AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473470 MtrunA17_Chr3g0129321 93.301 209 7 3 1 208 3 205 9.69e-139 386
Msa0473470 MtrunA17_Chr8g0383251 51.795 195 73 6 2 191 4 182 1.35e-57 180
Msa0473470 MtrunA17_Chr1g0150801 45.763 177 69 6 9 177 5 162 1.57e-37 128
Msa0473470 MtrunA17_Chr2g0294231 59.740 77 31 0 103 179 189 265 2.31e-29 112
Msa0473470 MtrunA17_Chr4g0068541 50.000 102 51 0 104 205 195 296 1.22e-28 110
Msa0473470 MtrunA17_Chr8g0335811 54.255 94 33 2 85 178 131 214 3.51e-28 105
Msa0473470 MtrunA17_Chr5g0443131 57.333 75 32 0 103 177 143 217 7.26e-28 107
Msa0473470 MtrunA17_Chr4g0051881 57.333 75 32 0 103 177 164 238 1.78e-27 106
Msa0473470 MtrunA17_Chr1g0194481 50.000 94 44 1 86 179 130 220 6.96e-27 104
Msa0473470 MtrunA17_Chr7g0224801 57.353 68 29 0 106 173 82 149 1.30e-26 100
Msa0473470 MtrunA17_Chr3g0079691 36.054 147 85 2 49 195 436 573 9.59e-26 103
Msa0473470 MtrunA17_Chr3g0079691 39.423 104 59 2 73 176 239 338 1.96e-14 71.2
Msa0473470 MtrunA17_Chr7g0270191 39.823 113 67 1 72 184 101 212 1.34e-25 100
Msa0473470 MtrunA17_Chr7g0248721 48.980 98 45 3 80 177 106 198 1.63e-25 98.6
Msa0473470 MtrunA17_Chr5g0418781 45.192 104 56 1 72 175 80 182 1.68e-25 100
Msa0473470 MtrunA17_Chr8g0386241 55.714 70 31 0 104 173 90 159 2.52e-25 97.4
Msa0473470 MtrunA17_Chr7g0218081 52.000 75 36 0 103 177 396 470 3.04e-25 102
Msa0473470 MtrunA17_Chr7g0218081 56.667 60 25 1 117 176 228 286 3.56e-15 73.6
Msa0473470 MtrunA17_Chr7g0249301 53.947 76 35 0 102 177 277 352 5.81e-25 100
Msa0473470 MtrunA17_Chr7g0249301 50.820 61 29 1 116 176 61 120 3.72e-13 67.4
Msa0473470 MtrunA17_Chr7g0249311 56.000 75 33 0 103 177 378 452 5.86e-25 101
Msa0473470 MtrunA17_Chr7g0249311 52.381 63 29 1 117 179 179 240 4.23e-14 70.5
Msa0473470 MtrunA17_Chr5g0445311 45.833 96 44 1 90 177 329 424 6.90e-25 101
Msa0473470 MtrunA17_Chr5g0445311 48.333 60 30 1 117 176 200 258 4.59e-12 64.3
Msa0473470 MtrunA17_Chr3g0129361 56.579 76 32 1 103 178 130 204 7.12e-25 97.1
Msa0473470 MtrunA17_Chr5g0418191 52.000 75 36 0 103 177 306 380 7.58e-25 100
Msa0473470 MtrunA17_Chr5g0418191 51.667 60 28 1 117 176 151 209 2.29e-13 68.2
Msa0473470 MtrunA17_Chr7g0243891 43.750 112 57 1 66 177 329 434 1.92e-24 100
Msa0473470 MtrunA17_Chr7g0243891 42.697 89 47 2 117 202 216 303 8.03e-14 69.3
Msa0473470 MtrunA17_Chr4g0004911 54.667 75 34 0 103 177 322 396 3.23e-24 99.4
Msa0473470 MtrunA17_Chr4g0004911 49.254 67 34 0 110 176 177 243 2.06e-15 73.9
Msa0473470 MtrunA17_Chr4g0042831 52.000 75 36 0 103 177 264 338 5.35e-24 97.8
Msa0473470 MtrunA17_Chr4g0042831 35.556 135 65 3 48 182 98 210 6.78e-15 72.4
Msa0473470 MtrunA17_Chr3g0101131 54.054 74 34 0 103 176 401 474 8.21e-24 98.6
Msa0473470 MtrunA17_Chr3g0101131 48.333 60 30 1 117 176 243 301 6.63e-12 63.9
Msa0473470 MtrunA17_Chr8g0383351 57.143 77 31 2 103 178 145 220 9.06e-24 94.7
Msa0473470 MtrunA17_Chr3g0106491 53.333 75 35 0 103 177 351 425 2.97e-23 96.7
Msa0473470 MtrunA17_Chr3g0106491 44.000 75 37 2 107 177 184 257 2.61e-13 67.8
Msa0473470 MtrunA17_Chr5g0432161 45.833 96 46 1 82 177 392 481 1.03e-22 95.1
Msa0473470 MtrunA17_Chr5g0432161 51.667 60 28 1 117 176 244 302 1.22e-12 66.2
Msa0473470 MtrunA17_Chr6g0485431 36.296 135 76 4 50 176 82 214 2.00e-22 93.2
Msa0473470 MtrunA17_Chr7g0263531 45.263 95 46 1 88 176 326 420 3.38e-22 93.2
Msa0473470 MtrunA17_Chr7g0263531 54.237 59 26 1 118 176 190 247 1.33e-13 68.6
Msa0473470 MtrunA17_Chr7g0270831 45.055 91 45 2 91 176 186 276 7.48e-21 89.4
Msa0473470 MtrunA17_Chr5g0447701 52.055 73 35 0 104 176 239 311 1.11e-20 88.6
Msa0473470 MtrunA17_Chr5g0447701 44.444 63 34 1 114 176 89 150 9.08e-11 60.5
Msa0473470 MtrunA17_Chr3g0099641 50.000 74 36 1 104 176 238 311 7.34e-20 86.7
Msa0473470 MtrunA17_Chr2g0302391 51.351 74 35 1 104 176 198 271 9.15e-20 86.3
Msa0473470 MtrunA17_Chr4g0075201 48.649 74 37 1 104 176 254 327 1.24e-19 86.3
Msa0473470 MtrunA17_Chr7g0238921 43.956 91 45 1 117 207 124 208 1.45e-19 84.7
Msa0473470 MtrunA17_Chr2g0288871 48.649 74 37 1 104 176 292 365 1.62e-19 85.9
Msa0473470 MtrunA17_Chr1g0189391 49.333 75 37 1 100 173 80 154 2.93e-19 84.3
Msa0473470 MtrunA17_Chr4g0074001 44.000 75 42 0 103 177 345 419 3.23e-19 85.1
Msa0473470 MtrunA17_Chr2g0333851 36.296 135 71 5 89 208 138 272 7.30e-19 82.8
Msa0473470 MtrunA17_Chr1g0188941 44.595 74 41 0 103 176 37 110 8.16e-19 78.6
Msa0473470 MtrunA17_Chr4g0053281 44.186 86 44 2 89 173 241 323 2.12e-18 82.0
Msa0473470 MtrunA17_Chr4g0051181 48.000 75 38 1 104 177 230 304 2.30e-18 82.4
Msa0473470 MtrunA17_Chr2g0322391 47.297 74 38 1 104 176 336 409 2.35e-18 82.8
Msa0473470 MtrunA17_Chr4g0060271 44.706 85 46 1 93 176 231 315 4.16e-18 82.0
Msa0473470 MtrunA17_Chr4g0025051 49.351 77 38 1 104 179 322 398 4.75e-18 81.6
Msa0473470 MtrunA17_Chr2g0293481 34.711 121 75 2 57 176 210 327 4.70e-17 79.0
Msa0473470 MtrunA17_Chr3g0136961 52.542 59 27 1 116 173 137 195 6.80e-17 77.0
Msa0473470 MtrunA17_Chr7g0216891 40.816 98 54 2 77 173 182 276 7.39e-17 78.2
Msa0473470 MtrunA17_Chr2g0319961 41.758 91 50 2 89 176 50 140 1.27e-16 75.9
Msa0473470 MtrunA17_Chr5g0401821 44.706 85 43 2 90 173 175 256 1.35e-16 75.9
Msa0473470 MtrunA17_Chr1g0147881 45.455 88 42 4 87 173 237 319 1.35e-16 77.0
Msa0473470 MtrunA17_Chr7g0270051 42.553 94 42 3 90 176 25 113 2.16e-16 75.5
Msa0473470 MtrunA17_Chr8g0379461 47.143 70 36 1 118 186 77 146 2.82e-16 74.7
Msa0473470 MtrunA17_Chr4g0071521 44.828 87 41 2 88 173 222 302 2.90e-16 75.9
Msa0473470 MtrunA17_Chr4g0001361 49.206 63 31 1 115 176 160 222 1.38e-15 73.9
Msa0473470 MtrunA17_Chr5g0447711 26.286 175 111 4 3 176 132 289 1.62e-15 73.6
Msa0473470 MtrunA17_Chr4g0025061 45.333 75 40 1 104 177 347 421 2.33e-15 73.9
Msa0473470 MtrunA17_Chr8g0348311 45.455 66 35 1 114 178 152 217 4.03e-15 72.8
Msa0473470 MtrunA17_Chr1g0202461 50.000 60 29 1 118 176 262 321 6.71e-15 72.4
Msa0473470 MtrunA17_Chr8g0387501 50.000 60 29 1 118 176 130 189 1.08e-14 70.9
Msa0473470 MtrunA17_Chr7g0248691 47.619 63 32 1 115 176 152 214 1.29e-14 71.2
Msa0473470 MtrunA17_Chr1g0184691 41.250 80 46 1 95 173 271 350 2.19e-14 70.9
Msa0473470 MtrunA17_Chr1g0150281 47.368 57 29 1 118 173 141 197 3.50e-14 69.7
Msa0473470 MtrunA17_Chr2g0284321 48.333 60 30 1 118 176 36 95 1.15e-13 67.0
Msa0473470 MtrunA17_Chr7g0228941 32.632 95 63 1 94 187 29 123 2.09e-13 64.3
Msa0473470 MtrunA17_Chr1g0150271 36.905 84 52 1 115 197 99 182 5.17e-13 65.9
Msa0473470 MtrunA17_Chr3g0139021 37.500 88 46 3 88 173 291 371 8.50e-13 66.2
Msa0473470 MtrunA17_Chr2g0289181 43.750 64 35 1 114 176 11 74 9.35e-13 65.1
Msa0473470 MtrunA17_Chr4g0024391 34.906 106 61 3 104 208 216 314 6.09e-12 63.9
Msa0473470 MtrunA17_Chr5g0432071 47.619 63 32 1 117 179 104 165 2.42e-11 60.8
Msa0473470 MtrunA17_Chr2g0315381 37.500 96 54 3 101 193 131 223 6.36e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473470 AT5G64810.1 58.559 111 42 2 89 199 83 189 1.68e-39 134
Msa0473470 AT5G26170.1 75.000 72 18 0 104 175 100 171 7.78e-37 127
Msa0473470 AT4G18170.1 50.526 95 45 1 86 178 139 233 2.78e-28 108
Msa0473470 AT5G41570.1 50.000 92 44 1 86 177 67 156 3.74e-28 104
Msa0473470 AT2G46130.1 58.667 75 29 1 103 177 16 88 4.45e-28 102
Msa0473470 AT3G01970.1 60.000 70 28 0 104 173 52 121 7.16e-28 103
Msa0473470 AT5G49520.1 59.459 74 30 0 104 177 208 281 1.39e-27 108
Msa0473470 AT1G29860.1 47.573 103 48 2 104 200 123 225 1.56e-27 105
Msa0473470 AT5G46350.1 55.263 76 34 0 103 178 169 244 5.29e-27 105
Msa0473470 AT2G44745.1 51.648 91 35 1 83 173 120 201 6.44e-27 102
Msa0473470 AT2G21900.1 45.455 99 46 2 86 181 80 173 6.69e-27 102
Msa0473470 AT1G13960.2 43.810 105 58 1 72 176 212 315 3.58e-26 103
Msa0473470 AT1G13960.2 54.688 64 28 1 116 179 75 137 1.39e-16 77.4
Msa0473470 AT1G13960.1 43.810 105 58 1 72 176 365 468 4.43e-26 105
Msa0473470 AT1G13960.1 55.556 63 27 1 117 179 229 290 1.33e-16 77.8
Msa0473470 AT2G47260.1 48.000 100 49 1 80 179 140 236 4.76e-26 103
Msa0473470 AT3G62340.1 54.217 83 38 0 95 177 96 178 5.36e-26 101
Msa0473470 AT5G13080.1 57.143 70 30 0 104 173 54 123 8.40e-26 97.8
Msa0473470 AT1G69310.4 54.795 73 33 0 103 175 133 205 3.76e-25 99.8
Msa0473470 AT1G69310.2 54.795 73 33 0 103 175 133 205 3.76e-25 99.8
Msa0473470 AT1G69310.1 54.795 73 33 0 103 175 133 205 3.76e-25 99.8
Msa0473470 AT1G64000.1 51.220 82 38 1 104 185 101 180 6.80e-25 97.1
Msa0473470 AT2G04880.2 39.552 134 65 3 78 198 239 369 7.06e-25 101
Msa0473470 AT2G04880.1 39.552 134 65 3 78 198 263 393 9.44e-25 101
Msa0473470 AT2G03340.1 53.333 75 35 0 103 177 401 475 9.76e-25 101
Msa0473470 AT2G03340.1 42.105 95 50 2 86 176 215 308 1.06e-15 75.5
Msa0473470 AT2G30250.1 49.485 97 42 2 87 176 291 387 2.38e-24 99.4
Msa0473470 AT4G39410.1 47.872 94 39 2 85 178 200 283 2.42e-24 97.8
Msa0473470 AT2G46130.2 56.000 75 27 2 103 177 16 84 9.82e-24 91.3
Msa0473470 AT5G56270.1 50.000 88 43 1 91 177 460 547 1.03e-23 98.6
Msa0473470 AT5G56270.1 55.000 60 26 1 117 176 273 331 1.42e-14 72.0
Msa0473470 AT5G07100.2 50.549 91 41 2 86 176 114 200 1.47e-23 94.0
Msa0473470 AT5G07100.2 46.667 60 32 0 117 176 24 83 1.52e-11 61.6
Msa0473470 AT5G07100.4 50.549 91 41 2 86 176 114 200 1.47e-23 94.0
Msa0473470 AT5G07100.4 46.667 60 32 0 117 176 24 83 1.52e-11 61.6
Msa0473470 AT5G07100.5 50.549 91 41 2 86 176 114 200 1.47e-23 94.0
Msa0473470 AT5G07100.5 46.667 60 32 0 117 176 24 83 1.52e-11 61.6
Msa0473470 AT5G07100.3 50.549 91 41 2 86 176 114 200 1.47e-23 94.0
Msa0473470 AT5G07100.3 46.667 60 32 0 117 176 24 83 1.52e-11 61.6
Msa0473470 AT4G26640.5 52.000 75 36 0 103 177 191 265 1.88e-23 96.7
Msa0473470 AT4G26640.5 48.387 62 31 1 115 176 33 93 1.48e-12 65.9
Msa0473470 AT4G26640.6 52.000 75 36 0 103 177 191 265 1.88e-23 96.7
Msa0473470 AT4G26640.6 48.387 62 31 1 115 176 33 93 1.48e-12 65.9
Msa0473470 AT4G26640.4 52.000 75 36 0 103 177 191 265 1.88e-23 96.7
Msa0473470 AT4G26640.4 48.387 62 31 1 115 176 33 93 1.48e-12 65.9
Msa0473470 AT4G26640.3 52.000 75 36 0 103 177 191 265 1.88e-23 96.7
Msa0473470 AT4G26640.3 48.387 62 31 1 115 176 33 93 1.48e-12 65.9
Msa0473470 AT5G07100.1 50.549 91 41 2 86 176 207 293 2.16e-23 95.5
Msa0473470 AT5G07100.1 35.714 112 60 3 77 176 65 176 5.90e-12 63.9
Msa0473470 AT4G26640.7 52.000 75 36 0 103 177 327 401 2.49e-23 97.4
Msa0473470 AT4G26640.7 48.387 62 31 1 115 176 169 229 1.11e-12 66.6
Msa0473470 AT4G26640.2 52.000 75 36 0 103 177 367 441 2.71e-23 97.4
Msa0473470 AT4G26640.2 48.387 62 31 1 115 176 209 269 1.10e-12 66.6
Msa0473470 AT2G38470.1 53.333 75 35 0 103 177 348 422 2.98e-23 97.1
Msa0473470 AT2G38470.1 45.833 72 37 2 105 176 173 242 6.72e-12 64.3
Msa0473470 AT4G26640.1 52.000 75 36 0 103 177 295 369 3.02e-23 97.1
Msa0473470 AT4G26640.1 48.387 62 31 1 115 176 137 197 1.31e-12 66.2
Msa0473470 AT3G01080.1 50.000 74 37 0 103 176 292 365 5.39e-23 95.9
Msa0473470 AT3G01080.1 51.613 62 29 1 117 178 167 227 7.09e-14 69.7
Msa0473470 AT3G01080.2 50.000 74 37 0 103 176 330 403 6.12e-23 95.9
Msa0473470 AT3G01080.2 51.613 62 29 1 117 178 205 265 7.49e-14 69.7
Msa0473470 AT4G26440.1 53.333 75 35 0 103 177 358 432 6.28e-22 93.6
Msa0473470 AT4G26440.1 53.333 60 27 1 117 176 178 236 2.08e-13 68.6
Msa0473470 AT1G69310.3 52.055 73 31 1 103 175 133 201 9.70e-21 87.8
Msa0473470 AT4G04450.2 48.649 74 37 1 104 176 185 258 3.02e-19 85.5
Msa0473470 AT1G68150.1 48.052 77 39 1 104 179 222 298 3.50e-19 84.7
Msa0473470 AT4G22070.4 50.000 74 36 1 104 176 284 357 7.10e-19 84.7
Msa0473470 AT4G22070.3 50.000 74 36 1 104 176 284 357 7.10e-19 84.7
Msa0473470 AT4G22070.2 50.000 74 36 1 104 176 284 357 7.10e-19 84.7
Msa0473470 AT4G22070.1 50.000 74 36 1 104 176 284 357 7.10e-19 84.7
Msa0473470 AT1G62300.1 50.000 74 36 1 104 176 299 372 9.06e-19 84.3
Msa0473470 AT4G04450.1 48.649 74 37 1 104 176 279 352 9.64e-19 84.3
Msa0473470 AT4G30935.1 51.613 62 30 0 115 176 329 390 2.11e-18 83.2
Msa0473470 AT1G55600.1 46.575 73 39 0 104 176 294 366 5.31e-18 82.0
Msa0473470 AT5G43290.1 45.055 91 41 2 92 173 80 170 8.11e-18 79.7
Msa0473470 AT4G01720.1 43.750 96 49 2 86 176 204 299 8.65e-18 81.3
Msa0473470 AT5G15130.2 45.455 77 41 1 104 179 172 248 1.68e-17 80.5
Msa0473470 AT2G25000.2 44.156 77 42 1 116 191 102 178 1.91e-17 78.2
Msa0473470 AT2G25000.4 44.156 77 42 1 116 191 102 178 1.91e-17 78.2
Msa0473470 AT2G34830.1 37.037 108 63 4 71 176 171 275 1.91e-17 80.1
Msa0473470 AT2G34830.2 37.037 108 63 4 71 176 180 284 1.95e-17 80.1
Msa0473470 AT5G15130.1 45.455 77 41 1 104 179 214 290 2.06e-17 80.5
Msa0473470 AT2G25000.3 44.156 77 42 1 116 191 124 200 3.22e-17 77.8
Msa0473470 AT1G18860.1 47.297 74 38 1 104 176 226 299 4.19e-17 79.3
Msa0473470 AT2G25000.1 44.156 77 42 1 116 191 145 221 4.54e-17 77.8
Msa0473470 AT2G23320.1 42.353 85 45 2 90 173 216 297 5.61e-17 78.2
Msa0473470 AT4G31800.2 50.000 62 30 1 116 176 110 171 8.42e-17 76.6
Msa0473470 AT1G80840.1 36.538 104 59 3 76 176 107 206 8.77e-17 77.4
Msa0473470 AT4G24240.1 45.977 87 40 2 88 173 258 338 1.02e-16 77.8
Msa0473470 AT4G31800.1 50.000 62 30 1 116 176 175 236 1.53e-16 76.6
Msa0473470 AT1G29280.1 40.000 95 54 2 88 179 43 137 2.73e-16 75.5
Msa0473470 AT1G30650.1 36.792 106 61 4 73 176 176 277 5.10e-16 76.3
Msa0473470 AT2G37260.3 36.893 103 55 2 71 173 233 325 1.22e-15 74.7
Msa0473470 AT2G37260.3 52.542 59 27 1 118 176 86 143 4.21e-12 64.7
Msa0473470 AT2G37260.2 36.893 103 55 2 71 173 231 323 1.31e-15 74.7
Msa0473470 AT2G37260.2 52.542 59 27 1 118 176 84 141 4.74e-12 64.3
Msa0473470 AT3G58710.2 39.785 93 55 1 88 179 41 133 1.32e-15 73.6
Msa0473470 AT2G24570.1 39.362 94 55 2 92 183 218 311 1.33e-15 74.3
Msa0473470 AT2G37260.1 50.000 58 29 0 116 173 348 405 1.48e-15 74.7
Msa0473470 AT2G37260.1 52.542 59 27 1 118 176 166 223 3.35e-12 65.1
Msa0473470 AT2G30590.1 45.000 80 43 1 95 173 291 370 1.48e-15 74.7
Msa0473470 AT4G01250.1 48.387 62 31 1 118 178 129 190 3.15e-15 73.2
Msa0473470 AT5G28650.1 52.459 61 28 1 114 173 259 319 3.94e-15 73.2
Msa0473470 AT3G58710.1 39.130 92 55 1 89 179 43 134 5.47e-15 72.0
Msa0473470 AT4G31550.1 39.759 83 49 1 92 173 221 303 6.41e-15 72.4
Msa0473470 AT4G31550.2 41.250 80 46 1 95 173 223 302 7.60e-15 72.0
Msa0473470 AT3G04670.1 50.820 61 29 1 114 173 259 319 2.13e-14 70.9
Msa0473470 AT5G52830.1 46.269 67 35 1 111 176 159 225 3.09e-14 70.5
Msa0473470 AT3G01080.3 51.613 62 29 1 117 178 205 265 5.78e-14 69.7
Msa0473470 AT4G23550.1 46.032 63 33 1 115 176 138 200 7.32e-14 69.3
Msa0473470 AT5G45050.4 50.000 60 29 1 118 176 1042 1101 4.17e-13 68.2
Msa0473470 AT5G45050.1 50.000 60 29 1 118 176 1181 1240 4.30e-13 68.2
Msa0473470 AT5G45050.2 50.000 60 29 1 118 176 1153 1212 4.90e-13 67.8
Msa0473470 AT1G69810.2 40.698 86 49 2 93 176 121 206 7.66e-13 66.6
Msa0473470 AT1G69810.1 45.455 66 34 2 116 179 202 267 1.01e-12 66.6
Msa0473470 AT5G24110.1 42.373 59 31 1 116 171 112 170 5.23e-12 63.9
Msa0473470 AT2G40740.1 26.374 182 119 5 25 194 78 256 1.16e-11 62.8
Msa0473470 AT2G40740.3 26.374 182 119 5 25 194 87 265 1.67e-11 62.4
Msa0473470 AT1G66560.1 44.828 58 29 1 117 171 103 160 5.38e-11 60.5
Msa0473470 AT4G12020.2 45.902 61 32 1 116 176 467 526 7.79e-11 61.2
Msa0473470 AT4G12020.10 45.902 61 32 1 116 176 467 526 7.85e-11 61.2
Msa0473470 AT4G12020.4 45.902 61 32 1 116 176 467 526 8.01e-11 61.2
Msa0473470 AT4G12020.3 45.902 61 32 1 116 176 467 526 8.16e-11 61.2
Msa0473470 AT4G12020.6 45.902 61 32 1 116 176 467 526 8.75e-11 61.2
Msa0473470 AT4G12020.8 45.902 61 32 1 116 176 467 526 8.75e-11 61.2
Msa0473470 AT4G12020.7 45.902 61 32 1 116 176 467 526 8.76e-11 61.2
Msa0473470 AT4G12020.1 45.902 61 32 1 116 176 467 526 8.76e-11 61.2
Msa0473470 AT4G12020.9 45.902 61 32 1 116 176 467 526 8.76e-11 61.2
Msa0473470 AT4G12020.5 45.902 61 32 1 116 176 400 459 9.28e-11 61.2

Find 76 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGATAAGGGTTAGAATT+AGG 0.170308 3_3:+76087749 None:intergenic
ATTGCGAGGGCCATGTATTT+TGG 0.189109 3_3:-76087776 None:intergenic
CATTAATTTATCTGATTATC+TGG 0.206659 3_3:-76087690 Msa0473470:CDS
ATGATTAACTTAGCATTAAT+TGG 0.209206 3_3:+76086002 None:intergenic
GAGATCGCAGCTTGAGATTA+TGG 0.274833 3_3:-76087338 Msa0473470:CDS
TAACATTTCCCTTGAATAAC+AGG 0.298278 3_3:+76085885 None:intergenic
ACTGGTTAAGGATATGAAAA+AGG 0.325451 3_3:-76085845 Msa0473470:three_prime_UTR
TGTGATAAGGGTTAGAATTA+GGG 0.327958 3_3:+76087750 None:intergenic
CATCATGTTATTGTTCTTGT+TGG 0.335475 3_3:+76087532 None:intergenic
ATACTGCACCCCAGTGTCTT+TGG 0.341378 3_3:-76086085 Msa0473470:CDS
GATATATTATTATTGTGATA+AGG 0.354376 3_3:+76087737 None:intergenic
CTCGTTCTAAACGTCACTCT+TGG 0.361959 3_3:+76087358 None:intergenic
GGATTCAAATGGAGGAAGTA+TGG 0.376820 3_3:-76087310 Msa0473470:CDS
TGGGGTGCAGTATGAATTGC+AGG 0.381764 3_3:+76086095 None:intergenic
GGCTATCTTCCTGTTATTCA+AGG 0.382058 3_3:-76085894 Msa0473470:three_prime_UTR
ATATATTATTATTGTGATAA+GGG 0.384981 3_3:+76087738 None:intergenic
ATCGAGTTGGTAAGTTGTAT+TGG 0.419679 3_3:-76085915 Msa0473470:three_prime_UTR
TTTATCTGATTATCTGGTGC+TGG 0.421050 3_3:-76087684 Msa0473470:CDS
GTTATTGTTCTTGTTGGTAG+AGG 0.430991 3_3:+76087538 None:intergenic
GATATTAATGTCATCAATCA+AGG 0.432364 3_3:-76087584 Msa0473470:CDS
GTGTCTTTGGTGTATTCCAA+TGG 0.452221 3_3:-76086072 Msa0473470:CDS
GAAATGTTAACCGGTGCCCC+CGG 0.456639 3_3:-76085871 Msa0473470:three_prime_UTR
CAGCTTGAGATTATGGATGA+TGG 0.458517 3_3:-76087331 Msa0473470:CDS
GTGCTGCTGTGGCCATTCAT+TGG 0.459328 3_3:+76086044 None:intergenic
AGAAAAGGGTGGAAAGGGAT+AGG 0.462080 3_3:-76086173 Msa0473470:CDS
AAGGATGTGGTGTGAAGAAA+AGG 0.469530 3_3:-76086188 Msa0473470:CDS
TCGTTCTAAACGTCACTCTT+GGG 0.470165 3_3:+76087359 None:intergenic
GAAAAGGGTGGAAAGGGATA+GGG 0.470665 3_3:-76086172 Msa0473470:CDS
ATTGATGACATTAATATCAA+TGG 0.474010 3_3:+76087589 None:intergenic
ATATCCTTAACCAGTGCCCC+GGG 0.474150 3_3:+76085853 None:intergenic
TATTCAAGGGAAATGTTAAC+CGG 0.474812 3_3:-76085880 Msa0473470:three_prime_UTR
TGTCTTTGGTGTATTCCAAT+GGG 0.475279 3_3:-76086071 Msa0473470:CDS
CCATTCATTGGAGGTCCCAT+TGG 0.480609 3_3:+76086056 None:intergenic
ACGTAAAAGCAGGGAGATGA+AGG 0.487697 3_3:-76087401 Msa0473470:CDS
TTAATGCTAAGTTAATCATA+TGG 0.493411 3_3:-76085998 Msa0473470:exon
TTGGAAGAAGAGGTTGCAGA+AGG 0.494174 3_3:+76086021 None:intergenic
TGTGAAGAAAAGGGTGGAAA+GGG 0.502030 3_3:-76086178 Msa0473470:CDS
CATATCCTTAACCAGTGCCC+CGG 0.511133 3_3:+76085852 None:intergenic
CCAATGGGACCTCCAATGAA+TGG 0.516834 3_3:-76086056 Msa0473470:CDS
AGGAACTACTACAAGTGTTC+AGG 0.517573 3_3:-76086213 Msa0473470:CDS
AAGAGTAATTACCTTGGGTA+TGG 0.521127 3_3:+76087265 None:intergenic
TTGACAGGAAACGTAAAAGC+AGG 0.524253 3_3:-76087411 Msa0473470:intron
CTGCTGTGGCCATTCATTGG+AGG 0.525241 3_3:+76086047 None:intergenic
TTATGGATGATGGATTCAAA+TGG 0.530112 3_3:-76087321 Msa0473470:CDS
TTAGCATTAATTGGAAGAAG+AGG 0.534274 3_3:+76086011 None:intergenic
TATGTGCTAACAAGCTATGA+AGG 0.537065 3_3:-76086138 Msa0473470:CDS
GACATTAATATCAATGGTGG+TGG 0.540399 3_3:+76087595 None:intergenic
ATTAGGGTTTCCAAAATACA+TGG 0.543667 3_3:+76087766 None:intergenic
GCTATCTTCCTGTTATTCAA+GGG 0.544298 3_3:-76085893 Msa0473470:three_prime_UTR
TACTACAAGTGTTCAGGTGA+AGG 0.550615 3_3:-76086207 Msa0473470:CDS
TTGGAATACACCAAAGACAC+TGG 0.551488 3_3:+76086075 None:intergenic
AAATCAGACGAGGAAGGAGG+AGG 0.561547 3_3:+76087713 None:intergenic
GTGTGAAGAAAAGGGTGGAA+AGG 0.565384 3_3:-76086179 Msa0473470:CDS
GAATGTTGGTCACAAAGTAC+AGG 0.570695 3_3:-76087647 Msa0473470:CDS
GTTGCAGAAGGGTGCTGCTG+TGG 0.575437 3_3:+76086033 None:intergenic
CTAGGAAGGTCTGATCGAGT+TGG 0.594851 3_3:-76085928 Msa0473470:three_prime_UTR
TGGATGATGGATTCAAATGG+AGG 0.596809 3_3:-76087318 Msa0473470:CDS
TTAATATCAATGGTGGTGGA+AGG 0.605778 3_3:+76087599 None:intergenic
TGGAATACACCAAAGACACT+GGG 0.607977 3_3:+76086076 None:intergenic
ATGATGAACATCAAGAATGT+TGG 0.619679 3_3:-76087661 Msa0473470:CDS
AAGTGTTCAGGTGAAGGATG+TGG 0.620118 3_3:-76086201 Msa0473470:CDS
GGGGTGCAGTATGAATTGCA+GGG 0.623339 3_3:+76086096 None:intergenic
AACTGAATCATCAGACAACA+AGG 0.625525 3_3:-76087624 Msa0473470:CDS
AGGATGTGGTGTGAAGAAAA+GGG 0.633271 3_3:-76086187 Msa0473470:CDS
TGGAAGAAGAGGTTGCAGAA+GGG 0.634753 3_3:+76086022 None:intergenic
ATGAAATCAGACGAGGAAGG+AGG 0.639707 3_3:+76087710 None:intergenic
TCAAGAATAGTCCATACCCA+AGG 0.659061 3_3:-76087276 Msa0473470:intron
ATCCTTAACCAGTGCCCCGG+GGG 0.661453 3_3:+76085855 None:intergenic
GGGTGCAGTATGAATTGCAG+GGG 0.665109 3_3:+76086097 None:intergenic
ATGTGGTGTGAAGAAAAGGG+TGG 0.669156 3_3:-76086184 Msa0473470:CDS
TGACAGGAAACGTAAAAGCA+GGG 0.673462 3_3:-76087410 Msa0473470:intron
GATGACATTAATATCAATGG+TGG 0.679350 3_3:+76087592 None:intergenic
TTAATGAAATCAGACGAGGA+AGG 0.681005 3_3:+76087707 None:intergenic
TAAATTAATGAAATCAGACG+AGG 0.714233 3_3:+76087703 None:intergenic
TATCCTTAACCAGTGCCCCG+GGG 0.718949 3_3:+76085854 None:intergenic
GGAATACACCAAAGACACTG+GGG 0.775844 3_3:+76086077 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTATTATTGTGATAA+GGG + chr3_3:76085874-76085893 None:intergenic 10.0%
!!! ATAATAATGTATGTATATTT+TGG - chr3_3:76086165-76086184 Msa0473470:CDS 10.0%
!! AGTAAATTTGTATAAAAAAA+TGG + chr3_3:76086633-76086652 None:intergenic 10.0%
!! ATATATTATTATTGTGATAA+GGG + chr3_3:76085874-76085893 None:intergenic 10.0%
!!! ATAATAATGTATGTATATTT+TGG - chr3_3:76086165-76086184 Msa0473470:CDS 10.0%
!! AGTAAATTTGTATAAAAAAA+TGG + chr3_3:76086633-76086652 None:intergenic 10.0%
!! GATATATTATTATTGTGATA+AGG + chr3_3:76085875-76085894 None:intergenic 15.0%
!!! CAAAATAACTTTTCTATTTA+TGG + chr3_3:76086590-76086609 None:intergenic 15.0%
!! GATCATATATATAAATATTG+TGG - chr3_3:76086756-76086775 Msa0473470:intron 15.0%
!! TCATAATTATAAACTGTATA+CGG - chr3_3:76086825-76086844 Msa0473470:intron 15.0%
!! TAATTAGCAAACAAATTAAA+TGG - chr3_3:76086923-76086942 Msa0473470:intron 15.0%
!!! CTTTTTCTTTAAATTATTCT+AGG - chr3_3:76087297-76087316 Msa0473470:CDS 15.0%
!! GATATATTATTATTGTGATA+AGG + chr3_3:76085875-76085894 None:intergenic 15.0%
!!! CAAAATAACTTTTCTATTTA+TGG + chr3_3:76086590-76086609 None:intergenic 15.0%
!! GATCATATATATAAATATTG+TGG - chr3_3:76086756-76086775 Msa0473470:intron 15.0%
!! TCATAATTATAAACTGTATA+CGG - chr3_3:76086825-76086844 Msa0473470:intron 15.0%
!! TAATTAGCAAACAAATTAAA+TGG - chr3_3:76086923-76086942 Msa0473470:intron 15.0%
!!! CTTTTTCTTTAAATTATTCT+AGG - chr3_3:76087297-76087316 Msa0473470:CDS 15.0%
!! CATTAATTTATCTGATTATC+TGG - chr3_3:76085919-76085938 Msa0473470:three_prime_UTR 20.0%
!!! ATTGATGACATTAATATCAA+TGG + chr3_3:76086023-76086042 None:intergenic 20.0%
!! AAAAATTAACATCACAAAAG+TGG + chr3_3:76086130-76086149 None:intergenic 20.0%
!!! TATGTATATTTTGGATTCTT+TGG - chr3_3:76086174-76086193 Msa0473470:CDS 20.0%
!! AACATTATCCTTAACTTAAT+TGG - chr3_3:76086692-76086711 Msa0473470:intron 20.0%
!! CATATATATAAATATTGTGG+CGG - chr3_3:76086759-76086778 Msa0473470:intron 20.0%
!! TACATATTGCATATATGATT+GGG + chr3_3:76086872-76086891 None:intergenic 20.0%
!! TTACATATTGCATATATGAT+TGG + chr3_3:76086873-76086892 None:intergenic 20.0%
!!! TAATTACACACAAAATTTTC+TGG + chr3_3:76087329-76087348 None:intergenic 20.0%
!! ATGATTAACTTAGCATTAAT+TGG + chr3_3:76087610-76087629 None:intergenic 20.0%
!! TTAATGCTAAGTTAATCATA+TGG - chr3_3:76087611-76087630 Msa0473470:CDS 20.0%
!! CATTAATTTATCTGATTATC+TGG - chr3_3:76085919-76085938 Msa0473470:three_prime_UTR 20.0%
!!! ATTGATGACATTAATATCAA+TGG + chr3_3:76086023-76086042 None:intergenic 20.0%
!! AAAAATTAACATCACAAAAG+TGG + chr3_3:76086130-76086149 None:intergenic 20.0%
!!! TATGTATATTTTGGATTCTT+TGG - chr3_3:76086174-76086193 Msa0473470:CDS 20.0%
!! AACATTATCCTTAACTTAAT+TGG - chr3_3:76086692-76086711 Msa0473470:intron 20.0%
!! CATATATATAAATATTGTGG+CGG - chr3_3:76086759-76086778 Msa0473470:intron 20.0%
!! TACATATTGCATATATGATT+GGG + chr3_3:76086872-76086891 None:intergenic 20.0%
!! TTACATATTGCATATATGAT+TGG + chr3_3:76086873-76086892 None:intergenic 20.0%
!!! TAATTACACACAAAATTTTC+TGG + chr3_3:76087329-76087348 None:intergenic 20.0%
!! ATGATTAACTTAGCATTAAT+TGG + chr3_3:76087610-76087629 None:intergenic 20.0%
!! TTAATGCTAAGTTAATCATA+TGG - chr3_3:76087611-76087630 Msa0473470:CDS 20.0%
! TAAATTAATGAAATCAGACG+AGG + chr3_3:76085909-76085928 None:intergenic 25.0%
! GATATTAATGTCATCAATCA+AGG - chr3_3:76086025-76086044 Msa0473470:CDS 25.0%
! TATCCTTAACTTAATTGGAT+AGG - chr3_3:76086697-76086716 Msa0473470:intron 25.0%
! TTTCCTATCCAATTAAGTTA+AGG + chr3_3:76086703-76086722 None:intergenic 25.0%
! AACTTAATTGGATAGGAAAT+AGG - chr3_3:76086704-76086723 Msa0473470:intron 25.0%
! TAAATTAATGAAATCAGACG+AGG + chr3_3:76085909-76085928 None:intergenic 25.0%
! GATATTAATGTCATCAATCA+AGG - chr3_3:76086025-76086044 Msa0473470:CDS 25.0%
! TATCCTTAACTTAATTGGAT+AGG - chr3_3:76086697-76086716 Msa0473470:intron 25.0%
! TTTCCTATCCAATTAAGTTA+AGG + chr3_3:76086703-76086722 None:intergenic 25.0%
! AACTTAATTGGATAGGAAAT+AGG - chr3_3:76086704-76086723 Msa0473470:intron 25.0%
TGTGATAAGGGTTAGAATTA+GGG + chr3_3:76085862-76085881 None:intergenic 30.0%
TTGTGATAAGGGTTAGAATT+AGG + chr3_3:76085863-76085882 None:intergenic 30.0%
ATGATGAACATCAAGAATGT+TGG - chr3_3:76085948-76085967 Msa0473470:three_prime_UTR 30.0%
GATGACATTAATATCAATGG+TGG + chr3_3:76086020-76086039 None:intergenic 30.0%
CATCATGTTATTGTTCTTGT+TGG + chr3_3:76086080-76086099 None:intergenic 30.0%
!! TTATGGATGATGGATTCAAA+TGG - chr3_3:76086288-76086307 Msa0473470:intron 30.0%
TGACTAAGAGTAATTACCTT+GGG + chr3_3:76086352-76086371 None:intergenic 30.0%
TTGACTAAGAGTAATTACCT+TGG + chr3_3:76086353-76086372 None:intergenic 30.0%
TCTTTAATTCATTGCCTTCT+TGG - chr3_3:76086379-76086398 Msa0473470:intron 30.0%
CTTGAGTTAAAAGTTGTGTA+CGG + chr3_3:76086525-76086544 None:intergenic 30.0%
!! GTACACAACTTTTAACTCAA+GGG - chr3_3:76086524-76086543 Msa0473470:intron 30.0%
ATTGTTTAACCAATGCTCTT+AGG - chr3_3:76086660-76086679 Msa0473470:intron 30.0%
TAAACTGTATACGGTTTAAG+TGG - chr3_3:76086834-76086853 Msa0473470:intron 30.0%
!! TGCAAAAGTGCCATTATTTA+CGG + chr3_3:76087155-76087174 None:intergenic 30.0%
TTAGCATTAATTGGAAGAAG+AGG + chr3_3:76087601-76087620 None:intergenic 30.0%
!!! TAGCTGCTGCTTTTAATAAA+AGG - chr3_3:76087658-76087677 Msa0473470:CDS 30.0%
! CTTTTAATAAAAGGCTAGGA+AGG - chr3_3:76087667-76087686 Msa0473470:CDS 30.0%
TAACATTTCCCTTGAATAAC+AGG + chr3_3:76087727-76087746 None:intergenic 30.0%
TATTCAAGGGAAATGTTAAC+CGG - chr3_3:76087729-76087748 Msa0473470:CDS 30.0%
ACTGGTTAAGGATATGAAAA+AGG - chr3_3:76087764-76087783 Msa0473470:CDS 30.0%
TGTGATAAGGGTTAGAATTA+GGG + chr3_3:76085862-76085881 None:intergenic 30.0%
TTGTGATAAGGGTTAGAATT+AGG + chr3_3:76085863-76085882 None:intergenic 30.0%
ATGATGAACATCAAGAATGT+TGG - chr3_3:76085948-76085967 Msa0473470:three_prime_UTR 30.0%
GATGACATTAATATCAATGG+TGG + chr3_3:76086020-76086039 None:intergenic 30.0%
CATCATGTTATTGTTCTTGT+TGG + chr3_3:76086080-76086099 None:intergenic 30.0%
!! TTATGGATGATGGATTCAAA+TGG - chr3_3:76086288-76086307 Msa0473470:intron 30.0%
TGACTAAGAGTAATTACCTT+GGG + chr3_3:76086352-76086371 None:intergenic 30.0%
TTGACTAAGAGTAATTACCT+TGG + chr3_3:76086353-76086372 None:intergenic 30.0%
TCTTTAATTCATTGCCTTCT+TGG - chr3_3:76086379-76086398 Msa0473470:intron 30.0%
CTTGAGTTAAAAGTTGTGTA+CGG + chr3_3:76086525-76086544 None:intergenic 30.0%
!! GTACACAACTTTTAACTCAA+GGG - chr3_3:76086524-76086543 Msa0473470:intron 30.0%
ATTGTTTAACCAATGCTCTT+AGG - chr3_3:76086660-76086679 Msa0473470:intron 30.0%
TAAACTGTATACGGTTTAAG+TGG - chr3_3:76086834-76086853 Msa0473470:intron 30.0%
!! TGCAAAAGTGCCATTATTTA+CGG + chr3_3:76087155-76087174 None:intergenic 30.0%
TTAGCATTAATTGGAAGAAG+AGG + chr3_3:76087601-76087620 None:intergenic 30.0%
!!! TAGCTGCTGCTTTTAATAAA+AGG - chr3_3:76087658-76087677 Msa0473470:CDS 30.0%
! CTTTTAATAAAAGGCTAGGA+AGG - chr3_3:76087667-76087686 Msa0473470:CDS 30.0%
TAACATTTCCCTTGAATAAC+AGG + chr3_3:76087727-76087746 None:intergenic 30.0%
TATTCAAGGGAAATGTTAAC+CGG - chr3_3:76087729-76087748 Msa0473470:CDS 30.0%
TTAATGAAATCAGACGAGGA+AGG + chr3_3:76085905-76085924 None:intergenic 35.0%
TTTATCTGATTATCTGGTGC+TGG - chr3_3:76085925-76085944 Msa0473470:three_prime_UTR 35.0%
AACTGAATCATCAGACAACA+AGG - chr3_3:76085985-76086004 Msa0473470:three_prime_UTR 35.0%
!! TTAATATCAATGGTGGTGGA+AGG + chr3_3:76086013-76086032 None:intergenic 35.0%
GACATTAATATCAATGGTGG+TGG + chr3_3:76086017-76086036 None:intergenic 35.0%
! GTTATTGTTCTTGTTGGTAG+AGG + chr3_3:76086074-76086093 None:intergenic 35.0%
!! TTTGGATTCTTTGGTTTGAC+AGG - chr3_3:76086183-76086202 Msa0473470:CDS 35.0%
AAGAGTAATTACCTTGGGTA+TGG + chr3_3:76086347-76086366 None:intergenic 35.0%
TGTACGGCATGATATTGATA+GGG + chr3_3:76086509-76086528 None:intergenic 35.0%
!! CGTACACAACTTTTAACTCA+AGG - chr3_3:76086523-76086542 Msa0473470:intron 35.0%
TTGGATAGGAAATAGGATAG+TGG - chr3_3:76086711-76086730 Msa0473470:intron 35.0%
!! TGATATATGCTAGTTGATGG+AGG - chr3_3:76086783-76086802 Msa0473470:intron 35.0%
!! GATATATGCTAGTTGATGGA+GGG - chr3_3:76086784-76086803 Msa0473470:intron 35.0%
!! ATATATGCTAGTTGATGGAG+GGG - chr3_3:76086785-76086804 Msa0473470:intron 35.0%
!! AAAAGTGCCATTATTTACGG+GGG + chr3_3:76087152-76087171 None:intergenic 35.0%
!! CAAAAGTGCCATTATTTACG+GGG + chr3_3:76087153-76087172 None:intergenic 35.0%
!! GCAAAAGTGCCATTATTTAC+GGG + chr3_3:76087154-76087173 None:intergenic 35.0%
AGATGTGTACATATACAAGC+AGG - chr3_3:76087376-76087395 Msa0473470:CDS 35.0%
TATGTGCTAACAAGCTATGA+AGG - chr3_3:76087471-76087490 Msa0473470:intron 35.0%
! TGTCTTTGGTGTATTCCAAT+GGG - chr3_3:76087538-76087557 Msa0473470:CDS 35.0%
!!! GCTGCTTTTAATAAAAGGCT+AGG - chr3_3:76087663-76087682 Msa0473470:CDS 35.0%
!! ATCGAGTTGGTAAGTTGTAT+TGG - chr3_3:76087694-76087713 Msa0473470:CDS 35.0%
GCTATCTTCCTGTTATTCAA+GGG - chr3_3:76087716-76087735 Msa0473470:CDS 35.0%
TTAATGAAATCAGACGAGGA+AGG + chr3_3:76085905-76085924 None:intergenic 35.0%
TTTATCTGATTATCTGGTGC+TGG - chr3_3:76085925-76085944 Msa0473470:three_prime_UTR 35.0%
AACTGAATCATCAGACAACA+AGG - chr3_3:76085985-76086004 Msa0473470:three_prime_UTR 35.0%
!! TTAATATCAATGGTGGTGGA+AGG + chr3_3:76086013-76086032 None:intergenic 35.0%
GACATTAATATCAATGGTGG+TGG + chr3_3:76086017-76086036 None:intergenic 35.0%
! GTTATTGTTCTTGTTGGTAG+AGG + chr3_3:76086074-76086093 None:intergenic 35.0%
!! TTTGGATTCTTTGGTTTGAC+AGG - chr3_3:76086183-76086202 Msa0473470:CDS 35.0%
AAGAGTAATTACCTTGGGTA+TGG + chr3_3:76086347-76086366 None:intergenic 35.0%
TGTACGGCATGATATTGATA+GGG + chr3_3:76086509-76086528 None:intergenic 35.0%
!! CGTACACAACTTTTAACTCA+AGG - chr3_3:76086523-76086542 Msa0473470:intron 35.0%
TTGGATAGGAAATAGGATAG+TGG - chr3_3:76086711-76086730 Msa0473470:intron 35.0%
!! TGATATATGCTAGTTGATGG+AGG - chr3_3:76086783-76086802 Msa0473470:intron 35.0%
!! GATATATGCTAGTTGATGGA+GGG - chr3_3:76086784-76086803 Msa0473470:intron 35.0%
!! ATATATGCTAGTTGATGGAG+GGG - chr3_3:76086785-76086804 Msa0473470:intron 35.0%
!! AAAAGTGCCATTATTTACGG+GGG + chr3_3:76087152-76087171 None:intergenic 35.0%
!! CAAAAGTGCCATTATTTACG+GGG + chr3_3:76087153-76087172 None:intergenic 35.0%
!! GCAAAAGTGCCATTATTTAC+GGG + chr3_3:76087154-76087173 None:intergenic 35.0%
AGATGTGTACATATACAAGC+AGG - chr3_3:76087376-76087395 Msa0473470:CDS 35.0%
TATGTGCTAACAAGCTATGA+AGG - chr3_3:76087471-76087490 Msa0473470:intron 35.0%
! TGTCTTTGGTGTATTCCAAT+GGG - chr3_3:76087538-76087557 Msa0473470:CDS 35.0%
!!! GCTGCTTTTAATAAAAGGCT+AGG - chr3_3:76087663-76087682 Msa0473470:CDS 35.0%
!! ATCGAGTTGGTAAGTTGTAT+TGG - chr3_3:76087694-76087713 Msa0473470:CDS 35.0%
GCTATCTTCCTGTTATTCAA+GGG - chr3_3:76087716-76087735 Msa0473470:CDS 35.0%
GAATGTTGGTCACAAAGTAC+AGG - chr3_3:76085962-76085981 Msa0473470:three_prime_UTR 40.0%
TTGACAGGAAACGTAAAAGC+AGG - chr3_3:76086198-76086217 Msa0473470:CDS 40.0%
TGACAGGAAACGTAAAAGCA+GGG - chr3_3:76086199-76086218 Msa0473470:CDS 40.0%
! TCGTTCTAAACGTCACTCTT+GGG + chr3_3:76086253-76086272 None:intergenic 40.0%
CAGCTTGAGATTATGGATGA+TGG - chr3_3:76086278-76086297 Msa0473470:intron 40.0%
!! TGGATGATGGATTCAAATGG+AGG - chr3_3:76086291-76086310 Msa0473470:intron 40.0%
GGATTCAAATGGAGGAAGTA+TGG - chr3_3:76086299-76086318 Msa0473470:intron 40.0%
TCAAGAATAGTCCATACCCA+AGG - chr3_3:76086333-76086352 Msa0473470:intron 40.0%
TATGACGTATGTAGCCAAGA+AGG + chr3_3:76086396-76086415 None:intergenic 40.0%
GTGTACGGCATGATATTGAT+AGG + chr3_3:76086510-76086529 None:intergenic 40.0%
! AATCGATGTCCTAAGAGCAT+TGG + chr3_3:76086672-76086691 None:intergenic 40.0%
! GATAGGAAATAGGATAGTGG+TGG - chr3_3:76086714-76086733 Msa0473470:intron 40.0%
GGCTGATATATGCTAGTTGA+TGG - chr3_3:76086780-76086799 Msa0473470:intron 40.0%
!! TATATGCTAGTTGATGGAGG+GGG - chr3_3:76086786-76086805 Msa0473470:intron 40.0%
TGGTTTCCATTTGTTTGTCC+TGG - chr3_3:76086992-76087011 Msa0473470:intron 40.0%
TCGATTCCAGGACAAACAAA+TGG + chr3_3:76087001-76087020 None:intergenic 40.0%
!! CTACTACTTTTCTCGATTCC+AGG + chr3_3:76087013-76087032 None:intergenic 40.0%
AGGAACTACTACAAGTGTTC+AGG - chr3_3:76087396-76087415 Msa0473470:CDS 40.0%
TACTACAAGTGTTCAGGTGA+AGG - chr3_3:76087402-76087421 Msa0473470:CDS 40.0%
AAGGATGTGGTGTGAAGAAA+AGG - chr3_3:76087421-76087440 Msa0473470:intron 40.0%
AGGATGTGGTGTGAAGAAAA+GGG - chr3_3:76087422-76087441 Msa0473470:intron 40.0%
TGTGAAGAAAAGGGTGGAAA+GGG - chr3_3:76087431-76087450 Msa0473470:intron 40.0%
TGGAATACACCAAAGACACT+GGG + chr3_3:76087536-76087555 None:intergenic 40.0%
TTGGAATACACCAAAGACAC+TGG + chr3_3:76087537-76087556 None:intergenic 40.0%
! GTGTCTTTGGTGTATTCCAA+TGG - chr3_3:76087537-76087556 Msa0473470:CDS 40.0%
GGCTATCTTCCTGTTATTCA+AGG - chr3_3:76087715-76087734 Msa0473470:CDS 40.0%
GAATGTTGGTCACAAAGTAC+AGG - chr3_3:76085962-76085981 Msa0473470:three_prime_UTR 40.0%
TTGACAGGAAACGTAAAAGC+AGG - chr3_3:76086198-76086217 Msa0473470:CDS 40.0%
TGACAGGAAACGTAAAAGCA+GGG - chr3_3:76086199-76086218 Msa0473470:CDS 40.0%
! TCGTTCTAAACGTCACTCTT+GGG + chr3_3:76086253-76086272 None:intergenic 40.0%
CAGCTTGAGATTATGGATGA+TGG - chr3_3:76086278-76086297 Msa0473470:intron 40.0%
!! TGGATGATGGATTCAAATGG+AGG - chr3_3:76086291-76086310 Msa0473470:intron 40.0%
GGATTCAAATGGAGGAAGTA+TGG - chr3_3:76086299-76086318 Msa0473470:intron 40.0%
TCAAGAATAGTCCATACCCA+AGG - chr3_3:76086333-76086352 Msa0473470:intron 40.0%
TATGACGTATGTAGCCAAGA+AGG + chr3_3:76086396-76086415 None:intergenic 40.0%
GTGTACGGCATGATATTGAT+AGG + chr3_3:76086510-76086529 None:intergenic 40.0%
! AATCGATGTCCTAAGAGCAT+TGG + chr3_3:76086672-76086691 None:intergenic 40.0%
! GATAGGAAATAGGATAGTGG+TGG - chr3_3:76086714-76086733 Msa0473470:intron 40.0%
GGCTGATATATGCTAGTTGA+TGG - chr3_3:76086780-76086799 Msa0473470:intron 40.0%
!! TATATGCTAGTTGATGGAGG+GGG - chr3_3:76086786-76086805 Msa0473470:intron 40.0%
TGGTTTCCATTTGTTTGTCC+TGG - chr3_3:76086992-76087011 Msa0473470:intron 40.0%
TCGATTCCAGGACAAACAAA+TGG + chr3_3:76087001-76087020 None:intergenic 40.0%
!! CTACTACTTTTCTCGATTCC+AGG + chr3_3:76087013-76087032 None:intergenic 40.0%
AGGAACTACTACAAGTGTTC+AGG - chr3_3:76087396-76087415 Msa0473470:CDS 40.0%
TACTACAAGTGTTCAGGTGA+AGG - chr3_3:76087402-76087421 Msa0473470:CDS 40.0%
AAGGATGTGGTGTGAAGAAA+AGG - chr3_3:76087421-76087440 Msa0473470:intron 40.0%
AGGATGTGGTGTGAAGAAAA+GGG - chr3_3:76087422-76087441 Msa0473470:intron 40.0%
TGTGAAGAAAAGGGTGGAAA+GGG - chr3_3:76087431-76087450 Msa0473470:intron 40.0%
TGGAATACACCAAAGACACT+GGG + chr3_3:76087536-76087555 None:intergenic 40.0%
TTGGAATACACCAAAGACAC+TGG + chr3_3:76087537-76087556 None:intergenic 40.0%
! GTGTCTTTGGTGTATTCCAA+TGG - chr3_3:76087537-76087556 Msa0473470:CDS 40.0%
GGCTATCTTCCTGTTATTCA+AGG - chr3_3:76087715-76087734 Msa0473470:CDS 40.0%
ATGAAATCAGACGAGGAAGG+AGG + chr3_3:76085902-76085921 None:intergenic 45.0%
ACGTAAAAGCAGGGAGATGA+AGG - chr3_3:76086208-76086227 Msa0473470:CDS 45.0%
! CTCGTTCTAAACGTCACTCT+TGG + chr3_3:76086254-76086273 None:intergenic 45.0%
GAGATCGCAGCTTGAGATTA+TGG - chr3_3:76086271-76086290 Msa0473470:intron 45.0%
! AGGAAATAGGATAGTGGTGG+TGG - chr3_3:76086717-76086736 Msa0473470:intron 45.0%
! GGAAATAGGATAGTGGTGGT+GGG - chr3_3:76086718-76086737 Msa0473470:intron 45.0%
!! ATATGCTAGTTGATGGAGGG+GGG - chr3_3:76086787-76086806 Msa0473470:intron 45.0%
ACACGCAAGCTCAACAAGTA+GGG + chr3_3:76086965-76086984 None:intergenic 45.0%
TACACGCAAGCTCAACAAGT+AGG + chr3_3:76086966-76086985 None:intergenic 45.0%
TGAGCTTGCGTGTATATGTG+TGG - chr3_3:76086972-76086991 Msa0473470:intron 45.0%
AGCTAGTCCCCCGTAAATAA+TGG - chr3_3:76087142-76087161 Msa0473470:intron 45.0%
AAGAGAGAGATTCTGTGCAC+TGG - chr3_3:76087217-76087236 Msa0473470:intron 45.0%
AGAGAGAGATTCTGTGCACT+GGG - chr3_3:76087218-76087237 Msa0473470:intron 45.0%
GGACTGTTGTTGATCTCATC+AGG - chr3_3:76087239-76087258 Msa0473470:intron 45.0%
CTGTTGTTGATCTCATCAGG+TGG - chr3_3:76087242-76087261 Msa0473470:intron 45.0%
AAGTGTTCAGGTGAAGGATG+TGG - chr3_3:76087408-76087427 Msa0473470:intron 45.0%
ATGTGGTGTGAAGAAAAGGG+TGG - chr3_3:76087425-76087444 Msa0473470:intron 45.0%
GTGTGAAGAAAAGGGTGGAA+AGG - chr3_3:76087430-76087449 Msa0473470:intron 45.0%
AGAAAAGGGTGGAAAGGGAT+AGG - chr3_3:76087436-76087455 Msa0473470:intron 45.0%
GAAAAGGGTGGAAAGGGATA+GGG - chr3_3:76087437-76087456 Msa0473470:intron 45.0%
GGAATACACCAAAGACACTG+GGG + chr3_3:76087535-76087554 None:intergenic 45.0%
TGGAAGAAGAGGTTGCAGAA+GGG + chr3_3:76087590-76087609 None:intergenic 45.0%
TTGGAAGAAGAGGTTGCAGA+AGG + chr3_3:76087591-76087610 None:intergenic 45.0%
ATGAAATCAGACGAGGAAGG+AGG + chr3_3:76085902-76085921 None:intergenic 45.0%
ACGTAAAAGCAGGGAGATGA+AGG - chr3_3:76086208-76086227 Msa0473470:CDS 45.0%
! CTCGTTCTAAACGTCACTCT+TGG + chr3_3:76086254-76086273 None:intergenic 45.0%
GAGATCGCAGCTTGAGATTA+TGG - chr3_3:76086271-76086290 Msa0473470:intron 45.0%
! AGGAAATAGGATAGTGGTGG+TGG - chr3_3:76086717-76086736 Msa0473470:intron 45.0%
! GGAAATAGGATAGTGGTGGT+GGG - chr3_3:76086718-76086737 Msa0473470:intron 45.0%
!! ATATGCTAGTTGATGGAGGG+GGG - chr3_3:76086787-76086806 Msa0473470:intron 45.0%
ACACGCAAGCTCAACAAGTA+GGG + chr3_3:76086965-76086984 None:intergenic 45.0%
TACACGCAAGCTCAACAAGT+AGG + chr3_3:76086966-76086985 None:intergenic 45.0%
TGAGCTTGCGTGTATATGTG+TGG - chr3_3:76086972-76086991 Msa0473470:intron 45.0%
AGCTAGTCCCCCGTAAATAA+TGG - chr3_3:76087142-76087161 Msa0473470:intron 45.0%
AAGAGAGAGATTCTGTGCAC+TGG - chr3_3:76087217-76087236 Msa0473470:intron 45.0%
AGAGAGAGATTCTGTGCACT+GGG - chr3_3:76087218-76087237 Msa0473470:intron 45.0%
GGACTGTTGTTGATCTCATC+AGG - chr3_3:76087239-76087258 Msa0473470:intron 45.0%
CTGTTGTTGATCTCATCAGG+TGG - chr3_3:76087242-76087261 Msa0473470:intron 45.0%
AAGTGTTCAGGTGAAGGATG+TGG - chr3_3:76087408-76087427 Msa0473470:intron 45.0%
ATGTGGTGTGAAGAAAAGGG+TGG - chr3_3:76087425-76087444 Msa0473470:intron 45.0%
GTGTGAAGAAAAGGGTGGAA+AGG - chr3_3:76087430-76087449 Msa0473470:intron 45.0%
AGAAAAGGGTGGAAAGGGAT+AGG - chr3_3:76087436-76087455 Msa0473470:intron 45.0%
GAAAAGGGTGGAAAGGGATA+GGG - chr3_3:76087437-76087456 Msa0473470:intron 45.0%
GGAATACACCAAAGACACTG+GGG + chr3_3:76087535-76087554 None:intergenic 45.0%
TGGAAGAAGAGGTTGCAGAA+GGG + chr3_3:76087590-76087609 None:intergenic 45.0%
TTGGAAGAAGAGGTTGCAGA+AGG + chr3_3:76087591-76087610 None:intergenic 45.0%
AAATCAGACGAGGAAGGAGG+AGG + chr3_3:76085899-76085918 None:intergenic 50.0%
!! ATAGTGGTGGTGGGTCTGAT+TGG - chr3_3:76086727-76086746 Msa0473470:intron 50.0%
!! GGACTAGCTAGCTAGCAAGT+GGG + chr3_3:76087131-76087150 None:intergenic 50.0%
GGGTGCAGTATGAATTGCAG+GGG + chr3_3:76087515-76087534 None:intergenic 50.0%
GGGGTGCAGTATGAATTGCA+GGG + chr3_3:76087516-76087535 None:intergenic 50.0%
TGGGGTGCAGTATGAATTGC+AGG + chr3_3:76087517-76087536 None:intergenic 50.0%
ATACTGCACCCCAGTGTCTT+TGG - chr3_3:76087524-76087543 Msa0473470:intron 50.0%
CCATTCATTGGAGGTCCCAT+TGG + chr3_3:76087556-76087575 None:intergenic 50.0%
CCAATGGGACCTCCAATGAA+TGG - chr3_3:76087553-76087572 Msa0473470:CDS 50.0%
CTAGGAAGGTCTGATCGAGT+TGG - chr3_3:76087681-76087700 Msa0473470:CDS 50.0%
ATATCCTTAACCAGTGCCCC+GGG + chr3_3:76087759-76087778 None:intergenic 50.0%
CATATCCTTAACCAGTGCCC+CGG + chr3_3:76087760-76087779 None:intergenic 50.0%
AAATCAGACGAGGAAGGAGG+AGG + chr3_3:76085899-76085918 None:intergenic 50.0%
!! ATAGTGGTGGTGGGTCTGAT+TGG - chr3_3:76086727-76086746 Msa0473470:intron 50.0%
!! GGACTAGCTAGCTAGCAAGT+GGG + chr3_3:76087131-76087150 None:intergenic 50.0%
GGGTGCAGTATGAATTGCAG+GGG + chr3_3:76087515-76087534 None:intergenic 50.0%
GGGGTGCAGTATGAATTGCA+GGG + chr3_3:76087516-76087535 None:intergenic 50.0%
TGGGGTGCAGTATGAATTGC+AGG + chr3_3:76087517-76087536 None:intergenic 50.0%
ATACTGCACCCCAGTGTCTT+TGG - chr3_3:76087524-76087543 Msa0473470:intron 50.0%
CCATTCATTGGAGGTCCCAT+TGG + chr3_3:76087556-76087575 None:intergenic 50.0%
CCAATGGGACCTCCAATGAA+TGG - chr3_3:76087553-76087572 Msa0473470:CDS 50.0%
CTAGGAAGGTCTGATCGAGT+TGG - chr3_3:76087681-76087700 Msa0473470:CDS 50.0%
ATATCCTTAACCAGTGCCCC+GGG + chr3_3:76087759-76087778 None:intergenic 50.0%
CATATCCTTAACCAGTGCCC+CGG + chr3_3:76087760-76087779 None:intergenic 50.0%
!! GGGACTAGCTAGCTAGCAAG+TGG + chr3_3:76087132-76087151 None:intergenic 55.0%
CTGCTGTGGCCATTCATTGG+AGG + chr3_3:76087565-76087584 None:intergenic 55.0%
! GTGCTGCTGTGGCCATTCAT+TGG + chr3_3:76087568-76087587 None:intergenic 55.0%
GAAATGTTAACCGGTGCCCC+CGG - chr3_3:76087738-76087757 Msa0473470:CDS 55.0%
AAATGTTAACCGGTGCCCCC+GGG - chr3_3:76087739-76087758 Msa0473470:CDS 55.0%
TATCCTTAACCAGTGCCCCG+GGG + chr3_3:76087758-76087777 None:intergenic 55.0%
!! GGGACTAGCTAGCTAGCAAG+TGG + chr3_3:76087132-76087151 None:intergenic 55.0%
CTGCTGTGGCCATTCATTGG+AGG + chr3_3:76087565-76087584 None:intergenic 55.0%
! GTGCTGCTGTGGCCATTCAT+TGG + chr3_3:76087568-76087587 None:intergenic 55.0%
GAAATGTTAACCGGTGCCCC+CGG - chr3_3:76087738-76087757 Msa0473470:CDS 55.0%
AAATGTTAACCGGTGCCCCC+GGG - chr3_3:76087739-76087758 Msa0473470:CDS 55.0%
TATCCTTAACCAGTGCCCCG+GGG + chr3_3:76087758-76087777 None:intergenic 55.0%
!! GTTGCAGAAGGGTGCTGCTG+TGG + chr3_3:76087579-76087598 None:intergenic 60.0%
AATGTTAACCGGTGCCCCCG+GGG - chr3_3:76087740-76087759 Msa0473470:CDS 60.0%
ATCCTTAACCAGTGCCCCGG+GGG + chr3_3:76087757-76087776 None:intergenic 60.0%
!! GTTGCAGAAGGGTGCTGCTG+TGG + chr3_3:76087579-76087598 None:intergenic 60.0%
AATGTTAACCGGTGCCCCCG+GGG - chr3_3:76087740-76087759 Msa0473470:CDS 60.0%
ATCCTTAACCAGTGCCCCGG+GGG + chr3_3:76087757-76087776 None:intergenic 60.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr3_3:76087752-76087771 Msa0473470:CDS 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr3_3:76087752-76087771 Msa0473470:CDS 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr3_3:76087751-76087770 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr3_3:76087751-76087770 None:intergenic 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr3_3:76087746-76087765 Msa0473470:CDS 80.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr3_3:76087746-76087765 Msa0473470:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76085845 76087786 76085845 ID=Msa0473470;Name=Msa0473470
chr3_3 mRNA 76085845 76087786 76085845 ID=Msa0473470-mRNA-1;Parent=Msa0473470;Name=Msa0473470-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|172|208
chr3_3 exon 76085845 76086233 76085845 ID=Msa0473470-mRNA-1:exon:19874;Parent=Msa0473470-mRNA-1
chr3_3 exon 76087277 76087426 76087277 ID=Msa0473470-mRNA-1:exon:19873;Parent=Msa0473470-mRNA-1
chr3_3 exon 76087527 76087786 76087527 ID=Msa0473470-mRNA-1:exon:19872;Parent=Msa0473470-mRNA-1
chr3_3 CDS 76087527 76087786 76087527 ID=Msa0473470-mRNA-1:cds;Parent=Msa0473470-mRNA-1
chr3_3 CDS 76087277 76087426 76087277 ID=Msa0473470-mRNA-1:cds;Parent=Msa0473470-mRNA-1
chr3_3 CDS 76086017 76086233 76086017 ID=Msa0473470-mRNA-1:cds;Parent=Msa0473470-mRNA-1
chr3_3 three_prime_UTR 76085845 76086016 76085845 ID=Msa0473470-mRNA-1:three_prime_utr;Parent=Msa0473470-mRNA-1
Gene Sequence

>Msa0473470

ATGTATTTTGGAAACCCTAATTCTAACCCTTATCACAATAATAATATATCTCCTCCTCCTTCCTCGTCTGATTTCATTAATTTATCTGATTATCTGGTGCTGGATGATGAACATCAAGAATGTTGGTCACAAAGTACAGGAACTGAATCATCAGACAACAAGGCACCTTCCACCACCATTGATATTAATGTCATCAATCAAGGATTAATTTGTGATGAAATTGAAACCTCTACCAACAAGAACAATAACATGATGCAAGTGAAACGTAAAAGCAGGGAGATGAAGGAAAATACAGTAGACGTGAGCCCAAGAGTGACGTTTAGAACGAGATCGCAGCTTGAGATTATGGATGATGGATTCAAATGGAGGAAGTATGGAAAGAAGTCTGTCAAGAATAGTCCATACCCAAGGAACTACTACAAGTGTTCAGGTGAAGGATGTGGTGTGAAGAAAAGGGTGGAAAGGGATAGGGAAGATTCAAGCTATGTGCTAACAAGCTATGAAGGTGTTCACAATCATGAAAGCCCCTGCAATTCATACTGCACCCCAGTGTCTTTGGTGTATTCCAATGGGACCTCCAATGAATGGCCACAGCAGCACCCTTCTGCAACCTCTTCTTCCAATTAA
Protein sequence

>Msa0473470

MYFGNPNSNPYHNNNISPPPSSSDFINLSDYLVLDDEHQECWSQSTGTESSDNKAPSTTIDINVINQGLICDEIETSTNKNNNMMQVKRKSREMKENTVDVSPRVTFRTRSQLEIMDDGFKWRKYGKKSVKNSPYPRNYYKCSGEGCGVKKRVERDREDSSYVLTSYEGVHNHESPCNSYCTPVSLVYSNGTSNEWPQQHPSATSSSN*