AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0141980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141980 MtrunA17_Chr4g0014311 34.884 129 63 2 103 216 132 254 3.81e-13 68.2
Msa0141980 MtrunA17_Chr7g0270411 36.449 107 61 2 111 217 1 100 3.32e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 98 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCCAACCTTTATCGTAAT+TGG 0.190441 1_4:-768978 Msa0141980:CDS
TTTCTCAATCAATTGAATTA+TGG 0.220514 1_4:-768042 Msa0141980:three_prime_UTR
TCTCATTCTTATTACCTTGA+TGG 0.273691 1_4:-769064 Msa0141980:CDS
CTTGAAAGATTATCGAGTTT+TGG 0.287971 1_4:-768254 Msa0141980:three_prime_UTR
GACTCCAACTAGCAAATCTT+TGG 0.288947 1_4:-768387 Msa0141980:CDS
ACTTTCTGAGAATTGTTATA+GGG 0.300909 1_4:-772625 Msa0141980:five_prime_UTR
TCATTGCATGTTGCTTCAAT+TGG 0.303065 1_4:+773250 None:intergenic
AAGCAGCAAAAGAGCTTAAC+TGG 0.304895 1_4:-772036 Msa0141980:CDS
GTTTCCGTTAATGATTGTTT+TGG 0.312248 1_4:-768087 Msa0141980:three_prime_UTR
CCTCCATGGGACATCAGTTT+TGG 0.319706 1_4:-768896 Msa0141980:CDS
CACTTTCTGAGAATTGTTAT+AGG 0.327100 1_4:-772626 Msa0141980:five_prime_UTR
CATTGCATGTTGCTTCAATT+GGG 0.333919 1_4:+773251 None:intergenic
GGAATTCGCTTCCGCCGTTC+CGG 0.357453 1_4:-772802 Msa0141980:five_prime_UTR
CTCCGATCAGCCTTTACAAT+TGG 0.367849 1_4:+772097 None:intergenic
TTACCTTCTGATTGTAAATC+CGG 0.385309 1_4:+772783 None:intergenic
CGAAGTTGCTGCTGCTGATT+CGG 0.386996 1_4:-768570 Msa0141980:CDS
GGGAACAGGAGAGGAAGAAG+GGG 0.395804 1_4:-773490 Msa0141980:five_prime_UTR
TCAAATGATGGTTCAGGAAC+TGG 0.397688 1_4:-769114 Msa0141980:CDS
AATTCCAAAACAATCATTAA+CGG 0.403566 1_4:+768083 None:intergenic
GCCTAAGCTTGTGCGTGTTA+AGG 0.403824 1_4:-768299 Msa0141980:exon
GACTCCAACTAGCAAACCTT+TGG 0.409498 1_4:-768543 Msa0141980:CDS
GTTGTTTACATAGGTTGGTC+AGG 0.410633 1_4:-769719 Msa0141980:intron
TGCGGCAACATCATCTTTGT+TGG 0.415154 1_4:+768424 None:intergenic
TGAGAGTGAGGGAGAGAAGT+AGG 0.416451 1_4:+773319 None:intergenic
AGAAGGGGAACGAGAGAAAC+GGG 0.425800 1_4:-773510 Msa0141980:five_prime_UTR
GGAACAGGAGAGGAAGAAGG+GGG 0.438627 1_4:-773489 Msa0141980:five_prime_UTR
CGGGAACAGGAGAGGAAGAA+GGG 0.440770 1_4:-773491 Msa0141980:five_prime_UTR
TGACTGAGGAAATAATTAAT+CGG 0.442440 1_4:-768927 Msa0141980:CDS
TAGGTTTGTTGAGTTAATTA+AGG 0.445154 1_4:-770905 Msa0141980:intron
GAGCACTCAAATGATGGTTC+AGG 0.447112 1_4:-769120 Msa0141980:CDS
ACGGGAACAGGAGAGGAAGA+AGG 0.451499 1_4:-773492 Msa0141980:five_prime_UTR
TTAGAAAATTCCAATTGTAA+AGG 0.455191 1_4:-772107 Msa0141980:intron
AGAAGGAAAGGCTGAGAGTG+AGG 0.457126 1_4:+773307 None:intergenic
CAGAAAGAACGGCAGAGGAG+AGG 0.457306 1_4:-773462 Msa0141980:five_prime_UTR
TTTCCCAAAGATTTGCTAGT+TGG 0.458073 1_4:+768383 None:intergenic
AGCTGCGCCAATTACGATAA+AGG 0.462212 1_4:+768971 None:intergenic
ATCGTTGAGCACTCAAATGA+TGG 0.463132 1_4:-769126 Msa0141980:CDS
AAGAAGGGGAACGAGAGAAA+CGG 0.467039 1_4:-773511 Msa0141980:five_prime_UTR
CAAATCTGCAGAATTGTAGA+TGG 0.467950 1_4:-772839 Msa0141980:five_prime_UTR
GAACAGGAGAGGAAGAAGGG+GGG 0.469668 1_4:-773488 Msa0141980:five_prime_UTR
GGAACGAGAGAAACGGGAAC+AGG 0.471493 1_4:-773504 Msa0141980:five_prime_UTR
AGTGATTAGAAGCATAATCA+AGG 0.477232 1_4:-773209 Msa0141980:intron
AGAAAGAACGGCAGAGGAGA+GGG 0.477733 1_4:-773461 Msa0141980:five_prime_UTR
ATTAATTATTTCCTCAGTCA+TGG 0.483885 1_4:+768930 None:intergenic
GTAGATGGCCTTGCTGTTTG+AGG 0.485273 1_4:-772824 Msa0141980:five_prime_UTR
GGCGACAGAAAGAACGGCAG+AGG 0.485795 1_4:-773467 Msa0141980:five_prime_UTR
ACTCCAACTAGCAAATCTTT+GGG 0.491743 1_4:-768386 Msa0141980:CDS
GCTCAACTCATTAGTAGTAA+TGG 0.498019 1_4:-770928 Msa0141980:CDS
GTTGTTGTGCATAGTTCTGA+TGG 0.499773 1_4:-768482 Msa0141980:CDS
TTTCCCAAAGGTTTGCTAGT+TGG 0.503027 1_4:+768539 None:intergenic
TAGATGGCCTTGCTGTTTGA+GGG 0.504380 1_4:-772823 Msa0141980:five_prime_UTR
ATGATAATTGCTAACCATCA+AGG 0.517087 1_4:+769050 None:intergenic
TCCAACACTCCGATCTGCAC+TGG 0.517110 1_4:-773410 Msa0141980:five_prime_UTR
AAATGAAAGGACAACAGACT+TGG 0.519997 1_4:+768216 None:intergenic
ACTCCAACTAGCAAACCTTT+GGG 0.520423 1_4:-768542 Msa0141980:CDS
GGGGAGGTTGAAGAATTAAA+GGG 0.520644 1_4:+773272 None:intergenic
TAGACTTTACATTTATCCCA+TGG 0.531503 1_4:+768869 None:intergenic
TGCTACAAAAGAGCTAAAGC+TGG 0.538283 1_4:-768456 Msa0141980:CDS
GAAGGAAAGGCTGAGAGTGA+GGG 0.541277 1_4:+773308 None:intergenic
ATTGCATGTTGCTTCAATTG+GGG 0.544114 1_4:+773252 None:intergenic
ACCTTAACACGCACAAGCTT+AGG 0.546106 1_4:+768298 None:intergenic
GTGTTGGACGGCGAGGTCGA+CGG 0.546335 1_4:+773425 None:intergenic
ACCAGTGCAGATCGGAGTGT+TGG 0.547707 1_4:+773409 None:intergenic
TTGCATGTTGCTTCAATTGG+GGG 0.548668 1_4:+773253 None:intergenic
TTCCAATTGTAAAGGCTGAT+CGG 0.556362 1_4:-772099 Msa0141980:five_prime_UTR
TAAACAACTTCAGCATCTCT+AGG 0.562490 1_4:+772073 None:intergenic
AAGGGTCTGATGTAGAAAGA+AGG 0.565269 1_4:+773290 None:intergenic
TTTCAAGAGACTTCACTCAT+CGG 0.565680 1_4:+768270 None:intergenic
CTTTCTGAGAATTGTTATAG+GGG 0.565811 1_4:-772624 Msa0141980:intron
ATAGGTTGGTCAGGATGTTG+TGG 0.569173 1_4:-769710 Msa0141980:intron
TCTAATCACTTAAAGCATGT+AGG 0.575251 1_4:+773222 None:intergenic
CTAGCAAACCTTTGGGAAAG+CGG 0.578566 1_4:-768535 Msa0141980:CDS
GCGCCAATTACGATAAAGGT+TGG 0.582465 1_4:+768975 None:intergenic
TCAGTAGACCGCTTTCCCAA+AGG 0.587701 1_4:+768527 None:intergenic
GAGTGAGGGAGAGAAGTAGG+AGG 0.589607 1_4:+773322 None:intergenic
GAGAGAAACGGGAACAGGAG+AGG 0.594571 1_4:-773499 Msa0141980:five_prime_UTR
GGTCCAAAACTGATGTCCCA+TGG 0.597484 1_4:+768893 None:intergenic
AAATCAAAACCAGTGCAGAT+CGG 0.601823 1_4:+773401 None:intergenic
GTTCCGGATTTACAATCAGA+AGG 0.606276 1_4:-772786 Msa0141980:intron
GATCGGAGTGTTGGACGGCG+AGG 0.614383 1_4:+773418 None:intergenic
AAAGCGGTCTACTGATAGTG+TGG 0.622760 1_4:-768519 Msa0141980:CDS
AACTCATTAGTAGTAATGGT+AGG 0.633936 1_4:-770924 Msa0141980:CDS
CATATGTTTCTGTAAGTGAG+AGG 0.636244 1_4:+773348 None:intergenic
AGTGAGGGAGAGAAGTAGGA+GGG 0.638656 1_4:+773323 None:intergenic
GTGCAGATCGGAGTGTTGGA+CGG 0.639439 1_4:+773413 None:intergenic
TTCTGATTGTAAATCCGGAA+CGG 0.639789 1_4:+772788 None:intergenic
GCGAATTCCCTCAAACAGCA+AGG 0.650955 1_4:+772816 None:intergenic
TCTGATGTAGAAAGAAGGAA+AGG 0.652049 1_4:+773295 None:intergenic
AGAAAAGCAATTGAGAAACA+AGG 0.655094 1_4:-769679 Msa0141980:intron
CATGCAGGAAAATATTGAAG+TGG 0.661188 1_4:-768612 Msa0141980:intron
TGGTTCAGGAACTGGTGCAG+TGG 0.662719 1_4:-769106 Msa0141980:CDS
CAAAAGAATGACCATGACTG+AGG 0.669987 1_4:-768941 Msa0141980:CDS
ACTTTACATTTATCCCATGG+AGG 0.673211 1_4:+768872 None:intergenic
TTGGACGGCGAGGTCGACGG+CGG 0.673722 1_4:+773428 None:intergenic
CCAAAACTGATGTCCCATGG+AGG 0.713087 1_4:+768896 None:intergenic
GTTAGCTTATCAAAATCCTG+TGG 0.715142 1_4:-768718 Msa0141980:intron
TGATTGTAAATCCGGAACGG+CGG 0.718622 1_4:+772791 None:intergenic
AGTCACAACTGAATCAACTG+CGG 0.772555 1_4:+768406 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTCTAATTTAAAACAA+TGG - chr1_4:770839-770858 Msa0141980:intron 10.0%
!!! ATTTAGTTTAGAAAAAATTA+AGG + chr1_4:770907-770926 None:intergenic 10.0%
!! CTAATAATCAAAAAAATAAC+TGG + chr1_4:768435-768454 None:intergenic 15.0%
!!! TTTTATGATTAAACTGATTT+AGG - chr1_4:768627-768646 Msa0141980:intron 15.0%
!! TATATAAAAATCTTTCACTT+TGG - chr1_4:768973-768992 Msa0141980:CDS 15.0%
!! AAAAAAAATCATCTATCTTA+GGG + chr1_4:768999-769018 None:intergenic 15.0%
!! TAAAAAAAATCATCTATCTT+AGG + chr1_4:769000-769019 None:intergenic 15.0%
!!! TAAGATAGATGATTTTTTTT+AGG - chr1_4:768999-769018 Msa0141980:CDS 15.0%
!!! AAGATAGATGATTTTTTTTA+GGG - chr1_4:769000-769019 Msa0141980:CDS 15.0%
!!! AACCCTTTTTTTTAATATTA+TGG - chr1_4:769199-769218 Msa0141980:intron 15.0%
!!! ACCCTTTTTTTTAATATTAT+GGG - chr1_4:769200-769219 Msa0141980:intron 15.0%
!!! CATATAATATTTGCAAATTT+TGG + chr1_4:769639-769658 None:intergenic 15.0%
!!! TTTTATACTCAATAAGTTTT+TGG - chr1_4:770796-770815 Msa0141980:intron 15.0%
!!! ATTTATATTCTGATTTTTCA+AGG - chr1_4:771259-771278 Msa0141980:intron 15.0%
!!! TTTATATTCTGATTTTTCAA+GGG - chr1_4:771260-771279 Msa0141980:intron 15.0%
!!! ATTTATAGCAAGAATTTTTT+TGG - chr1_4:771588-771607 Msa0141980:intron 15.0%
!!! TTTATAGCAAGAATTTTTTT+GGG - chr1_4:771589-771608 Msa0141980:intron 15.0%
!! AAACTAAGTATAAAATGTAA+AGG + chr1_4:771794-771813 None:intergenic 15.0%
!! TTTAGTCTAATTTATTAAAG+TGG - chr1_4:771951-771970 Msa0141980:intron 15.0%
!!! AGATTAAAGCTTTTATAAAA+CGG - chr1_4:772032-772051 Msa0141980:intron 15.0%
!!! AAAACTTTAAAAACTATACT+TGG + chr1_4:772206-772225 None:intergenic 15.0%
!! AAAAAACAAAACAAAATGAA+AGG + chr1_4:773337-773356 None:intergenic 15.0%
!!! TGGTTTTGATTTTATTGAAT+TGG - chr1_4:768147-768166 Msa0141980:three_prime_UTR 20.0%
!!! TTGTTATTATCTGAAGTTTT+TGG - chr1_4:768532-768551 Msa0141980:CDS 20.0%
!!! TTTTTGATTTTGTTTGTTGT+TGG - chr1_4:768587-768606 Msa0141980:CDS 20.0%
!!! GTTTTTTGATTTTTGAAAAC+TGG - chr1_4:768823-768842 Msa0141980:intron 20.0%
!! TTAAAGTAGTAACTTTATCT+TGG - chr1_4:769062-769081 Msa0141980:CDS 20.0%
!! CCCCATAATATTAAAAAAAA+GGG + chr1_4:769204-769223 None:intergenic 20.0%
!!! CCCTTTTTTTTAATATTATG+GGG - chr1_4:769201-769220 Msa0141980:intron 20.0%
!! ACCCCATAATATTAAAAAAA+AGG + chr1_4:769205-769224 None:intergenic 20.0%
!! TTAGAAAATTCCAATTGTAA+AGG - chr1_4:769430-769449 Msa0141980:intron 20.0%
!!! TGGTTATTCAATTCTTTTTA+CGG - chr1_4:769591-769610 Msa0141980:intron 20.0%
!!! ATTTTGAGTCATTTTTAGAA+AGG - chr1_4:769822-769841 Msa0141980:intron 20.0%
!! GTCAAATAGTGTAATTATTA+TGG - chr1_4:769862-769881 Msa0141980:intron 20.0%
!!! GTATATGTAAATTTTAGCAA+TGG + chr1_4:770132-770151 None:intergenic 20.0%
!!! AAACTTCTATTGTTTTATGA+AGG - chr1_4:770396-770415 Msa0141980:intron 20.0%
!! ATAGTTGTATGTAGATAAAA+TGG - chr1_4:770511-770530 Msa0141980:intron 20.0%
!! AGAATTAGATATTTCACATT+TGG - chr1_4:771029-771048 Msa0141980:intron 20.0%
!! GAATTAGATATTTCACATTT+GGG - chr1_4:771030-771049 Msa0141980:intron 20.0%
!! TCATAGCAATAAAAACAATT+CGG + chr1_4:771234-771253 None:intergenic 20.0%
!!! TGCTTATTTTCTTTCAATTT+TGG - chr1_4:771309-771328 Msa0141980:intron 20.0%
!! TTAATATATTGATGAAGATG+AGG - chr1_4:771403-771422 Msa0141980:intron 20.0%
!! ATGTTCTTATCACAATTAAT+TGG - chr1_4:771475-771494 Msa0141980:intron 20.0%
!!! TAAAAAATCGGTCAAATTTT+CGG + chr1_4:771549-771568 None:intergenic 20.0%
!! CAACCAAAATCATAAAAAAT+CGG + chr1_4:771561-771580 None:intergenic 20.0%
!!! TCAAATATTTTGATCTTTCA+TGG - chr1_4:771679-771698 Msa0141980:intron 20.0%
!!! AGTTTTATTGTTGTTTACAT+AGG - chr1_4:771809-771828 Msa0141980:intron 20.0%
!!! AGGTTAATTTTATCACTAAT+TGG - chr1_4:772073-772092 Msa0141980:exon 20.0%
!!! TTTTAAAGTTTTGAAATACG+AGG - chr1_4:772214-772233 Msa0141980:intron 20.0%
!! AATTCCAAAACAATCATTAA+CGG + chr1_4:773457-773476 None:intergenic 20.0%
!! TTTCTCAATCAATTGAATTA+TGG - chr1_4:773495-773514 Msa0141980:five_prime_UTR 20.0%
!!! AGTTTTTGGTTGAGAAATTT+TGG - chr1_4:768546-768565 Msa0141980:CDS 25.0%
!! AATTTTCATGCAGGAAAATT+GGG - chr1_4:768674-768693 Msa0141980:intron 25.0%
!! ACTTTCTGAGAATTGTTATA+GGG - chr1_4:768912-768931 Msa0141980:CDS 25.0%
! AATGGTTAAGGAATCAAAAA+AGG + chr1_4:769156-769175 None:intergenic 25.0%
!! TTACGGAAATTCAATGTTTT+TGG - chr1_4:769608-769627 Msa0141980:intron 25.0%
!! TGTTATATACATTTTGAGCA+CGG - chr1_4:769759-769778 Msa0141980:intron 25.0%
!! CTGTCTTTGAACAAAATTTT+TGG - chr1_4:769786-769805 Msa0141980:intron 25.0%
!!! TCAATTATTTTCAAGTAGTG+AGG - chr1_4:769897-769916 Msa0141980:intron 25.0%
!!! TATGTAAATTTTAGCAATGG+TGG + chr1_4:770129-770148 None:intergenic 25.0%
! TATAAGAAGATAACTGTTTG+AGG + chr1_4:770261-770280 None:intergenic 25.0%
!!! CAATCATTTTTGGAAAGAAT+TGG + chr1_4:770301-770320 None:intergenic 25.0%
! TCTTTCCAAAAATGATTGAT+TGG - chr1_4:770303-770322 Msa0141980:intron 25.0%
! CTTTCCAAAAATGATTGATT+GGG - chr1_4:770304-770323 Msa0141980:intron 25.0%
!! AATTCCCAATCAATCATTTT+TGG + chr1_4:770311-770330 None:intergenic 25.0%
!!! ATTGTTTTATGAAGGTAACT+TGG - chr1_4:770404-770423 Msa0141980:intron 25.0%
!!! TAGGTTTGTTGAGTTAATTA+AGG - chr1_4:770632-770651 Msa0141980:intron 25.0%
! TAACAACAGGAAAAGAAAAA+GGG + chr1_4:770755-770774 None:intergenic 25.0%
! ATAACAACAGGAAAAGAAAA+AGG + chr1_4:770756-770775 None:intergenic 25.0%
! AGTTACACAATAATAACAAC+AGG + chr1_4:770768-770787 None:intergenic 25.0%
!!! TTTTTGGTTTAGCAATTTCT+TGG - chr1_4:770812-770831 Msa0141980:intron 25.0%
!!! AAAGTCTTATTGGATTACTT+TGG - chr1_4:770956-770975 Msa0141980:CDS 25.0%
! ATATCTAATTCTATGCATGA+GGG + chr1_4:771021-771040 None:intergenic 25.0%
! AATATCTAATTCTATGCATG+AGG + chr1_4:771022-771041 None:intergenic 25.0%
! TACTTCATTACGAATAACTT+TGG - chr1_4:771141-771160 Msa0141980:intron 25.0%
! CATAGCAATAAAAACAATTC+GGG + chr1_4:771233-771252 None:intergenic 25.0%
! TATGACACATATAACCAATA+AGG - chr1_4:771341-771360 Msa0141980:intron 25.0%
! ATGACACATATAACCAATAA+GGG - chr1_4:771342-771361 Msa0141980:intron 25.0%
! GTATAGAAATCTCCTAAAAT+TGG - chr1_4:771430-771449 Msa0141980:intron 25.0%
!!! AAATGAGTTTTTTAGTCTAC+AGG - chr1_4:771507-771526 Msa0141980:intron 25.0%
!!! AATGAGTTTTTTAGTCTACA+GGG - chr1_4:771508-771527 Msa0141980:intron 25.0%
!!! TGACCGATTTTTTATGATTT+TGG - chr1_4:771555-771574 Msa0141980:intron 25.0%
!!! TTATTGTTGTTTACATAGGT+TGG - chr1_4:771813-771832 Msa0141980:intron 25.0%
! AGTCTAATTTATTAAAGTGG+TGG - chr1_4:771954-771973 Msa0141980:intron 25.0%
!! TAAAGCTTTTATAAAACGGT+TGG - chr1_4:772036-772055 Msa0141980:CDS 25.0%
!! AAAGCTTTTATAAAACGGTT+GGG - chr1_4:772037-772056 Msa0141980:CDS 25.0%
!! ATTTTATCACTAATTGGATC+TGG - chr1_4:772079-772098 Msa0141980:exon 25.0%
!! TAAAAAAAGATTTTGTGCCA+AGG + chr1_4:772113-772132 None:intergenic 25.0%
! ATTAATTATTTCCTCAGTCA+TGG + chr1_4:772610-772629 None:intergenic 25.0%
! TGACTGAGGAAATAATTAAT+CGG - chr1_4:772610-772629 Msa0141980:intron 25.0%
!!! GGAAATAATTAATCGGTTTT+TGG - chr1_4:772617-772636 Msa0141980:intron 25.0%
! GCTCAAAAAAAGAAATCAAA+AGG + chr1_4:772753-772772 None:intergenic 25.0%
!!! TTGATTTCTTTTTTTGAGCT+TGG - chr1_4:772754-772773 Msa0141980:intron 25.0%
! TGATCAAAAAAATATACCAC+AGG + chr1_4:772838-772857 None:intergenic 25.0%
! ATCATTTCTGCAGTTTATAA+AGG - chr1_4:772854-772873 Msa0141980:intron 25.0%
TCTAATCACTTAAAGCATGT+AGG + chr1_4:768318-768337 None:intergenic 30.0%
! AGTGATTAGAAGCATAATCA+AGG - chr1_4:768328-768347 Msa0141980:CDS 30.0%
! TTAGAAGCATAATCAAGGTT+TGG - chr1_4:768333-768352 Msa0141980:CDS 30.0%
!! TTTCCCCTTTTAATCGATTT+AGG - chr1_4:768489-768508 Msa0141980:CDS 30.0%
!! TTCCCCTTTTAATCGATTTA+GGG - chr1_4:768490-768509 Msa0141980:CDS 30.0%
AACCCTAAATCGATTAAAAG+GGG + chr1_4:768495-768514 None:intergenic 30.0%
GAACCCTAAATCGATTAAAA+GGG + chr1_4:768496-768515 None:intergenic 30.0%
!!! TGAGAAATTTTGGTTGATTC+TGG - chr1_4:768556-768575 Msa0141980:CDS 30.0%
! TTAAACTGATTTAGGCTGAT+TGG - chr1_4:768635-768654 Msa0141980:intron 30.0%
! TAAACTGATTTAGGCTGATT+GGG - chr1_4:768636-768655 Msa0141980:intron 30.0%
! TTTTGGATGAATTTTCATGC+AGG - chr1_4:768665-768684 Msa0141980:intron 30.0%
! GAATTTTCATGCAGGAAAAT+TGG - chr1_4:768673-768692 Msa0141980:intron 30.0%
TTACCTTCTGATTGTAAATC+CGG + chr1_4:768757-768776 None:intergenic 30.0%
ATTGCGATGACATAAATTTG+GGG + chr1_4:768792-768811 None:intergenic 30.0%
GATTGCGATGACATAAATTT+GGG + chr1_4:768793-768812 None:intergenic 30.0%
! CACTTTCTGAGAATTGTTAT+AGG - chr1_4:768911-768930 Msa0141980:CDS 30.0%
! CTTTCTGAGAATTGTTATAG+GGG - chr1_4:768913-768932 Msa0141980:CDS 30.0%
ATCAAGCTATTGTTTAGTAC+AGG - chr1_4:769377-769396 Msa0141980:intron 30.0%
AAAGAATTGAATAACCAGAG+AGG + chr1_4:769588-769607 None:intergenic 30.0%
TCTTCATCTAATCAGAAATG+TGG - chr1_4:769669-769688 Msa0141980:intron 30.0%
CTTCATCTAATCAGAAATGT+GGG - chr1_4:769670-769689 Msa0141980:intron 30.0%
! TGTTTTCCAATGATGAGAAT+TGG - chr1_4:769712-769731 Msa0141980:intron 30.0%
GAACAATGTGTATTCTCAAT+AGG - chr1_4:769955-769974 Msa0141980:intron 30.0%
! ATAGTTGCTTTCATCTATAC+AGG - chr1_4:769983-770002 Msa0141980:intron 30.0%
! TAGTTGCTTTCATCTATACA+GGG - chr1_4:769984-770003 Msa0141980:intron 30.0%
! ATGTAAATTTTGTGTCTCCA+GGG + chr1_4:770208-770227 None:intergenic 30.0%
! TATGTAAATTTTGTGTCTCC+AGG + chr1_4:770209-770228 None:intergenic 30.0%
AAGGTTACAAGTCTACAATA+CGG - chr1_4:770440-770459 Msa0141980:intron 30.0%
! GCAAATTTTCTCTCATTTCT+CGG - chr1_4:770581-770600 Msa0141980:intron 30.0%
! CAAATTTTCTCTCATTTCTC+GGG - chr1_4:770582-770601 Msa0141980:intron 30.0%
AACTCATTAGTAGTAATGGT+AGG - chr1_4:770613-770632 Msa0141980:intron 30.0%
GTTACTCATCAATAACTCTT+TGG + chr1_4:770875-770894 None:intergenic 30.0%
!! TTTTCCACTAATTTTGAGTG+AGG - chr1_4:770927-770946 Msa0141980:CDS 30.0%
TATCTAATTCTATGCATGAG+GGG + chr1_4:771020-771039 None:intergenic 30.0%
TCTTATACCATCTCAAAGTT+TGG - chr1_4:771096-771115 Msa0141980:intron 30.0%
!!! TCTGATTTTTCAAGGGAATA+AGG - chr1_4:771267-771286 Msa0141980:intron 30.0%
!!! CTGATTTTTCAAGGGAATAA+GGG - chr1_4:771268-771287 Msa0141980:intron 30.0%
!! TTCTTTCAATTTTGGTGAAC+AGG - chr1_4:771317-771336 Msa0141980:intron 30.0%
ATATTGATGAAGATGAGGTA+TGG - chr1_4:771408-771427 Msa0141980:intron 30.0%
!!! TGATCTTTCATGGTGTTTTT+TGG - chr1_4:771689-771708 Msa0141980:intron 30.0%
CATCAAAGCAATTAGTATTC+AGG + chr1_4:771746-771765 None:intergenic 30.0%
TGTAAAGGTGAAAGAAAAAC+AGG + chr1_4:771779-771798 None:intergenic 30.0%
AGAAAAGCAATTGAGAAACA+AGG - chr1_4:771858-771877 Msa0141980:intron 30.0%
CTAATTTATTAAAGTGGTGG+AGG - chr1_4:771957-771976 Msa0141980:intron 30.0%
!!! ATGCTATTTTCCTCCATTTT+TGG - chr1_4:771980-771999 Msa0141980:intron 30.0%
ATCACATGTCTTATAGTAGT+TGG - chr1_4:772137-772156 Msa0141980:intron 30.0%
!! TGGTACTTGCTATTTACATT+TGG - chr1_4:772157-772176 Msa0141980:intron 30.0%
TCTCATTCTTATTACCTTGA+TGG - chr1_4:772473-772492 Msa0141980:intron 30.0%
ATGATAATTGCTAACCATCA+AGG + chr1_4:772490-772509 None:intergenic 30.0%
TAGACTTTACATTTATCCCA+TGG + chr1_4:772671-772690 None:intergenic 30.0%
! CTTGAAAGATTATCGAGTTT+TGG - chr1_4:773283-773302 Msa0141980:five_prime_UTR 30.0%
! GTTTCCGTTAATGATTGTTT+TGG - chr1_4:773450-773469 Msa0141980:five_prime_UTR 30.0%
AAATCAAAACCAGTGCAGAT+CGG + chr1_4:768139-768158 None:intergenic 35.0%
! CATATGTTTCTGTAAGTGAG+AGG + chr1_4:768192-768211 None:intergenic 35.0%
TCTGATGTAGAAAGAAGGAA+AGG + chr1_4:768245-768264 None:intergenic 35.0%
! ATTGCATGTTGCTTCAATTG+GGG + chr1_4:768288-768307 None:intergenic 35.0%
! CATTGCATGTTGCTTCAATT+GGG + chr1_4:768289-768308 None:intergenic 35.0%
! TCATTGCATGTTGCTTCAAT+TGG + chr1_4:768290-768309 None:intergenic 35.0%
! AAGACTGATTCAGCCAATAA+GGG + chr1_4:768374-768393 None:intergenic 35.0%
! AGTCTTCTCTTTTCATGTTC+TGG - chr1_4:768388-768407 Msa0141980:CDS 35.0%
! GTCTTCTCTTTTCATGTTCT+GGG - chr1_4:768389-768408 Msa0141980:CDS 35.0%
GGAACCCTAAATCGATTAAA+AGG + chr1_4:768497-768516 None:intergenic 35.0%
TAACAACAACCTCCAAAAAG+AGG + chr1_4:768518-768537 None:intergenic 35.0%
!! GTTGTTGGATGTTTCTGTTT+TGG - chr1_4:768602-768621 Msa0141980:CDS 35.0%
! AAACTGATTTAGGCTGATTG+GGG - chr1_4:768637-768656 Msa0141980:intron 35.0%
CAAATCTGCAGAATTGTAGA+TGG - chr1_4:768698-768717 Msa0141980:intron 35.0%
TTCTGATTGTAAATCCGGAA+CGG + chr1_4:768752-768771 None:intergenic 35.0%
CGATTGCGATGACATAAATT+TGG + chr1_4:768794-768813 None:intergenic 35.0%
! TTTGTTATCAAGTGCCTTGA+GGG + chr1_4:769041-769060 None:intergenic 35.0%
ATTCCTTAACCATTGTCCTA+AGG - chr1_4:769162-769181 Msa0141980:intron 35.0%
TTCCTTAACCATTGTCCTAA+GGG - chr1_4:769163-769182 Msa0141980:intron 35.0%
AAGTTCATTGACACAACATG+TGG - chr1_4:769258-769277 Msa0141980:intron 35.0%
ACAACATGTGGAAAATGTGT+CGG - chr1_4:769270-769289 Msa0141980:intron 35.0%
TTCCAATTGTAAAGGCTGAT+CGG - chr1_4:769438-769457 Msa0141980:intron 35.0%
TAAACAACTTCAGCATCTCT+AGG + chr1_4:769467-769486 None:intergenic 35.0%
CTAACTCCAATTCTCATCAT+TGG + chr1_4:769721-769740 None:intergenic 35.0%
TGAGAATTGGAGTTAGTTAG+CGG - chr1_4:769725-769744 Msa0141980:intron 35.0%
TTCAAGTAGTGAGGAATAGA+TGG - chr1_4:769906-769925 Msa0141980:intron 35.0%
TCAAGTAGTGAGGAATAGAT+GGG - chr1_4:769907-769926 Msa0141980:intron 35.0%
CATTTAGAAGCTTAGAGTCA+CGG - chr1_4:770060-770079 Msa0141980:intron 35.0%
ATTTAGAAGCTTAGAGTCAC+GGG - chr1_4:770061-770080 Msa0141980:intron 35.0%
! GCTCATTGCCAAAAGTTTTA+TGG - chr1_4:770232-770251 Msa0141980:intron 35.0%
! TGAGGCAACCATAAAACTTT+TGG + chr1_4:770243-770262 None:intergenic 35.0%
TGCTAATCGCTGTCATAATT+AGG + chr1_4:770357-770376 None:intergenic 35.0%
ACTTGTAACCTTATACACAG+GGG + chr1_4:770432-770451 None:intergenic 35.0%
GACTTGTAACCTTATACACA+GGG + chr1_4:770433-770452 None:intergenic 35.0%
AGACTTGTAACCTTATACAC+AGG + chr1_4:770434-770453 None:intergenic 35.0%
AACTATCGATAATGCAGTGT+TGG + chr1_4:770497-770516 None:intergenic 35.0%
GCTCAACTCATTAGTAGTAA+TGG - chr1_4:770609-770628 Msa0141980:intron 35.0%
! TAAATTCATTGACTGATGCG+TGG - chr1_4:770696-770715 Msa0141980:intron 35.0%
ACAGGAAAAGAAAAAGGGAA+CGG + chr1_4:770750-770769 None:intergenic 35.0%
! TGGTCTATCATTAGTTGATG+TGG - chr1_4:770976-770995 Msa0141980:CDS 35.0%
! GGAGTGAAGTTTTGCAATTT+TGG - chr1_4:771051-771070 Msa0141980:intron 35.0%
GAAGTATAGAGAAACATGCA+AGG + chr1_4:771127-771146 None:intergenic 35.0%
TTCAGCATTTAGACCCTTAT+TGG + chr1_4:771358-771377 None:intergenic 35.0%
GAAATCTCCTAAAATTGGTG+TGG - chr1_4:771435-771454 Msa0141980:intron 35.0%
AGGTGAAAGAAAAACAGGAA+AGG + chr1_4:771774-771793 None:intergenic 35.0%
!!! TCCTCCATTTTTGGTTGTTA+TGG - chr1_4:771989-772008 Msa0141980:intron 35.0%
!!! ATTTTTGGTTGTTATGGCAG+CGG - chr1_4:771995-772014 Msa0141980:intron 35.0%
TGCACACAAAAAAGGTTTGT+AGG - chr1_4:772237-772256 Msa0141980:intron 35.0%
AATACCCTAAAAGAGTTGCT+TGG - chr1_4:772366-772385 Msa0141980:intron 35.0%
! TTCACCAAGCAACTCTTTTA+GGG + chr1_4:772373-772392 None:intergenic 35.0%
! ATTCACCAAGCAACTCTTTT+AGG + chr1_4:772374-772393 None:intergenic 35.0%
ATGCCAACCTTTATCGTAAT+TGG - chr1_4:772559-772578 Msa0141980:intron 35.0%
ACTTTACATTTATCCCATGG+AGG + chr1_4:772668-772687 None:intergenic 35.0%
TGTCTCACTCTGCATATAAT+TGG + chr1_4:772726-772745 None:intergenic 35.0%
! GTTAGCTTATCAAAATCCTG+TGG - chr1_4:772819-772838 Msa0141980:five_prime_UTR 35.0%
CATGCAGGAAAATATTGAAG+TGG - chr1_4:772925-772944 Msa0141980:intron 35.0%
ACTCCAACTAGCAAATCTTT+GGG - chr1_4:773151-773170 Msa0141980:intron 35.0%
!! TTTCCCAAAGATTTGCTAGT+TGG + chr1_4:773157-773176 None:intergenic 35.0%
TTTCAAGAGACTTCACTCAT+CGG + chr1_4:773270-773289 None:intergenic 35.0%
AAATGAAAGGACAACAGACT+TGG + chr1_4:773324-773343 None:intergenic 35.0%
GCATAAAAACACCATAAGTC+TGG + chr1_4:773404-773423 None:intergenic 35.0%
AAGGGTCTGATGTAGAAAGA+AGG + chr1_4:768250-768269 None:intergenic 40.0%
GGGGAGGTTGAAGAATTAAA+GGG + chr1_4:768268-768287 None:intergenic 40.0%
! TTGCATGTTGCTTCAATTGG+GGG + chr1_4:768287-768306 None:intergenic 40.0%
CCAATAAGGGAAGGAGAATA+AGG + chr1_4:768361-768380 None:intergenic 40.0%
CCTTATTCTCCTTCCCTTAT+TGG - chr1_4:768358-768377 Msa0141980:CDS 40.0%
! GAAGACTGATTCAGCCAATA+AGG + chr1_4:768375-768394 None:intergenic 40.0%
! TCTGGGTTTGCTTGTGAAAT+TGG - chr1_4:768406-768425 Msa0141980:CDS 40.0%
!! CGATTTAGGGTTCCTCTTTT+TGG - chr1_4:768503-768522 Msa0141980:CDS 40.0%
!! TTTAGGGTTCCTCTTTTTGG+AGG - chr1_4:768506-768525 Msa0141980:CDS 40.0%
GTTCCGGATTTACAATCAGA+AGG - chr1_4:768751-768770 Msa0141980:CDS 40.0%
!! GTTTGTTATCAAGTGCCTTG+AGG + chr1_4:769042-769061 None:intergenic 40.0%
! TTTTGCTAACCAATGCCCTT+AGG + chr1_4:769181-769200 None:intergenic 40.0%
AAGCAGCAAAAGAGCTTAAC+TGG - chr1_4:769501-769520 Msa0141980:intron 40.0%
AGCTTAACTGGAAGTAAGTG+TGG - chr1_4:769513-769532 Msa0141980:intron 40.0%
GAGGAATAGATGGGAGTTAT+AGG - chr1_4:769916-769935 Msa0141980:intron 40.0%
!! AAGTTCATTGCTTTTGACGC+TGG + chr1_4:770558-770577 None:intergenic 40.0%
CAGTCCTCACTCAAAATTAG+TGG + chr1_4:770934-770953 None:intergenic 40.0%
! GAGGACTGTCAAAGTCTTAT+TGG - chr1_4:770946-770965 Msa0141980:CDS 40.0%
! ATTTTGGACATGCCACAAGT+TGG - chr1_4:771067-771086 Msa0141980:intron 40.0%
ATAAGAGTCGATCCAACTTG+TGG + chr1_4:771082-771101 None:intergenic 40.0%
! AACACAGCCACACCAATTTT+AGG + chr1_4:771445-771464 None:intergenic 40.0%
!!! AGTTTTTTAGTCTACAGGGC+TGG - chr1_4:771512-771531 Msa0141980:intron 40.0%
!! GTTGTTTACATAGGTTGGTC+AGG - chr1_4:771818-771837 Msa0141980:intron 40.0%
GCCATAACAACCAAAAATGG+AGG + chr1_4:771993-772012 None:intergenic 40.0%
GCTGCCATAACAACCAAAAA+TGG + chr1_4:771996-772015 None:intergenic 40.0%
ATAAAACGGTTGGGAGTTCA+AGG - chr1_4:772046-772065 Msa0141980:CDS 40.0%
ATACGAGGTGCACACAAAAA+AGG - chr1_4:772229-772248 Msa0141980:intron 40.0%
CAAAAAAGGTTTGTAGGAGC+AGG - chr1_4:772243-772262 Msa0141980:intron 40.0%
ATGTTCTCGCTATGAACCTT+GGG - chr1_4:772303-772322 Msa0141980:intron 40.0%
ATCGTTGAGCACTCAAATGA+TGG - chr1_4:772411-772430 Msa0141980:intron 40.0%
TCAAATGATGGTTCAGGAAC+TGG - chr1_4:772423-772442 Msa0141980:intron 40.0%
CAAAAGAATGACCATGACTG+AGG - chr1_4:772596-772615 Msa0141980:intron 40.0%
!! ATCACTTTTCTCATGCATGC+AGG - chr1_4:772910-772929 Msa0141980:intron 40.0%
ACTCCAACTAGCAAACCTTT+GGG - chr1_4:772995-773014 Msa0141980:intron 40.0%
!! TTTCCCAAAGGTTTGCTAGT+TGG + chr1_4:773001-773020 None:intergenic 40.0%
!! GTTGTTGTGCATAGTTCTGA+TGG - chr1_4:773055-773074 Msa0141980:intron 40.0%
TGCTACAAAAGAGCTAAAGC+TGG - chr1_4:773081-773100 Msa0141980:intron 40.0%
AGTCACAACTGAATCAACTG+CGG + chr1_4:773134-773153 None:intergenic 40.0%
GACTCCAACTAGCAAATCTT+TGG - chr1_4:773150-773169 Msa0141980:intron 40.0%
AAGAAGGGGAACGAGAGAAA+CGG - chr1_4:768026-768045 Msa0141980:three_prime_UTR 45.0%
GGGGGAGGTTGAAGAATTAA+AGG + chr1_4:768269-768288 None:intergenic 45.0%
CTGATTCAGCCAATAAGGGA+AGG + chr1_4:768370-768389 None:intergenic 45.0%
!! TAGATGGCCTTGCTGTTTGA+GGG - chr1_4:768714-768733 Msa0141980:intron 45.0%
TGATTGTAAATCCGGAACGG+CGG + chr1_4:768749-768768 None:intergenic 45.0%
AATGCTAACAAGTGCCCTCA+AGG - chr1_4:769024-769043 Msa0141980:CDS 45.0%
TGCCCTTAGGACAATGGTTA+AGG + chr1_4:769168-769187 None:intergenic 45.0%
! AACCATTGTCCTAAGGGCAT+TGG - chr1_4:769169-769188 Msa0141980:intron 45.0%
AACCAATGCCCTTAGGACAA+TGG + chr1_4:769174-769193 None:intergenic 45.0%
CTCCGATCAGCCTTTACAAT+TGG + chr1_4:769443-769462 None:intergenic 45.0%
GTTGTTAAAGCTCTCCTCTC+TGG - chr1_4:769571-769590 Msa0141980:intron 45.0%
CTATAGATCTTTCGTTGCCC+TGG - chr1_4:770188-770207 Msa0141980:intron 45.0%
TGATGCGTGGTGCTCATTAA+AGG - chr1_4:770709-770728 Msa0141980:intron 45.0%
CGTGGTGCTCATTAAAGGTT+CGG - chr1_4:770714-770733 Msa0141980:intron 45.0%
! GGCATGTCCAAACTTTGAGA+TGG + chr1_4:771106-771125 None:intergenic 45.0%
!! CTGCAGACTTCTGAAATTGC+AGG + chr1_4:771182-771201 None:intergenic 45.0%
!! ATAGGTTGGTCAGGATGTTG+TGG - chr1_4:771827-771846 Msa0141980:intron 45.0%
GGTTGGGAGTTCAAGGATAT+AGG - chr1_4:772053-772072 Msa0141980:CDS 45.0%
AAGGTTTGTAGGAGCAGGTT+AGG - chr1_4:772248-772267 Msa0141980:intron 45.0%
GATGTTCTCGCTATGAACCT+TGG - chr1_4:772302-772321 Msa0141980:intron 45.0%
TCTCTAAGCACCATCTGTGA+AGG + chr1_4:772347-772366 None:intergenic 45.0%
GAGCACTCAAATGATGGTTC+AGG - chr1_4:772417-772436 Msa0141980:intron 45.0%
GCGCCAATTACGATAAAGGT+TGG + chr1_4:772565-772584 None:intergenic 45.0%
AGCTGCGCCAATTACGATAA+AGG + chr1_4:772569-772588 None:intergenic 45.0%
!! AATCGGTTTTTGGACCTCCA+TGG - chr1_4:772627-772646 Msa0141980:five_prime_UTR 45.0%
!! ATCGGTTTTTGGACCTCCAT+GGG - chr1_4:772628-772647 Msa0141980:five_prime_UTR 45.0%
!!! ACATCAGTTTTGGACCTCCA+TGG - chr1_4:772651-772670 Msa0141980:five_prime_UTR 45.0%
!!! CATCAGTTTTGGACCTCCAT+GGG - chr1_4:772652-772671 Msa0141980:five_prime_UTR 45.0%
!!! TTTTGAGCTTGGTAACGACG+AGG - chr1_4:772765-772784 Msa0141980:intron 45.0%
GACTCCAACTAGCAAACCTT+TGG - chr1_4:772994-773013 Msa0141980:intron 45.0%
TGCGGCAACATCATCTTTGT+TGG + chr1_4:773116-773135 None:intergenic 45.0%
ACCTTAACACGCACAAGCTT+AGG + chr1_4:773242-773261 None:intergenic 45.0%
! TTTTGCTGCTGCCAGACTTA+TGG - chr1_4:773390-773409 Msa0141980:five_prime_UTR 45.0%
AGAAGGGGAACGAGAGAAAC+GGG - chr1_4:768027-768046 Msa0141980:three_prime_UTR 50.0%
AGAAAGAACGGCAGAGGAGA+GGG - chr1_4:768076-768095 Msa0141980:three_prime_UTR 50.0%
AGTGAGGGAGAGAAGTAGGA+GGG + chr1_4:768217-768236 None:intergenic 50.0%
TGAGAGTGAGGGAGAGAAGT+AGG + chr1_4:768221-768240 None:intergenic 50.0%
GAAGGAAAGGCTGAGAGTGA+GGG + chr1_4:768232-768251 None:intergenic 50.0%
AGAAGGAAAGGCTGAGAGTG+AGG + chr1_4:768233-768252 None:intergenic 50.0%
! CATGTTGCTTCAATTGGGGG+AGG + chr1_4:768284-768303 None:intergenic 50.0%
! GGCTGATTGGGGACTGTTTT+TGG - chr1_4:768648-768667 Msa0141980:intron 50.0%
!! GTAGATGGCCTTGCTGTTTG+AGG - chr1_4:768713-768732 Msa0141980:intron 50.0%
GCGAATTCCCTCAAACAGCA+AGG + chr1_4:768724-768743 None:intergenic 50.0%
!! ACTTGGTGCCCCTGTGTATA+AGG - chr1_4:770421-770440 Msa0141980:intron 50.0%
ATATTAAGATGCCCTGCCCC+AGG + chr1_4:771390-771409 None:intergenic 50.0%
TAGCTGCTACGACAAACCCA+AGG + chr1_4:772322-772341 None:intergenic 50.0%
TTGGGTTTGTCGTAGCAGCT+AGG - chr1_4:772321-772340 Msa0141980:intron 50.0%
CCAAAACTGATGTCCCATGG+AGG + chr1_4:772644-772663 None:intergenic 50.0%
! CCTCCATGGGACATCAGTTT+TGG - chr1_4:772641-772660 Msa0141980:five_prime_UTR 50.0%
GGTCCAAAACTGATGTCCCA+TGG + chr1_4:772647-772666 None:intergenic 50.0%
! CGAAGTTGCTGCTGCTGATT+CGG - chr1_4:772967-772986 Msa0141980:intron 50.0%
GCCTAAGCTTGTGCGTGTTA+AGG - chr1_4:773238-773257 Msa0141980:five_prime_UTR 50.0%
GGAACGAGAGAAACGGGAAC+AGG - chr1_4:768033-768052 Msa0141980:three_prime_UTR 55.0%
GAGAGAAACGGGAACAGGAG+AGG - chr1_4:768038-768057 Msa0141980:three_prime_UTR 55.0%
ACGGGAACAGGAGAGGAAGA+AGG - chr1_4:768045-768064 Msa0141980:three_prime_UTR 55.0%
CGGGAACAGGAGAGGAAGAA+GGG - chr1_4:768046-768065 Msa0141980:three_prime_UTR 55.0%
GGGAACAGGAGAGGAAGAAG+GGG - chr1_4:768047-768066 Msa0141980:three_prime_UTR 55.0%
GGAACAGGAGAGGAAGAAGG+GGG - chr1_4:768048-768067 Msa0141980:three_prime_UTR 55.0%
GAACAGGAGAGGAAGAAGGG+GGG - chr1_4:768049-768068 Msa0141980:three_prime_UTR 55.0%
AAGGGGGGCGACAGAAAGAA+CGG - chr1_4:768064-768083 Msa0141980:three_prime_UTR 55.0%
CAGAAAGAACGGCAGAGGAG+AGG - chr1_4:768075-768094 Msa0141980:three_prime_UTR 55.0%
!! GTGCAGATCGGAGTGTTGGA+CGG + chr1_4:768127-768146 None:intergenic 55.0%
TCCAACACTCCGATCTGCAC+TGG - chr1_4:768127-768146 Msa0141980:three_prime_UTR 55.0%
ACCAGTGCAGATCGGAGTGT+TGG + chr1_4:768131-768150 None:intergenic 55.0%
GAGTGAGGGAGAGAAGTAGG+AGG + chr1_4:768218-768237 None:intergenic 55.0%
AATGCTGAACCACACCAGCC+TGG - chr1_4:771369-771388 Msa0141980:intron 55.0%
ATGCTGAACCACACCAGCCT+GGG - chr1_4:771370-771389 Msa0141980:intron 55.0%
TGGATCTGGCAGCTAAGCCT+TGG - chr1_4:772093-772112 Msa0141980:five_prime_UTR 55.0%
AGCAGCTAGGCCTTCACAGA+TGG - chr1_4:772334-772353 Msa0141980:intron 55.0%
TGGTTCAGGAACTGGTGCAG+TGG - chr1_4:772431-772450 Msa0141980:intron 55.0%
GGCGACAGAAAGAACGGCAG+AGG - chr1_4:768070-768089 Msa0141980:three_prime_UTR 60.0%
GGAATTCGCTTCCGCCGTTC+CGG - chr1_4:768735-768754 Msa0141980:CDS 60.0%
TGCTGAACCACACCAGCCTG+GGG - chr1_4:771371-771390 Msa0141980:intron 60.0%
GTGTTGGACGGCGAGGTCGA+CGG + chr1_4:768115-768134 None:intergenic 65.0%
!! GATCGGAGTGTTGGACGGCG+AGG + chr1_4:768122-768141 None:intergenic 65.0%
AACCACACCAGCCTGGGGCA+GGG - chr1_4:771376-771395 Msa0141980:intron 65.0%
TAAGATGCCCTGCCCCAGGC+TGG + chr1_4:771386-771405 None:intergenic 65.0%
TTGGACGGCGAGGTCGACGG+CGG + chr1_4:768112-768131 None:intergenic 70.0%
GAACCACACCAGCCTGGGGC+AGG - chr1_4:771375-771394 Msa0141980:intron 70.0%
TGCCCTGCCCCAGGCTGGTG+TGG + chr1_4:771381-771400 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 768025 773534 768025 ID=Msa0141980;Name=Msa0141980
chr1_4 mRNA 768025 773534 768025 ID=Msa0141980-mRNA-1;Parent=Msa0141980;Name=Msa0141980-mRNA-1;_AED=0.26;_eAED=0.27;_QI=519|0.5|0.55|1|0.62|0.66|9|291|285
chr1_4 exon 768025 768627 768025 ID=Msa0141980-mRNA-1:exon:228;Parent=Msa0141980-mRNA-1
chr1_4 exon 768719 768787 768719 ID=Msa0141980-mRNA-1:exon:227;Parent=Msa0141980-mRNA-1
chr1_4 exon 768879 769156 768879 ID=Msa0141980-mRNA-1:exon:226;Parent=Msa0141980-mRNA-1
chr1_4 exon 769680 769728 769680 ID=Msa0141980-mRNA-1:exon:225;Parent=Msa0141980-mRNA-1
chr1_4 exon 770906 771000 770906 ID=Msa0141980-mRNA-1:exon:224;Parent=Msa0141980-mRNA-1
chr1_4 exon 772034 772125 772034 ID=Msa0141980-mRNA-1:exon:223;Parent=Msa0141980-mRNA-1
chr1_4 exon 772625 772695 772625 ID=Msa0141980-mRNA-1:exon:222;Parent=Msa0141980-mRNA-1
chr1_4 exon 772787 772872 772787 ID=Msa0141980-mRNA-1:exon:221;Parent=Msa0141980-mRNA-1
chr1_4 exon 773210 773534 773210 ID=Msa0141980-mRNA-1:exon:220;Parent=Msa0141980-mRNA-1
chr1_4 five_prime_UTR 773210 773534 773210 ID=Msa0141980-mRNA-1:five_prime_utr;Parent=Msa0141980-mRNA-1
chr1_4 five_prime_UTR 772787 772872 772787 ID=Msa0141980-mRNA-1:five_prime_utr;Parent=Msa0141980-mRNA-1
chr1_4 five_prime_UTR 772625 772695 772625 ID=Msa0141980-mRNA-1:five_prime_utr;Parent=Msa0141980-mRNA-1
chr1_4 five_prime_UTR 772089 772125 772089 ID=Msa0141980-mRNA-1:five_prime_utr;Parent=Msa0141980-mRNA-1
chr1_4 CDS 772034 772088 772034 ID=Msa0141980-mRNA-1:cds;Parent=Msa0141980-mRNA-1
chr1_4 CDS 770906 771000 770906 ID=Msa0141980-mRNA-1:cds;Parent=Msa0141980-mRNA-1
chr1_4 CDS 769680 769728 769680 ID=Msa0141980-mRNA-1:cds;Parent=Msa0141980-mRNA-1
chr1_4 CDS 768879 769156 768879 ID=Msa0141980-mRNA-1:cds;Parent=Msa0141980-mRNA-1
chr1_4 CDS 768719 768787 768719 ID=Msa0141980-mRNA-1:cds;Parent=Msa0141980-mRNA-1
chr1_4 CDS 768316 768627 768316 ID=Msa0141980-mRNA-1:cds;Parent=Msa0141980-mRNA-1
chr1_4 three_prime_UTR 768025 768315 768025 ID=Msa0141980-mRNA-1:three_prime_utr;Parent=Msa0141980-mRNA-1
Gene Sequence

>Msa0141980

ATGCTGAAGTTGTTTATGCATCAACAAAAAAAGCAGCAAAAGAGCTTAACTGGAACGTCAAAAGCAATGAACTTTAAGCAAATTTTCTCTCATTTCTCGGGATCTGCTCAACTCATTAGTAGTAATGGTAGGTTTGTTGAGTTAATTAAGGTTGGTCAGGATGTTGTGGCTGAATTGAGAAAAGCAATTGAGAAACAAGATAGTGTTATCGTTGAGCACTCAAATGATGGTTCAGGAACTGGTGCAGTGGTGCTGCACTTCTTGCTGCTTCTCATTCTTATTACCTTGATGGTTAGCAATTATCATGTTAAGATGTTTATCGATAAACGAATGTTGTTCAAAGTTGAAGTGAGTGATGCCAACCTTTATCGTAATTGGCGCAGCTATACTGTCAAAAGAATGACCATGACTGAGGAAATAATTAATCGGTTTTTGGACCTCCATGGGACATCAGTTTTGGACCTCCATGGGATAAATCTTGGTAACGACGAGGAGAATGCTGCATATGTTGAGACTGTTTATGAGTTAGCTTATCAAAATCCTGTGGAAAATATTGAAGTGGTTGATTCAAGCAACAAAGACGAAGTTGCTGCTGCTGATTCGGTTGTGACTCCAACTAGCAAACCTTTGGGAAAGCGGTCTACTGATAGTGTGGAATTACTTGATGATGTTGTTGTGCATAGTTCTGATGGATCTGCTACAAAAGAGCTAAAGCTGGTTGATTCAACCAACAAAGATGATGTTGCCGCAGTTGATTCAGTTGTGACTCCAACTAGCAAATCTTTGGGAAAGCGATCTGCTGATAGCGTCGAATCAGCAGATGATATTGTTTTGATTGATTGTGACAAAAGAGCCTAA
Protein sequence

>Msa0141980

MLKLFMHQQKKQQKSLTGTSKAMNFKQIFSHFSGSAQLISSNGRFVELIKVGQDVVAELRKAIEKQDSVIVEHSNDGSGTGAVVLHFLLLLILITLMVSNYHVKMFIDKRMLFKVEVSDANLYRNWRSYTVKRMTMTEEIINRFLDLHGTSVLDLHGINLGNDEENAAYVETVYELAYQNPVENIEVVDSSNKDEVAAADSVVTPTSKPLGKRSTDSVELLDDVVVHSSDGSATKELKLVDSTNKDDVAAVDSVVTPTSKSLGKRSADSVESADDIVLIDCDKRA*