Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425980 | XP_003602410.1 | 96.429 | 420 | 15 | 0 | 1 | 420 | 1 | 420 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425980 | sp|Q7XUA8|ILL5_ORYSJ | 61.713 | 397 | 150 | 2 | 24 | 419 | 20 | 415 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425980 | Q0GXX5 | 96.429 | 420 | 15 | 0 | 1 | 420 | 1 | 420 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0425980 | Msa0426060 | 0.965996 | 2.469167e-125 | -8.615850e-47 |
| Msa0425980 | Msa0426200 | 0.989986 | 1.544794e-180 | -8.615850e-47 |
| Msa0425980 | Msa0436900 | 0.814546 | 1.457812e-51 | -8.615850e-47 |
| Msa0425980 | Msa1220710 | 0.812742 | 3.637670e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425980 | MtrunA17_Chr3g0128101 | 96.429 | 420 | 15 | 0 | 1 | 420 | 1 | 420 | 0.0 | 840 |
| Msa0425980 | MtrunA17_Chr3g0124881 | 52.334 | 407 | 188 | 2 | 18 | 418 | 69 | 475 | 2.46e-146 | 424 |
| Msa0425980 | MtrunA17_Chr2g0330721 | 53.093 | 388 | 178 | 4 | 30 | 415 | 49 | 434 | 6.03e-145 | 420 |
| Msa0425980 | MtrunA17_Chr8g0364301 | 49.526 | 422 | 202 | 4 | 7 | 420 | 12 | 430 | 1.37e-143 | 416 |
| Msa0425980 | MtrunA17_Chr8g0371561 | 51.571 | 382 | 183 | 1 | 30 | 411 | 49 | 428 | 1.55e-142 | 413 |
| Msa0425980 | MtrunA17_Chr2g0330661 | 51.554 | 386 | 187 | 0 | 30 | 415 | 44 | 429 | 3.57e-141 | 410 |
| Msa0425980 | MtrunA17_Chr2g0328461 | 50.777 | 386 | 190 | 0 | 30 | 415 | 48 | 433 | 7.02e-141 | 410 |
| Msa0425980 | MtrunA17_Chr8g0341471 | 49.644 | 421 | 205 | 4 | 5 | 418 | 11 | 431 | 1.11e-140 | 409 |
| Msa0425980 | MtrunA17_Chr2g0330671 | 46.411 | 418 | 216 | 2 | 6 | 415 | 16 | 433 | 6.36e-136 | 397 |
| Msa0425980 | MtrunA17_Chr2g0328481 | 41.026 | 312 | 139 | 1 | 151 | 417 | 4 | 315 | 5.54e-74 | 234 |
| Msa0425980 | MtrunA17_Chr8g0364461 | 42.071 | 309 | 147 | 7 | 108 | 413 | 96 | 375 | 3.59e-66 | 217 |
| Msa0425980 | MtrunA17_Chr2g0330711 | 60.526 | 114 | 45 | 0 | 38 | 151 | 48 | 161 | 5.43e-48 | 161 |
| Msa0425980 | MtrunA17_Chr2g0328471 | 53.788 | 132 | 60 | 1 | 38 | 169 | 48 | 178 | 4.01e-46 | 157 |
| Msa0425980 | MtrunA17_Chr3g0128141 | 69.767 | 86 | 17 | 3 | 1 | 81 | 1 | 82 | 2.78e-31 | 115 |
| Msa0425980 | MtrunA17_Chr3g0128121 | 83.673 | 49 | 6 | 1 | 123 | 169 | 1 | 49 | 1.44e-19 | 82.0 |
| Msa0425980 | MtrunA17_Chr3g0128111 | 59.036 | 83 | 27 | 2 | 170 | 250 | 1 | 78 | 2.81e-18 | 84.0 |
| Msa0425980 | MtrunA17_Chr1g0158601 | 57.407 | 54 | 23 | 0 | 201 | 254 | 6 | 59 | 1.43e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425980 | AT5G54140.1 | 58.413 | 416 | 170 | 2 | 4 | 418 | 7 | 420 | 3.79e-174 | 494 |
| Msa0425980 | AT3G02875.1 | 50.251 | 398 | 196 | 1 | 23 | 418 | 33 | 430 | 5.84e-145 | 420 |
| Msa0425980 | AT1G51760.1 | 49.519 | 416 | 206 | 2 | 6 | 417 | 10 | 425 | 1.10e-144 | 419 |
| Msa0425980 | AT1G51780.1 | 49.522 | 418 | 207 | 2 | 6 | 419 | 10 | 427 | 3.18e-142 | 413 |
| Msa0425980 | AT5G56660.1 | 52.368 | 380 | 178 | 2 | 38 | 417 | 49 | 425 | 2.26e-137 | 400 |
| Msa0425980 | AT5G56650.1 | 50.263 | 380 | 186 | 2 | 38 | 417 | 48 | 424 | 8.01e-130 | 381 |
| Msa0425980 | AT1G44350.1 | 51.250 | 400 | 188 | 2 | 20 | 417 | 67 | 461 | 6.76e-127 | 375 |
| Msa0425980 | AT3G02875.2 | 53.405 | 279 | 128 | 1 | 23 | 299 | 33 | 311 | 2.89e-104 | 312 |
| Msa0425980 | AT5G56650.2 | 55.133 | 263 | 116 | 1 | 38 | 300 | 48 | 308 | 1.56e-99 | 299 |
| Msa0425980 | AT3G02875.3 | 54.661 | 236 | 105 | 1 | 23 | 256 | 33 | 268 | 2.27e-88 | 271 |
Find 103 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAGACAAACAATAATT+TGG | 0.156803 | 3_2:-76420230 | Msa0425980:five_prime_UTR |
| GTAAATCGCAATTTCAAATT+AGG | 0.168397 | 3_2:-76420402 | Msa0425980:five_prime_UTR |
| TGTTCTTGGAAAGCCAATTC+TGG | 0.188078 | 3_2:+76420015 | None:intergenic |
| ATCCCATCATATGTAAAATT+TGG | 0.213215 | 3_2:-76417728 | Msa0425980:CDS |
| TTCGCCTACCATCGCCTTCT+TGG | 0.222489 | 3_2:+76416524 | None:intergenic |
| GGCTACATCATTGGCAATAT+TGG | 0.227340 | 3_2:-76418398 | Msa0425980:CDS |
| GCTCATGCTACTATGCTATT+AGG | 0.227578 | 3_2:-76419473 | Msa0425980:CDS |
| ACTGGTATTGTTGCTCAAAT+TGG | 0.240045 | 3_2:-76419922 | Msa0425980:CDS |
| CCATGACATTTAGACATAAA+AGG | 0.245825 | 3_2:+76420424 | None:intergenic |
| CTCATGCTACTATGCTATTA+GGG | 0.260514 | 3_2:-76419472 | Msa0425980:CDS |
| CATCGCTATTCGTGCTGATA+TGG | 0.271047 | 3_2:-76419881 | Msa0425980:CDS |
| GGGCACTTGTGTTGTGTTCT+TGG | 0.285265 | 3_2:+76420001 | None:intergenic |
| CCATCGCCTTCTTGGCTTCA+TGG | 0.291544 | 3_2:+76416532 | None:intergenic |
| TATGGATGCACTCCCTTTGC+AGG | 0.301563 | 3_2:-76419863 | Msa0425980:intron |
| ATGCATCCAGCAGCTGTAAA+AGG | 0.313338 | 3_2:+76418490 | None:intergenic |
| TTAGCAACTGGATATGTATA+AGG | 0.319340 | 3_2:+76419946 | None:intergenic |
| TGTTAGACCGAAAACATTAC+TGG | 0.321264 | 3_2:-76420324 | Msa0425980:five_prime_UTR |
| CATTACTGGATTTCAAATTC+AGG | 0.322344 | 3_2:-76420310 | Msa0425980:five_prime_UTR |
| ATTGTTGCTCAAATTGGTTC+TGG | 0.333604 | 3_2:-76419916 | Msa0425980:CDS |
| GAAGTTGTGCTTTCCACTTC+AGG | 0.335971 | 3_2:-76420282 | Msa0425980:five_prime_UTR |
| TCATTGACAACAGCAGGATA+TGG | 0.358726 | 3_2:+76416615 | None:intergenic |
| TAAAATTTGGAGGTACTCTA+AGG | 0.372216 | 3_2:-76417715 | Msa0425980:CDS |
| GATGAGGAAGCTCTTTCAAT+TGG | 0.378444 | 3_2:-76416393 | Msa0425980:CDS |
| GAAGAGACAAACAATAATTT+GGG | 0.383469 | 3_2:-76420229 | Msa0425980:five_prime_UTR |
| GATTCATCAACACCCAGAAT+TGG | 0.394773 | 3_2:-76420028 | Msa0425980:CDS |
| GGAGCTATAGCATCGATTCC+AGG | 0.399066 | 3_2:-76418514 | Msa0425980:CDS |
| GGTGCATGCTTTCCGTCGTC+TGG | 0.400724 | 3_2:+76417690 | None:intergenic |
| CCAATGGAAAACAATATTCC+AGG | 0.411904 | 3_2:+76416474 | None:intergenic |
| ACATATCCAGTTGCTAAAAC+TGG | 0.412373 | 3_2:-76419940 | Msa0425980:CDS |
| TGTCAAGTTCACTGCGGATA+AGG | 0.413444 | 3_2:+76419980 | None:intergenic |
| TCCACTGCTGGCTACATCAT+TGG | 0.424877 | 3_2:-76418407 | Msa0425980:CDS |
| GTTCTTGGAAAGCCAATTCT+GGG | 0.436845 | 3_2:+76420016 | None:intergenic |
| CCTCTAGCTCCCTCCTCAGC+AGG | 0.446876 | 3_2:+76418619 | None:intergenic |
| CGCAGTGAACTTGACAAACT+TGG | 0.449993 | 3_2:-76419973 | Msa0425980:CDS |
| ATGCACTTCCCTTTGTACCT+TGG | 0.451159 | 3_2:-76420130 | Msa0425980:CDS |
| ATCAGCACGAATAGCGATGA+TGG | 0.452920 | 3_2:+76419885 | None:intergenic |
| TTTCTCATTTCTGATTCCAA+TGG | 0.462714 | 3_2:+76416458 | None:intergenic |
| GTCAAGTTCACTGCGGATAA+GGG | 0.470836 | 3_2:+76419981 | None:intergenic |
| TTTGCAGGTTATTGAAGGAC+AGG | 0.472506 | 3_2:-76416691 | Msa0425980:intron |
| TTTCAGACAACGATTAAAAG+AGG | 0.472816 | 3_2:-76417666 | Msa0425980:intron |
| GAGAAAGAGACAACATTTGA+TGG | 0.473847 | 3_2:-76420184 | Msa0425980:exon |
| TTGAAGTTCCACACACACTA+AGG | 0.474587 | 3_2:+76420538 | None:intergenic |
| TGCTTTCCACTTCAGGAACA+AGG | 0.475863 | 3_2:-76420275 | Msa0425980:five_prime_UTR |
| TAATGTTTGCAGGTTATTGA+AGG | 0.477164 | 3_2:-76416696 | Msa0425980:intron |
| GTTCCACACACACTAAGGTT+AGG | 0.480393 | 3_2:+76420543 | None:intergenic |
| TCTTTGTCATTGACAACAGC+AGG | 0.485579 | 3_2:+76416609 | None:intergenic |
| ATTGATGCTACGACATCTAC+TGG | 0.492280 | 3_2:-76418535 | Msa0425980:CDS |
| AGAGTTGGCCGACTTCTGCT+TGG | 0.497776 | 3_2:-76416567 | Msa0425980:CDS |
| TCAGCGCAAAGATAAGCTTA+AGG | 0.505619 | 3_2:-76419432 | Msa0425980:intron |
| CAGTGGATCTACAGCCTGGT+GGG | 0.506382 | 3_2:+76418423 | None:intergenic |
| CACTGCAACAGCTTGTCTCA+AGG | 0.507821 | 3_2:-76418375 | Msa0425980:CDS |
| CCAGCAGCTGTAAAAGGCCC+TGG | 0.508450 | 3_2:+76418496 | None:intergenic |
| GATACATCAGTAATAACAAA+AGG | 0.511130 | 3_2:+76416308 | None:intergenic |
| ACAAGGGTCAACGAGTGGCT+TGG | 0.513160 | 3_2:-76420258 | Msa0425980:five_prime_UTR |
| GTTGACCCTTGTTCCTGAAG+TGG | 0.515450 | 3_2:+76420269 | None:intergenic |
| AAACACAATAAGTACATGAA+TGG | 0.518642 | 3_2:+76420158 | None:intergenic |
| TGGTTAGGAACTTGTTGAGT+GGG | 0.518955 | 3_2:-76419543 | Msa0425980:intron |
| CCATCATATGTAAAATTTGG+AGG | 0.522089 | 3_2:-76417725 | Msa0425980:CDS |
| GATTCTGAGTTCAGCCCAGA+AGG | 0.530256 | 3_2:-76420082 | Msa0425980:CDS |
| CATCTACATGTCGAGAGAGT+TGG | 0.530513 | 3_2:-76416582 | Msa0425980:CDS |
| GGAATCAGAAATGAGAAAGT+AGG | 0.531619 | 3_2:-76416453 | Msa0425980:CDS |
| GCCTCACAAATGATAAAAGA+AGG | 0.534222 | 3_2:-76418595 | Msa0425980:CDS |
| GAATACAAGAGCAAAATTGA+TGG | 0.536081 | 3_2:-76419521 | Msa0425980:CDS |
| ACACTTCACCAAGGTACAAA+GGG | 0.537229 | 3_2:+76420122 | None:intergenic |
| AGCTGCTGGATGCATCTTTG+AGG | 0.539162 | 3_2:-76418482 | Msa0425980:CDS |
| ACTGCAACAGCTTGTCTCAA+GGG | 0.552626 | 3_2:-76418374 | Msa0425980:CDS |
| TAAAGTGGGGTAACCTGCAA+AGG | 0.552801 | 3_2:+76419850 | None:intergenic |
| ATATGTTGATTTCAAAGAAG+AGG | 0.556877 | 3_2:-76416646 | Msa0425980:CDS |
| CACACTTCACCAAGGTACAA+AGG | 0.561395 | 3_2:+76420121 | None:intergenic |
| CAAAATCTCTCATCTACTTG+AGG | 0.561815 | 3_2:-76420518 | Msa0425980:five_prime_UTR |
| GCCAATGATGTAGCCAGCAG+TGG | 0.567435 | 3_2:+76418406 | None:intergenic |
| AAATGTCCATGAAGCCAAGA+AGG | 0.567889 | 3_2:-76416538 | Msa0425980:CDS |
| GAGCTATAGCATCGATTCCA+GGG | 0.569617 | 3_2:-76418513 | Msa0425980:CDS |
| TAACCTAACCTTAGTGTGTG+TGG | 0.571216 | 3_2:-76420546 | None:intergenic |
| AGTGGATCTACAGCCTGGTG+GGG | 0.571496 | 3_2:+76418424 | None:intergenic |
| CCAGGCTGTAGATCCACTGC+TGG | 0.573212 | 3_2:-76418419 | Msa0425980:CDS |
| CCAGCAGTGGATCTACAGCC+TGG | 0.576768 | 3_2:+76418419 | None:intergenic |
| TAGCTCCCTCCTCAGCAGGT+TGG | 0.580361 | 3_2:+76418623 | None:intergenic |
| GTTACTTACGTCAAAGGAGG+GGG | 0.581861 | 3_2:-76417764 | Msa0425980:CDS |
| GTGGATCTACAGCCTGGTGG+GGG | 0.591638 | 3_2:+76418425 | None:intergenic |
| CCTGCTGAGGAGGGAGCTAG+AGG | 0.592496 | 3_2:-76418619 | Msa0425980:CDS |
| GCAGTGGATCTACAGCCTGG+TGG | 0.592846 | 3_2:+76418422 | None:intergenic |
| CAACATATGCATTACATCTG+TGG | 0.596314 | 3_2:+76416661 | None:intergenic |
| CTGTCTGTTACTTACGTCAA+AGG | 0.596467 | 3_2:-76417770 | Msa0425980:CDS |
| TGTTACTTACGTCAAAGGAG+GGG | 0.597194 | 3_2:-76417765 | Msa0425980:CDS |
| AAAGTGGGGTAACCTGCAAA+GGG | 0.604350 | 3_2:+76419851 | None:intergenic |
| GAAGCCAAGAAGGCGATGGT+AGG | 0.605651 | 3_2:-76416528 | Msa0425980:CDS |
| GCACATACTTGACTATGAAG+AGG | 0.609774 | 3_2:+76418343 | None:intergenic |
| TCAGCACGAATAGCGATGAT+GGG | 0.611137 | 3_2:+76419886 | None:intergenic |
| TTTCTGGACCAAGCAGAAGT+CGG | 0.612518 | 3_2:+76416559 | None:intergenic |
| GGACAGAGAGAGCTTGAACG+TGG | 0.613574 | 3_2:-76420208 | Msa0425980:five_prime_UTR |
| CTGTTACTTACGTCAAAGGA+GGG | 0.620187 | 3_2:-76417766 | Msa0425980:CDS |
| TACTCTAAGGAGCCAGACGA+CGG | 0.626826 | 3_2:-76417702 | Msa0425980:CDS |
| GCTTTCCACTTCAGGAACAA+GGG | 0.630938 | 3_2:-76420274 | Msa0425980:five_prime_UTR |
| CCATGAAGCCAAGAAGGCGA+TGG | 0.633845 | 3_2:-76416532 | Msa0425980:CDS |
| TCTGTTACTTACGTCAAAGG+AGG | 0.641149 | 3_2:-76417767 | Msa0425980:CDS |
| AACAGCAGGATATGGCGTGA+AGG | 0.641655 | 3_2:+76416623 | None:intergenic |
| CAGGAACAAGGGTCAACGAG+TGG | 0.655213 | 3_2:-76420263 | Msa0425980:five_prime_UTR |
| GATGGCAGAATGCATGCTTG+TGG | 0.663638 | 3_2:-76419503 | Msa0425980:CDS |
| TCATGCTACTATGCTATTAG+GGG | 0.665400 | 3_2:-76419471 | Msa0425980:CDS |
| TTGGTTAGGAACTTGTTGAG+TGG | 0.677704 | 3_2:-76419544 | Msa0425980:intron |
| ATAAGCATCACACTTCACCA+AGG | 0.746407 | 3_2:+76420113 | None:intergenic |
| CAAGTTTGTCAAGTTCACTG+CGG | 0.769058 | 3_2:+76419974 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAATATTGTTTTTCAAATA+AGG | - | chr3_2:76417180-76417199 | Msa0425980:intron | 15.0% |
| !!! | TATTATTTTTTATCTGATGT+TGG | - | chr3_2:76417203-76417222 | Msa0425980:intron | 15.0% |
| !! | TCTTTGGTATTAATATTAAA+GGG | - | chr3_2:76418112-76418131 | Msa0425980:intron | 15.0% |
| !!! | TGAGTTGAACAATAAATTTA+AGG | - | chr3_2:76417056-76417075 | Msa0425980:intron | 20.0% |
| !! | AAATGAATTGTGAAATAGTT+TGG | - | chr3_2:76417609-76417628 | Msa0425980:intron | 20.0% |
| !!! | AACATTAGGTTTATACATTT+TGG | + | chr3_2:76417884-76417903 | None:intergenic | 20.0% |
| !!! | GTTGATTTATTTTATCCTAA+AGG | + | chr3_2:76417919-76417938 | None:intergenic | 20.0% |
| !! | TAATATTAATACCAAAGAGT+AGG | + | chr3_2:76418110-76418129 | None:intergenic | 20.0% |
| !! | CTCTTTGGTATTAATATTAA+AGG | - | chr3_2:76418111-76418130 | Msa0425980:intron | 20.0% |
| !!! | TAAACTTTTATTCTATGTCT+TGG | - | chr3_2:76418560-76418579 | Msa0425980:CDS | 20.0% |
| !! | TATTTCATTTCTATAAGCTT+AGG | - | chr3_2:76418893-76418912 | Msa0425980:intron | 20.0% |
| !! | ATTTCATTTCTATAAGCTTA+GGG | - | chr3_2:76418894-76418913 | Msa0425980:intron | 20.0% |
| !! | TAAATGATATCTAAACTTGT+CGG | + | chr3_2:76419143-76419162 | None:intergenic | 20.0% |
| !!! | TTCCTTTATGTATTTTCTAT+TGG | + | chr3_2:76419273-76419292 | None:intergenic | 20.0% |
| !! | AGTATAAAACGAGAAAATAT+TGG | + | chr3_2:76419491-76419510 | None:intergenic | 20.0% |
| !!! | TCGTTTTATACTATTATTCT+AGG | - | chr3_2:76419499-76419518 | Msa0425980:CDS | 20.0% |
| !! | AAAACCTAGAAAAGATTAAT+GGG | + | chr3_2:76419744-76419763 | None:intergenic | 20.0% |
| !! | TAAAACCTAGAAAAGATTAA+TGG | + | chr3_2:76419745-76419764 | None:intergenic | 20.0% |
| !!! | CAAGATTTATAAGTTTTGTA+TGG | + | chr3_2:76420041-76420060 | None:intergenic | 20.0% |
| !! | TTTGAGCAAATATTTTGTCA+AGG | + | chr3_2:76416294-76416313 | None:intergenic | 25.0% |
| ! | GTAAATCGCAATTTCAAATT+AGG | - | chr3_2:76416374-76416393 | Msa0425980:CDS | 25.0% |
| !!! | GATGGATTCTTATGTTTTTT+CGG | + | chr3_2:76416405-76416424 | None:intergenic | 25.0% |
| !! | TTGAAATCCAGTAATGTTTT+CGG | + | chr3_2:76416462-76416481 | None:intergenic | 25.0% |
| ! | AGAAGAGACAAACAATAATT+TGG | - | chr3_2:76416546-76416565 | Msa0425980:CDS | 25.0% |
| ! | GAAGAGACAAACAATAATTT+GGG | - | chr3_2:76416547-76416566 | Msa0425980:CDS | 25.0% |
| ! | AAACACAATAAGTACATGAA+TGG | + | chr3_2:76416621-76416640 | None:intergenic | 25.0% |
| ! | GTTATGTTTGTATGTATTTC+TGG | - | chr3_2:76417028-76417047 | Msa0425980:intron | 25.0% |
| !!! | AAGAATTGATTCTAAGGTAA+CGG | + | chr3_2:76417118-76417137 | None:intergenic | 25.0% |
| !! | ACAACTAAGAATTGATTCTA+AGG | + | chr3_2:76417124-76417143 | None:intergenic | 25.0% |
| ! | CAAATATTTACAAGGATTTG+AGG | + | chr3_2:76417653-76417672 | None:intergenic | 25.0% |
| !!! | TATAAGCTAATGGATTTTCT+TGG | - | chr3_2:76417726-76417745 | Msa0425980:CDS | 25.0% |
| ! | AGAAATGCAAAAATAGTATG+TGG | - | chr3_2:76418713-76418732 | Msa0425980:intron | 25.0% |
| ! | TTAACTATGCCTAAAAAAGT+TGG | - | chr3_2:76418925-76418944 | Msa0425980:intron | 25.0% |
| !!! | GAAGTTATACCAACTTTTTT+AGG | + | chr3_2:76418937-76418956 | None:intergenic | 25.0% |
| ! | ATCCCATCATATGTAAAATT+TGG | - | chr3_2:76419048-76419067 | Msa0425980:intron | 25.0% |
| !! | CTCCAAATTTTACATATGAT+GGG | + | chr3_2:76419053-76419072 | None:intergenic | 25.0% |
| ! | TGCCAATAGAAAATACATAA+AGG | - | chr3_2:76419268-76419287 | Msa0425980:intron | 25.0% |
| !!! | TCACCTTAATTTCAAGTTAA+GGG | + | chr3_2:76419439-76419458 | None:intergenic | 25.0% |
| !!! | TTCACCTTAATTTCAAGTTA+AGG | + | chr3_2:76419440-76419459 | None:intergenic | 25.0% |
| !!! | AAACTATTAGCTTTTGTTCT+AGG | - | chr3_2:76419458-76419477 | Msa0425980:CDS | 25.0% |
| !! | ATATCCCATTAATCTTTTCT+AGG | - | chr3_2:76419737-76419756 | Msa0425980:intron | 25.0% |
| !!! | AGGTTTTATACTATTGTTCT+AGG | - | chr3_2:76419757-76419776 | Msa0425980:intron | 25.0% |
| ! | TATTGATAGATAATGTTTGC+AGG | - | chr3_2:76420070-76420089 | Msa0425980:CDS | 25.0% |
| !!! | ATATGTTGATTTCAAAGAAG+AGG | - | chr3_2:76420130-76420149 | Msa0425980:CDS | 25.0% |
| !! | TTTTATCAAGAAGTAATTCC+TGG | - | chr3_2:76420284-76420303 | Msa0425980:five_prime_UTR | 25.0% |
| ! | GATACATCAGTAATAACAAA+AGG | + | chr3_2:76420471-76420490 | None:intergenic | 25.0% |
| CCATGACATTTAGACATAAA+AGG | + | chr3_2:76416355-76416374 | None:intergenic | 30.0% | |
| ! | CCTTTTATGTCTAAATGTCA+TGG | - | chr3_2:76416352-76416371 | Msa0425980:CDS | 30.0% |
| ! | TGTTTTCGGTCTAACAATAT+CGG | + | chr3_2:76416448-76416467 | None:intergenic | 30.0% |
| CATTACTGGATTTCAAATTC+AGG | - | chr3_2:76416466-76416485 | Msa0425980:CDS | 30.0% | |
| TTAGCAACTGGATATGTATA+AGG | + | chr3_2:76416833-76416852 | None:intergenic | 30.0% | |
| AGGCTAAAAAACAATTGTAG+AGG | - | chr3_2:76417076-76417095 | Msa0425980:intron | 30.0% | |
| !! | AGAATTGATTCTAAGGTAAC+GGG | + | chr3_2:76417117-76417136 | None:intergenic | 30.0% |
| CCATAAGAATAGTGTATGTT+TGG | + | chr3_2:76417151-76417170 | None:intergenic | 30.0% | |
| CCAAACATACACTATTCTTA+TGG | - | chr3_2:76417148-76417167 | Msa0425980:intron | 30.0% | |
| GAAAAACAATATTCTCCTCA+AGG | + | chr3_2:76417175-76417194 | None:intergenic | 30.0% | |
| GAATACAAGAGCAAAATTGA+TGG | - | chr3_2:76417255-76417274 | Msa0425980:intron | 30.0% | |
| CTCAATCTTAATCACATTGT+AGG | + | chr3_2:76417438-76417457 | None:intergenic | 30.0% | |
| CTACAATGTGATTAAGATTG+AGG | - | chr3_2:76417436-76417455 | Msa0425980:intron | 30.0% | |
| TTAAATATCGGTCACAGTAA+CGG | + | chr3_2:76417523-76417542 | None:intergenic | 30.0% | |
| !!! | ATGCTCAGGGTTTTAAATAT+CGG | + | chr3_2:76417535-76417554 | None:intergenic | 30.0% |
| CACATTGAGTTAGTTCATTA+GGG | + | chr3_2:76417558-76417577 | None:intergenic | 30.0% | |
| AACACTTAGCATGAACAATA+AGG | + | chr3_2:76417584-76417603 | None:intergenic | 30.0% | |
| CTGAGATGCAAATATTTACA+AGG | + | chr3_2:76417661-76417680 | None:intergenic | 30.0% | |
| AGGTTAAGTAGTTATTAGCA+AGG | + | chr3_2:76417684-76417703 | None:intergenic | 30.0% | |
| CTGAATCTGATATAAGCTAA+TGG | - | chr3_2:76417716-76417735 | Msa0425980:CDS | 30.0% | |
| CTTTCAATGAACTTATGATC+CGG | + | chr3_2:76417799-76417818 | None:intergenic | 30.0% | |
| ! | TTGAATTGTCTTTTGCTTAG+TGG | - | chr3_2:76417961-76417980 | Msa0425980:intron | 30.0% |
| ! | AAGTAGATCTTTTCTTCTGT+TGG | - | chr3_2:76418011-76418030 | Msa0425980:intron | 30.0% |
| ! | TCCTTCTTTTATCATTTGTG+AGG | + | chr3_2:76418185-76418204 | None:intergenic | 30.0% |
| !! | ATCTTTGAGGCAAAAATTGA+AGG | - | chr3_2:76418307-76418326 | Msa0425980:intron | 30.0% |
| TATGACAAATCCACAAGTTT+GGG | + | chr3_2:76418535-76418554 | None:intergenic | 30.0% | |
| TTATGACAAATCCACAAGTT+TGG | + | chr3_2:76418536-76418555 | None:intergenic | 30.0% | |
| TCTTATATAGCTAGAAGTCT+AGG | - | chr3_2:76418605-76418624 | Msa0425980:CDS | 30.0% | |
| AAGCATTATTCTAGACATCA+TGG | + | chr3_2:76418670-76418689 | None:intergenic | 30.0% | |
| CATGTATGCTAGAATTTGAT+TGG | - | chr3_2:76418784-76418803 | Msa0425980:intron | 30.0% | |
| ! | CCTCCAAATTTTACATATGA+TGG | + | chr3_2:76419054-76419073 | None:intergenic | 30.0% |
| CCATCATATGTAAAATTTGG+AGG | - | chr3_2:76419051-76419070 | Msa0425980:intron | 30.0% | |
| !! | TAAAATTTGGAGGTACTCTA+AGG | - | chr3_2:76419061-76419080 | Msa0425980:intron | 30.0% |
| ! | CTTTTAATCGTTGTCTGAAA+TGG | + | chr3_2:76419110-76419129 | None:intergenic | 30.0% |
| TTTCAGACAACGATTAAAAG+AGG | - | chr3_2:76419110-76419129 | Msa0425980:intron | 30.0% | |
| CTTGTTGCAATACTCATTTA+TGG | - | chr3_2:76419368-76419387 | Msa0425980:intron | 30.0% | |
| GAGGAAAAGAGAACATATTA+TGG | + | chr3_2:76419417-76419436 | None:intergenic | 30.0% | |
| ATTAGCTGAAAAACAGCTAA+TGG | + | chr3_2:76419617-76419636 | None:intergenic | 30.0% | |
| ATCAACAATTCAAGTACAGT+TGG | + | chr3_2:76419706-76419725 | None:intergenic | 30.0% | |
| ATTAGCTGAAAAACAGCTTA+TGG | + | chr3_2:76419875-76419894 | None:intergenic | 30.0% | |
| CATAAACACTTAACAGATGA+GGG | + | chr3_2:76419991-76420010 | None:intergenic | 30.0% | |
| ACATAAACACTTAACAGATG+AGG | + | chr3_2:76419992-76420011 | None:intergenic | 30.0% | |
| TAATGTTTGCAGGTTATTGA+AGG | - | chr3_2:76420080-76420099 | Msa0425980:CDS | 30.0% | |
| TTTCTCATTTCTGATTCCAA+TGG | + | chr3_2:76420321-76420340 | None:intergenic | 30.0% | |
| CTCATCAAGAAAGAAAAATG+GGG | + | chr3_2:76420369-76420388 | None:intergenic | 30.0% | |
| CCTCATCAAGAAAGAAAAAT+GGG | + | chr3_2:76420370-76420389 | None:intergenic | 30.0% | |
| TCCTCATCAAGAAAGAAAAA+TGG | + | chr3_2:76420371-76420390 | None:intergenic | 30.0% | |
| CAAAATCTCTCATCTACTTG+AGG | - | chr3_2:76416258-76416277 | Msa0425980:three_prime_UTR | 35.0% | |
| TTGACGTTGAGCTAAAAAGA+TGG | + | chr3_2:76416423-76416442 | None:intergenic | 35.0% | |
| TGTTAGACCGAAAACATTAC+TGG | - | chr3_2:76416452-76416471 | Msa0425980:CDS | 35.0% | |
| GAGAAAGAGACAACATTTGA+TGG | - | chr3_2:76416592-76416611 | Msa0425980:CDS | 35.0% | |
| ! | CAACCAATCTTTTTCCTTCT+GGG | + | chr3_2:76416711-76416730 | None:intergenic | 35.0% |
| ACATATCCAGTTGCTAAAAC+TGG | - | chr3_2:76416836-76416855 | Msa0425980:intron | 35.0% | |
| !! | ACAATACCAGTTTTAGCAAC+TGG | + | chr3_2:76416845-76416864 | None:intergenic | 35.0% |
| ACTGGTATTGTTGCTCAAAT+TGG | - | chr3_2:76416854-76416873 | Msa0425980:intron | 35.0% | |
| ! | ATTGTTGCTCAAATTGGTTC+TGG | - | chr3_2:76416860-76416879 | Msa0425980:intron | 35.0% |
| CTCATGCTACTATGCTATTA+GGG | - | chr3_2:76417304-76417323 | Msa0425980:intron | 35.0% | |
| TCATGCTACTATGCTATTAG+GGG | - | chr3_2:76417305-76417324 | Msa0425980:intron | 35.0% | |
| TTAATCACATTGTAGGTCAG+TGG | + | chr3_2:76417431-76417450 | None:intergenic | 35.0% | |
| CCACATTGAGTTAGTTCATT+AGG | + | chr3_2:76417559-76417578 | None:intergenic | 35.0% | |
| CCTAATGAACTAACTCAATG+TGG | - | chr3_2:76417556-76417575 | Msa0425980:intron | 35.0% | |
| TATCAGATTCAGTGTGATTG+TGG | + | chr3_2:76417708-76417727 | None:intergenic | 35.0% | |
| ! | GAACTCTACTTCACAACTTT+TGG | - | chr3_2:76417753-76417772 | Msa0425980:CDS | 35.0% |
| TACAATGACGTGCTAATTAC+CGG | - | chr3_2:76417777-76417796 | Msa0425980:intron | 35.0% | |
| GGAACAAAGAGCTAAACATT+AGG | + | chr3_2:76417898-76417917 | None:intergenic | 35.0% | |
| !! | GTTTAGCTCTTTGTTCCTTT+AGG | - | chr3_2:76417901-76417920 | Msa0425980:intron | 35.0% |
| GCCTCACAAATGATAAAAGA+AGG | - | chr3_2:76418181-76418200 | Msa0425980:intron | 35.0% | |
| TTCACAACAAGAACTATCCA+TGG | - | chr3_2:76418475-76418494 | Msa0425980:CDS | 35.0% | |
| ATTGTTGCAACTAAAAGCCA+TGG | + | chr3_2:76418495-76418514 | None:intergenic | 35.0% | |
| ATGACAAATCCACAAGTTTG+GGG | + | chr3_2:76418534-76418553 | None:intergenic | 35.0% | |
| AAAAATAGTATGTGGCACAG+TGG | - | chr3_2:76418721-76418740 | Msa0425980:intron | 35.0% | |
| !! | ACACTGCTGTTTCTTACAAA+GGG | + | chr3_2:76418853-76418872 | None:intergenic | 35.0% |
| !! | TACACTGCTGTTTCTTACAA+AGG | + | chr3_2:76418854-76418873 | None:intergenic | 35.0% |
| TTCGTCTTGCAACATATCTA+TGG | - | chr3_2:76419211-76419230 | Msa0425980:intron | 35.0% | |
| ACAGCTCATCACTATCATTT+AGG | + | chr3_2:76419318-76419337 | None:intergenic | 35.0% | |
| ! | AAATGATAGTGATGAGCTGT+AGG | - | chr3_2:76419318-76419337 | Msa0425980:intron | 35.0% |
| !! | CCTTAATTTCAAGTTAAGGG+AGG | + | chr3_2:76419436-76419455 | None:intergenic | 35.0% |
| ! | CCTCCCTTAACTTGAAATTA+AGG | - | chr3_2:76419433-76419452 | Msa0425980:CDS | 35.0% |
| ACTATTATTCTAGGCCTGTT+TGG | - | chr3_2:76419508-76419527 | Msa0425980:CDS | 35.0% | |
| CTATTATTCTAGGCCTGTTT+GGG | - | chr3_2:76419509-76419528 | Msa0425980:CDS | 35.0% | |
| ! | GATGTTTTCATAAGCTATCC+TGG | + | chr3_2:76419652-76419671 | None:intergenic | 35.0% |
| AGACTGTTTCAGAAAGCTTA+TGG | - | chr3_2:76419828-76419847 | Msa0425980:intron | 35.0% | |
| AAGTTGTAAATAAGCGAACC+TGG | + | chr3_2:76419910-76419929 | None:intergenic | 35.0% | |
| CAACATATGCATTACATCTG+TGG | + | chr3_2:76420118-76420137 | None:intergenic | 35.0% | |
| CCAATGGAAAACAATATTCC+AGG | + | chr3_2:76420305-76420324 | None:intergenic | 35.0% | |
| ! | CCTGGAATATTGTTTTCCAT+TGG | - | chr3_2:76420302-76420321 | Msa0425980:five_prime_UTR | 35.0% |
| GGAATCAGAAATGAGAAAGT+AGG | - | chr3_2:76420323-76420342 | Msa0425980:five_prime_UTR | 35.0% | |
| !! | CCCATTTTTCTTTCTTGATG+AGG | - | chr3_2:76420367-76420386 | Msa0425980:five_prime_UTR | 35.0% |
| TTGAAGTTCCACACACACTA+AGG | + | chr3_2:76416241-76416260 | None:intergenic | 40.0% | |
| ACACTTCACCAAGGTACAAA+GGG | + | chr3_2:76416657-76416676 | None:intergenic | 40.0% | |
| ATAAGCATCACACTTCACCA+AGG | + | chr3_2:76416666-76416685 | None:intergenic | 40.0% | |
| ! | CCAACCAATCTTTTTCCTTC+TGG | + | chr3_2:76416712-76416731 | None:intergenic | 40.0% |
| CCAGAAGGAAAAAGATTGGT+TGG | - | chr3_2:76416709-76416728 | Msa0425980:intron | 40.0% | |
| GATTCATCAACACCCAGAAT+TGG | - | chr3_2:76416748-76416767 | Msa0425980:intron | 40.0% | |
| GTTCTTGGAAAGCCAATTCT+GGG | + | chr3_2:76416763-76416782 | None:intergenic | 40.0% | |
| TGTTCTTGGAAAGCCAATTC+TGG | + | chr3_2:76416764-76416783 | None:intergenic | 40.0% | |
| CAAGTTTGTCAAGTTCACTG+CGG | + | chr3_2:76416805-76416824 | None:intergenic | 40.0% | |
| ACACTTAAGGAGCTAAAGTG+GGG | + | chr3_2:76416942-76416961 | None:intergenic | 40.0% | |
| CACACTTAAGGAGCTAAAGT+GGG | + | chr3_2:76416943-76416962 | None:intergenic | 40.0% | |
| ACACACTTAAGGAGCTAAAG+TGG | + | chr3_2:76416944-76416963 | None:intergenic | 40.0% | |
| TAGCTCCTTAAGTGTGTGTT+TGG | - | chr3_2:76416947-76416966 | Msa0425980:intron | 40.0% | |
| CACAACCAAACACACACTTA+AGG | + | chr3_2:76416955-76416974 | None:intergenic | 40.0% | |
| CACTATTCTTATGGTCCTTG+AGG | - | chr3_2:76417157-76417176 | Msa0425980:intron | 40.0% | |
| !! | TATCTGATGTTGGTGATGCT+TGG | - | chr3_2:76417213-76417232 | Msa0425980:intron | 40.0% |
| !! | TTGGTTAGGAACTTGTTGAG+TGG | - | chr3_2:76417232-76417251 | Msa0425980:intron | 40.0% |
| !! | TGGTTAGGAACTTGTTGAGT+GGG | - | chr3_2:76417233-76417252 | Msa0425980:intron | 40.0% |
| GCTCATGCTACTATGCTATT+AGG | - | chr3_2:76417303-76417322 | Msa0425980:intron | 40.0% | |
| TCAGCGCAAAGATAAGCTTA+AGG | - | chr3_2:76417344-76417363 | Msa0425980:intron | 40.0% | |
| TAGTTCATTAGGGATGCTCA+GGG | + | chr3_2:76417548-76417567 | None:intergenic | 40.0% | |
| TTAGTTCATTAGGGATGCTC+AGG | + | chr3_2:76417549-76417568 | None:intergenic | 40.0% | |
| AGATTCAGTGTGATTGTGGA+AGG | + | chr3_2:76417704-76417723 | None:intergenic | 40.0% | |
| ! | TTGTCTTTTGCTTAGTGGTG+TGG | - | chr3_2:76417966-76417985 | Msa0425980:intron | 40.0% |
| ! | CTTTTCTTCTGTTGGTGTGT+TGG | - | chr3_2:76418019-76418038 | Msa0425980:intron | 40.0% |
| AAGACTGTCATCCTACTCTT+TGG | - | chr3_2:76418096-76418115 | Msa0425980:intron | 40.0% | |
| ATTGATGCTACGACATCTAC+TGG | - | chr3_2:76418241-76418260 | Msa0425980:intron | 40.0% | |
| GGCTACATCATTGGCAATAT+TGG | - | chr3_2:76418378-76418397 | Msa0425980:CDS | 40.0% | |
| GCACATACTTGACTATGAAG+AGG | + | chr3_2:76418436-76418455 | None:intergenic | 40.0% | |
| TATGTCTTGGCTTCTCTCTT+TGG | - | chr3_2:76418573-76418592 | Msa0425980:CDS | 40.0% | |
| ATGCTTATTGTTACGAGACG+AGG | - | chr3_2:76418684-76418703 | Msa0425980:intron | 40.0% | |
| ACAGCAGTGTAGTTATGTCT+AGG | - | chr3_2:76418863-76418882 | Msa0425980:intron | 40.0% | |
| GACAACTGAGCATCACATAT+TGG | - | chr3_2:76418974-76418993 | Msa0425980:intron | 40.0% | |
| TAAGTAACAGACAGTACCTG+TGG | + | chr3_2:76419000-76419019 | None:intergenic | 40.0% | |
| ! | CTGTCTGTTACTTACGTCAA+AGG | - | chr3_2:76419006-76419025 | Msa0425980:intron | 40.0% |
| ! | TCTGTTACTTACGTCAAAGG+AGG | - | chr3_2:76419009-76419028 | Msa0425980:intron | 40.0% |
| ! | CTGTTACTTACGTCAAAGGA+GGG | - | chr3_2:76419010-76419029 | Msa0425980:intron | 40.0% |
| ! | TGTTACTTACGTCAAAGGAG+GGG | - | chr3_2:76419011-76419030 | Msa0425980:intron | 40.0% |
| GCTATAAGCTAAACCCAAAC+AGG | + | chr3_2:76419525-76419544 | None:intergenic | 40.0% | |
| AGACTGTTTCAGAAAGCTTG+TGG | - | chr3_2:76419570-76419589 | Msa0425980:intron | 40.0% | |
| GCTAATTTCATAACCTCTCC+AGG | - | chr3_2:76419631-76419650 | Msa0425980:intron | 40.0% | |
| TTTCATAAGCTATCCTGGAG+AGG | + | chr3_2:76419647-76419666 | None:intergenic | 40.0% | |
| ! | ACTATTGTTCTAGGCCTGTT+TGG | - | chr3_2:76419766-76419785 | Msa0425980:intron | 40.0% |
| ! | CTATTGTTCTAGGCCTGTTT+GGG | - | chr3_2:76419767-76419786 | Msa0425980:intron | 40.0% |
| GCTAATTTCATAACCTCTCC+AGG | - | chr3_2:76419631-76419650 | Msa0425980:intron | 40.0% | |
| TTTGCAGGTTATTGAAGGAC+AGG | - | chr3_2:76420085-76420104 | Msa0425980:CDS | 40.0% | |
| TCATTGACAACAGCAGGATA+TGG | + | chr3_2:76420164-76420183 | None:intergenic | 40.0% | |
| TCTTTGTCATTGACAACAGC+AGG | + | chr3_2:76420170-76420189 | None:intergenic | 40.0% | |
| ! | TTGGCTTCATGGACATTTTC+TGG | + | chr3_2:76420236-76420255 | None:intergenic | 40.0% |
| AAATGTCCATGAAGCCAAGA+AGG | - | chr3_2:76420238-76420257 | Msa0425980:five_prime_UTR | 40.0% | |
| ! | AAAGAAAAATGGGGAGTGTG+GGG | + | chr3_2:76420360-76420379 | None:intergenic | 40.0% |
| ! | GAAAGAAAAATGGGGAGTGT+GGG | + | chr3_2:76420361-76420380 | None:intergenic | 40.0% |
| AGAAAGAAAAATGGGGAGTG+TGG | + | chr3_2:76420362-76420381 | None:intergenic | 40.0% | |
| GATGAGGAAGCTCTTTCAAT+TGG | - | chr3_2:76420383-76420402 | Msa0425980:five_prime_UTR | 40.0% | |
| GAAGTTGTGCTTTCCACTTC+AGG | - | chr3_2:76416494-76416513 | Msa0425980:CDS | 45.0% | |
| TGCTTTCCACTTCAGGAACA+AGG | - | chr3_2:76416501-76416520 | Msa0425980:CDS | 45.0% | |
| GCTTTCCACTTCAGGAACAA+GGG | - | chr3_2:76416502-76416521 | Msa0425980:CDS | 45.0% | |
| ATGCACTTCCCTTTGTACCT+TGG | - | chr3_2:76416646-76416665 | Msa0425980:CDS | 45.0% | |
| CACACTTCACCAAGGTACAA+AGG | + | chr3_2:76416658-76416677 | None:intergenic | 45.0% | |
| CAGCCCAGAAGGAAAAAGAT+TGG | - | chr3_2:76416705-76416724 | Msa0425980:intron | 45.0% | |
| GTCAAGTTCACTGCGGATAA+GGG | + | chr3_2:76416798-76416817 | None:intergenic | 45.0% | |
| TGTCAAGTTCACTGCGGATA+AGG | + | chr3_2:76416799-76416818 | None:intergenic | 45.0% | |
| CGCAGTGAACTTGACAAACT+TGG | - | chr3_2:76416803-76416822 | Msa0425980:intron | 45.0% | |
| TCAGCACGAATAGCGATGAT+GGG | + | chr3_2:76416893-76416912 | None:intergenic | 45.0% | |
| ATCAGCACGAATAGCGATGA+TGG | + | chr3_2:76416894-76416913 | None:intergenic | 45.0% | |
| ! | CATCGCTATTCGTGCTGATA+TGG | - | chr3_2:76416895-76416914 | Msa0425980:intron | 45.0% |
| AAAGTGGGGTAACCTGCAAA+GGG | + | chr3_2:76416928-76416947 | None:intergenic | 45.0% | |
| TAAAGTGGGGTAACCTGCAA+AGG | + | chr3_2:76416929-76416948 | None:intergenic | 45.0% | |
| !! | GATGTTGGTGATGCTTGGTT+AGG | - | chr3_2:76417218-76417237 | Msa0425980:intron | 45.0% |
| CAGGAAATCGCGTTCAAATG+CGG | + | chr3_2:76417471-76417490 | None:intergenic | 45.0% | |
| CGCGATTTCCTGCAATCTTA+AGG | - | chr3_2:76417479-76417498 | Msa0425980:intron | 45.0% | |
| GTCGTGATCCTTAAGATTGC+AGG | + | chr3_2:76417490-76417509 | None:intergenic | 45.0% | |
| ! | ACTTCTTTTCCAACCTGCTG+AGG | - | chr3_2:76418144-76418163 | Msa0425980:intron | 45.0% |
| !! | GAGCTATAGCATCGATTCCA+GGG | - | chr3_2:76418263-76418282 | Msa0425980:intron | 45.0% |
| ATGCATCCAGCAGCTGTAAA+AGG | + | chr3_2:76418289-76418308 | None:intergenic | 45.0% | |
| ! | GAGGCAAAAATTGAAGGCGT+AGG | - | chr3_2:76418313-76418332 | Msa0425980:intron | 45.0% |
| ! | GCAAAAATTGAAGGCGTAGG+TGG | - | chr3_2:76418316-76418335 | Msa0425980:intron | 45.0% |
| ACTGCAACAGCTTGTCTCAA+GGG | - | chr3_2:76418402-76418421 | Msa0425980:CDS | 45.0% | |
| GAGAAACTTCCCCAAACTTG+TGG | - | chr3_2:76418522-76418541 | Msa0425980:CDS | 45.0% | |
| !! | TTGGCTTCTCTCTTTGGAAC+TGG | - | chr3_2:76418579-76418598 | Msa0425980:CDS | 45.0% |
| GTTACTTACGTCAAAGGAGG+GGG | - | chr3_2:76419012-76419031 | Msa0425980:intron | 45.0% | |
| !! | GCTTTCTGAAACAGTCTCAC+AGG | + | chr3_2:76419567-76419586 | None:intergenic | 45.0% |
| ! | GCTCTAAGCTAAACCCAAAC+AGG | + | chr3_2:76419783-76419802 | None:intergenic | 45.0% |
| GTAAATAAGCGAACCTGGAG+AGG | + | chr3_2:76419905-76419924 | None:intergenic | 45.0% | |
| CATCTACATGTCGAGAGAGT+TGG | - | chr3_2:76420194-76420213 | Msa0425980:five_prime_UTR | 45.0% | |
| TTTCTGGACCAAGCAGAAGT+CGG | + | chr3_2:76420220-76420239 | None:intergenic | 45.0% | |
| GTTGACCCTTGTTCCTGAAG+TGG | + | chr3_2:76416510-76416529 | None:intergenic | 50.0% | |
| GATTCTGAGTTCAGCCCAGA+AGG | - | chr3_2:76416694-76416713 | Msa0425980:intron | 50.0% | |
| GGGCACTTGTGTTGTGTTCT+TGG | + | chr3_2:76416778-76416797 | None:intergenic | 50.0% | |
| TATGGATGCACTCCCTTTGC+AGG | - | chr3_2:76416913-76416932 | Msa0425980:intron | 50.0% | |
| GATGGCAGAATGCATGCTTG+TGG | - | chr3_2:76417273-76417292 | Msa0425980:intron | 50.0% | |
| GAAATCGCGTTCAAATGCGG+CGG | + | chr3_2:76417468-76417487 | None:intergenic | 50.0% | |
| ! | TCTTTTCCAACCTGCTGAGG+AGG | - | chr3_2:76418147-76418166 | Msa0425980:intron | 50.0% |
| ! | CTTTTCCAACCTGCTGAGGA+GGG | - | chr3_2:76418148-76418167 | Msa0425980:intron | 50.0% |
| !! | GGAGCTATAGCATCGATTCC+AGG | - | chr3_2:76418262-76418281 | Msa0425980:intron | 50.0% |
| AGCTGCTGGATGCATCTTTG+AGG | - | chr3_2:76418294-76418313 | Msa0425980:intron | 50.0% | |
| ! | TCCACTGCTGGCTACATCAT+TGG | - | chr3_2:76418369-76418388 | Msa0425980:CDS | 50.0% |
| CACTGCAACAGCTTGTCTCA+AGG | - | chr3_2:76418401-76418420 | Msa0425980:CDS | 50.0% | |
| GAGCATCACATATTGGCCAC+AGG | - | chr3_2:76418981-76419000 | Msa0425980:intron | 50.0% | |
| ! | TACTCTAAGGAGCCAGACGA+CGG | - | chr3_2:76419074-76419093 | Msa0425980:intron | 50.0% |
| AACAGCAGGATATGGCGTGA+AGG | + | chr3_2:76420156-76420175 | None:intergenic | 50.0% | |
| CAGGAACAAGGGTCAACGAG+TGG | - | chr3_2:76416513-76416532 | Msa0425980:CDS | 55.0% | |
| ACAAGGGTCAACGAGTGGCT+TGG | - | chr3_2:76416518-76416537 | Msa0425980:CDS | 55.0% | |
| GGACAGAGAGAGCTTGAACG+TGG | - | chr3_2:76416568-76416587 | Msa0425980:CDS | 55.0% | |
| AGTGGATCTACAGCCTGGTG+GGG | + | chr3_2:76418355-76418374 | None:intergenic | 55.0% | |
| CAGTGGATCTACAGCCTGGT+GGG | + | chr3_2:76418356-76418375 | None:intergenic | 55.0% | |
| GCCAATGATGTAGCCAGCAG+TGG | + | chr3_2:76418373-76418392 | None:intergenic | 55.0% | |
| ! | AGAGTTGGCCGACTTCTGCT+TGG | - | chr3_2:76420209-76420228 | Msa0425980:five_prime_UTR | 55.0% |
| CCATCGCCTTCTTGGCTTCA+TGG | + | chr3_2:76420247-76420266 | None:intergenic | 55.0% | |
| CCATGAAGCCAAGAAGGCGA+TGG | - | chr3_2:76420244-76420263 | Msa0425980:five_prime_UTR | 55.0% | |
| GAAGCCAAGAAGGCGATGGT+AGG | - | chr3_2:76420248-76420267 | Msa0425980:five_prime_UTR | 55.0% | |
| TTCGCCTACCATCGCCTTCT+TGG | + | chr3_2:76420255-76420274 | None:intergenic | 55.0% | |
| GCGTTCAAATGCGGCGGATG+AGG | + | chr3_2:76417462-76417481 | None:intergenic | 60.0% | |
| TAGCTCCCTCCTCAGCAGGT+TGG | + | chr3_2:76418156-76418175 | None:intergenic | 60.0% | |
| CCAGCAGCTGTAAAAGGCCC+TGG | + | chr3_2:76418283-76418302 | None:intergenic | 60.0% | |
| ! | CCAGGGCCTTTTACAGCTGC+TGG | - | chr3_2:76418280-76418299 | Msa0425980:intron | 60.0% |
| TCATGCTGCATTCCCCCACC+AGG | - | chr3_2:76418339-76418358 | Msa0425980:intron | 60.0% | |
| GTGGATCTACAGCCTGGTGG+GGG | + | chr3_2:76418354-76418373 | None:intergenic | 60.0% | |
| GCAGTGGATCTACAGCCTGG+TGG | + | chr3_2:76418357-76418376 | None:intergenic | 60.0% | |
| CCAGCAGTGGATCTACAGCC+TGG | + | chr3_2:76418360-76418379 | None:intergenic | 60.0% | |
| CCAGGCTGTAGATCCACTGC+TGG | - | chr3_2:76418357-76418376 | Msa0425980:CDS | 60.0% | |
| GGTGCATGCTTTCCGTCGTC+TGG | + | chr3_2:76419089-76419108 | None:intergenic | 60.0% | |
| ! | CCTCTAGCTCCCTCCTCAGC+AGG | + | chr3_2:76418160-76418179 | None:intergenic | 65.0% |
| CCTGCTGAGGAGGGAGCTAG+AGG | - | chr3_2:76418157-76418176 | Msa0425980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 76416236 | 76420562 | 76416236 | ID=Msa0425980;Name=Msa0425980 |
| chr3_2 | mRNA | 76416236 | 76420562 | 76416236 | ID=Msa0425980-mRNA-1;Parent=Msa0425980;Name=Msa0425980-mRNA-1;_AED=0.38;_eAED=0.38;_QI=375|1|1|1|1|1|5|102|420 |
| chr3_2 | exon | 76416236 | 76416706 | 76416236 | ID=Msa0425980-mRNA-1:exon:19734;Parent=Msa0425980-mRNA-1 |
| chr3_2 | exon | 76417667 | 76417795 | 76417667 | ID=Msa0425980-mRNA-1:exon:19733;Parent=Msa0425980-mRNA-1 |
| chr3_2 | exon | 76418351 | 76418665 | 76418351 | ID=Msa0425980-mRNA-1:exon:19732;Parent=Msa0425980-mRNA-1 |
| chr3_2 | exon | 76419433 | 76419558 | 76419433 | ID=Msa0425980-mRNA-1:exon:19731;Parent=Msa0425980-mRNA-1 |
| chr3_2 | exon | 76419864 | 76420562 | 76419864 | ID=Msa0425980-mRNA-1:exon:19730;Parent=Msa0425980-mRNA-1 |
| chr3_2 | five_prime_UTR | 76420188 | 76420562 | 76420188 | ID=Msa0425980-mRNA-1:five_prime_utr;Parent=Msa0425980-mRNA-1 |
| chr3_2 | CDS | 76419864 | 76420187 | 76419864 | ID=Msa0425980-mRNA-1:cds;Parent=Msa0425980-mRNA-1 |
| chr3_2 | CDS | 76419433 | 76419558 | 76419433 | ID=Msa0425980-mRNA-1:cds;Parent=Msa0425980-mRNA-1 |
| chr3_2 | CDS | 76418351 | 76418665 | 76418351 | ID=Msa0425980-mRNA-1:cds;Parent=Msa0425980-mRNA-1 |
| chr3_2 | CDS | 76417667 | 76417795 | 76417667 | ID=Msa0425980-mRNA-1:cds;Parent=Msa0425980-mRNA-1 |
| chr3_2 | CDS | 76416338 | 76416706 | 76416338 | ID=Msa0425980-mRNA-1:cds;Parent=Msa0425980-mRNA-1 |
| chr3_2 | three_prime_UTR | 76416236 | 76416337 | 76416236 | ID=Msa0425980-mRNA-1:three_prime_utr;Parent=Msa0425980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
