AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427070 MtrunA17_Chr3g0129321 96.098 205 5 2 1 204 3 205 5.64e-143 396
Msa0427070 MtrunA17_Chr8g0383251 52.551 196 72 7 2 192 4 183 2.61e-58 181
Msa0427070 MtrunA17_Chr1g0150801 45.143 175 73 5 9 177 5 162 9.87e-38 128
Msa0427070 MtrunA17_Chr2g0294231 59.740 77 31 0 103 179 189 265 1.94e-29 112
Msa0427070 MtrunA17_Chr4g0051881 46.667 105 43 1 103 194 164 268 5.33e-29 110
Msa0427070 MtrunA17_Chr4g0068541 62.162 74 28 0 104 177 195 268 4.31e-28 109
Msa0427070 MtrunA17_Chr5g0443131 57.333 75 32 0 103 177 143 217 7.32e-28 107
Msa0427070 MtrunA17_Chr8g0335811 53.191 94 38 2 90 178 122 214 2.59e-27 103
Msa0427070 MtrunA17_Chr1g0194481 50.000 94 44 1 86 179 130 220 6.13e-27 104
Msa0427070 MtrunA17_Chr7g0224801 57.353 68 29 0 106 173 82 149 1.11e-26 100
Msa0427070 MtrunA17_Chr7g0248721 51.579 95 42 3 83 177 108 198 1.37e-26 101
Msa0427070 MtrunA17_Chr8g0386241 55.714 70 31 0 104 173 90 159 2.36e-25 97.1
Msa0427070 MtrunA17_Chr5g0418781 54.795 73 33 0 103 175 110 182 2.64e-25 99.4
Msa0427070 MtrunA17_Chr7g0270191 42.991 107 57 1 78 184 110 212 2.68e-25 99.8
Msa0427070 MtrunA17_Chr7g0218081 52.000 75 36 0 103 177 396 470 2.71e-25 102
Msa0427070 MtrunA17_Chr7g0218081 56.667 60 25 1 117 176 228 286 3.39e-15 73.2
Msa0427070 MtrunA17_Chr7g0249311 56.000 75 33 0 103 177 378 452 5.41e-25 101
Msa0427070 MtrunA17_Chr7g0249311 52.381 63 29 1 117 179 179 240 3.84e-14 70.5
Msa0427070 MtrunA17_Chr3g0129361 56.579 76 32 1 103 178 130 204 5.73e-25 97.1
Msa0427070 MtrunA17_Chr7g0249301 53.947 76 35 0 102 177 277 352 6.22e-25 100
Msa0427070 MtrunA17_Chr7g0249301 50.000 64 31 1 116 179 61 123 3.59e-13 67.4
Msa0427070 MtrunA17_Chr5g0418191 52.000 75 36 0 103 177 306 380 7.47e-25 100
Msa0427070 MtrunA17_Chr5g0418191 51.667 60 28 1 117 176 151 209 2.42e-13 67.8
Msa0427070 MtrunA17_Chr3g0079691 50.000 88 44 0 103 190 481 568 2.17e-24 100
Msa0427070 MtrunA17_Chr3g0079691 53.333 60 27 1 117 176 280 338 2.49e-14 70.9
Msa0427070 MtrunA17_Chr5g0445311 53.333 75 35 0 103 177 350 424 2.36e-24 99.8
Msa0427070 MtrunA17_Chr5g0445311 48.333 60 30 1 117 176 200 258 4.54e-12 64.3
Msa0427070 MtrunA17_Chr4g0004911 54.667 75 34 0 103 177 322 396 3.00e-24 99.4
Msa0427070 MtrunA17_Chr4g0004911 49.254 67 34 0 110 176 177 243 1.77e-15 74.3
Msa0427070 MtrunA17_Chr7g0243891 54.667 75 34 0 103 177 360 434 3.65e-24 99.4
Msa0427070 MtrunA17_Chr7g0243891 51.667 60 28 1 117 176 216 274 1.25e-13 68.9
Msa0427070 MtrunA17_Chr4g0042831 52.000 75 36 0 103 177 264 338 5.29e-24 97.8
Msa0427070 MtrunA17_Chr4g0042831 34.615 156 75 4 48 203 98 226 2.01e-15 73.6
Msa0427070 MtrunA17_Chr8g0383351 57.143 77 31 2 103 178 145 220 7.71e-24 94.7
Msa0427070 MtrunA17_Chr3g0101131 54.054 74 34 0 103 176 401 474 8.71e-24 98.2
Msa0427070 MtrunA17_Chr3g0101131 48.333 60 30 1 117 176 243 301 6.68e-12 63.9
Msa0427070 MtrunA17_Chr3g0106491 53.333 75 35 0 103 177 351 425 2.53e-23 96.7
Msa0427070 MtrunA17_Chr3g0106491 44.000 75 37 2 107 177 184 257 2.50e-13 67.8
Msa0427070 MtrunA17_Chr5g0432161 53.333 75 35 0 103 177 407 481 1.28e-22 94.7
Msa0427070 MtrunA17_Chr5g0432161 51.667 60 28 1 117 176 244 302 1.12e-12 66.2
Msa0427070 MtrunA17_Chr6g0485431 36.296 135 76 4 50 176 82 214 1.66e-22 93.2
Msa0427070 MtrunA17_Chr7g0263531 45.263 95 46 1 88 176 326 420 3.09e-22 93.2
Msa0427070 MtrunA17_Chr7g0263531 54.237 59 26 1 118 176 190 247 1.37e-13 68.6
Msa0427070 MtrunA17_Chr7g0270831 36.220 127 65 3 66 176 150 276 5.11e-21 89.7
Msa0427070 MtrunA17_Chr5g0447701 52.055 73 35 0 104 176 239 311 9.97e-21 88.6
Msa0427070 MtrunA17_Chr5g0447701 44.444 63 34 1 114 176 89 150 8.80e-11 60.5
Msa0427070 MtrunA17_Chr7g0238921 46.914 81 37 1 117 197 124 198 1.37e-20 87.4
Msa0427070 MtrunA17_Chr3g0099641 50.000 74 36 1 104 176 238 311 6.87e-20 86.7
Msa0427070 MtrunA17_Chr2g0302391 51.351 74 35 1 104 176 198 271 8.65e-20 86.3
Msa0427070 MtrunA17_Chr4g0075201 48.649 74 37 1 104 176 254 327 1.17e-19 86.3
Msa0427070 MtrunA17_Chr2g0288871 48.649 74 37 1 104 176 292 365 1.65e-19 85.9
Msa0427070 MtrunA17_Chr1g0189391 49.333 75 37 1 100 173 80 154 2.89e-19 84.0
Msa0427070 MtrunA17_Chr4g0074001 44.000 75 42 0 103 177 345 419 3.55e-19 84.7
Msa0427070 MtrunA17_Chr1g0188941 44.595 74 41 0 103 176 37 110 8.62e-19 78.2
Msa0427070 MtrunA17_Chr2g0322391 47.297 74 38 1 104 176 336 409 2.08e-18 82.8
Msa0427070 MtrunA17_Chr4g0051181 48.000 75 38 1 104 177 230 304 2.18e-18 82.4
Msa0427070 MtrunA17_Chr2g0333851 37.815 119 56 4 104 204 154 272 3.67e-18 80.9
Msa0427070 MtrunA17_Chr4g0060271 44.706 85 46 1 93 176 231 315 3.93e-18 82.0
Msa0427070 MtrunA17_Chr4g0025051 49.351 77 38 1 104 179 322 398 4.99e-18 81.6
Msa0427070 MtrunA17_Chr5g0447711 28.977 176 105 4 3 176 132 289 1.73e-17 79.0
Msa0427070 MtrunA17_Chr4g0053281 43.023 86 45 2 89 173 241 323 2.17e-17 79.0
Msa0427070 MtrunA17_Chr3g0136961 52.542 59 27 1 116 173 137 195 5.94e-17 77.4
Msa0427070 MtrunA17_Chr2g0293481 34.711 121 75 2 57 176 210 327 9.44e-17 77.8
Msa0427070 MtrunA17_Chr7g0216891 46.479 71 37 1 104 173 206 276 1.03e-16 77.8
Msa0427070 MtrunA17_Chr1g0147881 45.455 88 42 4 87 173 237 319 1.09e-16 77.0
Msa0427070 MtrunA17_Chr8g0379461 47.143 70 36 1 118 186 77 146 2.68e-16 74.7
Msa0427070 MtrunA17_Chr4g0071521 43.750 80 44 1 95 173 223 302 4.39e-16 75.1
Msa0427070 MtrunA17_Chr7g0270051 51.667 60 28 1 118 176 54 113 4.86e-16 74.3
Msa0427070 MtrunA17_Chr5g0401821 47.887 71 36 1 104 173 186 256 5.12e-16 74.3
Msa0427070 MtrunA17_Chr4g0001361 49.206 63 31 1 115 176 160 222 1.32e-15 73.9
Msa0427070 MtrunA17_Chr2g0319961 40.659 91 51 2 89 176 50 140 1.47e-15 72.8
Msa0427070 MtrunA17_Chr4g0025061 45.333 75 40 1 104 177 347 421 2.26e-15 73.9
Msa0427070 MtrunA17_Chr8g0348311 45.455 66 35 1 114 178 152 217 3.68e-15 72.8
Msa0427070 MtrunA17_Chr1g0202461 47.619 63 32 1 115 176 259 321 5.45e-15 72.4
Msa0427070 MtrunA17_Chr8g0387501 50.000 60 29 1 118 176 130 189 1.02e-14 70.9
Msa0427070 MtrunA17_Chr7g0248691 47.619 63 32 1 115 176 152 214 1.32e-14 70.9
Msa0427070 MtrunA17_Chr1g0184691 41.250 80 46 1 95 173 271 350 2.18e-14 70.5
Msa0427070 MtrunA17_Chr1g0150281 47.368 57 29 1 118 173 141 197 3.30e-14 69.7
Msa0427070 MtrunA17_Chr2g0284321 48.333 60 30 1 118 176 36 95 1.11e-13 67.0
Msa0427070 MtrunA17_Chr7g0228941 32.632 95 63 1 94 187 29 123 2.15e-13 64.3
Msa0427070 MtrunA17_Chr1g0150271 38.095 84 47 2 115 193 99 182 5.94e-13 65.9
Msa0427070 MtrunA17_Chr2g0289181 43.750 64 35 1 114 176 11 74 7.73e-13 65.1
Msa0427070 MtrunA17_Chr4g0024391 40.000 75 44 1 104 177 216 290 6.57e-12 63.5
Msa0427070 MtrunA17_Chr3g0139021 40.984 61 35 1 114 173 311 371 7.60e-12 63.5
Msa0427070 MtrunA17_Chr5g0432071 47.619 63 32 1 117 179 104 165 2.21e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427070 AT5G64810.1 61.386 101 39 0 96 196 89 189 4.12e-40 135
Msa0427070 AT5G26170.1 75.000 72 18 0 104 175 100 171 7.07e-37 127
Msa0427070 AT4G18170.1 51.579 95 44 1 86 178 139 233 1.19e-29 112
Msa0427070 AT2G46130.1 58.667 75 29 1 103 177 16 88 4.57e-28 102
Msa0427070 AT3G01970.1 60.000 70 28 0 104 173 52 121 6.66e-28 103
Msa0427070 AT5G41570.1 50.000 92 44 1 86 177 67 156 8.11e-28 103
Msa0427070 AT5G49520.1 59.459 74 30 0 104 177 208 281 1.12e-27 108
Msa0427070 AT1G29860.1 58.904 73 30 0 104 176 123 195 3.46e-27 104
Msa0427070 AT5G46350.1 55.263 76 34 0 103 178 169 244 4.56e-27 105
Msa0427070 AT1G13960.2 55.405 74 33 0 103 176 242 315 4.25e-26 103
Msa0427070 AT1G13960.2 54.688 64 28 1 116 179 75 137 1.38e-16 77.4
Msa0427070 AT2G47260.1 56.579 76 33 0 104 179 161 236 4.66e-26 102
Msa0427070 AT3G62340.1 54.217 83 38 0 95 177 96 178 4.68e-26 101
Msa0427070 AT2G44745.1 54.545 88 34 2 91 173 115 201 5.52e-26 100
Msa0427070 AT2G21900.1 44.444 99 47 2 86 181 80 173 8.02e-26 99.4
Msa0427070 AT5G13080.1 57.143 70 30 0 104 173 54 123 8.28e-26 97.8
Msa0427070 AT1G13960.1 43.810 105 58 1 72 176 365 468 9.38e-26 103
Msa0427070 AT1G13960.1 55.556 63 27 1 117 179 229 290 1.37e-16 77.8
Msa0427070 AT1G69310.4 54.795 73 33 0 103 175 133 205 3.12e-25 99.8
Msa0427070 AT1G69310.2 54.795 73 33 0 103 175 133 205 3.12e-25 99.8
Msa0427070 AT1G69310.1 54.795 73 33 0 103 175 133 205 3.12e-25 99.8
Msa0427070 AT2G30250.1 48.454 97 45 1 85 176 291 387 4.20e-25 101
Msa0427070 AT1G64000.1 51.220 82 38 1 104 185 101 180 6.49e-25 96.7
Msa0427070 AT2G03340.1 53.333 75 35 0 103 177 401 475 8.53e-25 101
Msa0427070 AT2G03340.1 42.105 95 50 2 86 176 215 308 2.13e-15 74.3
Msa0427070 AT2G04880.2 41.818 110 61 1 76 182 239 348 3.65e-24 99.4
Msa0427070 AT2G04880.1 41.818 110 61 1 76 182 263 372 3.84e-24 99.4
Msa0427070 AT5G56270.1 50.000 88 43 1 91 177 460 547 6.74e-24 99.0
Msa0427070 AT5G56270.1 55.000 60 26 1 117 176 273 331 1.29e-14 72.0
Msa0427070 AT2G46130.2 56.000 75 27 2 103 177 16 84 9.94e-24 91.3
Msa0427070 AT3G01080.1 42.857 91 52 0 86 176 275 365 1.05e-23 97.8
Msa0427070 AT3G01080.1 51.613 62 29 1 117 178 167 227 6.48e-14 69.7
Msa0427070 AT3G01080.2 42.857 91 52 0 86 176 313 403 1.29e-23 97.8
Msa0427070 AT3G01080.2 51.613 62 29 1 117 178 205 265 7.24e-14 69.7
Msa0427070 AT4G39410.1 53.947 76 34 1 103 178 209 283 1.47e-23 95.5
Msa0427070 AT4G26640.5 52.000 75 36 0 103 177 191 265 1.86e-23 96.7
Msa0427070 AT4G26640.5 39.535 86 51 1 115 200 33 117 4.30e-13 67.4
Msa0427070 AT4G26640.6 52.000 75 36 0 103 177 191 265 1.86e-23 96.7
Msa0427070 AT4G26640.6 39.535 86 51 1 115 200 33 117 4.30e-13 67.4
Msa0427070 AT4G26640.4 52.000 75 36 0 103 177 191 265 1.86e-23 96.7
Msa0427070 AT4G26640.4 39.535 86 51 1 115 200 33 117 4.30e-13 67.4
Msa0427070 AT4G26640.3 52.000 75 36 0 103 177 191 265 1.86e-23 96.7
Msa0427070 AT4G26640.3 39.535 86 51 1 115 200 33 117 4.30e-13 67.4
Msa0427070 AT5G07100.2 54.054 74 34 0 103 176 127 200 2.01e-23 93.6
Msa0427070 AT5G07100.2 46.667 60 32 0 117 176 24 83 1.59e-11 61.6
Msa0427070 AT5G07100.4 54.054 74 34 0 103 176 127 200 2.01e-23 93.6
Msa0427070 AT5G07100.4 46.667 60 32 0 117 176 24 83 1.59e-11 61.6
Msa0427070 AT5G07100.5 54.054 74 34 0 103 176 127 200 2.01e-23 93.6
Msa0427070 AT5G07100.5 46.667 60 32 0 117 176 24 83 1.59e-11 61.6
Msa0427070 AT5G07100.3 54.054 74 34 0 103 176 127 200 2.01e-23 93.6
Msa0427070 AT5G07100.3 46.667 60 32 0 117 176 24 83 1.59e-11 61.6
Msa0427070 AT4G26640.7 52.000 75 36 0 103 177 327 401 2.36e-23 97.1
Msa0427070 AT4G26640.7 39.535 86 51 1 115 200 169 253 5.09e-13 67.4
Msa0427070 AT4G26640.2 52.000 75 36 0 103 177 367 441 2.82e-23 97.1
Msa0427070 AT4G26640.2 39.535 86 51 1 115 200 209 293 5.07e-13 67.4
Msa0427070 AT2G38470.1 53.333 75 35 0 103 177 348 422 2.85e-23 97.1
Msa0427070 AT2G38470.1 45.833 72 37 2 105 176 173 242 6.29e-12 64.3
Msa0427070 AT4G26640.1 52.000 75 36 0 103 177 295 369 2.86e-23 96.7
Msa0427070 AT4G26640.1 39.535 86 51 1 115 200 137 221 5.21e-13 67.4
Msa0427070 AT5G07100.1 54.054 74 34 0 103 176 220 293 3.11e-23 94.7
Msa0427070 AT5G07100.1 35.714 112 60 3 77 176 65 176 6.68e-12 63.5
Msa0427070 AT4G26440.1 53.333 75 35 0 103 177 358 432 6.13e-22 93.2
Msa0427070 AT4G26440.1 53.333 60 27 1 117 176 178 236 2.05e-13 68.6
Msa0427070 AT1G69310.3 52.055 73 31 1 103 175 133 201 8.65e-21 87.8
Msa0427070 AT4G04450.2 48.649 74 37 1 104 176 185 258 2.86e-19 85.1
Msa0427070 AT1G68150.1 48.052 77 39 1 104 179 222 298 3.48e-19 84.7
Msa0427070 AT4G22070.4 50.000 74 36 1 104 176 284 357 6.33e-19 84.7
Msa0427070 AT4G22070.3 50.000 74 36 1 104 176 284 357 6.33e-19 84.7
Msa0427070 AT4G22070.2 50.000 74 36 1 104 176 284 357 6.33e-19 84.7
Msa0427070 AT4G22070.1 50.000 74 36 1 104 176 284 357 6.33e-19 84.7
Msa0427070 AT1G62300.1 50.000 74 36 1 104 176 299 372 8.40e-19 84.3
Msa0427070 AT4G04450.1 48.649 74 37 1 104 176 279 352 8.77e-19 84.3
Msa0427070 AT4G30935.1 43.210 81 44 1 115 193 329 409 1.23e-18 83.6
Msa0427070 AT1G55600.1 46.575 73 39 0 104 176 294 366 5.18e-18 82.0
Msa0427070 AT5G43290.1 41.176 102 52 3 94 193 90 185 7.67e-18 79.7
Msa0427070 AT4G01720.1 43.750 96 49 2 86 176 204 299 1.26e-17 80.9
Msa0427070 AT5G15130.2 45.455 77 41 1 104 179 172 248 1.51e-17 80.5
Msa0427070 AT5G15130.1 45.455 77 41 1 104 179 214 290 1.93e-17 80.1
Msa0427070 AT2G34830.2 37.037 108 63 4 71 176 180 284 2.08e-17 80.1
Msa0427070 AT2G34830.1 37.037 108 63 4 71 176 171 275 2.16e-17 79.7
Msa0427070 AT2G25000.2 45.833 72 38 1 116 186 102 173 2.86e-17 77.4
Msa0427070 AT2G25000.4 45.833 72 38 1 116 186 102 173 2.86e-17 77.4
Msa0427070 AT1G18860.1 47.297 74 38 1 104 176 226 299 3.65e-17 79.3
Msa0427070 AT2G25000.3 45.833 72 38 1 116 186 124 195 4.47e-17 77.4
Msa0427070 AT2G25000.1 45.833 72 38 1 116 186 145 216 6.07e-17 77.4
Msa0427070 AT4G31800.2 50.000 62 30 1 116 176 110 171 7.91e-17 76.6
Msa0427070 AT1G80840.1 36.538 104 59 3 76 176 107 206 9.46e-17 77.0
Msa0427070 AT4G31800.1 50.000 62 30 1 116 176 175 236 1.56e-16 76.6
Msa0427070 AT4G24240.1 47.887 71 36 1 104 173 268 338 2.56e-16 76.6
Msa0427070 AT2G23320.1 56.140 57 24 1 118 173 241 297 3.51e-16 75.9
Msa0427070 AT1G29280.1 50.794 63 30 1 118 179 75 137 3.67e-16 75.1
Msa0427070 AT2G37260.3 36.893 103 55 2 71 173 233 325 9.91e-16 74.7
Msa0427070 AT2G37260.3 52.542 59 27 1 118 176 86 143 4.11e-12 64.3
Msa0427070 AT1G30650.1 33.913 115 70 4 64 176 167 277 1.01e-15 75.1
Msa0427070 AT2G37260.2 36.893 103 55 2 71 173 231 323 1.04e-15 74.7
Msa0427070 AT2G37260.2 52.542 59 27 1 118 176 84 141 4.49e-12 64.3
Msa0427070 AT2G30590.1 43.373 83 46 1 92 173 288 370 1.24e-15 74.7
Msa0427070 AT2G37260.1 36.893 103 55 2 71 173 313 405 1.28e-15 74.7
Msa0427070 AT2G37260.1 52.542 59 27 1 118 176 166 223 3.11e-12 65.1
Msa0427070 AT2G24570.1 40.659 91 52 2 95 183 221 311 1.29e-15 74.3
Msa0427070 AT3G58710.2 39.785 93 55 1 88 179 41 133 1.30e-15 73.6
Msa0427070 AT4G01250.1 48.387 62 31 1 118 178 129 190 3.31e-15 72.8
Msa0427070 AT5G28650.1 52.459 61 28 1 114 173 259 319 4.21e-15 72.8
Msa0427070 AT3G58710.1 39.130 92 55 1 89 179 43 134 5.76e-15 72.0
Msa0427070 AT4G31550.2 41.250 80 46 1 95 173 223 302 6.88e-15 72.0
Msa0427070 AT4G31550.1 41.250 80 46 1 95 173 224 303 7.00e-15 72.0
Msa0427070 AT3G04670.1 50.820 61 29 1 114 173 259 319 2.24e-14 70.9
Msa0427070 AT5G52830.1 46.269 67 35 1 111 176 159 225 3.15e-14 70.5
Msa0427070 AT3G01080.3 51.613 62 29 1 117 178 205 265 5.40e-14 69.7
Msa0427070 AT4G23550.1 46.032 63 33 1 115 176 138 200 6.92e-14 69.3
Msa0427070 AT5G45050.4 50.000 60 29 1 118 176 1042 1101 3.65e-13 68.2
Msa0427070 AT5G45050.1 50.000 60 29 1 118 176 1181 1240 3.84e-13 68.2
Msa0427070 AT5G45050.2 50.000 60 29 1 118 176 1153 1212 4.21e-13 67.8
Msa0427070 AT1G69810.2 40.698 86 49 2 93 176 121 206 6.91e-13 66.6
Msa0427070 AT1G69810.1 45.455 66 34 2 116 179 202 267 1.00e-12 66.2
Msa0427070 AT5G24110.1 29.565 115 62 2 76 171 56 170 4.78e-12 63.9
Msa0427070 AT2G40740.1 26.437 174 113 5 25 186 78 248 1.13e-11 62.8
Msa0427070 AT2G40740.3 26.437 174 113 5 25 186 87 257 1.46e-11 62.8
Msa0427070 AT1G66560.1 44.828 58 29 1 117 171 103 160 4.58e-11 60.8
Msa0427070 AT4G12020.3 45.902 61 32 1 116 176 467 526 7.75e-11 61.2
Msa0427070 AT4G12020.4 45.902 61 32 1 116 176 467 526 7.83e-11 61.2
Msa0427070 AT4G12020.2 45.902 61 32 1 116 176 467 526 7.83e-11 61.2
Msa0427070 AT4G12020.10 45.902 61 32 1 116 176 467 526 7.97e-11 61.2
Msa0427070 AT4G12020.7 45.902 61 32 1 116 176 467 526 8.33e-11 61.2
Msa0427070 AT4G12020.6 45.902 61 32 1 116 176 467 526 8.40e-11 61.2
Msa0427070 AT4G12020.8 45.902 61 32 1 116 176 467 526 8.40e-11 61.2
Msa0427070 AT4G12020.5 45.902 61 32 1 116 176 400 459 8.58e-11 61.2
Msa0427070 AT4G12020.1 45.902 61 32 1 116 176 467 526 8.66e-11 61.2
Msa0427070 AT4G12020.9 45.902 61 32 1 116 176 467 526 8.66e-11 61.2

Find 72 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGATAAGGGTTAGAATT+AGG 0.170308 3_2:+77747099 None:intergenic
ATTGCGAGGGCCATGTATTT+TGG 0.189109 3_2:-77747126 None:intergenic
CATTAATTTATCTGATTATC+TGG 0.206659 3_2:-77747040 Msa0427070:CDS
ATGATTAACTTAGCATTAAT+TGG 0.209206 3_2:+77745364 None:intergenic
GAGATCGCAGCTTGAGATTA+TGG 0.274833 3_2:-77746688 Msa0427070:CDS
TAACATTTCCATTGAATAAC+AGG 0.321667 3_2:+77745247 None:intergenic
ACTGGTTAAGGATATGAAAA+AGG 0.325451 3_2:-77745208 Msa0427070:three_prime_UTR
TGTGATAAGGGTTAGAATTA+GGG 0.327958 3_2:+77747100 None:intergenic
ATACTGCACCCCAGTGTCTT+TGG 0.341378 3_2:-77745435 Msa0427070:CDS
GATATATTATTATTGTGATA+AGG 0.354376 3_2:+77747087 None:intergenic
CATCATGTTATTGTTGTTGT+TGG 0.361835 3_2:+77746882 None:intergenic
CTCGTTCTAAACGTCACTCT+TGG 0.361959 3_2:+77746708 None:intergenic
GGATTCAAATGGAGGAAGTA+TGG 0.376820 3_2:-77746660 Msa0427070:CDS
TGGGGTGCAGTATGAATTGC+AGG 0.381764 3_2:+77745445 None:intergenic
GCTATCTTCCTGTTATTCAA+TGG 0.383929 3_2:-77745255 Msa0427070:three_prime_UTR
ATATATTATTATTGTGATAA+GGG 0.384981 3_2:+77747088 None:intergenic
ATCGAGTTGGTAAGTTGTAT+TGG 0.419679 3_2:-77745277 Msa0427070:three_prime_UTR
TTTATCTGATTATCTGGTGC+TGG 0.421050 3_2:-77747034 Msa0427070:CDS
GTTATTGTTGTTGTTGGTAG+AGG 0.421215 3_2:+77746888 None:intergenic
TATTCAATGGAAATGTTAAC+CGG 0.431042 3_2:-77745242 Msa0427070:three_prime_UTR
GATATTAATGTCATCAATCA+AGG 0.432364 3_2:-77746934 Msa0427070:CDS
CAGCTTGAGATTATGGATGA+TGG 0.458517 3_2:-77746681 Msa0427070:CDS
AGAAAAGGGTGGAAAGGGAT+AGG 0.462080 3_2:-77745523 Msa0427070:CDS
AAGGATGTGGTGTGAAGAAA+AGG 0.469530 3_2:-77745538 Msa0427070:CDS
TCGTTCTAAACGTCACTCTT+GGG 0.470165 3_2:+77746709 None:intergenic
GAAAAGGGTGGAAAGGGATA+GGG 0.470665 3_2:-77745522 Msa0427070:CDS
GAAATGTTAACCGGTGCCCC+CGG 0.470923 3_2:-77745233 Msa0427070:three_prime_UTR
ATTGATGACATTAATATCAA+TGG 0.474010 3_2:+77746939 None:intergenic
GTGCTGCTGTGGCCATTCAT+TGG 0.482833 3_2:+77745406 None:intergenic
ACGTAAAAGCGGGGAGATGA+AGG 0.488109 3_2:-77746751 Msa0427070:CDS
TCATATCCTTAACCAGTGCC+CGG 0.492097 3_2:+77745214 None:intergenic
TTAATGCTAAGTTAATCATA+TGG 0.493411 3_2:-77745360 Msa0427070:exon
TTGGAAGAAGAGGTTGCAGA+AGG 0.494174 3_2:+77745383 None:intergenic
CTTTGGTGTATTCCAATGAA+TGG 0.497333 3_2:-77745418 Msa0427070:CDS
TGTGAAGAAAAGGGTGGAAA+GGG 0.502030 3_2:-77745528 Msa0427070:CDS
CATATCCTTAACCAGTGCCC+GGG 0.504802 3_2:+77745215 None:intergenic
AGGAACTACTACAAGTGTTC+AGG 0.517573 3_2:-77745563 Msa0427070:CDS
AAGAGTAATTACCTTGGGTA+TGG 0.521127 3_2:+77746615 None:intergenic
TTATGGATGATGGATTCAAA+TGG 0.530112 3_2:-77746671 Msa0427070:CDS
TTAGCATTAATTGGAAGAAG+AGG 0.534274 3_2:+77745373 None:intergenic
TATGTGCTAACAAGCTATGA+AGG 0.537065 3_2:-77745488 Msa0427070:CDS
GACATTAATATCAATGGTGG+TGG 0.540399 3_2:+77746945 None:intergenic
TTGACAGGAAACGTAAAAGC+GGG 0.543502 3_2:-77746761 Msa0427070:intron
ATTAGGGTTTCCAAAATACA+TGG 0.543667 3_2:+77747116 None:intergenic
TTGGAATACACCAAAGACAC+TGG 0.546851 3_2:+77745425 None:intergenic
TACTACAAGTGTTCAGGTGA+AGG 0.550615 3_2:-77745557 Msa0427070:CDS
AAATCAGACGAGGAAGGAGG+AGG 0.561547 3_2:+77747063 None:intergenic
GTGTGAAGAAAAGGGTGGAA+AGG 0.565384 3_2:-77745529 Msa0427070:CDS
GAATGTTGGTCACAAAGTAC+AGG 0.570695 3_2:-77746997 Msa0427070:CDS
GTTGCAGAAGGGTGCTGCTG+TGG 0.575437 3_2:+77745395 None:intergenic
CTAGGAAGGTCTGATCGAGT+TGG 0.594851 3_2:-77745290 Msa0427070:three_prime_UTR
TGGATGATGGATTCAAATGG+AGG 0.596809 3_2:-77746668 Msa0427070:CDS
TGGAATACACCAAAGACACT+GGG 0.603339 3_2:+77745426 None:intergenic
ATATCCTTAACCAGTGCCCG+GGG 0.604284 3_2:+77745216 None:intergenic
TTAATATCAATGGTGGTGGA+AGG 0.605778 3_2:+77746949 None:intergenic
ATGATGAACATCAAGAATGT+TGG 0.619679 3_2:-77747011 Msa0427070:CDS
AAGTGTTCAGGTGAAGGATG+TGG 0.620118 3_2:-77745551 Msa0427070:CDS
GGGGTGCAGTATGAATTGCA+GGG 0.623339 3_2:+77745446 None:intergenic
AACTGAATCATCAGACAACA+AGG 0.625525 3_2:-77746974 Msa0427070:CDS
AGGATGTGGTGTGAAGAAAA+GGG 0.633271 3_2:-77745537 Msa0427070:CDS
TGGAAGAAGAGGTTGCAGAA+GGG 0.634753 3_2:+77745384 None:intergenic
ATGAAATCAGACGAGGAAGG+AGG 0.639707 3_2:+77747060 None:intergenic
TCAAGAATAGTCCATACCCA+AGG 0.659061 3_2:-77746626 Msa0427070:intron
GGGTGCAGTATGAATTGCAG+GGG 0.665109 3_2:+77745447 None:intergenic
ATGTGGTGTGAAGAAAAGGG+TGG 0.669156 3_2:-77745534 Msa0427070:CDS
GATGACATTAATATCAATGG+TGG 0.679350 3_2:+77746942 None:intergenic
TTAATGAAATCAGACGAGGA+AGG 0.681005 3_2:+77747057 None:intergenic
TAAATTAATGAAATCAGACG+AGG 0.714233 3_2:+77747053 None:intergenic
TTTGACAGGAAACGTAAAAG+CGG 0.714347 3_2:-77746762 Msa0427070:intron
TGACAGGAAACGTAAAAGCG+GGG 0.715176 3_2:-77746760 Msa0427070:intron
TATCCTTAACCAGTGCCCGG+GGG 0.760933 3_2:+77745217 None:intergenic
GGAATACACCAAAGACACTG+GGG 0.775844 3_2:+77745427 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTATTATTGTGATAA+GGG + chr3_2:77745237-77745256 None:intergenic 10.0%
!!! ATAATAATGTATGTATATTT+TGG - chr3_2:77745528-77745547 Msa0427070:CDS 10.0%
!! AGTAAATTTGTATAAAAAAA+TGG + chr3_2:77745996-77746015 None:intergenic 10.0%
!! ATATATTATTATTGTGATAA+GGG + chr3_2:77745237-77745256 None:intergenic 10.0%
!!! ATAATAATGTATGTATATTT+TGG - chr3_2:77745528-77745547 Msa0427070:CDS 10.0%
!! AGTAAATTTGTATAAAAAAA+TGG + chr3_2:77745996-77746015 None:intergenic 10.0%
!! GATATATTATTATTGTGATA+AGG + chr3_2:77745238-77745257 None:intergenic 15.0%
!!! CAAAATAACTTTTCTATTTA+TGG + chr3_2:77745953-77745972 None:intergenic 15.0%
!! GATCATATATATAAATATTG+TGG - chr3_2:77746119-77746138 Msa0427070:intron 15.0%
!! TCATAATTATAAACTGTATA+CGG - chr3_2:77746188-77746207 Msa0427070:intron 15.0%
!! TAATTAGCAAACAAATTAAA+TGG - chr3_2:77746286-77746305 Msa0427070:intron 15.0%
!!! CTTTTTCTTTAAATTATTCT+AGG - chr3_2:77746660-77746679 Msa0427070:CDS 15.0%
!! GATATATTATTATTGTGATA+AGG + chr3_2:77745238-77745257 None:intergenic 15.0%
!!! CAAAATAACTTTTCTATTTA+TGG + chr3_2:77745953-77745972 None:intergenic 15.0%
!! GATCATATATATAAATATTG+TGG - chr3_2:77746119-77746138 Msa0427070:intron 15.0%
!! TCATAATTATAAACTGTATA+CGG - chr3_2:77746188-77746207 Msa0427070:intron 15.0%
!! TAATTAGCAAACAAATTAAA+TGG - chr3_2:77746286-77746305 Msa0427070:intron 15.0%
!!! CTTTTTCTTTAAATTATTCT+AGG - chr3_2:77746660-77746679 Msa0427070:CDS 15.0%
!! CATTAATTTATCTGATTATC+TGG - chr3_2:77745282-77745301 Msa0427070:three_prime_UTR 20.0%
!!! ATTGATGACATTAATATCAA+TGG + chr3_2:77745386-77745405 None:intergenic 20.0%
!! AAAAATTAACATCACAAAAG+TGG + chr3_2:77745493-77745512 None:intergenic 20.0%
!!! TATGTATATTTTGGATTCTT+TGG - chr3_2:77745537-77745556 Msa0427070:CDS 20.0%
!! AACATTATCCTTAACTTAAT+TGG - chr3_2:77746055-77746074 Msa0427070:intron 20.0%
!! CATATATATAAATATTGTGG+CGG - chr3_2:77746122-77746141 Msa0427070:intron 20.0%
!! TACATATTGCATATATGATT+GGG + chr3_2:77746235-77746254 None:intergenic 20.0%
!! TTACATATTGCATATATGAT+TGG + chr3_2:77746236-77746255 None:intergenic 20.0%
!!! TAATTACACACAAAATTTTC+TGG + chr3_2:77746692-77746711 None:intergenic 20.0%
!! ATGATTAACTTAGCATTAAT+TGG + chr3_2:77746961-77746980 None:intergenic 20.0%
!! TTAATGCTAAGTTAATCATA+TGG - chr3_2:77746962-77746981 Msa0427070:CDS 20.0%
!! CATTAATTTATCTGATTATC+TGG - chr3_2:77745282-77745301 Msa0427070:three_prime_UTR 20.0%
!!! ATTGATGACATTAATATCAA+TGG + chr3_2:77745386-77745405 None:intergenic 20.0%
!! AAAAATTAACATCACAAAAG+TGG + chr3_2:77745493-77745512 None:intergenic 20.0%
!!! TATGTATATTTTGGATTCTT+TGG - chr3_2:77745537-77745556 Msa0427070:CDS 20.0%
!! AACATTATCCTTAACTTAAT+TGG - chr3_2:77746055-77746074 Msa0427070:intron 20.0%
!! CATATATATAAATATTGTGG+CGG - chr3_2:77746122-77746141 Msa0427070:intron 20.0%
!! TACATATTGCATATATGATT+GGG + chr3_2:77746235-77746254 None:intergenic 20.0%
!! TTACATATTGCATATATGAT+TGG + chr3_2:77746236-77746255 None:intergenic 20.0%
!!! TAATTACACACAAAATTTTC+TGG + chr3_2:77746692-77746711 None:intergenic 20.0%
!! ATGATTAACTTAGCATTAAT+TGG + chr3_2:77746961-77746980 None:intergenic 20.0%
!! TTAATGCTAAGTTAATCATA+TGG - chr3_2:77746962-77746981 Msa0427070:CDS 20.0%
! TAAATTAATGAAATCAGACG+AGG + chr3_2:77745272-77745291 None:intergenic 25.0%
! GATATTAATGTCATCAATCA+AGG - chr3_2:77745388-77745407 Msa0427070:CDS 25.0%
! TCTTTAATTCATTACCTTCT+TGG - chr3_2:77745742-77745761 Msa0427070:intron 25.0%
! TATCCTTAACTTAATTGGAT+AGG - chr3_2:77746060-77746079 Msa0427070:intron 25.0%
! TTTCCTATCCAATTAAGTTA+AGG + chr3_2:77746066-77746085 None:intergenic 25.0%
! AACTTAATTGGATAGGAAAT+AGG - chr3_2:77746067-77746086 Msa0427070:intron 25.0%
! TAACATTTCCATTGAATAAC+AGG + chr3_2:77747078-77747097 None:intergenic 25.0%
! TATTCAATGGAAATGTTAAC+CGG - chr3_2:77747080-77747099 Msa0427070:CDS 25.0%
! TAAATTAATGAAATCAGACG+AGG + chr3_2:77745272-77745291 None:intergenic 25.0%
! GATATTAATGTCATCAATCA+AGG - chr3_2:77745388-77745407 Msa0427070:CDS 25.0%
! TCTTTAATTCATTACCTTCT+TGG - chr3_2:77745742-77745761 Msa0427070:intron 25.0%
! TATCCTTAACTTAATTGGAT+AGG - chr3_2:77746060-77746079 Msa0427070:intron 25.0%
! TTTCCTATCCAATTAAGTTA+AGG + chr3_2:77746066-77746085 None:intergenic 25.0%
! AACTTAATTGGATAGGAAAT+AGG - chr3_2:77746067-77746086 Msa0427070:intron 25.0%
! TAACATTTCCATTGAATAAC+AGG + chr3_2:77747078-77747097 None:intergenic 25.0%
! TATTCAATGGAAATGTTAAC+CGG - chr3_2:77747080-77747099 Msa0427070:CDS 25.0%
TGTGATAAGGGTTAGAATTA+GGG + chr3_2:77745225-77745244 None:intergenic 30.0%
TTGTGATAAGGGTTAGAATT+AGG + chr3_2:77745226-77745245 None:intergenic 30.0%
ATGATGAACATCAAGAATGT+TGG - chr3_2:77745311-77745330 Msa0427070:three_prime_UTR 30.0%
GATGACATTAATATCAATGG+TGG + chr3_2:77745383-77745402 None:intergenic 30.0%
! CATCATGTTATTGTTGTTGT+TGG + chr3_2:77745443-77745462 None:intergenic 30.0%
!! TTATGGATGATGGATTCAAA+TGG - chr3_2:77745651-77745670 Msa0427070:intron 30.0%
TGACTAAGAGTAATTACCTT+GGG + chr3_2:77745715-77745734 None:intergenic 30.0%
TTGACTAAGAGTAATTACCT+TGG + chr3_2:77745716-77745735 None:intergenic 30.0%
CTTGAGTTAAAAGTTGTGTA+CGG + chr3_2:77745888-77745907 None:intergenic 30.0%
!! GTACACAACTTTTAACTCAA+GGG - chr3_2:77745887-77745906 Msa0427070:intron 30.0%
ATTGTTTAACCAATGCTCTT+AGG - chr3_2:77746023-77746042 Msa0427070:intron 30.0%
TAAACTGTATACGGTTTAAG+TGG - chr3_2:77746197-77746216 Msa0427070:intron 30.0%
!! TGCAAAAGTGCCATTATTTA+CGG + chr3_2:77746518-77746537 None:intergenic 30.0%
TTAGCATTAATTGGAAGAAG+AGG + chr3_2:77746952-77746971 None:intergenic 30.0%
!!! TAGCTGCTGCTTTTAATAAA+AGG - chr3_2:77747009-77747028 Msa0427070:CDS 30.0%
! CTTTTAATAAAAGGCTAGGA+AGG - chr3_2:77747018-77747037 Msa0427070:CDS 30.0%
ACTGGTTAAGGATATGAAAA+AGG - chr3_2:77747114-77747133 Msa0427070:CDS 30.0%
TGTGATAAGGGTTAGAATTA+GGG + chr3_2:77745225-77745244 None:intergenic 30.0%
TTGTGATAAGGGTTAGAATT+AGG + chr3_2:77745226-77745245 None:intergenic 30.0%
ATGATGAACATCAAGAATGT+TGG - chr3_2:77745311-77745330 Msa0427070:three_prime_UTR 30.0%
GATGACATTAATATCAATGG+TGG + chr3_2:77745383-77745402 None:intergenic 30.0%
! CATCATGTTATTGTTGTTGT+TGG + chr3_2:77745443-77745462 None:intergenic 30.0%
!! TTATGGATGATGGATTCAAA+TGG - chr3_2:77745651-77745670 Msa0427070:intron 30.0%
TGACTAAGAGTAATTACCTT+GGG + chr3_2:77745715-77745734 None:intergenic 30.0%
TTGACTAAGAGTAATTACCT+TGG + chr3_2:77745716-77745735 None:intergenic 30.0%
CTTGAGTTAAAAGTTGTGTA+CGG + chr3_2:77745888-77745907 None:intergenic 30.0%
!! GTACACAACTTTTAACTCAA+GGG - chr3_2:77745887-77745906 Msa0427070:intron 30.0%
ATTGTTTAACCAATGCTCTT+AGG - chr3_2:77746023-77746042 Msa0427070:intron 30.0%
TAAACTGTATACGGTTTAAG+TGG - chr3_2:77746197-77746216 Msa0427070:intron 30.0%
!! TGCAAAAGTGCCATTATTTA+CGG + chr3_2:77746518-77746537 None:intergenic 30.0%
TTAGCATTAATTGGAAGAAG+AGG + chr3_2:77746952-77746971 None:intergenic 30.0%
!!! TAGCTGCTGCTTTTAATAAA+AGG - chr3_2:77747009-77747028 Msa0427070:CDS 30.0%
! CTTTTAATAAAAGGCTAGGA+AGG - chr3_2:77747018-77747037 Msa0427070:CDS 30.0%
TTAATGAAATCAGACGAGGA+AGG + chr3_2:77745268-77745287 None:intergenic 35.0%
TTTATCTGATTATCTGGTGC+TGG - chr3_2:77745288-77745307 Msa0427070:three_prime_UTR 35.0%
AACTGAATCATCAGACAACA+AGG - chr3_2:77745348-77745367 Msa0427070:three_prime_UTR 35.0%
!! TTAATATCAATGGTGGTGGA+AGG + chr3_2:77745376-77745395 None:intergenic 35.0%
GACATTAATATCAATGGTGG+TGG + chr3_2:77745380-77745399 None:intergenic 35.0%
! GTTATTGTTGTTGTTGGTAG+AGG + chr3_2:77745437-77745456 None:intergenic 35.0%
!! TTTGGATTCTTTGGTTTGAC+AGG - chr3_2:77745546-77745565 Msa0427070:CDS 35.0%
TTTGACAGGAAACGTAAAAG+CGG - chr3_2:77745560-77745579 Msa0427070:CDS 35.0%
AAGAGTAATTACCTTGGGTA+TGG + chr3_2:77745710-77745729 None:intergenic 35.0%
TGTACGGCATGATATTGATA+GGG + chr3_2:77745872-77745891 None:intergenic 35.0%
!! CGTACACAACTTTTAACTCA+AGG - chr3_2:77745886-77745905 Msa0427070:intron 35.0%
TTGGATAGGAAATAGGATAG+TGG - chr3_2:77746074-77746093 Msa0427070:intron 35.0%
!! TGATATATGCTAGTTGATGG+AGG - chr3_2:77746146-77746165 Msa0427070:intron 35.0%
!! GATATATGCTAGTTGATGGA+GGG - chr3_2:77746147-77746166 Msa0427070:intron 35.0%
!! ATATATGCTAGTTGATGGAG+GGG - chr3_2:77746148-77746167 Msa0427070:intron 35.0%
!! AAAAGTGCCATTATTTACGG+GGG + chr3_2:77746515-77746534 None:intergenic 35.0%
!! CAAAAGTGCCATTATTTACG+GGG + chr3_2:77746516-77746535 None:intergenic 35.0%
!! GCAAAAGTGCCATTATTTAC+GGG + chr3_2:77746517-77746536 None:intergenic 35.0%
AGATGTGTACATATACAAGC+AGG - chr3_2:77746739-77746758 Msa0427070:CDS 35.0%
TATGTGCTAACAAGCTATGA+AGG - chr3_2:77746834-77746853 Msa0427070:intron 35.0%
! CTTTGGTGTATTCCAATGAA+TGG - chr3_2:77746904-77746923 Msa0427070:CDS 35.0%
!!! GCTGCTTTTAATAAAAGGCT+AGG - chr3_2:77747014-77747033 Msa0427070:CDS 35.0%
!! ATCGAGTTGGTAAGTTGTAT+TGG - chr3_2:77747045-77747064 Msa0427070:CDS 35.0%
GCTATCTTCCTGTTATTCAA+TGG - chr3_2:77747067-77747086 Msa0427070:CDS 35.0%
TTAATGAAATCAGACGAGGA+AGG + chr3_2:77745268-77745287 None:intergenic 35.0%
TTTATCTGATTATCTGGTGC+TGG - chr3_2:77745288-77745307 Msa0427070:three_prime_UTR 35.0%
AACTGAATCATCAGACAACA+AGG - chr3_2:77745348-77745367 Msa0427070:three_prime_UTR 35.0%
!! TTAATATCAATGGTGGTGGA+AGG + chr3_2:77745376-77745395 None:intergenic 35.0%
GACATTAATATCAATGGTGG+TGG + chr3_2:77745380-77745399 None:intergenic 35.0%
! GTTATTGTTGTTGTTGGTAG+AGG + chr3_2:77745437-77745456 None:intergenic 35.0%
!! TTTGGATTCTTTGGTTTGAC+AGG - chr3_2:77745546-77745565 Msa0427070:CDS 35.0%
TTTGACAGGAAACGTAAAAG+CGG - chr3_2:77745560-77745579 Msa0427070:CDS 35.0%
AAGAGTAATTACCTTGGGTA+TGG + chr3_2:77745710-77745729 None:intergenic 35.0%
TGTACGGCATGATATTGATA+GGG + chr3_2:77745872-77745891 None:intergenic 35.0%
!! CGTACACAACTTTTAACTCA+AGG - chr3_2:77745886-77745905 Msa0427070:intron 35.0%
TTGGATAGGAAATAGGATAG+TGG - chr3_2:77746074-77746093 Msa0427070:intron 35.0%
!! TGATATATGCTAGTTGATGG+AGG - chr3_2:77746146-77746165 Msa0427070:intron 35.0%
!! GATATATGCTAGTTGATGGA+GGG - chr3_2:77746147-77746166 Msa0427070:intron 35.0%
!! ATATATGCTAGTTGATGGAG+GGG - chr3_2:77746148-77746167 Msa0427070:intron 35.0%
!! AAAAGTGCCATTATTTACGG+GGG + chr3_2:77746515-77746534 None:intergenic 35.0%
!! CAAAAGTGCCATTATTTACG+GGG + chr3_2:77746516-77746535 None:intergenic 35.0%
!! GCAAAAGTGCCATTATTTAC+GGG + chr3_2:77746517-77746536 None:intergenic 35.0%
AGATGTGTACATATACAAGC+AGG - chr3_2:77746739-77746758 Msa0427070:CDS 35.0%
TATGTGCTAACAAGCTATGA+AGG - chr3_2:77746834-77746853 Msa0427070:intron 35.0%
! CTTTGGTGTATTCCAATGAA+TGG - chr3_2:77746904-77746923 Msa0427070:CDS 35.0%
!!! GCTGCTTTTAATAAAAGGCT+AGG - chr3_2:77747014-77747033 Msa0427070:CDS 35.0%
!! ATCGAGTTGGTAAGTTGTAT+TGG - chr3_2:77747045-77747064 Msa0427070:CDS 35.0%
GCTATCTTCCTGTTATTCAA+TGG - chr3_2:77747067-77747086 Msa0427070:CDS 35.0%
GAATGTTGGTCACAAAGTAC+AGG - chr3_2:77745325-77745344 Msa0427070:three_prime_UTR 40.0%
TTGACAGGAAACGTAAAAGC+GGG - chr3_2:77745561-77745580 Msa0427070:CDS 40.0%
! TCGTTCTAAACGTCACTCTT+GGG + chr3_2:77745616-77745635 None:intergenic 40.0%
CAGCTTGAGATTATGGATGA+TGG - chr3_2:77745641-77745660 Msa0427070:intron 40.0%
!! TGGATGATGGATTCAAATGG+AGG - chr3_2:77745654-77745673 Msa0427070:intron 40.0%
GGATTCAAATGGAGGAAGTA+TGG - chr3_2:77745662-77745681 Msa0427070:intron 40.0%
TCAAGAATAGTCCATACCCA+AGG - chr3_2:77745696-77745715 Msa0427070:intron 40.0%
TATGACGTATGTAGCCAAGA+AGG + chr3_2:77745759-77745778 None:intergenic 40.0%
GTGTACGGCATGATATTGAT+AGG + chr3_2:77745873-77745892 None:intergenic 40.0%
! AATCGATGTCCTAAGAGCAT+TGG + chr3_2:77746035-77746054 None:intergenic 40.0%
! GATAGGAAATAGGATAGTGG+TGG - chr3_2:77746077-77746096 Msa0427070:intron 40.0%
GGCTGATATATGCTAGTTGA+TGG - chr3_2:77746143-77746162 Msa0427070:intron 40.0%
!! TATATGCTAGTTGATGGAGG+GGG - chr3_2:77746149-77746168 Msa0427070:intron 40.0%
TGGTTTCCATTTGTTTGTCC+TGG - chr3_2:77746355-77746374 Msa0427070:intron 40.0%
TCGATTCCAGGACAAACAAA+TGG + chr3_2:77746364-77746383 None:intergenic 40.0%
!! CTACTACTTTTCTCGATTCC+AGG + chr3_2:77746376-77746395 None:intergenic 40.0%
AGGAACTACTACAAGTGTTC+AGG - chr3_2:77746759-77746778 Msa0427070:intron 40.0%
TACTACAAGTGTTCAGGTGA+AGG - chr3_2:77746765-77746784 Msa0427070:intron 40.0%
AAGGATGTGGTGTGAAGAAA+AGG - chr3_2:77746784-77746803 Msa0427070:intron 40.0%
AGGATGTGGTGTGAAGAAAA+GGG - chr3_2:77746785-77746804 Msa0427070:intron 40.0%
TGTGAAGAAAAGGGTGGAAA+GGG - chr3_2:77746794-77746813 Msa0427070:intron 40.0%
TGGAATACACCAAAGACACT+GGG + chr3_2:77746899-77746918 None:intergenic 40.0%
TTGGAATACACCAAAGACAC+TGG + chr3_2:77746900-77746919 None:intergenic 40.0%
GAATGTTGGTCACAAAGTAC+AGG - chr3_2:77745325-77745344 Msa0427070:three_prime_UTR 40.0%
TTGACAGGAAACGTAAAAGC+GGG - chr3_2:77745561-77745580 Msa0427070:CDS 40.0%
! TCGTTCTAAACGTCACTCTT+GGG + chr3_2:77745616-77745635 None:intergenic 40.0%
CAGCTTGAGATTATGGATGA+TGG - chr3_2:77745641-77745660 Msa0427070:intron 40.0%
!! TGGATGATGGATTCAAATGG+AGG - chr3_2:77745654-77745673 Msa0427070:intron 40.0%
GGATTCAAATGGAGGAAGTA+TGG - chr3_2:77745662-77745681 Msa0427070:intron 40.0%
TCAAGAATAGTCCATACCCA+AGG - chr3_2:77745696-77745715 Msa0427070:intron 40.0%
TATGACGTATGTAGCCAAGA+AGG + chr3_2:77745759-77745778 None:intergenic 40.0%
GTGTACGGCATGATATTGAT+AGG + chr3_2:77745873-77745892 None:intergenic 40.0%
! AATCGATGTCCTAAGAGCAT+TGG + chr3_2:77746035-77746054 None:intergenic 40.0%
! GATAGGAAATAGGATAGTGG+TGG - chr3_2:77746077-77746096 Msa0427070:intron 40.0%
GGCTGATATATGCTAGTTGA+TGG - chr3_2:77746143-77746162 Msa0427070:intron 40.0%
!! TATATGCTAGTTGATGGAGG+GGG - chr3_2:77746149-77746168 Msa0427070:intron 40.0%
TGGTTTCCATTTGTTTGTCC+TGG - chr3_2:77746355-77746374 Msa0427070:intron 40.0%
TCGATTCCAGGACAAACAAA+TGG + chr3_2:77746364-77746383 None:intergenic 40.0%
!! CTACTACTTTTCTCGATTCC+AGG + chr3_2:77746376-77746395 None:intergenic 40.0%
AGGAACTACTACAAGTGTTC+AGG - chr3_2:77746759-77746778 Msa0427070:intron 40.0%
TACTACAAGTGTTCAGGTGA+AGG - chr3_2:77746765-77746784 Msa0427070:intron 40.0%
AAGGATGTGGTGTGAAGAAA+AGG - chr3_2:77746784-77746803 Msa0427070:intron 40.0%
AGGATGTGGTGTGAAGAAAA+GGG - chr3_2:77746785-77746804 Msa0427070:intron 40.0%
TGTGAAGAAAAGGGTGGAAA+GGG - chr3_2:77746794-77746813 Msa0427070:intron 40.0%
TGGAATACACCAAAGACACT+GGG + chr3_2:77746899-77746918 None:intergenic 40.0%
TTGGAATACACCAAAGACAC+TGG + chr3_2:77746900-77746919 None:intergenic 40.0%
ATGAAATCAGACGAGGAAGG+AGG + chr3_2:77745265-77745284 None:intergenic 45.0%
TGACAGGAAACGTAAAAGCG+GGG - chr3_2:77745562-77745581 Msa0427070:CDS 45.0%
! CTCGTTCTAAACGTCACTCT+TGG + chr3_2:77745617-77745636 None:intergenic 45.0%
GAGATCGCAGCTTGAGATTA+TGG - chr3_2:77745634-77745653 Msa0427070:intron 45.0%
! AGGAAATAGGATAGTGGTGG+TGG - chr3_2:77746080-77746099 Msa0427070:intron 45.0%
! GGAAATAGGATAGTGGTGGT+GGG - chr3_2:77746081-77746100 Msa0427070:intron 45.0%
!! ATATGCTAGTTGATGGAGGG+GGG - chr3_2:77746150-77746169 Msa0427070:intron 45.0%
ACACGCAAGCTCAACAAGTA+GGG + chr3_2:77746328-77746347 None:intergenic 45.0%
TACACGCAAGCTCAACAAGT+AGG + chr3_2:77746329-77746348 None:intergenic 45.0%
TGAGCTTGCGTGTATATGTG+TGG - chr3_2:77746335-77746354 Msa0427070:intron 45.0%
AGCTAGTCCCCCGTAAATAA+TGG - chr3_2:77746505-77746524 Msa0427070:intron 45.0%
AAGAGAGAGATTCTGTGCAC+TGG - chr3_2:77746580-77746599 Msa0427070:intron 45.0%
AGAGAGAGATTCTGTGCACT+GGG - chr3_2:77746581-77746600 Msa0427070:intron 45.0%
GGACTGTTGTTGATCTCATC+AGG - chr3_2:77746602-77746621 Msa0427070:intron 45.0%
CTGTTGTTGATCTCATCAGG+TGG - chr3_2:77746605-77746624 Msa0427070:intron 45.0%
AAGTGTTCAGGTGAAGGATG+TGG - chr3_2:77746771-77746790 Msa0427070:intron 45.0%
ATGTGGTGTGAAGAAAAGGG+TGG - chr3_2:77746788-77746807 Msa0427070:intron 45.0%
GTGTGAAGAAAAGGGTGGAA+AGG - chr3_2:77746793-77746812 Msa0427070:intron 45.0%
AGAAAAGGGTGGAAAGGGAT+AGG - chr3_2:77746799-77746818 Msa0427070:intron 45.0%
GAAAAGGGTGGAAAGGGATA+GGG - chr3_2:77746800-77746819 Msa0427070:intron 45.0%
GGAATACACCAAAGACACTG+GGG + chr3_2:77746898-77746917 None:intergenic 45.0%
TGGAAGAAGAGGTTGCAGAA+GGG + chr3_2:77746941-77746960 None:intergenic 45.0%
TTGGAAGAAGAGGTTGCAGA+AGG + chr3_2:77746942-77746961 None:intergenic 45.0%
TCATATCCTTAACCAGTGCC+CGG + chr3_2:77747111-77747130 None:intergenic 45.0%
ATGAAATCAGACGAGGAAGG+AGG + chr3_2:77745265-77745284 None:intergenic 45.0%
TGACAGGAAACGTAAAAGCG+GGG - chr3_2:77745562-77745581 Msa0427070:CDS 45.0%
! CTCGTTCTAAACGTCACTCT+TGG + chr3_2:77745617-77745636 None:intergenic 45.0%
GAGATCGCAGCTTGAGATTA+TGG - chr3_2:77745634-77745653 Msa0427070:intron 45.0%
! AGGAAATAGGATAGTGGTGG+TGG - chr3_2:77746080-77746099 Msa0427070:intron 45.0%
! GGAAATAGGATAGTGGTGGT+GGG - chr3_2:77746081-77746100 Msa0427070:intron 45.0%
!! ATATGCTAGTTGATGGAGGG+GGG - chr3_2:77746150-77746169 Msa0427070:intron 45.0%
ACACGCAAGCTCAACAAGTA+GGG + chr3_2:77746328-77746347 None:intergenic 45.0%
TACACGCAAGCTCAACAAGT+AGG + chr3_2:77746329-77746348 None:intergenic 45.0%
TGAGCTTGCGTGTATATGTG+TGG - chr3_2:77746335-77746354 Msa0427070:intron 45.0%
AGCTAGTCCCCCGTAAATAA+TGG - chr3_2:77746505-77746524 Msa0427070:intron 45.0%
AAGAGAGAGATTCTGTGCAC+TGG - chr3_2:77746580-77746599 Msa0427070:intron 45.0%
AGAGAGAGATTCTGTGCACT+GGG - chr3_2:77746581-77746600 Msa0427070:intron 45.0%
GGACTGTTGTTGATCTCATC+AGG - chr3_2:77746602-77746621 Msa0427070:intron 45.0%
CTGTTGTTGATCTCATCAGG+TGG - chr3_2:77746605-77746624 Msa0427070:intron 45.0%
AAGTGTTCAGGTGAAGGATG+TGG - chr3_2:77746771-77746790 Msa0427070:intron 45.0%
ATGTGGTGTGAAGAAAAGGG+TGG - chr3_2:77746788-77746807 Msa0427070:intron 45.0%
GTGTGAAGAAAAGGGTGGAA+AGG - chr3_2:77746793-77746812 Msa0427070:intron 45.0%
AGAAAAGGGTGGAAAGGGAT+AGG - chr3_2:77746799-77746818 Msa0427070:intron 45.0%
GAAAAGGGTGGAAAGGGATA+GGG - chr3_2:77746800-77746819 Msa0427070:intron 45.0%
GGAATACACCAAAGACACTG+GGG + chr3_2:77746898-77746917 None:intergenic 45.0%
TGGAAGAAGAGGTTGCAGAA+GGG + chr3_2:77746941-77746960 None:intergenic 45.0%
TTGGAAGAAGAGGTTGCAGA+AGG + chr3_2:77746942-77746961 None:intergenic 45.0%
TCATATCCTTAACCAGTGCC+CGG + chr3_2:77747111-77747130 None:intergenic 45.0%
AAATCAGACGAGGAAGGAGG+AGG + chr3_2:77745262-77745281 None:intergenic 50.0%
ACGTAAAAGCGGGGAGATGA+AGG - chr3_2:77745571-77745590 Msa0427070:intron 50.0%
!! ATAGTGGTGGTGGGTCTGAT+TGG - chr3_2:77746090-77746109 Msa0427070:intron 50.0%
!! GGACTAGCTAGCTAGCAAGT+GGG + chr3_2:77746494-77746513 None:intergenic 50.0%
GGGTGCAGTATGAATTGCAG+GGG + chr3_2:77746878-77746897 None:intergenic 50.0%
GGGGTGCAGTATGAATTGCA+GGG + chr3_2:77746879-77746898 None:intergenic 50.0%
TGGGGTGCAGTATGAATTGC+AGG + chr3_2:77746880-77746899 None:intergenic 50.0%
ATACTGCACCCCAGTGTCTT+TGG - chr3_2:77746887-77746906 Msa0427070:CDS 50.0%
CTAGGAAGGTCTGATCGAGT+TGG - chr3_2:77747032-77747051 Msa0427070:CDS 50.0%
ATATCCTTAACCAGTGCCCG+GGG + chr3_2:77747109-77747128 None:intergenic 50.0%
CATATCCTTAACCAGTGCCC+GGG + chr3_2:77747110-77747129 None:intergenic 50.0%
AAATCAGACGAGGAAGGAGG+AGG + chr3_2:77745262-77745281 None:intergenic 50.0%
ACGTAAAAGCGGGGAGATGA+AGG - chr3_2:77745571-77745590 Msa0427070:intron 50.0%
!! ATAGTGGTGGTGGGTCTGAT+TGG - chr3_2:77746090-77746109 Msa0427070:intron 50.0%
!! GGACTAGCTAGCTAGCAAGT+GGG + chr3_2:77746494-77746513 None:intergenic 50.0%
GGGTGCAGTATGAATTGCAG+GGG + chr3_2:77746878-77746897 None:intergenic 50.0%
GGGGTGCAGTATGAATTGCA+GGG + chr3_2:77746879-77746898 None:intergenic 50.0%
TGGGGTGCAGTATGAATTGC+AGG + chr3_2:77746880-77746899 None:intergenic 50.0%
ATACTGCACCCCAGTGTCTT+TGG - chr3_2:77746887-77746906 Msa0427070:CDS 50.0%
CTAGGAAGGTCTGATCGAGT+TGG - chr3_2:77747032-77747051 Msa0427070:CDS 50.0%
ATATCCTTAACCAGTGCCCG+GGG + chr3_2:77747109-77747128 None:intergenic 50.0%
CATATCCTTAACCAGTGCCC+GGG + chr3_2:77747110-77747129 None:intergenic 50.0%
!! GGGACTAGCTAGCTAGCAAG+TGG + chr3_2:77746495-77746514 None:intergenic 55.0%
! GTGCTGCTGTGGCCATTCAT+TGG + chr3_2:77746919-77746938 None:intergenic 55.0%
GAAATGTTAACCGGTGCCCC+CGG - chr3_2:77747089-77747108 Msa0427070:CDS 55.0%
AAATGTTAACCGGTGCCCCC+GGG - chr3_2:77747090-77747109 Msa0427070:CDS 55.0%
TATCCTTAACCAGTGCCCGG+GGG + chr3_2:77747108-77747127 None:intergenic 55.0%
!! GGGACTAGCTAGCTAGCAAG+TGG + chr3_2:77746495-77746514 None:intergenic 55.0%
! GTGCTGCTGTGGCCATTCAT+TGG + chr3_2:77746919-77746938 None:intergenic 55.0%
GAAATGTTAACCGGTGCCCC+CGG - chr3_2:77747089-77747108 Msa0427070:CDS 55.0%
AAATGTTAACCGGTGCCCCC+GGG - chr3_2:77747090-77747109 Msa0427070:CDS 55.0%
TATCCTTAACCAGTGCCCGG+GGG + chr3_2:77747108-77747127 None:intergenic 55.0%
!! GTTGCAGAAGGGTGCTGCTG+TGG + chr3_2:77746930-77746949 None:intergenic 60.0%
!! GTTGCAGAAGGGTGCTGCTG+TGG + chr3_2:77746930-77746949 None:intergenic 60.0%
! TAACCAGTGCCCGGGGGCAC+CGG + chr3_2:77747102-77747121 None:intergenic 70.0%
!! GTGCCCCCGGGCACTGGTTA+AGG - chr3_2:77747102-77747121 Msa0427070:CDS 70.0%
! TAACCAGTGCCCGGGGGCAC+CGG + chr3_2:77747102-77747121 None:intergenic 70.0%
!! GTGCCCCCGGGCACTGGTTA+AGG - chr3_2:77747102-77747121 Msa0427070:CDS 70.0%
TAACCGGTGCCCCCGGGCAC+TGG - chr3_2:77747096-77747115 Msa0427070:CDS 75.0%
TAACCGGTGCCCCCGGGCAC+TGG - chr3_2:77747096-77747115 Msa0427070:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 77745208 77747136 77745208 ID=Msa0427070;Name=Msa0427070
chr3_2 mRNA 77745208 77747136 77745208 ID=Msa0427070-mRNA-1;Parent=Msa0427070;Name=Msa0427070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|1|1|1|3|171|204
chr3_2 exon 77745208 77745583 77745208 ID=Msa0427070-mRNA-1:exon:20333;Parent=Msa0427070-mRNA-1
chr3_2 exon 77746627 77746776 77746627 ID=Msa0427070-mRNA-1:exon:20332;Parent=Msa0427070-mRNA-1
chr3_2 exon 77746877 77747136 77746877 ID=Msa0427070-mRNA-1:exon:20331;Parent=Msa0427070-mRNA-1
chr3_2 CDS 77746877 77747136 77746877 ID=Msa0427070-mRNA-1:cds;Parent=Msa0427070-mRNA-1
chr3_2 CDS 77746627 77746776 77746627 ID=Msa0427070-mRNA-1:cds;Parent=Msa0427070-mRNA-1
chr3_2 CDS 77745379 77745583 77745379 ID=Msa0427070-mRNA-1:cds;Parent=Msa0427070-mRNA-1
chr3_2 three_prime_UTR 77745208 77745378 77745208 ID=Msa0427070-mRNA-1:three_prime_utr;Parent=Msa0427070-mRNA-1
Gene Sequence

>Msa0427070

ATGTATTTTGGAAACCCTAATTCTAACCCTTATCACAATAATAATATATCTCCTCCTCCTTCCTCGTCTGATTTCATTAATTTATCTGATTATCTGGTGCTGGATGATGAACATCAAGAATGTTGGTCACAAAGTACAGGAACTGAATCATCAGACAACAAGGCACCTTCCACCACCATTGATATTAATGTCATCAATCAAGGATTAATTTGTGATGAAATTGAAACCTCTACCAACAACAACAATAACATGATGCAAGTGAAACGTAAAAGCGGGGAGATGAAGGAAAATACAGTAGACGTGAGCCCAAGAGTGACGTTTAGAACGAGATCGCAGCTTGAGATTATGGATGATGGATTCAAATGGAGGAAGTATGGAAAGAAGTCTGTCAAGAATAGTCCATACCCAAGGAACTACTACAAGTGTTCAGGTGAAGGATGTGGTGTGAAGAAAAGGGTGGAAAGGGATAGGGAAGATTCAAGCTATGTGCTAACAAGCTATGAAGGTGTTCACAATCATGAAAGCCCCTGCAATTCATACTGCACCCCAGTGTCTTTGGTGTATTCCAATGAATGGCCACAGCAGCACCCTTCTGCAACCTCTTCTTCCAATTAA
Protein sequence

>Msa0427070

MYFGNPNSNPYHNNNISPPPSSSDFINLSDYLVLDDEHQECWSQSTGTESSDNKAPSTTIDINVINQGLICDEIETSTNNNNNMMQVKRKSGEMKENTVDVSPRVTFRTRSQLEIMDDGFKWRKYGKKSVKNSPYPRNYYKCSGEGCGVKKRVERDREDSSYVLTSYEGVHNHESPCNSYCTPVSLVYSNEWPQQHPSATSSSN*