Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426060 | XP_003602410.1 | 96.429 | 420 | 15 | 0 | 1 | 420 | 1 | 420 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426060 | sp|Q7XUA8|ILL5_ORYSJ | 61.713 | 397 | 150 | 2 | 24 | 419 | 20 | 415 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426060 | Q0GXX5 | 96.429 | 420 | 15 | 0 | 1 | 420 | 1 | 420 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0425980 | Msa0426060 | 0.965996 | 2.469167e-125 | -8.615850e-47 |
| Msa0426060 | Msa0426200 | 0.976192 | 2.331975e-141 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426060 | MtrunA17_Chr3g0128101 | 96.429 | 420 | 15 | 0 | 1 | 420 | 1 | 420 | 0.0 | 840 |
| Msa0426060 | MtrunA17_Chr3g0124881 | 52.334 | 407 | 188 | 2 | 18 | 418 | 69 | 475 | 2.46e-146 | 424 |
| Msa0426060 | MtrunA17_Chr2g0330721 | 53.093 | 388 | 178 | 4 | 30 | 415 | 49 | 434 | 6.03e-145 | 420 |
| Msa0426060 | MtrunA17_Chr8g0364301 | 49.526 | 422 | 202 | 4 | 7 | 420 | 12 | 430 | 1.37e-143 | 416 |
| Msa0426060 | MtrunA17_Chr8g0371561 | 51.571 | 382 | 183 | 1 | 30 | 411 | 49 | 428 | 1.55e-142 | 413 |
| Msa0426060 | MtrunA17_Chr2g0330661 | 51.554 | 386 | 187 | 0 | 30 | 415 | 44 | 429 | 3.57e-141 | 410 |
| Msa0426060 | MtrunA17_Chr2g0328461 | 50.777 | 386 | 190 | 0 | 30 | 415 | 48 | 433 | 7.02e-141 | 410 |
| Msa0426060 | MtrunA17_Chr8g0341471 | 49.644 | 421 | 205 | 4 | 5 | 418 | 11 | 431 | 1.11e-140 | 409 |
| Msa0426060 | MtrunA17_Chr2g0330671 | 46.411 | 418 | 216 | 2 | 6 | 415 | 16 | 433 | 6.36e-136 | 397 |
| Msa0426060 | MtrunA17_Chr2g0328481 | 41.026 | 312 | 139 | 1 | 151 | 417 | 4 | 315 | 5.54e-74 | 234 |
| Msa0426060 | MtrunA17_Chr8g0364461 | 42.071 | 309 | 147 | 7 | 108 | 413 | 96 | 375 | 3.59e-66 | 217 |
| Msa0426060 | MtrunA17_Chr2g0330711 | 60.526 | 114 | 45 | 0 | 38 | 151 | 48 | 161 | 5.43e-48 | 161 |
| Msa0426060 | MtrunA17_Chr2g0328471 | 53.788 | 132 | 60 | 1 | 38 | 169 | 48 | 178 | 4.01e-46 | 157 |
| Msa0426060 | MtrunA17_Chr3g0128141 | 69.767 | 86 | 17 | 3 | 1 | 81 | 1 | 82 | 2.78e-31 | 115 |
| Msa0426060 | MtrunA17_Chr3g0128121 | 83.673 | 49 | 6 | 1 | 123 | 169 | 1 | 49 | 1.44e-19 | 82.0 |
| Msa0426060 | MtrunA17_Chr3g0128111 | 59.036 | 83 | 27 | 2 | 170 | 250 | 1 | 78 | 2.81e-18 | 84.0 |
| Msa0426060 | MtrunA17_Chr1g0158601 | 57.407 | 54 | 23 | 0 | 201 | 254 | 6 | 59 | 1.43e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426060 | AT5G54140.1 | 58.413 | 416 | 170 | 2 | 4 | 418 | 7 | 420 | 3.79e-174 | 494 |
| Msa0426060 | AT3G02875.1 | 50.251 | 398 | 196 | 1 | 23 | 418 | 33 | 430 | 5.84e-145 | 420 |
| Msa0426060 | AT1G51760.1 | 49.519 | 416 | 206 | 2 | 6 | 417 | 10 | 425 | 1.10e-144 | 419 |
| Msa0426060 | AT1G51780.1 | 49.522 | 418 | 207 | 2 | 6 | 419 | 10 | 427 | 3.18e-142 | 413 |
| Msa0426060 | AT5G56660.1 | 52.368 | 380 | 178 | 2 | 38 | 417 | 49 | 425 | 2.26e-137 | 400 |
| Msa0426060 | AT5G56650.1 | 50.263 | 380 | 186 | 2 | 38 | 417 | 48 | 424 | 8.01e-130 | 381 |
| Msa0426060 | AT1G44350.1 | 51.250 | 400 | 188 | 2 | 20 | 417 | 67 | 461 | 6.76e-127 | 375 |
| Msa0426060 | AT3G02875.2 | 53.405 | 279 | 128 | 1 | 23 | 299 | 33 | 311 | 2.89e-104 | 312 |
| Msa0426060 | AT5G56650.2 | 55.133 | 263 | 116 | 1 | 38 | 300 | 48 | 308 | 1.56e-99 | 299 |
| Msa0426060 | AT3G02875.3 | 54.661 | 236 | 105 | 1 | 23 | 256 | 33 | 268 | 2.27e-88 | 271 |
Find 103 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAGACAAACAATAATT+TGG | 0.156803 | 3_2:-76485215 | Msa0426060:five_prime_UTR |
| TGTTCTTGGAAAGCCAATTC+TGG | 0.188078 | 3_2:+76485000 | None:intergenic |
| ATCCCATCATATGTAAAATT+TGG | 0.213215 | 3_2:-76482700 | Msa0426060:CDS |
| TTCGCCTACCATCGCCTTCT+TGG | 0.222489 | 3_2:+76481496 | None:intergenic |
| GGCTACATCATTGGCAATAT+TGG | 0.227340 | 3_2:-76483370 | Msa0426060:CDS |
| GCTCATGCTACTATGCTATT+AGG | 0.227578 | 3_2:-76484459 | Msa0426060:CDS |
| ACTGGTATTGTTGCTCAAAT+TGG | 0.240045 | 3_2:-76484907 | Msa0426060:CDS |
| CCATGACATTTAGACATAAA+AGG | 0.245825 | 3_2:+76485432 | None:intergenic |
| CTCATGCTACTATGCTATTA+GGG | 0.260514 | 3_2:-76484458 | Msa0426060:CDS |
| CATCGCTATTCGTGCTGATA+TGG | 0.271047 | 3_2:-76484866 | Msa0426060:CDS |
| GGGCACTTGTGTTGTGTTCT+TGG | 0.285265 | 3_2:+76484986 | None:intergenic |
| CCATCGCCTTCTTGGCTTCA+TGG | 0.291544 | 3_2:+76481504 | None:intergenic |
| ATGCATCCAGCAGCTGTAAA+AGG | 0.313338 | 3_2:+76483462 | None:intergenic |
| TTAGCAACTGGATATGTATA+AGG | 0.319340 | 3_2:+76484931 | None:intergenic |
| TGTTAGACCGAAAACATTAC+TGG | 0.321264 | 3_2:-76485309 | Msa0426060:five_prime_UTR |
| CATTACTGGATTTCAAATTC+AGG | 0.322344 | 3_2:-76485295 | Msa0426060:five_prime_UTR |
| ATTGTTGCTCAAATTGGTTC+TGG | 0.333604 | 3_2:-76484901 | Msa0426060:CDS |
| GAAGTTGTGCTTTCCACTTC+AGG | 0.335971 | 3_2:-76485267 | Msa0426060:five_prime_UTR |
| TATGGATGCACTCCCCTTGC+AGG | 0.337780 | 3_2:-76484848 | Msa0426060:intron |
| TCATTGACAACAGCAGGATA+TGG | 0.358726 | 3_2:+76481587 | None:intergenic |
| TAAAATTTGGAGGTACTCTA+AGG | 0.372216 | 3_2:-76482687 | Msa0426060:CDS |
| GATGAGGAAGCTCTTTCAAT+TGG | 0.378444 | 3_2:-76481365 | Msa0426060:CDS |
| GAAGAGACAAACAATAATTT+GGG | 0.383469 | 3_2:-76485214 | Msa0426060:five_prime_UTR |
| GATTCATCAACACCCAGAAT+TGG | 0.394773 | 3_2:-76485013 | Msa0426060:CDS |
| GGAGCTATAGCATCGATTCC+AGG | 0.399066 | 3_2:-76483486 | Msa0426060:CDS |
| GGTGCATGCTTTCCGTCGTC+TGG | 0.400724 | 3_2:+76482662 | None:intergenic |
| CCAATGGAAAACAATATTCC+AGG | 0.411904 | 3_2:+76481446 | None:intergenic |
| ACATATCCAGTTGCTAAAAC+TGG | 0.412373 | 3_2:-76484925 | Msa0426060:CDS |
| TGTCAAGTTCACTGCGGATA+AGG | 0.413444 | 3_2:+76484965 | None:intergenic |
| TCCACTGCTGGCTACATCAT+TGG | 0.424877 | 3_2:-76483379 | Msa0426060:CDS |
| GTTCTTGGAAAGCCAATTCT+GGG | 0.436845 | 3_2:+76485001 | None:intergenic |
| CCTCTAGCTCCCTCCTCAGC+AGG | 0.446876 | 3_2:+76483591 | None:intergenic |
| CGCAGTGAACTTGACAAACT+TGG | 0.449993 | 3_2:-76484958 | Msa0426060:CDS |
| ATGCACTTCCCTTTGTACCT+TGG | 0.451159 | 3_2:-76485115 | Msa0426060:CDS |
| ATCAGCACGAATAGCGATGA+TGG | 0.452920 | 3_2:+76484870 | None:intergenic |
| TTTCTCATTTCTGATTCCAA+TGG | 0.462714 | 3_2:+76481430 | None:intergenic |
| GTCAAGTTCACTGCGGATAA+GGG | 0.470836 | 3_2:+76484966 | None:intergenic |
| TTTGCAGGTTATTGAAGGAC+AGG | 0.472506 | 3_2:-76481663 | Msa0426060:intron |
| TTTCAGACAACGATTAAAAG+AGG | 0.472816 | 3_2:-76482638 | Msa0426060:intron |
| GAGAAAGAGACAACATTTGA+TGG | 0.473847 | 3_2:-76485169 | Msa0426060:exon |
| TTGAAGTTCCACACACACTA+AGG | 0.474587 | 3_2:+76485546 | None:intergenic |
| TGCTTTCCACTTCAGGAACA+AGG | 0.475863 | 3_2:-76485260 | Msa0426060:five_prime_UTR |
| TAATGTTTGCAGGTTATTGA+AGG | 0.477164 | 3_2:-76481668 | Msa0426060:intron |
| GTTCCACACACACTAAGGTT+AGG | 0.480393 | 3_2:+76485551 | None:intergenic |
| TCTTTGTCATTGACAACAGC+AGG | 0.485579 | 3_2:+76481581 | None:intergenic |
| ATTGATGCTACGACATCTAC+TGG | 0.492280 | 3_2:-76483507 | Msa0426060:CDS |
| AGAGTTGGCCGACTTCTGCT+TGG | 0.497776 | 3_2:-76481539 | Msa0426060:CDS |
| TCAGCGCAAAGATAAGCTTA+AGG | 0.505619 | 3_2:-76484418 | Msa0426060:intron |
| CAGTGGATCTACAGCCTGGT+GGG | 0.506382 | 3_2:+76483395 | None:intergenic |
| CACTGCAACAGCTTGTCTCA+AGG | 0.507821 | 3_2:-76483347 | Msa0426060:CDS |
| CCAGCAGCTGTAAAAGGCCC+TGG | 0.508450 | 3_2:+76483468 | None:intergenic |
| GATACATCAGTAATAACAAA+AGG | 0.510030 | 3_2:+76481280 | None:intergenic |
| ACAAGGGTCAACGAGTGGCT+TGG | 0.513160 | 3_2:-76485243 | Msa0426060:five_prime_UTR |
| GTTGACCCTTGTTCCTGAAG+TGG | 0.515450 | 3_2:+76485254 | None:intergenic |
| AAACACAATAAGTACATGAA+TGG | 0.518642 | 3_2:+76485143 | None:intergenic |
| CTAAAGTGGGGTAACCTGCA+AGG | 0.518742 | 3_2:+76484834 | None:intergenic |
| TGGTTAGGAACTTGTTGAGT+GGG | 0.518955 | 3_2:-76484529 | Msa0426060:intron |
| CCATCATATGTAAAATTTGG+AGG | 0.522089 | 3_2:-76482697 | Msa0426060:CDS |
| GATTCTGAGTTCAGCCCAGA+AGG | 0.530256 | 3_2:-76485067 | Msa0426060:CDS |
| CATCTACATGTCGAGAGAGT+TGG | 0.530513 | 3_2:-76481554 | Msa0426060:CDS |
| GGAATCAGAAATGAGAAAGT+AGG | 0.531619 | 3_2:-76481425 | Msa0426060:CDS |
| GCCTCACAAATGATAAAAGA+AGG | 0.534222 | 3_2:-76483567 | Msa0426060:CDS |
| GAATACAAGAGCAAAATTGA+TGG | 0.536081 | 3_2:-76484507 | Msa0426060:CDS |
| ACACTTCACCAAGGTACAAA+GGG | 0.537229 | 3_2:+76485107 | None:intergenic |
| AGCTGCTGGATGCATCTTTG+AGG | 0.539162 | 3_2:-76483454 | Msa0426060:CDS |
| ACTGCAACAGCTTGTCTCAA+GGG | 0.552626 | 3_2:-76483346 | Msa0426060:CDS |
| TAAAGTGGGGTAACCTGCAA+GGG | 0.555791 | 3_2:+76484835 | None:intergenic |
| ATATGTTGATTTCAAAGAAG+AGG | 0.556877 | 3_2:-76481618 | Msa0426060:CDS |
| CACACTTCACCAAGGTACAA+AGG | 0.561395 | 3_2:+76485106 | None:intergenic |
| CAAAATCTCTCATCTACTTG+AGG | 0.561815 | 3_2:-76485526 | Msa0426060:five_prime_UTR |
| GCCAATGATGTAGCCAGCAG+TGG | 0.567435 | 3_2:+76483378 | None:intergenic |
| AAATGTCCATGAAGCCAAGA+AGG | 0.567889 | 3_2:-76481510 | Msa0426060:CDS |
| GAGCTATAGCATCGATTCCA+GGG | 0.569617 | 3_2:-76483485 | Msa0426060:CDS |
| TAACCTAACCTTAGTGTGTG+TGG | 0.571216 | 3_2:-76485554 | None:intergenic |
| AGTGGATCTACAGCCTGGTG+GGG | 0.571496 | 3_2:+76483396 | None:intergenic |
| CCAGGCTGTAGATCCACTGC+TGG | 0.573212 | 3_2:-76483391 | Msa0426060:CDS |
| CCAGCAGTGGATCTACAGCC+TGG | 0.576768 | 3_2:+76483391 | None:intergenic |
| TAGCTCCCTCCTCAGCAGGT+TGG | 0.580361 | 3_2:+76483595 | None:intergenic |
| GTTACTTACGTCAAAGGAGG+GGG | 0.581861 | 3_2:-76482736 | Msa0426060:CDS |
| GTGGATCTACAGCCTGGTGG+GGG | 0.591638 | 3_2:+76483397 | None:intergenic |
| CCTGCTGAGGAGGGAGCTAG+AGG | 0.592496 | 3_2:-76483591 | Msa0426060:CDS |
| GCAGTGGATCTACAGCCTGG+TGG | 0.592846 | 3_2:+76483394 | None:intergenic |
| CAACATATGCATTACATCTG+TGG | 0.596314 | 3_2:+76481633 | None:intergenic |
| CTGTCTGTTACTTACGTCAA+AGG | 0.596467 | 3_2:-76482742 | Msa0426060:CDS |
| TGTTACTTACGTCAAAGGAG+GGG | 0.597194 | 3_2:-76482737 | Msa0426060:CDS |
| GAAGCCAAGAAGGCGATGGT+AGG | 0.605651 | 3_2:-76481500 | Msa0426060:CDS |
| GCACATACTTGACTATGAAG+AGG | 0.609774 | 3_2:+76483315 | None:intergenic |
| TCAGCACGAATAGCGATGAT+GGG | 0.611137 | 3_2:+76484871 | None:intergenic |
| TTTCTGGACCAAGCAGAAGT+CGG | 0.612518 | 3_2:+76481531 | None:intergenic |
| GGACAGAGAGAGCTTGAACG+TGG | 0.613574 | 3_2:-76485193 | Msa0426060:five_prime_UTR |
| CTGTTACTTACGTCAAAGGA+GGG | 0.620187 | 3_2:-76482738 | Msa0426060:CDS |
| TACTCTAAGGAGCCAGACGA+CGG | 0.626826 | 3_2:-76482674 | Msa0426060:CDS |
| GCTTTCCACTTCAGGAACAA+GGG | 0.630938 | 3_2:-76485259 | Msa0426060:five_prime_UTR |
| CCATGAAGCCAAGAAGGCGA+TGG | 0.633845 | 3_2:-76481504 | Msa0426060:CDS |
| TCTGTTACTTACGTCAAAGG+AGG | 0.641149 | 3_2:-76482739 | Msa0426060:CDS |
| AACAGCAGGATATGGCGTGA+AGG | 0.641655 | 3_2:+76481595 | None:intergenic |
| CAGGAACAAGGGTCAACGAG+TGG | 0.655213 | 3_2:-76485248 | Msa0426060:five_prime_UTR |
| GATGGCAGAATGCATGCTTG+TGG | 0.663638 | 3_2:-76484489 | Msa0426060:CDS |
| TCATGCTACTATGCTATTAG+GGG | 0.665400 | 3_2:-76484457 | Msa0426060:CDS |
| TTGGTTAGGAACTTGTTGAG+TGG | 0.677704 | 3_2:-76484530 | Msa0426060:intron |
| AAAGTGGGGTAACCTGCAAG+GGG | 0.681943 | 3_2:+76484836 | None:intergenic |
| ATAAGCATCACACTTCACCA+AGG | 0.746407 | 3_2:+76485098 | None:intergenic |
| CAAGTTTGTCAAGTTCACTG+CGG | 0.769058 | 3_2:+76484959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAATATATATATATTA+GGG | + | chr3_2:76481369-76481388 | None:intergenic | 0.0% |
| !! | ATTAAAAATATATATATATT+AGG | + | chr3_2:76481370-76481389 | None:intergenic | 0.0% |
| !!! | TTATCTAAACTTTTTAATAT+GGG | + | chr3_2:76482851-76482870 | None:intergenic | 10.0% |
| !!! | TTTATCTAAACTTTTTAATA+TGG | + | chr3_2:76482852-76482871 | None:intergenic | 10.0% |
| !!! | AGAATATTGTTTTTCAAATA+AGG | - | chr3_2:76482174-76482193 | Msa0426060:intron | 15.0% |
| !!! | TATTATTTTTTATCTGATGT+TGG | - | chr3_2:76482197-76482216 | Msa0426060:intron | 15.0% |
| !! | CTAAGTGTTAAAAAAAAAAA+TGG | - | chr3_2:76482606-76482625 | Msa0426060:intron | 15.0% |
| !! | AATATATATATATTAGGGAG+AGG | + | chr3_2:76481364-76481383 | None:intergenic | 20.0% |
| !!! | TCTTATGTTTTTTCTTCTAT+GGG | + | chr3_2:76481393-76481412 | None:intergenic | 20.0% |
| !!! | TTCTTATGTTTTTTCTTCTA+TGG | + | chr3_2:76481394-76481413 | None:intergenic | 20.0% |
| !!! | TGAGTTGAACAATAAATTTA+AGG | - | chr3_2:76482051-76482070 | Msa0426060:intron | 20.0% |
| !!! | AACATTAGGTTTATACATTT+TGG | + | chr3_2:76482892-76482911 | None:intergenic | 20.0% |
| !!! | GTTGATTTATTTTATCCTAA+AGG | + | chr3_2:76482927-76482946 | None:intergenic | 20.0% |
| !! | TCGTTGGTATTAATATTAAA+GGG | - | chr3_2:76483120-76483139 | Msa0426060:intron | 20.0% |
| !!! | TAAACTTTTATTCTATGTCT+TGG | - | chr3_2:76483568-76483587 | Msa0426060:CDS | 20.0% |
| !! | TATTTCATTTCTATAAGCTT+AGG | - | chr3_2:76483901-76483920 | Msa0426060:intron | 20.0% |
| !! | ATTTCATTTCTATAAGCTTA+GGG | - | chr3_2:76483902-76483921 | Msa0426060:intron | 20.0% |
| !! | TAAATGATATCTAAACTTGT+CGG | + | chr3_2:76484151-76484170 | None:intergenic | 20.0% |
| !!! | TTCCTTTATGTATTTTCTAT+TGG | + | chr3_2:76484281-76484300 | None:intergenic | 20.0% |
| !! | AGTATAAAACGAGAAAATAT+TGG | + | chr3_2:76484499-76484518 | None:intergenic | 20.0% |
| !!! | TCGTTTTATACTATTATTCT+AGG | - | chr3_2:76484507-76484526 | Msa0426060:CDS | 20.0% |
| !! | AAAACCTAGAAAAGATTAAT+GGG | + | chr3_2:76484752-76484771 | None:intergenic | 20.0% |
| !! | TAAAACCTAGAAAAGATTAA+TGG | + | chr3_2:76484753-76484772 | None:intergenic | 20.0% |
| !!! | CAAGATTTATAAGTTTTGTA+TGG | + | chr3_2:76485049-76485068 | None:intergenic | 20.0% |
| !! | TTTGAGCAAATATTTTGTCA+AGG | + | chr3_2:76481266-76481285 | None:intergenic | 25.0% |
| !! | TTGAAATCCAGTAATGTTTT+CGG | + | chr3_2:76481457-76481476 | None:intergenic | 25.0% |
| ! | AGAAGAGACAAACAATAATT+TGG | - | chr3_2:76481541-76481560 | Msa0426060:CDS | 25.0% |
| ! | GAAGAGACAAACAATAATTT+GGG | - | chr3_2:76481542-76481561 | Msa0426060:CDS | 25.0% |
| ! | AAACACAATAAGTACATGAA+TGG | + | chr3_2:76481616-76481635 | None:intergenic | 25.0% |
| ! | GTTATGTTTGTATGTATTTC+TGG | - | chr3_2:76482023-76482042 | Msa0426060:intron | 25.0% |
| !!! | TAGAATTGATTCTAAGGTAA+CGG | + | chr3_2:76482113-76482132 | None:intergenic | 25.0% |
| !! | AACAACTAGAATTGATTCTA+AGG | + | chr3_2:76482119-76482138 | None:intergenic | 25.0% |
| ! | TTCATTTATTAGATTGACCA+CGG | - | chr3_2:76482398-76482417 | Msa0426060:intron | 25.0% |
| !!! | AAATGGATTGTGAAATAGTT+TGG | - | chr3_2:76482623-76482642 | Msa0426060:intron | 25.0% |
| ! | CAATTATTTACAAGGATTTG+AGG | + | chr3_2:76482667-76482686 | None:intergenic | 25.0% |
| ! | TTGAATCTGATATAAGCTAA+TGG | - | chr3_2:76482725-76482744 | Msa0426060:CDS | 25.0% |
| !!! | TATAAGCTAATGGATTTTCT+TGG | - | chr3_2:76482735-76482754 | Msa0426060:CDS | 25.0% |
| ! | ATTTCAATGAACTTATGATC+CGG | + | chr3_2:76482808-76482827 | None:intergenic | 25.0% |
| ! | TAATATTAATACCAACGAGT+AGG | + | chr3_2:76483118-76483137 | None:intergenic | 25.0% |
| ! | CTCGTTGGTATTAATATTAA+AGG | - | chr3_2:76483119-76483138 | Msa0426060:intron | 25.0% |
| ! | AGAAATGCAAAAATAGTATG+TGG | - | chr3_2:76483721-76483740 | Msa0426060:intron | 25.0% |
| ! | TTAACTATGCCTAAAAAAGT+TGG | - | chr3_2:76483933-76483952 | Msa0426060:intron | 25.0% |
| !!! | GAAGTTATACCAACTTTTTT+AGG | + | chr3_2:76483945-76483964 | None:intergenic | 25.0% |
| ! | ATCCCATCATATGTAAAATT+TGG | - | chr3_2:76484056-76484075 | Msa0426060:intron | 25.0% |
| !! | CTCCAAATTTTACATATGAT+GGG | + | chr3_2:76484061-76484080 | None:intergenic | 25.0% |
| ! | TGCCAATAGAAAATACATAA+AGG | - | chr3_2:76484276-76484295 | Msa0426060:intron | 25.0% |
| !!! | TCACCTTAATTTCAAGTTAA+GGG | + | chr3_2:76484447-76484466 | None:intergenic | 25.0% |
| !!! | TTCACCTTAATTTCAAGTTA+AGG | + | chr3_2:76484448-76484467 | None:intergenic | 25.0% |
| !!! | AAACTATTAGCTTTTGTTCT+AGG | - | chr3_2:76484466-76484485 | Msa0426060:CDS | 25.0% |
| !! | ATATCCCATTAATCTTTTCT+AGG | - | chr3_2:76484745-76484764 | Msa0426060:intron | 25.0% |
| !!! | AGGTTTTATACTATTGTTCT+AGG | - | chr3_2:76484765-76484784 | Msa0426060:intron | 25.0% |
| ! | TATTGATAGATAATGTTTGC+AGG | - | chr3_2:76485078-76485097 | Msa0426060:CDS | 25.0% |
| !!! | ATATGTTGATTTCAAAGAAG+AGG | - | chr3_2:76485138-76485157 | Msa0426060:CDS | 25.0% |
| !! | TTTTATCAAGAAGTAATTCC+TGG | - | chr3_2:76485292-76485311 | Msa0426060:five_prime_UTR | 25.0% |
| ! | GATACATCAGTAATAACAAA+AGG | + | chr3_2:76485479-76485498 | None:intergenic | 25.0% |
| CCATGACATTTAGACATAAA+AGG | + | chr3_2:76481327-76481346 | None:intergenic | 30.0% | |
| ! | CCTTTTATGTCTAAATGTCA+TGG | - | chr3_2:76481324-76481343 | Msa0426060:CDS | 30.0% |
| ! | TGTTTTCGGTCTAACAATAT+CGG | + | chr3_2:76481443-76481462 | None:intergenic | 30.0% |
| CATTACTGGATTTCAAATTC+AGG | - | chr3_2:76481461-76481480 | Msa0426060:CDS | 30.0% | |
| TTAGCAACTGGATATGTATA+AGG | + | chr3_2:76481828-76481847 | None:intergenic | 30.0% | |
| AGGCTAAAAAACAATTGTAG+AGG | - | chr3_2:76482071-76482090 | Msa0426060:intron | 30.0% | |
| !! | AGAATTGATTCTAAGGTAAC+GGG | + | chr3_2:76482112-76482131 | None:intergenic | 30.0% |
| CCATAAGAATAGTGTATGTT+TGG | + | chr3_2:76482145-76482164 | None:intergenic | 30.0% | |
| CCAAACATACACTATTCTTA+TGG | - | chr3_2:76482142-76482161 | Msa0426060:intron | 30.0% | |
| GAAAAACAATATTCTCCTCA+AGG | + | chr3_2:76482169-76482188 | None:intergenic | 30.0% | |
| GAATACAAGAGCAAAATTGA+TGG | - | chr3_2:76482249-76482268 | Msa0426060:intron | 30.0% | |
| CTACAACATGATTAAGATTG+AGG | - | chr3_2:76482447-76482466 | Msa0426060:intron | 30.0% | |
| TTAAATATCGGTCACAGTAA+CGG | + | chr3_2:76482534-76482553 | None:intergenic | 30.0% | |
| !!! | ATGCTCAGGGTTTTAAATAT+CGG | + | chr3_2:76482546-76482565 | None:intergenic | 30.0% |
| CACATTGAGTTAGTTCATTA+GGG | + | chr3_2:76482569-76482588 | None:intergenic | 30.0% | |
| AACACTTAGCATGAACAATA+AGG | + | chr3_2:76482595-76482614 | None:intergenic | 30.0% | |
| CTGAGATGCAATTATTTACA+AGG | + | chr3_2:76482675-76482694 | None:intergenic | 30.0% | |
| AGGTTAAGTAGTTATTAGCA+AGG | + | chr3_2:76482698-76482717 | None:intergenic | 30.0% | |
| ATATCAGATTCAATTGTGGA+AGG | + | chr3_2:76482718-76482737 | None:intergenic | 30.0% | |
| GCTTATATCAGATTCAATTG+TGG | + | chr3_2:76482722-76482741 | None:intergenic | 30.0% | |
| ! | TTGAATTGTCTTTTGCTTAG+TGG | - | chr3_2:76482969-76482988 | Msa0426060:intron | 30.0% |
| ! | AAGTAGATGTTTTCTTCTGT+TGG | - | chr3_2:76483019-76483038 | Msa0426060:intron | 30.0% |
| ! | TCCTTCTTTTATCATTTGTG+AGG | + | chr3_2:76483193-76483212 | None:intergenic | 30.0% |
| !! | ATCTTTGAGGCAAAAATTGA+AGG | - | chr3_2:76483315-76483334 | Msa0426060:intron | 30.0% |
| TATGACAAATCCACAAGTTT+GGG | + | chr3_2:76483543-76483562 | None:intergenic | 30.0% | |
| TTATGACAAATCCACAAGTT+TGG | + | chr3_2:76483544-76483563 | None:intergenic | 30.0% | |
| TCTTATATAGCTAGAAGTCT+AGG | - | chr3_2:76483613-76483632 | Msa0426060:CDS | 30.0% | |
| AAGCATTATTCTAGACATCA+TGG | + | chr3_2:76483678-76483697 | None:intergenic | 30.0% | |
| CATGTATGCTAGAATTTGAT+TGG | - | chr3_2:76483792-76483811 | Msa0426060:intron | 30.0% | |
| ! | CCTCCAAATTTTACATATGA+TGG | + | chr3_2:76484062-76484081 | None:intergenic | 30.0% |
| CCATCATATGTAAAATTTGG+AGG | - | chr3_2:76484059-76484078 | Msa0426060:intron | 30.0% | |
| !! | TAAAATTTGGAGGTACTCTA+AGG | - | chr3_2:76484069-76484088 | Msa0426060:intron | 30.0% |
| ! | CTTTTAATCGTTGTCTGAAA+TGG | + | chr3_2:76484118-76484137 | None:intergenic | 30.0% |
| TTTCAGACAACGATTAAAAG+AGG | - | chr3_2:76484118-76484137 | Msa0426060:intron | 30.0% | |
| CTTGTTGCAATACTCATTTA+TGG | - | chr3_2:76484376-76484395 | Msa0426060:intron | 30.0% | |
| GAGGAAAAGAGAACATATTA+TGG | + | chr3_2:76484425-76484444 | None:intergenic | 30.0% | |
| ATTAGCTGAAAAACAGCTAA+TGG | + | chr3_2:76484625-76484644 | None:intergenic | 30.0% | |
| ATCAACAATTCAAGTACAGT+TGG | + | chr3_2:76484714-76484733 | None:intergenic | 30.0% | |
| ATTAGCTGAAAAACAGCTTA+TGG | + | chr3_2:76484883-76484902 | None:intergenic | 30.0% | |
| CATAAACACTTAACAGATGA+GGG | + | chr3_2:76484999-76485018 | None:intergenic | 30.0% | |
| ACATAAACACTTAACAGATG+AGG | + | chr3_2:76485000-76485019 | None:intergenic | 30.0% | |
| TAATGTTTGCAGGTTATTGA+AGG | - | chr3_2:76485088-76485107 | Msa0426060:CDS | 30.0% | |
| TTTCTCATTTCTGATTCCAA+TGG | + | chr3_2:76485329-76485348 | None:intergenic | 30.0% | |
| CTCATCAAGAAAGAAAAATG+GGG | + | chr3_2:76485377-76485396 | None:intergenic | 30.0% | |
| CCTCATCAAGAAAGAAAAAT+GGG | + | chr3_2:76485378-76485397 | None:intergenic | 30.0% | |
| TCCTCATCAAGAAAGAAAAA+TGG | + | chr3_2:76485379-76485398 | None:intergenic | 30.0% | |
| CAAAATCTCTCATCTACTTG+AGG | - | chr3_2:76481230-76481249 | Msa0426060:three_prime_UTR | 35.0% | |
| TTGACGTTGAGCTAAAAAGA+TGG | + | chr3_2:76481418-76481437 | None:intergenic | 35.0% | |
| TGTTAGACCGAAAACATTAC+TGG | - | chr3_2:76481447-76481466 | Msa0426060:CDS | 35.0% | |
| GAGAAAGAGACAACATTTGA+TGG | - | chr3_2:76481587-76481606 | Msa0426060:CDS | 35.0% | |
| ! | CAACCAATCTTTTTCCTTCT+GGG | + | chr3_2:76481706-76481725 | None:intergenic | 35.0% |
| ACATATCCAGTTGCTAAAAC+TGG | - | chr3_2:76481831-76481850 | Msa0426060:intron | 35.0% | |
| !! | ACAATACCAGTTTTAGCAAC+TGG | + | chr3_2:76481840-76481859 | None:intergenic | 35.0% |
| ACTGGTATTGTTGCTCAAAT+TGG | - | chr3_2:76481849-76481868 | Msa0426060:intron | 35.0% | |
| ! | ATTGTTGCTCAAATTGGTTC+TGG | - | chr3_2:76481855-76481874 | Msa0426060:intron | 35.0% |
| CTCATGCTACTATGCTATTA+GGG | - | chr3_2:76482298-76482317 | Msa0426060:intron | 35.0% | |
| TCATGCTACTATGCTATTAG+GGG | - | chr3_2:76482299-76482318 | Msa0426060:intron | 35.0% | |
| CATAAAAAACTGTTATGCCG+TGG | + | chr3_2:76482418-76482437 | None:intergenic | 35.0% | |
| !!! | CACGGCATAACAGTTTTTTA+TGG | - | chr3_2:76482416-76482435 | Msa0426060:intron | 35.0% |
| CCACATTGAGTTAGTTCATT+AGG | + | chr3_2:76482570-76482589 | None:intergenic | 35.0% | |
| CCTAATGAACTAACTCAATG+TGG | - | chr3_2:76482567-76482586 | Msa0426060:intron | 35.0% | |
| ! | GAACTCTACTTCACAACTTT+TGG | - | chr3_2:76482762-76482781 | Msa0426060:intron | 35.0% |
| TACAATGACGTGCTAATTAC+CGG | - | chr3_2:76482786-76482805 | Msa0426060:intron | 35.0% | |
| GGAACAAAGAGCTAAACATT+AGG | + | chr3_2:76482906-76482925 | None:intergenic | 35.0% | |
| !! | GTTTAGCTCTTTGTTCCTTT+AGG | - | chr3_2:76482909-76482928 | Msa0426060:intron | 35.0% |
| GCCTCACAAATGATAAAAGA+AGG | - | chr3_2:76483189-76483208 | Msa0426060:intron | 35.0% | |
| TTCACAACAAGAACTATCCA+TGG | - | chr3_2:76483483-76483502 | Msa0426060:CDS | 35.0% | |
| ATTGTTGCAACTAAAAGCCA+TGG | + | chr3_2:76483503-76483522 | None:intergenic | 35.0% | |
| ATGACAAATCCACAAGTTTG+GGG | + | chr3_2:76483542-76483561 | None:intergenic | 35.0% | |
| AAAAATAGTATGTGGCACAG+TGG | - | chr3_2:76483729-76483748 | Msa0426060:intron | 35.0% | |
| !! | ACACTGCTGTTTCTTACAAA+GGG | + | chr3_2:76483861-76483880 | None:intergenic | 35.0% |
| !! | TACACTGCTGTTTCTTACAA+AGG | + | chr3_2:76483862-76483881 | None:intergenic | 35.0% |
| TTCGTCTTGCAACATATCTA+TGG | - | chr3_2:76484219-76484238 | Msa0426060:intron | 35.0% | |
| ACAGCTCATCACTATCATTT+AGG | + | chr3_2:76484326-76484345 | None:intergenic | 35.0% | |
| ! | AAATGATAGTGATGAGCTGT+AGG | - | chr3_2:76484326-76484345 | Msa0426060:intron | 35.0% |
| !! | CCTTAATTTCAAGTTAAGGG+AGG | + | chr3_2:76484444-76484463 | None:intergenic | 35.0% |
| ! | CCTCCCTTAACTTGAAATTA+AGG | - | chr3_2:76484441-76484460 | Msa0426060:CDS | 35.0% |
| ACTATTATTCTAGGCCTGTT+TGG | - | chr3_2:76484516-76484535 | Msa0426060:CDS | 35.0% | |
| CTATTATTCTAGGCCTGTTT+GGG | - | chr3_2:76484517-76484536 | Msa0426060:CDS | 35.0% | |
| ! | GATGTTTTCATAAGCTATCC+TGG | + | chr3_2:76484660-76484679 | None:intergenic | 35.0% |
| AGACTGTTTCAGAAAGCTTA+TGG | - | chr3_2:76484836-76484855 | Msa0426060:intron | 35.0% | |
| AAGTTGTAAATAAGCGAACC+TGG | + | chr3_2:76484918-76484937 | None:intergenic | 35.0% | |
| CAACATATGCATTACATCTG+TGG | + | chr3_2:76485126-76485145 | None:intergenic | 35.0% | |
| CCAATGGAAAACAATATTCC+AGG | + | chr3_2:76485313-76485332 | None:intergenic | 35.0% | |
| ! | CCTGGAATATTGTTTTCCAT+TGG | - | chr3_2:76485310-76485329 | Msa0426060:five_prime_UTR | 35.0% |
| GGAATCAGAAATGAGAAAGT+AGG | - | chr3_2:76485331-76485350 | Msa0426060:five_prime_UTR | 35.0% | |
| !! | CCCATTTTTCTTTCTTGATG+AGG | - | chr3_2:76485375-76485394 | Msa0426060:five_prime_UTR | 35.0% |
| TTGAAGTTCCACACACACTA+AGG | + | chr3_2:76481213-76481232 | None:intergenic | 40.0% | |
| ACACTTCACCAAGGTACAAA+GGG | + | chr3_2:76481652-76481671 | None:intergenic | 40.0% | |
| ATAAGCATCACACTTCACCA+AGG | + | chr3_2:76481661-76481680 | None:intergenic | 40.0% | |
| ! | CCAACCAATCTTTTTCCTTC+TGG | + | chr3_2:76481707-76481726 | None:intergenic | 40.0% |
| CCAGAAGGAAAAAGATTGGT+TGG | - | chr3_2:76481704-76481723 | Msa0426060:intron | 40.0% | |
| GATTCATCAACACCCAGAAT+TGG | - | chr3_2:76481743-76481762 | Msa0426060:intron | 40.0% | |
| GTTCTTGGAAAGCCAATTCT+GGG | + | chr3_2:76481758-76481777 | None:intergenic | 40.0% | |
| TGTTCTTGGAAAGCCAATTC+TGG | + | chr3_2:76481759-76481778 | None:intergenic | 40.0% | |
| CAAGTTTGTCAAGTTCACTG+CGG | + | chr3_2:76481800-76481819 | None:intergenic | 40.0% | |
| ACACTTAAGGAGCTAAAGTG+GGG | + | chr3_2:76481937-76481956 | None:intergenic | 40.0% | |
| CACACTTAAGGAGCTAAAGT+GGG | + | chr3_2:76481938-76481957 | None:intergenic | 40.0% | |
| ACACACTTAAGGAGCTAAAG+TGG | + | chr3_2:76481939-76481958 | None:intergenic | 40.0% | |
| TAGCTCCTTAAGTGTGTGTT+TGG | - | chr3_2:76481942-76481961 | Msa0426060:intron | 40.0% | |
| CACAACCAAACACACACTTA+AGG | + | chr3_2:76481950-76481969 | None:intergenic | 40.0% | |
| CACTATTCTTATGGTCCTTG+AGG | - | chr3_2:76482151-76482170 | Msa0426060:intron | 40.0% | |
| !! | TATCTGATGTTGGTGATGCT+TGG | - | chr3_2:76482207-76482226 | Msa0426060:intron | 40.0% |
| !! | TTGGTTAGGAACTTGTTGAG+TGG | - | chr3_2:76482226-76482245 | Msa0426060:intron | 40.0% |
| !! | TGGTTAGGAACTTGTTGAGT+GGG | - | chr3_2:76482227-76482246 | Msa0426060:intron | 40.0% |
| GCTCATGCTACTATGCTATT+AGG | - | chr3_2:76482297-76482316 | Msa0426060:intron | 40.0% | |
| TCAGCGCAAAGATAAGCTTA+AGG | - | chr3_2:76482338-76482357 | Msa0426060:intron | 40.0% | |
| TAGTTCATTAGGGATGCTCA+GGG | + | chr3_2:76482559-76482578 | None:intergenic | 40.0% | |
| TTAGTTCATTAGGGATGCTC+AGG | + | chr3_2:76482560-76482579 | None:intergenic | 40.0% | |
| ! | GTTTTCTTCTGTTGGTGTGT+TGG | - | chr3_2:76483027-76483046 | Msa0426060:intron | 40.0% |
| ATTGATGCTACGACATCTAC+TGG | - | chr3_2:76483249-76483268 | Msa0426060:intron | 40.0% | |
| GGCTACATCATTGGCAATAT+TGG | - | chr3_2:76483386-76483405 | Msa0426060:CDS | 40.0% | |
| GCACATACTTGACTATGAAG+AGG | + | chr3_2:76483444-76483463 | None:intergenic | 40.0% | |
| TATGTCTTGGCTTCTCTCTT+TGG | - | chr3_2:76483581-76483600 | Msa0426060:CDS | 40.0% | |
| ATGCTTATTGTTACGAGACG+AGG | - | chr3_2:76483692-76483711 | Msa0426060:intron | 40.0% | |
| ACAGCAGTGTAGTTATGTCT+AGG | - | chr3_2:76483871-76483890 | Msa0426060:intron | 40.0% | |
| GACAACTGAGCATCACATAT+TGG | - | chr3_2:76483982-76484001 | Msa0426060:intron | 40.0% | |
| TAAGTAACAGACAGTACCTG+TGG | + | chr3_2:76484008-76484027 | None:intergenic | 40.0% | |
| ! | CTGTCTGTTACTTACGTCAA+AGG | - | chr3_2:76484014-76484033 | Msa0426060:intron | 40.0% |
| ! | TCTGTTACTTACGTCAAAGG+AGG | - | chr3_2:76484017-76484036 | Msa0426060:intron | 40.0% |
| ! | CTGTTACTTACGTCAAAGGA+GGG | - | chr3_2:76484018-76484037 | Msa0426060:intron | 40.0% |
| ! | TGTTACTTACGTCAAAGGAG+GGG | - | chr3_2:76484019-76484038 | Msa0426060:intron | 40.0% |
| GCTATAAGCTAAACCCAAAC+AGG | + | chr3_2:76484533-76484552 | None:intergenic | 40.0% | |
| AGACTGTTTCAGAAAGCTTG+TGG | - | chr3_2:76484578-76484597 | Msa0426060:intron | 40.0% | |
| GCTAATTTCATAACCTCTCC+AGG | - | chr3_2:76484639-76484658 | Msa0426060:intron | 40.0% | |
| TTTCATAAGCTATCCTGGAG+AGG | + | chr3_2:76484655-76484674 | None:intergenic | 40.0% | |
| ! | ACTATTGTTCTAGGCCTGTT+TGG | - | chr3_2:76484774-76484793 | Msa0426060:intron | 40.0% |
| ! | CTATTGTTCTAGGCCTGTTT+GGG | - | chr3_2:76484775-76484794 | Msa0426060:intron | 40.0% |
| GCTAATTTCATAACCTCTCC+AGG | - | chr3_2:76484639-76484658 | Msa0426060:intron | 40.0% | |
| TTTGCAGGTTATTGAAGGAC+AGG | - | chr3_2:76485093-76485112 | Msa0426060:CDS | 40.0% | |
| TCATTGACAACAGCAGGATA+TGG | + | chr3_2:76485172-76485191 | None:intergenic | 40.0% | |
| TCTTTGTCATTGACAACAGC+AGG | + | chr3_2:76485178-76485197 | None:intergenic | 40.0% | |
| ! | TTGGCTTCATGGACATTTTC+TGG | + | chr3_2:76485244-76485263 | None:intergenic | 40.0% |
| AAATGTCCATGAAGCCAAGA+AGG | - | chr3_2:76485246-76485265 | Msa0426060:five_prime_UTR | 40.0% | |
| ! | AAAGAAAAATGGGGAGTGTG+GGG | + | chr3_2:76485368-76485387 | None:intergenic | 40.0% |
| ! | GAAAGAAAAATGGGGAGTGT+GGG | + | chr3_2:76485369-76485388 | None:intergenic | 40.0% |
| AGAAAGAAAAATGGGGAGTG+TGG | + | chr3_2:76485370-76485389 | None:intergenic | 40.0% | |
| GATGAGGAAGCTCTTTCAAT+TGG | - | chr3_2:76485391-76485410 | Msa0426060:intron | 40.0% | |
| GAAGTTGTGCTTTCCACTTC+AGG | - | chr3_2:76481489-76481508 | Msa0426060:CDS | 45.0% | |
| TGCTTTCCACTTCAGGAACA+AGG | - | chr3_2:76481496-76481515 | Msa0426060:CDS | 45.0% | |
| GCTTTCCACTTCAGGAACAA+GGG | - | chr3_2:76481497-76481516 | Msa0426060:CDS | 45.0% | |
| ATGCACTTCCCTTTGTACCT+TGG | - | chr3_2:76481641-76481660 | Msa0426060:CDS | 45.0% | |
| CACACTTCACCAAGGTACAA+AGG | + | chr3_2:76481653-76481672 | None:intergenic | 45.0% | |
| CAGCCCAGAAGGAAAAAGAT+TGG | - | chr3_2:76481700-76481719 | Msa0426060:intron | 45.0% | |
| GTCAAGTTCACTGCGGATAA+GGG | + | chr3_2:76481793-76481812 | None:intergenic | 45.0% | |
| TGTCAAGTTCACTGCGGATA+AGG | + | chr3_2:76481794-76481813 | None:intergenic | 45.0% | |
| CGCAGTGAACTTGACAAACT+TGG | - | chr3_2:76481798-76481817 | Msa0426060:intron | 45.0% | |
| TCAGCACGAATAGCGATGAT+GGG | + | chr3_2:76481888-76481907 | None:intergenic | 45.0% | |
| ATCAGCACGAATAGCGATGA+TGG | + | chr3_2:76481889-76481908 | None:intergenic | 45.0% | |
| ! | CATCGCTATTCGTGCTGATA+TGG | - | chr3_2:76481890-76481909 | Msa0426060:intron | 45.0% |
| TAAAGTGGGGTAACCTGCAA+GGG | + | chr3_2:76481924-76481943 | None:intergenic | 45.0% | |
| !! | GATGTTGGTGATGCTTGGTT+AGG | - | chr3_2:76482212-76482231 | Msa0426060:intron | 45.0% |
| CAGGAAATCGCGTTCAAATG+CGG | + | chr3_2:76482482-76482501 | None:intergenic | 45.0% | |
| CGCGATTTCCTGCAATCTTA+AGG | - | chr3_2:76482490-76482509 | Msa0426060:intron | 45.0% | |
| GTCGTGATCCTTAAGATTGC+AGG | + | chr3_2:76482501-76482520 | None:intergenic | 45.0% | |
| ! | TTGTCTTTTGCTTAGTGGCG+TGG | - | chr3_2:76482974-76482993 | Msa0426060:intron | 45.0% |
| AAGACTGTCATCCTACTCGT+TGG | - | chr3_2:76483104-76483123 | Msa0426060:intron | 45.0% | |
| ! | ACTTCTTTTCCAACCTGCTG+AGG | - | chr3_2:76483152-76483171 | Msa0426060:intron | 45.0% |
| !! | GAGCTATAGCATCGATTCCA+GGG | - | chr3_2:76483271-76483290 | Msa0426060:intron | 45.0% |
| ATGCATCCAGCAGCTGTAAA+AGG | + | chr3_2:76483297-76483316 | None:intergenic | 45.0% | |
| ! | GAGGCAAAAATTGAAGGCGT+AGG | - | chr3_2:76483321-76483340 | Msa0426060:intron | 45.0% |
| ! | GCAAAAATTGAAGGCGTAGG+TGG | - | chr3_2:76483324-76483343 | Msa0426060:CDS | 45.0% |
| ACTGCAACAGCTTGTCTCAA+GGG | - | chr3_2:76483410-76483429 | Msa0426060:CDS | 45.0% | |
| GAGAAACTTCCCCAAACTTG+TGG | - | chr3_2:76483530-76483549 | Msa0426060:CDS | 45.0% | |
| !! | TTGGCTTCTCTCTTTGGAAC+TGG | - | chr3_2:76483587-76483606 | Msa0426060:CDS | 45.0% |
| GTTACTTACGTCAAAGGAGG+GGG | - | chr3_2:76484020-76484039 | Msa0426060:intron | 45.0% | |
| !! | GCTTTCTGAAACAGTCTCAC+AGG | + | chr3_2:76484575-76484594 | None:intergenic | 45.0% |
| ! | GCTCTAAGCTAAACCCAAAC+AGG | + | chr3_2:76484791-76484810 | None:intergenic | 45.0% |
| GTAAATAAGCGAACCTGGAG+AGG | + | chr3_2:76484913-76484932 | None:intergenic | 45.0% | |
| CATCTACATGTCGAGAGAGT+TGG | - | chr3_2:76485202-76485221 | Msa0426060:five_prime_UTR | 45.0% | |
| TTTCTGGACCAAGCAGAAGT+CGG | + | chr3_2:76485228-76485247 | None:intergenic | 45.0% | |
| GTTGACCCTTGTTCCTGAAG+TGG | + | chr3_2:76481505-76481524 | None:intergenic | 50.0% | |
| GATTCTGAGTTCAGCCCAGA+AGG | - | chr3_2:76481689-76481708 | Msa0426060:intron | 50.0% | |
| GGGCACTTGTGTTGTGTTCT+TGG | + | chr3_2:76481773-76481792 | None:intergenic | 50.0% | |
| AAAGTGGGGTAACCTGCAAG+GGG | + | chr3_2:76481923-76481942 | None:intergenic | 50.0% | |
| CTAAAGTGGGGTAACCTGCA+AGG | + | chr3_2:76481925-76481944 | None:intergenic | 50.0% | |
| GATGGCAGAATGCATGCTTG+TGG | - | chr3_2:76482267-76482286 | Msa0426060:intron | 50.0% | |
| GAAATCGCGTTCAAATGCGG+CGG | + | chr3_2:76482479-76482498 | None:intergenic | 50.0% | |
| ! | TCTTTTCCAACCTGCTGAGG+AGG | - | chr3_2:76483155-76483174 | Msa0426060:intron | 50.0% |
| ! | CTTTTCCAACCTGCTGAGGA+GGG | - | chr3_2:76483156-76483175 | Msa0426060:intron | 50.0% |
| !! | GGAGCTATAGCATCGATTCC+AGG | - | chr3_2:76483270-76483289 | Msa0426060:intron | 50.0% |
| AGCTGCTGGATGCATCTTTG+AGG | - | chr3_2:76483302-76483321 | Msa0426060:intron | 50.0% | |
| ! | TCCACTGCTGGCTACATCAT+TGG | - | chr3_2:76483377-76483396 | Msa0426060:CDS | 50.0% |
| CACTGCAACAGCTTGTCTCA+AGG | - | chr3_2:76483409-76483428 | Msa0426060:CDS | 50.0% | |
| GAGCATCACATATTGGCCAC+AGG | - | chr3_2:76483989-76484008 | Msa0426060:intron | 50.0% | |
| ! | TACTCTAAGGAGCCAGACGA+CGG | - | chr3_2:76484082-76484101 | Msa0426060:intron | 50.0% |
| AACAGCAGGATATGGCGTGA+AGG | + | chr3_2:76485164-76485183 | None:intergenic | 50.0% | |
| CAGGAACAAGGGTCAACGAG+TGG | - | chr3_2:76481508-76481527 | Msa0426060:CDS | 55.0% | |
| ACAAGGGTCAACGAGTGGCT+TGG | - | chr3_2:76481513-76481532 | Msa0426060:CDS | 55.0% | |
| GGACAGAGAGAGCTTGAACG+TGG | - | chr3_2:76481563-76481582 | Msa0426060:CDS | 55.0% | |
| TATGGATGCACTCCCCTTGC+AGG | - | chr3_2:76481908-76481927 | Msa0426060:intron | 55.0% | |
| AGTGGATCTACAGCCTGGTG+GGG | + | chr3_2:76483363-76483382 | None:intergenic | 55.0% | |
| CAGTGGATCTACAGCCTGGT+GGG | + | chr3_2:76483364-76483383 | None:intergenic | 55.0% | |
| GCCAATGATGTAGCCAGCAG+TGG | + | chr3_2:76483381-76483400 | None:intergenic | 55.0% | |
| ! | AGAGTTGGCCGACTTCTGCT+TGG | - | chr3_2:76485217-76485236 | Msa0426060:five_prime_UTR | 55.0% |
| CCATCGCCTTCTTGGCTTCA+TGG | + | chr3_2:76485255-76485274 | None:intergenic | 55.0% | |
| CCATGAAGCCAAGAAGGCGA+TGG | - | chr3_2:76485252-76485271 | Msa0426060:five_prime_UTR | 55.0% | |
| GAAGCCAAGAAGGCGATGGT+AGG | - | chr3_2:76485256-76485275 | Msa0426060:five_prime_UTR | 55.0% | |
| TTCGCCTACCATCGCCTTCT+TGG | + | chr3_2:76485263-76485282 | None:intergenic | 55.0% | |
| GCGTTCAAATGCGGCGGATG+AGG | + | chr3_2:76482473-76482492 | None:intergenic | 60.0% | |
| TAGCTCCCTCCTCAGCAGGT+TGG | + | chr3_2:76483164-76483183 | None:intergenic | 60.0% | |
| CCAGCAGCTGTAAAAGGCCC+TGG | + | chr3_2:76483291-76483310 | None:intergenic | 60.0% | |
| ! | CCAGGGCCTTTTACAGCTGC+TGG | - | chr3_2:76483288-76483307 | Msa0426060:intron | 60.0% |
| TCATGCTGCATTCCCCCACC+AGG | - | chr3_2:76483347-76483366 | Msa0426060:CDS | 60.0% | |
| GTGGATCTACAGCCTGGTGG+GGG | + | chr3_2:76483362-76483381 | None:intergenic | 60.0% | |
| GCAGTGGATCTACAGCCTGG+TGG | + | chr3_2:76483365-76483384 | None:intergenic | 60.0% | |
| CCAGCAGTGGATCTACAGCC+TGG | + | chr3_2:76483368-76483387 | None:intergenic | 60.0% | |
| CCAGGCTGTAGATCCACTGC+TGG | - | chr3_2:76483365-76483384 | Msa0426060:CDS | 60.0% | |
| GGTGCATGCTTTCCGTCGTC+TGG | + | chr3_2:76484097-76484116 | None:intergenic | 60.0% | |
| ! | CCTCTAGCTCCCTCCTCAGC+AGG | + | chr3_2:76483168-76483187 | None:intergenic | 65.0% |
| CCTGCTGAGGAGGGAGCTAG+AGG | - | chr3_2:76483165-76483184 | Msa0426060:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 76481208 | 76485570 | 76481208 | ID=Msa0426060;Name=Msa0426060 |
| chr3_2 | mRNA | 76481208 | 76485570 | 76481208 | ID=Msa0426060-mRNA-1;Parent=Msa0426060;Name=Msa0426060-mRNA-1;_AED=0.25;_eAED=0.25;_QI=373|1|1|1|0.8|0.66|6|102|420 |
| chr3_2 | exon | 76481208 | 76481678 | 76481208 | ID=Msa0426060-mRNA-1:exon:19802;Parent=Msa0426060-mRNA-1 |
| chr3_2 | exon | 76482639 | 76482767 | 76482639 | ID=Msa0426060-mRNA-1:exon:19801;Parent=Msa0426060-mRNA-1 |
| chr3_2 | exon | 76483323 | 76483637 | 76483323 | ID=Msa0426060-mRNA-1:exon:19800;Parent=Msa0426060-mRNA-1 |
| chr3_2 | exon | 76484419 | 76484544 | 76484419 | ID=Msa0426060-mRNA-1:exon:19799;Parent=Msa0426060-mRNA-1 |
| chr3_2 | exon | 76484849 | 76485395 | 76484849 | ID=Msa0426060-mRNA-1:exon:19798;Parent=Msa0426060-mRNA-1 |
| chr3_2 | exon | 76485421 | 76485570 | 76485421 | ID=Msa0426060-mRNA-1:exon:19797;Parent=Msa0426060-mRNA-1 |
| chr3_2 | five_prime_UTR | 76485421 | 76485570 | 76485421 | ID=Msa0426060-mRNA-1:five_prime_utr;Parent=Msa0426060-mRNA-1 |
| chr3_2 | five_prime_UTR | 76485173 | 76485395 | 76485173 | ID=Msa0426060-mRNA-1:five_prime_utr;Parent=Msa0426060-mRNA-1 |
| chr3_2 | CDS | 76484849 | 76485172 | 76484849 | ID=Msa0426060-mRNA-1:cds;Parent=Msa0426060-mRNA-1 |
| chr3_2 | CDS | 76484419 | 76484544 | 76484419 | ID=Msa0426060-mRNA-1:cds;Parent=Msa0426060-mRNA-1 |
| chr3_2 | CDS | 76483323 | 76483637 | 76483323 | ID=Msa0426060-mRNA-1:cds;Parent=Msa0426060-mRNA-1 |
| chr3_2 | CDS | 76482639 | 76482767 | 76482639 | ID=Msa0426060-mRNA-1:cds;Parent=Msa0426060-mRNA-1 |
| chr3_2 | CDS | 76481310 | 76481678 | 76481310 | ID=Msa0426060-mRNA-1:cds;Parent=Msa0426060-mRNA-1 |
| chr3_2 | three_prime_UTR | 76481208 | 76481309 | 76481208 | ID=Msa0426060-mRNA-1:three_prime_utr;Parent=Msa0426060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
