AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1385920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385920 MtrunA17_Chr3g0129321 95.610 205 6 2 1 204 3 205 1.13e-141 393
Msa1385920 MtrunA17_Chr8g0383251 51.020 196 75 6 2 192 4 183 4.69e-57 178
Msa1385920 MtrunA17_Chr1g0150801 46.111 180 64 6 9 177 5 162 6.90e-38 129
Msa1385920 MtrunA17_Chr2g0294231 59.740 77 31 0 103 179 189 265 1.90e-29 112
Msa1385920 MtrunA17_Chr4g0051881 46.667 105 43 1 103 194 164 268 6.36e-29 110
Msa1385920 MtrunA17_Chr8g0335811 54.255 94 33 2 85 178 131 214 3.82e-28 105
Msa1385920 MtrunA17_Chr4g0068541 62.162 74 28 0 104 177 195 268 4.92e-28 108
Msa1385920 MtrunA17_Chr5g0443131 57.333 75 32 0 103 177 143 217 8.13e-28 106
Msa1385920 MtrunA17_Chr1g0194481 50.000 94 44 1 86 179 130 220 6.87e-27 104
Msa1385920 MtrunA17_Chr7g0224801 57.353 68 29 0 106 173 82 149 1.20e-26 100
Msa1385920 MtrunA17_Chr5g0418781 45.192 104 56 1 72 175 80 182 1.02e-25 100
Msa1385920 MtrunA17_Chr7g0270191 39.823 113 67 1 72 184 101 212 1.92e-25 100
Msa1385920 MtrunA17_Chr8g0386241 55.714 70 31 0 104 173 90 159 2.51e-25 97.1
Msa1385920 MtrunA17_Chr7g0218081 52.000 75 36 0 103 177 396 470 2.74e-25 102
Msa1385920 MtrunA17_Chr7g0218081 56.667 60 25 1 117 176 228 286 3.46e-15 73.2
Msa1385920 MtrunA17_Chr7g0248721 50.526 95 43 3 83 177 108 198 2.97e-25 97.8
Msa1385920 MtrunA17_Chr7g0249311 56.000 75 33 0 103 177 378 452 5.79e-25 101
Msa1385920 MtrunA17_Chr7g0249311 52.381 63 29 1 117 179 179 240 3.73e-14 70.5
Msa1385920 MtrunA17_Chr7g0249301 53.947 76 35 0 102 177 277 352 6.16e-25 100
Msa1385920 MtrunA17_Chr7g0249301 50.000 64 31 1 116 179 61 123 3.59e-13 67.4
Msa1385920 MtrunA17_Chr5g0445311 37.013 154 76 3 45 177 271 424 6.21e-25 101
Msa1385920 MtrunA17_Chr5g0445311 48.333 60 30 1 117 176 200 258 4.81e-12 64.3
Msa1385920 MtrunA17_Chr3g0129361 56.579 76 32 1 103 178 130 204 6.37e-25 97.1
Msa1385920 MtrunA17_Chr3g0079691 36.620 142 81 2 49 190 436 568 6.48e-25 101
Msa1385920 MtrunA17_Chr3g0079691 53.333 60 27 1 117 176 280 338 2.61e-14 70.9
Msa1385920 MtrunA17_Chr5g0418191 52.000 75 36 0 103 177 306 380 7.32e-25 100
Msa1385920 MtrunA17_Chr5g0418191 51.667 60 28 1 117 176 151 209 2.33e-13 67.8
Msa1385920 MtrunA17_Chr7g0243891 38.272 162 90 3 17 177 282 434 8.81e-25 100
Msa1385920 MtrunA17_Chr7g0243891 51.667 60 28 1 117 176 216 274 1.16e-13 68.9
Msa1385920 MtrunA17_Chr4g0004911 54.667 75 34 0 103 177 322 396 2.88e-24 99.4
Msa1385920 MtrunA17_Chr4g0004911 49.254 67 34 0 110 176 177 243 1.70e-15 74.3
Msa1385920 MtrunA17_Chr4g0042831 52.000 75 36 0 103 177 264 338 5.57e-24 97.8
Msa1385920 MtrunA17_Chr4g0042831 35.256 156 74 4 48 203 98 226 1.33e-15 74.3
Msa1385920 MtrunA17_Chr8g0383351 57.143 77 31 2 103 178 145 220 9.02e-24 94.4
Msa1385920 MtrunA17_Chr3g0101131 54.054 74 34 0 103 176 401 474 9.68e-24 98.2
Msa1385920 MtrunA17_Chr3g0101131 48.333 60 30 1 117 176 243 301 7.41e-12 63.5
Msa1385920 MtrunA17_Chr3g0106491 53.333 75 35 0 103 177 351 425 2.68e-23 96.7
Msa1385920 MtrunA17_Chr3g0106491 44.000 75 37 2 107 177 184 257 2.41e-13 67.8
Msa1385920 MtrunA17_Chr5g0432161 45.833 96 46 1 82 177 392 481 1.09e-22 95.1
Msa1385920 MtrunA17_Chr5g0432161 51.667 60 28 1 117 176 244 302 1.10e-12 66.2
Msa1385920 MtrunA17_Chr6g0485431 36.296 135 76 4 50 176 82 214 1.34e-22 93.6
Msa1385920 MtrunA17_Chr7g0263531 45.263 95 46 1 88 176 326 420 3.51e-22 93.2
Msa1385920 MtrunA17_Chr7g0263531 54.237 59 26 1 118 176 190 247 1.22e-13 68.6
Msa1385920 MtrunA17_Chr7g0270831 36.220 127 65 3 66 176 150 276 6.86e-21 89.4
Msa1385920 MtrunA17_Chr5g0447701 52.055 73 35 0 104 176 239 311 9.11e-21 89.0
Msa1385920 MtrunA17_Chr5g0447701 44.444 63 34 1 114 176 89 150 8.16e-11 60.5
Msa1385920 MtrunA17_Chr7g0238921 34.752 141 81 4 62 197 64 198 1.37e-20 87.4
Msa1385920 MtrunA17_Chr3g0099641 50.000 74 36 1 104 176 238 311 6.87e-20 86.7
Msa1385920 MtrunA17_Chr2g0302391 51.351 74 35 1 104 176 198 271 8.65e-20 86.3
Msa1385920 MtrunA17_Chr4g0075201 48.649 74 37 1 104 176 254 327 1.28e-19 86.3
Msa1385920 MtrunA17_Chr2g0288871 48.649 74 37 1 104 176 292 365 1.53e-19 85.9
Msa1385920 MtrunA17_Chr1g0189391 49.333 75 37 1 100 173 80 154 2.87e-19 84.0
Msa1385920 MtrunA17_Chr4g0074001 44.000 75 42 0 103 177 345 419 3.14e-19 85.1
Msa1385920 MtrunA17_Chr1g0188941 44.595 74 41 0 103 176 37 110 8.35e-19 78.2
Msa1385920 MtrunA17_Chr2g0333851 35.556 135 68 5 89 204 138 272 1.51e-18 82.0
Msa1385920 MtrunA17_Chr4g0053281 44.186 86 44 2 89 173 241 323 2.04e-18 81.6
Msa1385920 MtrunA17_Chr4g0051181 48.000 75 38 1 104 177 230 304 2.11e-18 82.4
Msa1385920 MtrunA17_Chr2g0322391 47.297 74 38 1 104 176 336 409 2.24e-18 82.8
Msa1385920 MtrunA17_Chr4g0060271 44.706 85 46 1 93 176 231 315 4.45e-18 81.6
Msa1385920 MtrunA17_Chr4g0025051 49.351 77 38 1 104 179 322 398 5.13e-18 81.6
Msa1385920 MtrunA17_Chr3g0136961 52.542 59 27 1 116 173 137 195 5.94e-17 77.4
Msa1385920 MtrunA17_Chr7g0216891 46.479 71 37 1 104 173 206 276 1.06e-16 77.8
Msa1385920 MtrunA17_Chr2g0293481 34.711 121 75 2 57 176 210 327 1.11e-16 77.8
Msa1385920 MtrunA17_Chr2g0319961 41.758 91 50 2 89 176 50 140 1.26e-16 75.9
Msa1385920 MtrunA17_Chr5g0401821 44.706 85 43 2 90 173 175 256 1.36e-16 75.9
Msa1385920 MtrunA17_Chr1g0147881 45.455 88 42 4 87 173 237 319 1.41e-16 76.6
Msa1385920 MtrunA17_Chr7g0270051 42.553 94 42 3 90 176 25 113 1.82e-16 75.5
Msa1385920 MtrunA17_Chr5g0447711 28.409 176 106 4 3 176 132 289 2.46e-16 75.9
Msa1385920 MtrunA17_Chr8g0379461 47.143 70 36 1 118 186 77 146 2.97e-16 74.7
Msa1385920 MtrunA17_Chr4g0071521 44.828 87 41 2 88 173 222 302 3.07e-16 75.5
Msa1385920 MtrunA17_Chr4g0001361 49.206 63 31 1 115 176 160 222 1.31e-15 73.9
Msa1385920 MtrunA17_Chr4g0025061 45.333 75 40 1 104 177 347 421 2.20e-15 73.9
Msa1385920 MtrunA17_Chr8g0348311 45.455 66 35 1 114 178 152 217 3.72e-15 72.8
Msa1385920 MtrunA17_Chr1g0202461 47.619 63 32 1 115 176 259 321 5.67e-15 72.4
Msa1385920 MtrunA17_Chr8g0387501 50.000 60 29 1 118 176 130 189 1.01e-14 70.9
Msa1385920 MtrunA17_Chr7g0248691 47.619 63 32 1 115 176 152 214 1.38e-14 70.9
Msa1385920 MtrunA17_Chr1g0184691 41.250 80 46 1 95 173 271 350 2.04e-14 70.9
Msa1385920 MtrunA17_Chr1g0150281 47.368 57 29 1 118 173 141 197 3.30e-14 69.7
Msa1385920 MtrunA17_Chr2g0284321 48.333 60 30 1 118 176 36 95 1.17e-13 67.0
Msa1385920 MtrunA17_Chr7g0228941 32.632 95 63 1 94 187 29 123 2.20e-13 64.3
Msa1385920 MtrunA17_Chr1g0150271 38.095 84 47 2 115 193 99 182 5.38e-13 65.9
Msa1385920 MtrunA17_Chr2g0289181 43.750 64 35 1 114 176 11 74 8.73e-13 65.1
Msa1385920 MtrunA17_Chr3g0139021 37.500 88 46 3 88 173 291 371 9.91e-13 65.9
Msa1385920 MtrunA17_Chr4g0024391 40.000 75 44 1 104 177 216 290 7.57e-12 63.5
Msa1385920 MtrunA17_Chr5g0432071 47.619 63 32 1 117 179 104 165 2.19e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385920 AT5G64810.1 60.185 108 42 1 89 196 83 189 2.13e-40 136
Msa1385920 AT5G26170.1 75.000 72 18 0 104 175 100 171 7.63e-37 127
Msa1385920 AT4G18170.1 50.526 95 45 1 86 178 139 233 2.60e-28 108
Msa1385920 AT5G41570.1 50.000 92 44 1 86 177 67 156 3.19e-28 105
Msa1385920 AT2G46130.1 58.667 75 29 1 103 177 16 88 4.77e-28 102
Msa1385920 AT3G01970.1 60.000 70 28 0 104 173 52 121 6.59e-28 103
Msa1385920 AT5G49520.1 59.459 74 30 0 104 177 208 281 1.16e-27 108
Msa1385920 AT1G29860.1 58.904 73 30 0 104 176 123 195 3.81e-27 104
Msa1385920 AT5G46350.1 55.263 76 34 0 103 178 169 244 5.06e-27 105
Msa1385920 AT2G21900.1 45.455 99 46 2 86 181 80 173 7.07e-27 102
Msa1385920 AT2G44745.1 51.648 91 35 1 83 173 120 201 7.25e-27 102
Msa1385920 AT1G13960.2 55.405 74 33 0 103 176 242 315 4.12e-26 103
Msa1385920 AT1G13960.2 54.688 64 28 1 116 179 75 137 1.30e-16 77.4
Msa1385920 AT3G62340.1 54.217 83 38 0 95 177 96 178 5.42e-26 101
Msa1385920 AT2G47260.1 56.579 76 33 0 104 179 161 236 5.50e-26 102
Msa1385920 AT1G13960.1 38.889 144 78 3 37 176 331 468 8.93e-26 103
Msa1385920 AT1G13960.1 55.556 63 27 1 117 179 229 290 1.27e-16 77.8
Msa1385920 AT5G13080.1 57.143 70 30 0 104 173 54 123 9.21e-26 97.4
Msa1385920 AT1G69310.4 54.795 73 33 0 103 175 133 205 3.50e-25 99.8
Msa1385920 AT1G69310.2 54.795 73 33 0 103 175 133 205 3.50e-25 99.8
Msa1385920 AT1G69310.1 54.795 73 33 0 103 175 133 205 3.50e-25 99.8
Msa1385920 AT1G64000.1 51.220 82 38 1 104 185 101 180 6.63e-25 96.7
Msa1385920 AT2G03340.1 53.333 75 35 0 103 177 401 475 8.44e-25 101
Msa1385920 AT2G03340.1 42.105 95 50 2 86 176 215 308 1.00e-15 75.1
Msa1385920 AT4G39410.1 47.872 94 39 2 85 178 200 283 2.19e-24 97.8
Msa1385920 AT2G30250.1 49.485 97 42 2 87 176 291 387 2.21e-24 99.4
Msa1385920 AT2G04880.2 44.444 99 47 1 92 182 250 348 2.90e-24 99.4
Msa1385920 AT2G04880.1 44.444 99 47 1 92 182 274 372 3.48e-24 99.4
Msa1385920 AT5G56270.1 50.000 88 43 1 91 177 460 547 8.66e-24 98.6
Msa1385920 AT5G56270.1 55.000 60 26 1 117 176 273 331 1.23e-14 72.4
Msa1385920 AT2G46130.2 56.000 75 27 2 103 177 16 84 1.00e-23 91.3
Msa1385920 AT5G07100.2 50.549 91 41 2 86 176 114 200 1.42e-23 94.0
Msa1385920 AT5G07100.2 46.667 60 32 0 117 176 24 83 1.41e-11 61.6
Msa1385920 AT5G07100.4 50.549 91 41 2 86 176 114 200 1.42e-23 94.0
Msa1385920 AT5G07100.4 46.667 60 32 0 117 176 24 83 1.41e-11 61.6
Msa1385920 AT5G07100.5 50.549 91 41 2 86 176 114 200 1.42e-23 94.0
Msa1385920 AT5G07100.5 46.667 60 32 0 117 176 24 83 1.41e-11 61.6
Msa1385920 AT5G07100.3 50.549 91 41 2 86 176 114 200 1.42e-23 94.0
Msa1385920 AT5G07100.3 46.667 60 32 0 117 176 24 83 1.41e-11 61.6
Msa1385920 AT4G26640.5 52.000 75 36 0 103 177 191 265 1.82e-23 96.7
Msa1385920 AT4G26640.5 39.080 87 52 1 115 201 33 118 4.22e-13 67.4
Msa1385920 AT4G26640.6 52.000 75 36 0 103 177 191 265 1.82e-23 96.7
Msa1385920 AT4G26640.6 39.080 87 52 1 115 201 33 118 4.22e-13 67.4
Msa1385920 AT4G26640.4 52.000 75 36 0 103 177 191 265 1.82e-23 96.7
Msa1385920 AT4G26640.4 39.080 87 52 1 115 201 33 118 4.22e-13 67.4
Msa1385920 AT4G26640.3 52.000 75 36 0 103 177 191 265 1.82e-23 96.7
Msa1385920 AT4G26640.3 39.080 87 52 1 115 201 33 118 4.22e-13 67.4
Msa1385920 AT5G07100.1 50.549 91 41 2 86 176 207 293 2.08e-23 95.5
Msa1385920 AT5G07100.1 35.714 112 60 3 77 176 65 176 5.61e-12 63.9
Msa1385920 AT4G26640.7 52.000 75 36 0 103 177 327 401 2.45e-23 97.1
Msa1385920 AT4G26640.7 39.535 86 51 1 115 200 169 253 5.13e-13 67.4
Msa1385920 AT4G26640.1 52.000 75 36 0 103 177 295 369 2.80e-23 97.1
Msa1385920 AT4G26640.1 39.535 86 51 1 115 200 137 221 5.21e-13 67.4
Msa1385920 AT2G38470.1 53.333 75 35 0 103 177 348 422 2.88e-23 97.1
Msa1385920 AT2G38470.1 45.833 72 37 2 105 176 173 242 5.83e-12 64.3
Msa1385920 AT4G26640.2 52.000 75 36 0 103 177 367 441 2.99e-23 97.1
Msa1385920 AT4G26640.2 39.535 86 51 1 115 200 209 293 5.16e-13 67.4
Msa1385920 AT3G01080.1 50.000 74 37 0 103 176 292 365 5.17e-23 95.9
Msa1385920 AT3G01080.1 51.613 62 29 1 117 178 167 227 6.99e-14 69.7
Msa1385920 AT3G01080.2 50.000 74 37 0 103 176 330 403 6.16e-23 95.9
Msa1385920 AT3G01080.2 51.613 62 29 1 117 178 205 265 7.74e-14 69.7
Msa1385920 AT4G26440.1 53.333 75 35 0 103 177 358 432 6.19e-22 93.2
Msa1385920 AT4G26440.1 53.333 60 27 1 117 176 178 236 2.07e-13 68.6
Msa1385920 AT1G69310.3 52.055 73 31 1 103 175 133 201 9.21e-21 87.8
Msa1385920 AT4G04450.2 48.649 74 37 1 104 176 185 258 3.12e-19 85.1
Msa1385920 AT1G68150.1 48.052 77 39 1 104 179 222 298 3.32e-19 84.7
Msa1385920 AT4G22070.4 50.000 74 36 1 104 176 284 357 6.39e-19 84.7
Msa1385920 AT4G22070.3 50.000 74 36 1 104 176 284 357 6.39e-19 84.7
Msa1385920 AT4G22070.2 50.000 74 36 1 104 176 284 357 6.39e-19 84.7
Msa1385920 AT4G22070.1 50.000 74 36 1 104 176 284 357 6.39e-19 84.7
Msa1385920 AT1G62300.1 50.000 74 36 1 104 176 299 372 8.98e-19 84.3
Msa1385920 AT4G04450.1 48.649 74 37 1 104 176 279 352 9.11e-19 84.0
Msa1385920 AT4G30935.1 43.210 81 44 1 115 193 329 409 1.09e-18 83.6
Msa1385920 AT5G43290.1 41.071 112 50 4 92 193 80 185 4.79e-18 80.5
Msa1385920 AT1G55600.1 40.426 94 47 1 83 176 282 366 4.94e-18 82.0
Msa1385920 AT4G01720.1 43.750 96 49 2 86 176 204 299 8.85e-18 81.3
Msa1385920 AT5G15130.2 45.455 77 41 1 104 179 172 248 1.69e-17 80.5
Msa1385920 AT5G15130.1 45.455 77 41 1 104 179 214 290 2.03e-17 80.1
Msa1385920 AT2G34830.1 37.037 108 63 4 71 176 171 275 2.71e-17 79.7
Msa1385920 AT2G34830.2 37.037 108 63 4 71 176 180 284 2.78e-17 79.7
Msa1385920 AT2G25000.2 45.833 72 38 1 116 186 102 173 2.86e-17 77.4
Msa1385920 AT2G25000.4 45.833 72 38 1 116 186 102 173 2.86e-17 77.4
Msa1385920 AT1G18860.1 47.297 74 38 1 104 176 226 299 3.90e-17 79.3
Msa1385920 AT2G25000.3 45.833 72 38 1 116 186 124 195 4.42e-17 77.4
Msa1385920 AT2G23320.1 42.353 85 45 2 90 173 216 297 5.53e-17 77.8
Msa1385920 AT2G25000.1 45.833 72 38 1 116 186 145 216 6.26e-17 77.4
Msa1385920 AT4G31800.2 50.000 62 30 1 116 176 110 171 8.50e-17 76.6
Msa1385920 AT4G24240.1 45.977 87 40 2 88 173 258 338 9.94e-17 77.8
Msa1385920 AT1G80840.1 36.538 104 59 3 76 176 107 206 1.11e-16 77.0
Msa1385920 AT4G31800.1 50.000 62 30 1 116 176 175 236 1.61e-16 76.6
Msa1385920 AT1G29280.1 40.000 95 54 2 88 179 43 137 2.76e-16 75.5
Msa1385920 AT2G37260.3 36.893 103 55 2 71 173 233 325 1.02e-15 74.7
Msa1385920 AT2G37260.3 52.542 59 27 1 118 176 86 143 3.92e-12 64.7
Msa1385920 AT2G37260.2 36.893 103 55 2 71 173 231 323 1.09e-15 74.7
Msa1385920 AT2G37260.2 52.542 59 27 1 118 176 84 141 4.32e-12 64.3
Msa1385920 AT3G58710.2 39.785 93 55 1 88 179 41 133 1.22e-15 73.6
Msa1385920 AT1G30650.1 33.913 115 70 4 64 176 167 277 1.27e-15 74.7
Msa1385920 AT2G37260.1 36.893 103 55 2 71 173 313 405 1.30e-15 74.7
Msa1385920 AT2G37260.1 52.542 59 27 1 118 176 166 223 2.91e-12 65.1
Msa1385920 AT2G24570.1 39.362 94 55 2 92 183 218 311 1.30e-15 74.3
Msa1385920 AT2G30590.1 45.000 80 43 1 95 173 291 370 1.56e-15 74.3
Msa1385920 AT4G01250.1 48.387 62 31 1 118 178 129 190 3.63e-15 72.8
Msa1385920 AT5G28650.1 52.459 61 28 1 114 173 259 319 4.09e-15 72.8
Msa1385920 AT3G58710.1 39.130 92 55 1 89 179 43 134 5.37e-15 72.0
Msa1385920 AT4G31550.1 39.759 83 49 1 92 173 221 303 6.28e-15 72.4
Msa1385920 AT4G31550.2 41.250 80 46 1 95 173 223 302 7.67e-15 72.0
Msa1385920 AT3G04670.1 50.820 61 29 1 114 173 259 319 2.09e-14 70.9
Msa1385920 AT5G52830.1 46.269 67 35 1 111 176 159 225 3.15e-14 70.5
Msa1385920 AT3G01080.3 51.613 62 29 1 117 178 205 265 5.90e-14 69.7
Msa1385920 AT4G23550.1 46.032 63 33 1 115 176 138 200 7.63e-14 69.3
Msa1385920 AT5G45050.4 50.000 60 29 1 118 176 1042 1101 4.17e-13 67.8
Msa1385920 AT5G45050.1 50.000 60 29 1 118 176 1181 1240 4.47e-13 67.8
Msa1385920 AT5G45050.2 50.000 60 29 1 118 176 1153 1212 4.63e-13 67.8
Msa1385920 AT1G69810.2 40.698 86 49 2 93 176 121 206 6.52e-13 66.6
Msa1385920 AT1G69810.1 45.455 66 34 2 116 179 202 267 1.03e-12 66.2
Msa1385920 AT5G24110.1 42.373 59 31 1 116 171 112 170 5.07e-12 63.9
Msa1385920 AT2G40740.1 26.437 174 113 5 25 186 78 248 1.19e-11 62.8
Msa1385920 AT2G40740.3 26.437 174 113 5 25 186 87 257 1.66e-11 62.4
Msa1385920 AT1G66560.1 44.828 58 29 1 117 171 103 160 4.95e-11 60.5
Msa1385920 AT4G12020.2 45.902 61 32 1 116 176 467 526 7.54e-11 61.2
Msa1385920 AT4G12020.10 45.902 61 32 1 116 176 467 526 7.75e-11 61.2
Msa1385920 AT4G12020.4 45.902 61 32 1 116 176 467 526 7.76e-11 61.2
Msa1385920 AT4G12020.3 45.902 61 32 1 116 176 467 526 7.83e-11 61.2
Msa1385920 AT4G12020.7 45.902 61 32 1 116 176 467 526 8.41e-11 61.2
Msa1385920 AT4G12020.5 45.902 61 32 1 116 176 400 459 8.42e-11 61.2
Msa1385920 AT4G12020.1 45.902 61 32 1 116 176 467 526 8.49e-11 61.2
Msa1385920 AT4G12020.9 45.902 61 32 1 116 176 467 526 8.49e-11 61.2
Msa1385920 AT4G12020.6 45.902 61 32 1 116 176 467 526 8.56e-11 61.2
Msa1385920 AT4G12020.8 45.902 61 32 1 116 176 467 526 8.56e-11 61.2

Find 72 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGATAAGGGTTAGAATT+AGG 0.170308 tig0020778:-111794 None:intergenic
ATTGCGAGGGCCATGTATTT+TGG 0.189109 tig0020778:+111767 None:intergenic
CATTAATTTATCTGATTATC+TGG 0.206659 tig0020778:+111853 Msa1385920:CDS
ATGATTAACTTAGCATTAAT+TGG 0.209206 tig0020778:-113527 None:intergenic
GAGATCGCAGCTTGAGATTA+TGG 0.274833 tig0020778:+112205 Msa1385920:CDS
TAACATTTCCCTTGAATAAC+AGG 0.298278 tig0020778:-113644 None:intergenic
ACTGGTTAAGGATATGAAAA+AGG 0.325451 tig0020778:+113684 Msa1385920:three_prime_UTR
TGTGATAAGGGTTAGAATTA+GGG 0.327958 tig0020778:-111793 None:intergenic
ATACTGCACCCCAGTGTCTT+TGG 0.341378 tig0020778:+113456 Msa1385920:CDS
GATATATTATTATTGTGATA+AGG 0.354376 tig0020778:-111806 None:intergenic
CATCATGTTATTGTTGTTGT+TGG 0.361835 tig0020778:-112011 None:intergenic
CTCGTTCTAAACGTCACTCT+TGG 0.361959 tig0020778:-112185 None:intergenic
GGATTCAAATGGAGGAAGTA+TGG 0.376820 tig0020778:+112233 Msa1385920:CDS
TGGGGTGCAGTATGAATTGC+AGG 0.381764 tig0020778:-113446 None:intergenic
GGCTATCTTCCTGTTATTCA+AGG 0.382058 tig0020778:+113635 Msa1385920:three_prime_UTR
ATATATTATTATTGTGATAA+GGG 0.384981 tig0020778:-111805 None:intergenic
ATCGAGTTGGTAAGTTGTAT+TGG 0.419679 tig0020778:+113614 Msa1385920:three_prime_UTR
TTTATCTGATTATCTGGTGC+TGG 0.421050 tig0020778:+111859 Msa1385920:CDS
GTTATTGTTGTTGTTGGTAG+AGG 0.421215 tig0020778:-112005 None:intergenic
GATATTAATGTCATCAATCA+AGG 0.432364 tig0020778:+111959 Msa1385920:CDS
GAAATGTTAACCGGTGCCCC+CGG 0.456639 tig0020778:+113658 Msa1385920:three_prime_UTR
CAGCTTGAGATTATGGATGA+TGG 0.458517 tig0020778:+112212 Msa1385920:CDS
AGAAAAGGGTGGAAAGGGAT+AGG 0.462080 tig0020778:+113368 Msa1385920:CDS
AAGGATGTGGTGTGAAGAAA+AGG 0.469530 tig0020778:+113353 Msa1385920:CDS
TCGTTCTAAACGTCACTCTT+GGG 0.470165 tig0020778:-112184 None:intergenic
GAAAAGGGTGGAAAGGGATA+GGG 0.470665 tig0020778:+113369 Msa1385920:CDS
ATTGATGACATTAATATCAA+TGG 0.474010 tig0020778:-111954 None:intergenic
ATATCCTTAACCAGTGCCCC+GGG 0.474150 tig0020778:-113676 None:intergenic
TATTCAAGGGAAATGTTAAC+CGG 0.474812 tig0020778:+113649 Msa1385920:three_prime_UTR
GTGCTGCTGTGGCCATTCAT+TGG 0.482833 tig0020778:-113485 None:intergenic
ACGTAAAAGCAGGGAGATGA+AGG 0.487697 tig0020778:+112142 Msa1385920:CDS
TTAATGCTAAGTTAATCATA+TGG 0.493411 tig0020778:+113531 Msa1385920:exon
TTGGAAGAAGAGGTTGCAGA+AGG 0.494174 tig0020778:-113508 None:intergenic
CTTTGGTGTATTCCAATGAA+TGG 0.497333 tig0020778:+113473 Msa1385920:CDS
TGTGAAGAAAAGGGTGGAAA+GGG 0.502030 tig0020778:+113363 Msa1385920:CDS
CATATCCTTAACCAGTGCCC+CGG 0.511133 tig0020778:-113677 None:intergenic
AGGAACTACTACAAGTGTTC+AGG 0.517573 tig0020778:+113328 Msa1385920:intron
AAGAGTAATTACCTTGGGTA+TGG 0.521127 tig0020778:-112278 None:intergenic
TTGACAGGAAACGTAAAAGC+AGG 0.524253 tig0020778:+112132 Msa1385920:intron
TTATGGATGATGGATTCAAA+TGG 0.530112 tig0020778:+112222 Msa1385920:CDS
TTAGCATTAATTGGAAGAAG+AGG 0.534274 tig0020778:-113518 None:intergenic
TATGTGCTAACAAGCTATGA+AGG 0.537065 tig0020778:+113403 Msa1385920:CDS
GACATTAATATCAATGGTGG+TGG 0.540399 tig0020778:-111948 None:intergenic
ATTAGGGTTTCCAAAATACA+TGG 0.543667 tig0020778:-111777 None:intergenic
GCTATCTTCCTGTTATTCAA+GGG 0.544298 tig0020778:+113636 Msa1385920:three_prime_UTR
TTGGAATACACCAAAGACAC+TGG 0.546851 tig0020778:-113466 None:intergenic
TACTACAAGTGTTCAGGTGA+AGG 0.550615 tig0020778:+113334 Msa1385920:CDS
AAATCAGACGAGGAAGGAGG+AGG 0.561547 tig0020778:-111830 None:intergenic
GTGTGAAGAAAAGGGTGGAA+AGG 0.565384 tig0020778:+113362 Msa1385920:CDS
GAATGTTGGTCACAAAGTAC+AGG 0.570695 tig0020778:+111896 Msa1385920:CDS
GTTGCAGAAGGGTGCTGCTG+TGG 0.575437 tig0020778:-113496 None:intergenic
CTAGGAAGGTCTGATCGAGT+TGG 0.594851 tig0020778:+113601 Msa1385920:three_prime_UTR
TGGATGATGGATTCAAATGG+AGG 0.596809 tig0020778:+112225 Msa1385920:CDS
TGGAATACACCAAAGACACT+GGG 0.603339 tig0020778:-113465 None:intergenic
TTAATATCAATGGTGGTGGA+AGG 0.605778 tig0020778:-111944 None:intergenic
ATGATGAACATCAAGAATGT+TGG 0.619679 tig0020778:+111882 Msa1385920:CDS
AAGTGTTCAGGTGAAGGATG+TGG 0.620118 tig0020778:+113340 Msa1385920:CDS
GGGGTGCAGTATGAATTGCA+GGG 0.623339 tig0020778:-113445 None:intergenic
AACTGAATCATCAGACAACA+AGG 0.625525 tig0020778:+111919 Msa1385920:CDS
AGGATGTGGTGTGAAGAAAA+GGG 0.633271 tig0020778:+113354 Msa1385920:CDS
TGGAAGAAGAGGTTGCAGAA+GGG 0.634753 tig0020778:-113507 None:intergenic
ATGAAATCAGACGAGGAAGG+AGG 0.639707 tig0020778:-111833 None:intergenic
TCAAGAATAGTCCATACCCA+AGG 0.659061 tig0020778:+112267 Msa1385920:CDS
ATCCTTAACCAGTGCCCCGG+GGG 0.661453 tig0020778:-113674 None:intergenic
GGGTGCAGTATGAATTGCAG+GGG 0.665109 tig0020778:-113444 None:intergenic
ATGTGGTGTGAAGAAAAGGG+TGG 0.669156 tig0020778:+113357 Msa1385920:CDS
TGACAGGAAACGTAAAAGCA+GGG 0.673462 tig0020778:+112133 Msa1385920:intron
GATGACATTAATATCAATGG+TGG 0.679350 tig0020778:-111951 None:intergenic
TTAATGAAATCAGACGAGGA+AGG 0.681005 tig0020778:-111836 None:intergenic
TAAATTAATGAAATCAGACG+AGG 0.714233 tig0020778:-111840 None:intergenic
TATCCTTAACCAGTGCCCCG+GGG 0.718949 tig0020778:-113675 None:intergenic
GGAATACACCAAAGACACTG+GGG 0.775844 tig0020778:-113464 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTATTATTGTGATAA+GGG - tig0020778:111808-111827 None:intergenic 10.0%
!!! ATAATAATGTATGTATATTT+TGG + tig0020778:112099-112118 Msa1385920:intron 10.0%
!! AGTAAATTTGTATAAAAAAA+TGG - tig0020778:112567-112586 None:intergenic 10.0%
!! ATATATTATTATTGTGATAA+GGG - tig0020778:111808-111827 None:intergenic 10.0%
!!! ATAATAATGTATGTATATTT+TGG + tig0020778:112099-112118 Msa1385920:intron 10.0%
!! AGTAAATTTGTATAAAAAAA+TGG - tig0020778:112567-112586 None:intergenic 10.0%
!! GATATATTATTATTGTGATA+AGG - tig0020778:111809-111828 None:intergenic 15.0%
!!! CAAAATAACTTTTCTATTTA+TGG - tig0020778:112524-112543 None:intergenic 15.0%
!! GATCATATATATAAATATTG+TGG + tig0020778:112690-112709 Msa1385920:intron 15.0%
!! TCATAATTATAAACTGTATA+CGG + tig0020778:112759-112778 Msa1385920:intron 15.0%
!! TAATTAGCAAACAAATTAAA+TGG + tig0020778:112857-112876 Msa1385920:intron 15.0%
!!! CTTTTTCTTTAAATTATTCT+AGG + tig0020778:113231-113250 Msa1385920:intron 15.0%
!! GATATATTATTATTGTGATA+AGG - tig0020778:111809-111828 None:intergenic 15.0%
!!! CAAAATAACTTTTCTATTTA+TGG - tig0020778:112524-112543 None:intergenic 15.0%
!! GATCATATATATAAATATTG+TGG + tig0020778:112690-112709 Msa1385920:intron 15.0%
!! TCATAATTATAAACTGTATA+CGG + tig0020778:112759-112778 Msa1385920:intron 15.0%
!! TAATTAGCAAACAAATTAAA+TGG + tig0020778:112857-112876 Msa1385920:intron 15.0%
!!! CTTTTTCTTTAAATTATTCT+AGG + tig0020778:113231-113250 Msa1385920:intron 15.0%
!! CATTAATTTATCTGATTATC+TGG + tig0020778:111853-111872 Msa1385920:CDS 20.0%
!!! ATTGATGACATTAATATCAA+TGG - tig0020778:111957-111976 None:intergenic 20.0%
!! AAAAATTAACATCACAAAAG+TGG - tig0020778:112064-112083 None:intergenic 20.0%
!!! TATGTATATTTTGGATTCTT+TGG + tig0020778:112108-112127 Msa1385920:intron 20.0%
!! AACATTATCCTTAACTTAAT+TGG + tig0020778:112626-112645 Msa1385920:intron 20.0%
!! CATATATATAAATATTGTGG+CGG + tig0020778:112693-112712 Msa1385920:intron 20.0%
!! TACATATTGCATATATGATT+GGG - tig0020778:112806-112825 None:intergenic 20.0%
!! TTACATATTGCATATATGAT+TGG - tig0020778:112807-112826 None:intergenic 20.0%
!!! TAATTACACACAAAATTTTC+TGG - tig0020778:113263-113282 None:intergenic 20.0%
!! ATGATTAACTTAGCATTAAT+TGG - tig0020778:113530-113549 None:intergenic 20.0%
!! TTAATGCTAAGTTAATCATA+TGG + tig0020778:113531-113550 Msa1385920:exon 20.0%
!! CATTAATTTATCTGATTATC+TGG + tig0020778:111853-111872 Msa1385920:CDS 20.0%
!!! ATTGATGACATTAATATCAA+TGG - tig0020778:111957-111976 None:intergenic 20.0%
!! AAAAATTAACATCACAAAAG+TGG - tig0020778:112064-112083 None:intergenic 20.0%
!!! TATGTATATTTTGGATTCTT+TGG + tig0020778:112108-112127 Msa1385920:intron 20.0%
!! AACATTATCCTTAACTTAAT+TGG + tig0020778:112626-112645 Msa1385920:intron 20.0%
!! CATATATATAAATATTGTGG+CGG + tig0020778:112693-112712 Msa1385920:intron 20.0%
!! TACATATTGCATATATGATT+GGG - tig0020778:112806-112825 None:intergenic 20.0%
!! TTACATATTGCATATATGAT+TGG - tig0020778:112807-112826 None:intergenic 20.0%
!!! TAATTACACACAAAATTTTC+TGG - tig0020778:113263-113282 None:intergenic 20.0%
!! ATGATTAACTTAGCATTAAT+TGG - tig0020778:113530-113549 None:intergenic 20.0%
!! TTAATGCTAAGTTAATCATA+TGG + tig0020778:113531-113550 Msa1385920:exon 20.0%
! TAAATTAATGAAATCAGACG+AGG - tig0020778:111843-111862 None:intergenic 25.0%
! GATATTAATGTCATCAATCA+AGG + tig0020778:111959-111978 Msa1385920:CDS 25.0%
! TATCCTTAACTTAATTGGAT+AGG + tig0020778:112631-112650 Msa1385920:intron 25.0%
! TTTCCTATCCAATTAAGTTA+AGG - tig0020778:112637-112656 None:intergenic 25.0%
! AACTTAATTGGATAGGAAAT+AGG + tig0020778:112638-112657 Msa1385920:intron 25.0%
! TAAATTAATGAAATCAGACG+AGG - tig0020778:111843-111862 None:intergenic 25.0%
! GATATTAATGTCATCAATCA+AGG + tig0020778:111959-111978 Msa1385920:CDS 25.0%
! TATCCTTAACTTAATTGGAT+AGG + tig0020778:112631-112650 Msa1385920:intron 25.0%
! TTTCCTATCCAATTAAGTTA+AGG - tig0020778:112637-112656 None:intergenic 25.0%
! AACTTAATTGGATAGGAAAT+AGG + tig0020778:112638-112657 Msa1385920:intron 25.0%
TGTGATAAGGGTTAGAATTA+GGG - tig0020778:111796-111815 None:intergenic 30.0%
TTGTGATAAGGGTTAGAATT+AGG - tig0020778:111797-111816 None:intergenic 30.0%
ATGATGAACATCAAGAATGT+TGG + tig0020778:111882-111901 Msa1385920:CDS 30.0%
GATGACATTAATATCAATGG+TGG - tig0020778:111954-111973 None:intergenic 30.0%
! CATCATGTTATTGTTGTTGT+TGG - tig0020778:112014-112033 None:intergenic 30.0%
!! TTATGGATGATGGATTCAAA+TGG + tig0020778:112222-112241 Msa1385920:CDS 30.0%
TGACTAAGAGTAATTACCTT+GGG - tig0020778:112286-112305 None:intergenic 30.0%
TTGACTAAGAGTAATTACCT+TGG - tig0020778:112287-112306 None:intergenic 30.0%
TCTTTAATTCATTGCCTTCT+TGG + tig0020778:112313-112332 Msa1385920:intron 30.0%
CTTGAGTTAAAAGTTGTGTA+CGG - tig0020778:112459-112478 None:intergenic 30.0%
!! GTACACAACTTTTAACTCAA+GGG + tig0020778:112458-112477 Msa1385920:intron 30.0%
ATTGTTTAACCAATGCTCTT+AGG + tig0020778:112594-112613 Msa1385920:intron 30.0%
TAAACTGTATACGGTTTAAG+TGG + tig0020778:112768-112787 Msa1385920:intron 30.0%
!! TGCAAAAGTGCCATTATTTA+CGG - tig0020778:113089-113108 None:intergenic 30.0%
TTAGCATTAATTGGAAGAAG+AGG - tig0020778:113521-113540 None:intergenic 30.0%
!!! TAGCTGCTGCTTTTAATAAA+AGG + tig0020778:113578-113597 Msa1385920:three_prime_UTR 30.0%
! CTTTTAATAAAAGGCTAGGA+AGG + tig0020778:113587-113606 Msa1385920:three_prime_UTR 30.0%
TAACATTTCCCTTGAATAAC+AGG - tig0020778:113647-113666 None:intergenic 30.0%
TATTCAAGGGAAATGTTAAC+CGG + tig0020778:113649-113668 Msa1385920:three_prime_UTR 30.0%
ACTGGTTAAGGATATGAAAA+AGG + tig0020778:113684-113703 Msa1385920:three_prime_UTR 30.0%
TGTGATAAGGGTTAGAATTA+GGG - tig0020778:111796-111815 None:intergenic 30.0%
TTGTGATAAGGGTTAGAATT+AGG - tig0020778:111797-111816 None:intergenic 30.0%
ATGATGAACATCAAGAATGT+TGG + tig0020778:111882-111901 Msa1385920:CDS 30.0%
GATGACATTAATATCAATGG+TGG - tig0020778:111954-111973 None:intergenic 30.0%
! CATCATGTTATTGTTGTTGT+TGG - tig0020778:112014-112033 None:intergenic 30.0%
!! TTATGGATGATGGATTCAAA+TGG + tig0020778:112222-112241 Msa1385920:CDS 30.0%
TGACTAAGAGTAATTACCTT+GGG - tig0020778:112286-112305 None:intergenic 30.0%
TTGACTAAGAGTAATTACCT+TGG - tig0020778:112287-112306 None:intergenic 30.0%
TCTTTAATTCATTGCCTTCT+TGG + tig0020778:112313-112332 Msa1385920:intron 30.0%
CTTGAGTTAAAAGTTGTGTA+CGG - tig0020778:112459-112478 None:intergenic 30.0%
!! GTACACAACTTTTAACTCAA+GGG + tig0020778:112458-112477 Msa1385920:intron 30.0%
ATTGTTTAACCAATGCTCTT+AGG + tig0020778:112594-112613 Msa1385920:intron 30.0%
TAAACTGTATACGGTTTAAG+TGG + tig0020778:112768-112787 Msa1385920:intron 30.0%
!! TGCAAAAGTGCCATTATTTA+CGG - tig0020778:113089-113108 None:intergenic 30.0%
TTAGCATTAATTGGAAGAAG+AGG - tig0020778:113521-113540 None:intergenic 30.0%
!!! TAGCTGCTGCTTTTAATAAA+AGG + tig0020778:113578-113597 Msa1385920:three_prime_UTR 30.0%
! CTTTTAATAAAAGGCTAGGA+AGG + tig0020778:113587-113606 Msa1385920:three_prime_UTR 30.0%
TAACATTTCCCTTGAATAAC+AGG - tig0020778:113647-113666 None:intergenic 30.0%
TATTCAAGGGAAATGTTAAC+CGG + tig0020778:113649-113668 Msa1385920:three_prime_UTR 30.0%
TTAATGAAATCAGACGAGGA+AGG - tig0020778:111839-111858 None:intergenic 35.0%
TTTATCTGATTATCTGGTGC+TGG + tig0020778:111859-111878 Msa1385920:CDS 35.0%
AACTGAATCATCAGACAACA+AGG + tig0020778:111919-111938 Msa1385920:CDS 35.0%
!! TTAATATCAATGGTGGTGGA+AGG - tig0020778:111947-111966 None:intergenic 35.0%
GACATTAATATCAATGGTGG+TGG - tig0020778:111951-111970 None:intergenic 35.0%
! GTTATTGTTGTTGTTGGTAG+AGG - tig0020778:112008-112027 None:intergenic 35.0%
!! TTTGGATTCTTTGGTTTGAC+AGG + tig0020778:112117-112136 Msa1385920:intron 35.0%
AAGAGTAATTACCTTGGGTA+TGG - tig0020778:112281-112300 None:intergenic 35.0%
TGTACGGCATGATATTGATA+GGG - tig0020778:112443-112462 None:intergenic 35.0%
!! CGTACACAACTTTTAACTCA+AGG + tig0020778:112457-112476 Msa1385920:intron 35.0%
TTGGATAGGAAATAGGATAG+TGG + tig0020778:112645-112664 Msa1385920:intron 35.0%
!! TGATATATGCTAGTTGATGG+AGG + tig0020778:112717-112736 Msa1385920:intron 35.0%
!! GATATATGCTAGTTGATGGA+GGG + tig0020778:112718-112737 Msa1385920:intron 35.0%
!! ATATATGCTAGTTGATGGAG+GGG + tig0020778:112719-112738 Msa1385920:intron 35.0%
!! AAAAGTGCCATTATTTACGG+GGG - tig0020778:113086-113105 None:intergenic 35.0%
!! CAAAAGTGCCATTATTTACG+GGG - tig0020778:113087-113106 None:intergenic 35.0%
!! GCAAAAGTGCCATTATTTAC+GGG - tig0020778:113088-113107 None:intergenic 35.0%
TATGTGCTAACAAGCTATGA+AGG + tig0020778:113403-113422 Msa1385920:CDS 35.0%
! CTTTGGTGTATTCCAATGAA+TGG + tig0020778:113473-113492 Msa1385920:CDS 35.0%
!!! GCTGCTTTTAATAAAAGGCT+AGG + tig0020778:113583-113602 Msa1385920:three_prime_UTR 35.0%
!! ATCGAGTTGGTAAGTTGTAT+TGG + tig0020778:113614-113633 Msa1385920:three_prime_UTR 35.0%
GCTATCTTCCTGTTATTCAA+GGG + tig0020778:113636-113655 Msa1385920:three_prime_UTR 35.0%
TTAATGAAATCAGACGAGGA+AGG - tig0020778:111839-111858 None:intergenic 35.0%
TTTATCTGATTATCTGGTGC+TGG + tig0020778:111859-111878 Msa1385920:CDS 35.0%
AACTGAATCATCAGACAACA+AGG + tig0020778:111919-111938 Msa1385920:CDS 35.0%
!! TTAATATCAATGGTGGTGGA+AGG - tig0020778:111947-111966 None:intergenic 35.0%
GACATTAATATCAATGGTGG+TGG - tig0020778:111951-111970 None:intergenic 35.0%
! GTTATTGTTGTTGTTGGTAG+AGG - tig0020778:112008-112027 None:intergenic 35.0%
!! TTTGGATTCTTTGGTTTGAC+AGG + tig0020778:112117-112136 Msa1385920:intron 35.0%
AAGAGTAATTACCTTGGGTA+TGG - tig0020778:112281-112300 None:intergenic 35.0%
TGTACGGCATGATATTGATA+GGG - tig0020778:112443-112462 None:intergenic 35.0%
!! CGTACACAACTTTTAACTCA+AGG + tig0020778:112457-112476 Msa1385920:intron 35.0%
TTGGATAGGAAATAGGATAG+TGG + tig0020778:112645-112664 Msa1385920:intron 35.0%
!! TGATATATGCTAGTTGATGG+AGG + tig0020778:112717-112736 Msa1385920:intron 35.0%
!! GATATATGCTAGTTGATGGA+GGG + tig0020778:112718-112737 Msa1385920:intron 35.0%
!! ATATATGCTAGTTGATGGAG+GGG + tig0020778:112719-112738 Msa1385920:intron 35.0%
!! AAAAGTGCCATTATTTACGG+GGG - tig0020778:113086-113105 None:intergenic 35.0%
!! CAAAAGTGCCATTATTTACG+GGG - tig0020778:113087-113106 None:intergenic 35.0%
!! GCAAAAGTGCCATTATTTAC+GGG - tig0020778:113088-113107 None:intergenic 35.0%
TATGTGCTAACAAGCTATGA+AGG + tig0020778:113403-113422 Msa1385920:CDS 35.0%
! CTTTGGTGTATTCCAATGAA+TGG + tig0020778:113473-113492 Msa1385920:CDS 35.0%
!!! GCTGCTTTTAATAAAAGGCT+AGG + tig0020778:113583-113602 Msa1385920:three_prime_UTR 35.0%
!! ATCGAGTTGGTAAGTTGTAT+TGG + tig0020778:113614-113633 Msa1385920:three_prime_UTR 35.0%
GCTATCTTCCTGTTATTCAA+GGG + tig0020778:113636-113655 Msa1385920:three_prime_UTR 35.0%
GAATGTTGGTCACAAAGTAC+AGG + tig0020778:111896-111915 Msa1385920:CDS 40.0%
TTGACAGGAAACGTAAAAGC+AGG + tig0020778:112132-112151 Msa1385920:intron 40.0%
TGACAGGAAACGTAAAAGCA+GGG + tig0020778:112133-112152 Msa1385920:intron 40.0%
! TCGTTCTAAACGTCACTCTT+GGG - tig0020778:112187-112206 None:intergenic 40.0%
CAGCTTGAGATTATGGATGA+TGG + tig0020778:112212-112231 Msa1385920:CDS 40.0%
!! TGGATGATGGATTCAAATGG+AGG + tig0020778:112225-112244 Msa1385920:CDS 40.0%
GGATTCAAATGGAGGAAGTA+TGG + tig0020778:112233-112252 Msa1385920:CDS 40.0%
TCAAGAATAGTCCATACCCA+AGG + tig0020778:112267-112286 Msa1385920:CDS 40.0%
TATGACGTATGTAGCCAAGA+AGG - tig0020778:112330-112349 None:intergenic 40.0%
GTGTACGGCATGATATTGAT+AGG - tig0020778:112444-112463 None:intergenic 40.0%
! AATCGATGTCCTAAGAGCAT+TGG - tig0020778:112606-112625 None:intergenic 40.0%
! GATAGGAAATAGGATAGTGG+TGG + tig0020778:112648-112667 Msa1385920:intron 40.0%
GGCTGATATATGCTAGTTGA+TGG + tig0020778:112714-112733 Msa1385920:intron 40.0%
!! TATATGCTAGTTGATGGAGG+GGG + tig0020778:112720-112739 Msa1385920:intron 40.0%
TGGTTTCCATTTGTTTGTCC+TGG + tig0020778:112926-112945 Msa1385920:intron 40.0%
TCGATTCCAGGACAAACAAA+TGG - tig0020778:112935-112954 None:intergenic 40.0%
!! CTACTACTTTTCTCGATTCC+AGG - tig0020778:112947-112966 None:intergenic 40.0%
AAAGATGTGCACATACAAGC+AGG + tig0020778:113308-113327 Msa1385920:intron 40.0%
AGGAACTACTACAAGTGTTC+AGG + tig0020778:113328-113347 Msa1385920:intron 40.0%
TACTACAAGTGTTCAGGTGA+AGG + tig0020778:113334-113353 Msa1385920:CDS 40.0%
AAGGATGTGGTGTGAAGAAA+AGG + tig0020778:113353-113372 Msa1385920:CDS 40.0%
AGGATGTGGTGTGAAGAAAA+GGG + tig0020778:113354-113373 Msa1385920:CDS 40.0%
TGTGAAGAAAAGGGTGGAAA+GGG + tig0020778:113363-113382 Msa1385920:CDS 40.0%
TGGAATACACCAAAGACACT+GGG - tig0020778:113468-113487 None:intergenic 40.0%
TTGGAATACACCAAAGACAC+TGG - tig0020778:113469-113488 None:intergenic 40.0%
GGCTATCTTCCTGTTATTCA+AGG + tig0020778:113635-113654 Msa1385920:three_prime_UTR 40.0%
GAATGTTGGTCACAAAGTAC+AGG + tig0020778:111896-111915 Msa1385920:CDS 40.0%
TTGACAGGAAACGTAAAAGC+AGG + tig0020778:112132-112151 Msa1385920:intron 40.0%
TGACAGGAAACGTAAAAGCA+GGG + tig0020778:112133-112152 Msa1385920:intron 40.0%
! TCGTTCTAAACGTCACTCTT+GGG - tig0020778:112187-112206 None:intergenic 40.0%
CAGCTTGAGATTATGGATGA+TGG + tig0020778:112212-112231 Msa1385920:CDS 40.0%
!! TGGATGATGGATTCAAATGG+AGG + tig0020778:112225-112244 Msa1385920:CDS 40.0%
GGATTCAAATGGAGGAAGTA+TGG + tig0020778:112233-112252 Msa1385920:CDS 40.0%
TCAAGAATAGTCCATACCCA+AGG + tig0020778:112267-112286 Msa1385920:CDS 40.0%
TATGACGTATGTAGCCAAGA+AGG - tig0020778:112330-112349 None:intergenic 40.0%
GTGTACGGCATGATATTGAT+AGG - tig0020778:112444-112463 None:intergenic 40.0%
! AATCGATGTCCTAAGAGCAT+TGG - tig0020778:112606-112625 None:intergenic 40.0%
! GATAGGAAATAGGATAGTGG+TGG + tig0020778:112648-112667 Msa1385920:intron 40.0%
GGCTGATATATGCTAGTTGA+TGG + tig0020778:112714-112733 Msa1385920:intron 40.0%
!! TATATGCTAGTTGATGGAGG+GGG + tig0020778:112720-112739 Msa1385920:intron 40.0%
TGGTTTCCATTTGTTTGTCC+TGG + tig0020778:112926-112945 Msa1385920:intron 40.0%
TCGATTCCAGGACAAACAAA+TGG - tig0020778:112935-112954 None:intergenic 40.0%
!! CTACTACTTTTCTCGATTCC+AGG - tig0020778:112947-112966 None:intergenic 40.0%
AAAGATGTGCACATACAAGC+AGG + tig0020778:113308-113327 Msa1385920:intron 40.0%
AGGAACTACTACAAGTGTTC+AGG + tig0020778:113328-113347 Msa1385920:intron 40.0%
TACTACAAGTGTTCAGGTGA+AGG + tig0020778:113334-113353 Msa1385920:CDS 40.0%
AAGGATGTGGTGTGAAGAAA+AGG + tig0020778:113353-113372 Msa1385920:CDS 40.0%
AGGATGTGGTGTGAAGAAAA+GGG + tig0020778:113354-113373 Msa1385920:CDS 40.0%
TGTGAAGAAAAGGGTGGAAA+GGG + tig0020778:113363-113382 Msa1385920:CDS 40.0%
TGGAATACACCAAAGACACT+GGG - tig0020778:113468-113487 None:intergenic 40.0%
TTGGAATACACCAAAGACAC+TGG - tig0020778:113469-113488 None:intergenic 40.0%
GGCTATCTTCCTGTTATTCA+AGG + tig0020778:113635-113654 Msa1385920:three_prime_UTR 40.0%
ATGAAATCAGACGAGGAAGG+AGG - tig0020778:111836-111855 None:intergenic 45.0%
ACGTAAAAGCAGGGAGATGA+AGG + tig0020778:112142-112161 Msa1385920:CDS 45.0%
! CTCGTTCTAAACGTCACTCT+TGG - tig0020778:112188-112207 None:intergenic 45.0%
GAGATCGCAGCTTGAGATTA+TGG + tig0020778:112205-112224 Msa1385920:CDS 45.0%
! AGGAAATAGGATAGTGGTGG+TGG + tig0020778:112651-112670 Msa1385920:intron 45.0%
! GGAAATAGGATAGTGGTGGT+GGG + tig0020778:112652-112671 Msa1385920:intron 45.0%
!! ATATGCTAGTTGATGGAGGG+GGG + tig0020778:112721-112740 Msa1385920:intron 45.0%
ACACGCAAGCTCAACAAGTA+GGG - tig0020778:112899-112918 None:intergenic 45.0%
TACACGCAAGCTCAACAAGT+AGG - tig0020778:112900-112919 None:intergenic 45.0%
TGAGCTTGCGTGTATATGTG+TGG + tig0020778:112906-112925 Msa1385920:intron 45.0%
AGCTAGTCCCCCGTAAATAA+TGG + tig0020778:113076-113095 Msa1385920:intron 45.0%
AAGAGAGAGATTCTGTGCAC+TGG + tig0020778:113151-113170 Msa1385920:intron 45.0%
AGAGAGAGATTCTGTGCACT+GGG + tig0020778:113152-113171 Msa1385920:intron 45.0%
GGACTGTTGTTGATCTCATC+AGG + tig0020778:113173-113192 Msa1385920:intron 45.0%
CTGTTGTTGATCTCATCAGG+TGG + tig0020778:113176-113195 Msa1385920:intron 45.0%
AAGTGTTCAGGTGAAGGATG+TGG + tig0020778:113340-113359 Msa1385920:CDS 45.0%
ATGTGGTGTGAAGAAAAGGG+TGG + tig0020778:113357-113376 Msa1385920:CDS 45.0%
GTGTGAAGAAAAGGGTGGAA+AGG + tig0020778:113362-113381 Msa1385920:CDS 45.0%
AGAAAAGGGTGGAAAGGGAT+AGG + tig0020778:113368-113387 Msa1385920:CDS 45.0%
GAAAAGGGTGGAAAGGGATA+GGG + tig0020778:113369-113388 Msa1385920:CDS 45.0%
GGAATACACCAAAGACACTG+GGG - tig0020778:113467-113486 None:intergenic 45.0%
TGGAAGAAGAGGTTGCAGAA+GGG - tig0020778:113510-113529 None:intergenic 45.0%
TTGGAAGAAGAGGTTGCAGA+AGG - tig0020778:113511-113530 None:intergenic 45.0%
ATGAAATCAGACGAGGAAGG+AGG - tig0020778:111836-111855 None:intergenic 45.0%
ACGTAAAAGCAGGGAGATGA+AGG + tig0020778:112142-112161 Msa1385920:CDS 45.0%
! CTCGTTCTAAACGTCACTCT+TGG - tig0020778:112188-112207 None:intergenic 45.0%
GAGATCGCAGCTTGAGATTA+TGG + tig0020778:112205-112224 Msa1385920:CDS 45.0%
! AGGAAATAGGATAGTGGTGG+TGG + tig0020778:112651-112670 Msa1385920:intron 45.0%
! GGAAATAGGATAGTGGTGGT+GGG + tig0020778:112652-112671 Msa1385920:intron 45.0%
!! ATATGCTAGTTGATGGAGGG+GGG + tig0020778:112721-112740 Msa1385920:intron 45.0%
ACACGCAAGCTCAACAAGTA+GGG - tig0020778:112899-112918 None:intergenic 45.0%
TACACGCAAGCTCAACAAGT+AGG - tig0020778:112900-112919 None:intergenic 45.0%
TGAGCTTGCGTGTATATGTG+TGG + tig0020778:112906-112925 Msa1385920:intron 45.0%
AGCTAGTCCCCCGTAAATAA+TGG + tig0020778:113076-113095 Msa1385920:intron 45.0%
AAGAGAGAGATTCTGTGCAC+TGG + tig0020778:113151-113170 Msa1385920:intron 45.0%
AGAGAGAGATTCTGTGCACT+GGG + tig0020778:113152-113171 Msa1385920:intron 45.0%
GGACTGTTGTTGATCTCATC+AGG + tig0020778:113173-113192 Msa1385920:intron 45.0%
CTGTTGTTGATCTCATCAGG+TGG + tig0020778:113176-113195 Msa1385920:intron 45.0%
AAGTGTTCAGGTGAAGGATG+TGG + tig0020778:113340-113359 Msa1385920:CDS 45.0%
ATGTGGTGTGAAGAAAAGGG+TGG + tig0020778:113357-113376 Msa1385920:CDS 45.0%
GTGTGAAGAAAAGGGTGGAA+AGG + tig0020778:113362-113381 Msa1385920:CDS 45.0%
AGAAAAGGGTGGAAAGGGAT+AGG + tig0020778:113368-113387 Msa1385920:CDS 45.0%
GAAAAGGGTGGAAAGGGATA+GGG + tig0020778:113369-113388 Msa1385920:CDS 45.0%
GGAATACACCAAAGACACTG+GGG - tig0020778:113467-113486 None:intergenic 45.0%
TGGAAGAAGAGGTTGCAGAA+GGG - tig0020778:113510-113529 None:intergenic 45.0%
TTGGAAGAAGAGGTTGCAGA+AGG - tig0020778:113511-113530 None:intergenic 45.0%
AAATCAGACGAGGAAGGAGG+AGG - tig0020778:111833-111852 None:intergenic 50.0%
!! ATAGTGGTGGTGGGTCTGAT+TGG + tig0020778:112661-112680 Msa1385920:intron 50.0%
!! GGACTAGCTAGCTAGCAAGT+GGG - tig0020778:113065-113084 None:intergenic 50.0%
GGGTGCAGTATGAATTGCAG+GGG - tig0020778:113447-113466 None:intergenic 50.0%
GGGGTGCAGTATGAATTGCA+GGG - tig0020778:113448-113467 None:intergenic 50.0%
TGGGGTGCAGTATGAATTGC+AGG - tig0020778:113449-113468 None:intergenic 50.0%
ATACTGCACCCCAGTGTCTT+TGG + tig0020778:113456-113475 Msa1385920:CDS 50.0%
CTAGGAAGGTCTGATCGAGT+TGG + tig0020778:113601-113620 Msa1385920:three_prime_UTR 50.0%
ATATCCTTAACCAGTGCCCC+GGG - tig0020778:113679-113698 None:intergenic 50.0%
CATATCCTTAACCAGTGCCC+CGG - tig0020778:113680-113699 None:intergenic 50.0%
AAATCAGACGAGGAAGGAGG+AGG - tig0020778:111833-111852 None:intergenic 50.0%
!! ATAGTGGTGGTGGGTCTGAT+TGG + tig0020778:112661-112680 Msa1385920:intron 50.0%
!! GGACTAGCTAGCTAGCAAGT+GGG - tig0020778:113065-113084 None:intergenic 50.0%
GGGTGCAGTATGAATTGCAG+GGG - tig0020778:113447-113466 None:intergenic 50.0%
GGGGTGCAGTATGAATTGCA+GGG - tig0020778:113448-113467 None:intergenic 50.0%
TGGGGTGCAGTATGAATTGC+AGG - tig0020778:113449-113468 None:intergenic 50.0%
ATACTGCACCCCAGTGTCTT+TGG + tig0020778:113456-113475 Msa1385920:CDS 50.0%
CTAGGAAGGTCTGATCGAGT+TGG + tig0020778:113601-113620 Msa1385920:three_prime_UTR 50.0%
ATATCCTTAACCAGTGCCCC+GGG - tig0020778:113679-113698 None:intergenic 50.0%
CATATCCTTAACCAGTGCCC+CGG - tig0020778:113680-113699 None:intergenic 50.0%
!! GGGACTAGCTAGCTAGCAAG+TGG - tig0020778:113066-113085 None:intergenic 55.0%
! GTGCTGCTGTGGCCATTCAT+TGG - tig0020778:113488-113507 None:intergenic 55.0%
GAAATGTTAACCGGTGCCCC+CGG + tig0020778:113658-113677 Msa1385920:three_prime_UTR 55.0%
AAATGTTAACCGGTGCCCCC+GGG + tig0020778:113659-113678 Msa1385920:three_prime_UTR 55.0%
TATCCTTAACCAGTGCCCCG+GGG - tig0020778:113678-113697 None:intergenic 55.0%
!! GGGACTAGCTAGCTAGCAAG+TGG - tig0020778:113066-113085 None:intergenic 55.0%
! GTGCTGCTGTGGCCATTCAT+TGG - tig0020778:113488-113507 None:intergenic 55.0%
GAAATGTTAACCGGTGCCCC+CGG + tig0020778:113658-113677 Msa1385920:three_prime_UTR 55.0%
AAATGTTAACCGGTGCCCCC+GGG + tig0020778:113659-113678 Msa1385920:three_prime_UTR 55.0%
TATCCTTAACCAGTGCCCCG+GGG - tig0020778:113678-113697 None:intergenic 55.0%
!! GTTGCAGAAGGGTGCTGCTG+TGG - tig0020778:113499-113518 None:intergenic 60.0%
AATGTTAACCGGTGCCCCCG+GGG + tig0020778:113660-113679 Msa1385920:three_prime_UTR 60.0%
ATCCTTAACCAGTGCCCCGG+GGG - tig0020778:113677-113696 None:intergenic 60.0%
!! GTTGCAGAAGGGTGCTGCTG+TGG - tig0020778:113499-113518 None:intergenic 60.0%
AATGTTAACCGGTGCCCCCG+GGG + tig0020778:113660-113679 Msa1385920:three_prime_UTR 60.0%
ATCCTTAACCAGTGCCCCGG+GGG - tig0020778:113677-113696 None:intergenic 60.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + tig0020778:113672-113691 Msa1385920:three_prime_UTR 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + tig0020778:113672-113691 Msa1385920:three_prime_UTR 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG - tig0020778:113671-113690 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+CGG - tig0020778:113671-113690 None:intergenic 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG + tig0020778:113666-113685 Msa1385920:three_prime_UTR 80.0%
! AACCGGTGCCCCCGGGGCAC+TGG + tig0020778:113666-113685 Msa1385920:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
tig0020778 gene 111779 113706 111779 ID=Msa1385920;Name=Msa1385920
tig0020778 mRNA 111779 113706 111779 ID=Msa1385920-mRNA-1;Parent=Msa1385920;Name=Msa1385920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|172|204
tig0020778 exon 111779 112038 111779 ID=Msa1385920-mRNA-1:exon:9847;Parent=Msa1385920-mRNA-1
tig0020778 exon 112139 112288 112139 ID=Msa1385920-mRNA-1:exon:9848;Parent=Msa1385920-mRNA-1
tig0020778 exon 113330 113706 113330 ID=Msa1385920-mRNA-1:exon:9849;Parent=Msa1385920-mRNA-1
tig0020778 CDS 111779 112038 111779 ID=Msa1385920-mRNA-1:cds;Parent=Msa1385920-mRNA-1
tig0020778 CDS 112139 112288 112139 ID=Msa1385920-mRNA-1:cds;Parent=Msa1385920-mRNA-1
tig0020778 CDS 113330 113534 113330 ID=Msa1385920-mRNA-1:cds;Parent=Msa1385920-mRNA-1
tig0020778 three_prime_UTR 113535 113706 113535 ID=Msa1385920-mRNA-1:three_prime_utr;Parent=Msa1385920-mRNA-1
Gene Sequence

>Msa1385920

ATGTATTTTGGAAACCCTAATTCTAACCCTTATCACAATAATAATATATCTCCTCCTCCTTCCTCGTCTGATTTCATTAATTTATCTGATTATCTGGTGCTGGATGATGAACATCAAGAATGTTGGTCACAAAGTACAGGAACTGAATCATCAGACAACAAGGCACCTTCCACCACCATTGATATTAATGTCATCAATCAAGGATTAATTTGTGATGAAATTGAAACCTCTACCAACAACAACAATAACATGATGCAAGTGAAACGTAAAAGCAGGGAGATGAAGGAAAATACAGTAGACGTGAGCCCAAGAGTGACGTTTAGAACGAGATCGCAGCTTGAGATTATGGATGATGGATTCAAATGGAGGAAGTATGGAAAGAAGTCTGTCAAGAATAGTCCATACCCAAGGAACTACTACAAGTGTTCAGGTGAAGGATGTGGTGTGAAGAAAAGGGTGGAAAGGGATAGGGAAGATTCAAGCTATGTGCTAACAAGCTATGAAGGTGTTCACAATCATGAAAGCCCCTGCAATTCATACTGCACCCCAGTGTCTTTGGTGTATTCCAATGAATGGCCACAGCAGCACCCTTCTGCAACCTCTTCTTCCAATTAA
Protein sequence

>Msa1385920

MYFGNPNSNPYHNNNISPPPSSSDFINLSDYLVLDDEHQECWSQSTGTESSDNKAPSTTIDINVINQGLICDEIETSTNNNNNMMQVKRKSREMKENTVDVSPRVTFRTRSQLEIMDDGFKWRKYGKKSVKNSPYPRNYYKCSGEGCGVKKRVERDREDSSYVLTSYEGVHNHESPCNSYCTPVSLVYSNEWPQQHPSATSSSN*