msa0425130:five_prime_UTR 55.0%
TGGATCTGGCAGCTAAGCCT+TGG + chr3_2:75464581-75464600 Msa0425130:five_prime_UTR 55.0%
TCGTAGCAGGCCTTCACAGA+TGG + chr3_2:75464860-75464879 Msa0425130:CDS 55.0%
TGGTTCAGGAACTGGTGCAG+TGG + chr3_2:75464957-75464976 Msa0425130:CDS 55.0%
GGAATTCGCTTCCGCCGTTC+CGG + chr3_2:75461217-75461236 Msa0425130:five_prime_UTR 60.0%
TGCTGAACCACACCAGCCTG+GGG + chr3_2:75463858-75463877 Msa0425130:five_prime_UTR 60.0%
GGCCTGCTACGACAAACCCA+AGG - chr3_2:75464852-75464871 None:intergenic 60.0%
GTGTTGGACGGCGAGGTCGA+CGG - chr3_2:75460596-75460615 None:intergenic 65.0%
!! GATCGGAGTGTTGGACGGCG+AGG - chr3_2:75460603-75460622 None:intergenic 65.0%
AACCACACCAGCCTGGGGCA+GGG + chr3_2:75463863-75463882 Msa0425130:five_prime_UTR 65.0%
TAAGATGCCCTGCCCCAGGC+TGG - chr3_2:75463873-75463892 None:intergenic 65.0%
TTGGACGGCGAGGTCGACGG+CGG - chr3_2:75460593-75460612 None:intergenic 70.0%
GAACCACACCAGCCTGGGGC+AGG + chr3_2:75463862-75463881 Msa0425130:five_prime_UTR 70.0%
TGCCCTGCCCCAGGCTGGTG+TGG - chr3_2:75463868-75463887 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 75460506 75466061 75460506 ID=Msa0425130;Name=Msa0425130
chr3_2 mRNA 75460506 75466061 75460506 ID=Msa0425130-mRNA-1;Parent=Msa0425130;Name=Msa0425130-mRNA-1;_AED=0.18;_eAED=0.18;_QI=1241|0.9|0.90|1|0.2|0.27|11|291|191
chr3_2 exon 75460506 75460830 75460506 ID=Msa0425130-mRNA-1:exon:19308;Parent=Msa0425130-mRNA-1
chr3_2 exon 75461169 75461254 75461169 ID=Msa0425130-mRNA-1:exon:19309;Parent=Msa0425130-mRNA-1
chr3_2 exon 75461346 75461416 75461346 ID=Msa0425130-mRNA-1:exon:19310;Parent=Msa0425130-mRNA-1
chr3_2 exon 75461922 75462013 75461922 ID=Msa0425130-mRNA-1:exon:19311;Parent=Msa0425130-mRNA-1
chr3_2 exon 75462906 75462949 75462906 ID=Msa0425130-mRNA-1:exon:19312;Parent=Msa0425130-mRNA-1
chr3_2 exon 75463047 75463118 75463047 ID=Msa0425130-mRNA-1:exon:19313;Parent=Msa0425130-mRNA-1
chr3_2 exon 75463826 75463911 75463826 ID=Msa0425130-mRNA-1:exon:19314;Parent=Msa0425130-mRNA-1
chr3_2 exon 75464319 75464666 75464319 ID=Msa0425130-mRNA-1:exon:19315;Parent=Msa0425130-mRNA-1
chr3_2 exon 75464709 75465020 75464709 ID=Msa0425130-mRNA-1:exon:19316;Parent=Msa0425130-mRNA-1
chr3_2 exon 75465299 75465367 75465299 ID=Msa0425130-mRNA-1:exon:19317;Parent=Msa0425130-mRNA-1
chr3_2 exon 75465459 75466061 75465459 ID=Msa0425130-mRNA-1:exon:19318;Parent=Msa0425130-mRNA-1
chr3_2 five_prime_UTR 75460506 75460830 75460506 ID=Msa0425130-mRNA-1:five_prime_utr;Parent=Msa0425130-mRNA-1
chr3_2 five_prime_UTR 75461169 75461254 75461169 ID=Msa0425130-mRNA-1:five_prime_utr;Parent=Msa0425130-mRNA-1
chr3_2 five_prime_UTR 75461346 75461416 75461346 ID=Msa0425130-mRNA-1:five_prime_utr;Parent=Msa0425130-mRNA-1
chr3_2 five_prime_UTR 75461922 75462013 75461922 ID=Msa0425130-mRNA-1:five_prime_utr;Parent=Msa0425130-mRNA-1
chr3_2 five_prime_UTR 75462906 75462949 75462906 ID=Msa0425130-mRNA-1:five_prime_utr;Parent=Msa0425130-mRNA-1
chr3_2 five_prime_UTR 75463047 75463118 75463047 ID=Msa0425130-mRNA-1:five_prime_utr;Parent=Msa0425130-mRNA-1
chr3_2 five_prime_UTR 75463826 75463911 75463826 ID=Msa0425130-mRNA-1:five_prime_utr;Parent=Msa0425130-mRNA-1
chr3_2 five_prime_UTR 75464319 75464666 75464319 ID=Msa0425130-mRNA-1:five_prime_utr;Parent=Msa0425130-mRNA-1
chr3_2 five_prime_UTR 75464709 75464825 75464709 ID=Msa0425130-mRNA-1:five_prime_utr;Parent=Msa0425130-mRNA-1
chr3_2 CDS 75464826 75465020 75464826 ID=Msa0425130-mRNA-1:cds;Parent=Msa0425130-mRNA-1
chr3_2 CDS 75465299 75465367 75465299 ID=Msa0425130-mRNA-1:cds;Parent=Msa0425130-mRNA-1
chr3_2 CDS 75465459 75465770 75465459 ID=Msa0425130-mRNA-1:cds;Parent=Msa0425130-mRNA-1
chr3_2 three_prime_UTR 75465771 75466061 75465771 ID=Msa0425130-mRNA-1:three_prime_utr;Parent=Msa0425130-mRNA-1
Gene Sequence

>Msa0425130

ATGATTGATGTTCTCGCTATGAACCTTGGGTTTGTCGTAGCAGGCCTTCACAGATGGTGCTTAGAGAATACCCTAAAAGAGTTGCTTGGTGAATGTGTATCAGATAGTGTTATCGTTGAGCACTCAAATGATGGTTCAGGAACTGGTGCAGTGGTGCTGCACTTCTTGCTGCTTCTCATTCTTATTACCTTGATGCTTGGTAACGACGAGGAGAATGCTGCATATGTTGAGACTGTTTATGAGTTAGCTTATCAAAATCCTGTGGAAAATATTGAAGTGGTTGATTCAAGCAACAAAGACGAAGTTGCTGCTGCTGATTCGGTTGTGACTCCAACTAGCAAACCTTTGGGAAAGCGGTCTACTGATAGTGTGGAATTACTTGATGATGTTGTTGTGCATAGTTCTGATGGATCTGCTACAAAAGAGCTAAAGCTGGTTGATTCAACCAACAAAGATGATGTTGCCGCAGTTGATTCAGTTGTGACTCCAACTAGCAAATCTTTGGGAAAGCGATCTGCTGATAGCGTCGAATCAGCAGATGATATTGTTTTGATTGATTGTGACAAAAGAGCCTAA
Protein sequence

>Msa0425130

MIDVLAMNLGFVVAGLHRWCLENTLKELLGECVSDSVIVEHSNDGSGTGAVVLHFLLLLILITLMLGNDEENAAYVETVYELAYQNPVENIEVVDSSNKDEVAAADSVVTPTSKPLGKRSTDSVELLDDVVVHSSDGSATKELKLVDSTNKDDVAAVDSVVTPTSKSLGKRSADSVESADDIVLIDCDKRA*