Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428030 | AES96022.1 | 66.667 | 192 | 31 | 2 | 19 | 195 | 30 | 203 | 6.79e-65 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428030 | sp|P93024|ARFE_ARATH | 39.877 | 163 | 61 | 4 | 3 | 146 | 243 | 387 | 4.69e-22 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428030 | G7JXN7 | 66.667 | 192 | 31 | 2 | 19 | 195 | 30 | 203 | 3.24e-65 | 217 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0428030 | Msa0428070 | 0.925298 | 2.216770e-90 | -8.615850e-47 |
| Msa0428030 | Msa1407600 | 0.800529 | 1.380915e-48 | -8.615850e-47 |
| Msa0428030 | Msa1424760 | 0.896024 | 5.482355e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428030 | MtrunA17_Chr1g0156321 | 39.153 | 189 | 73 | 5 | 3 | 167 | 231 | 401 | 1.27e-23 | 99.0 |
| Msa0428030 | MtrunA17_Chr3g0109391 | 39.286 | 112 | 54 | 2 | 7 | 118 | 219 | 316 | 9.84e-14 | 70.1 |
| Msa0428030 | MtrunA17_Chr2g0285461 | 30.968 | 155 | 78 | 3 | 7 | 146 | 216 | 356 | 1.28e-13 | 69.7 |
| Msa0428030 | MtrunA17_Chr4g0070181 | 34.969 | 163 | 68 | 5 | 3 | 146 | 211 | 354 | 2.44e-13 | 68.9 |
| Msa0428030 | MtrunA17_Chr5g0433301 | 32.903 | 155 | 75 | 4 | 7 | 146 | 217 | 357 | 3.12e-13 | 68.6 |
| Msa0428030 | MtrunA17_Chr2g0301251 | 32.515 | 163 | 72 | 6 | 3 | 146 | 211 | 354 | 4.26e-11 | 62.4 |
| Msa0428030 | MtrunA17_Chr8g0376771 | 34.821 | 112 | 59 | 1 | 7 | 118 | 215 | 312 | 4.91e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428030 | AT1G19850.1 | 39.877 | 163 | 61 | 4 | 3 | 146 | 243 | 387 | 4.77e-23 | 97.8 |
| Msa0428030 | AT1G19850.2 | 39.877 | 163 | 61 | 4 | 3 | 146 | 232 | 376 | 5.38e-23 | 97.8 |
| Msa0428030 | AT1G19220.1 | 37.736 | 159 | 69 | 6 | 3 | 146 | 211 | 354 | 1.25e-13 | 70.5 |
| Msa0428030 | AT1G30330.1 | 30.323 | 155 | 79 | 3 | 7 | 146 | 216 | 356 | 2.33e-12 | 66.6 |
| Msa0428030 | AT1G30330.3 | 30.323 | 155 | 79 | 3 | 7 | 146 | 218 | 358 | 2.40e-12 | 66.6 |
| Msa0428030 | AT1G30330.2 | 30.323 | 155 | 79 | 3 | 7 | 146 | 218 | 358 | 2.40e-12 | 66.6 |
| Msa0428030 | AT5G37020.3 | 37.069 | 116 | 59 | 2 | 3 | 118 | 116 | 217 | 7.91e-12 | 65.1 |
| Msa0428030 | AT5G37020.2 | 37.069 | 116 | 59 | 2 | 3 | 118 | 211 | 312 | 7.92e-12 | 65.1 |
| Msa0428030 | AT5G37020.1 | 37.069 | 116 | 59 | 2 | 3 | 118 | 211 | 312 | 8.16e-12 | 65.1 |
| Msa0428030 | AT5G20730.2 | 32.075 | 159 | 78 | 4 | 3 | 146 | 212 | 355 | 3.61e-11 | 63.2 |
| Msa0428030 | AT5G20730.3 | 32.704 | 159 | 78 | 5 | 3 | 146 | 212 | 356 | 7.97e-11 | 62.0 |
| Msa0428030 | AT5G20730.1 | 32.704 | 159 | 78 | 5 | 3 | 146 | 212 | 356 | 8.06e-11 | 62.0 |
Find 52 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTTACTCTTGTGTTTA+TGG | 0.105939 | 3_2:-78764966 | Msa0428030:CDS |
| TTAACCTTTCTGCAGCGATA+TGG | 0.289310 | 3_2:-78766350 | Msa0428030:intron |
| ATTCTTACTCTTGTGTTTAT+GGG | 0.295461 | 3_2:-78764965 | Msa0428030:CDS |
| GTCCCAAGAACAAACTCTAT+TGG | 0.319310 | 3_2:+78766218 | None:intergenic |
| AACCCAATAGAGTTTGTTCT+TGG | 0.329589 | 3_2:-78766221 | Msa0428030:CDS |
| TCCCAAGAACAAACTCTATT+GGG | 0.339053 | 3_2:+78766219 | None:intergenic |
| AGAAATCACAATTGCTAGTT+GGG | 0.361412 | 3_2:-78766887 | Msa0428030:CDS |
| CTTCGACATCGAGTTCTAAA+AGG | 0.371968 | 3_2:-78766176 | Msa0428030:CDS |
| TCTAAAAGGCCGTTACAATC+TGG | 0.375045 | 3_2:-78766162 | Msa0428030:CDS |
| ACGTGGGACAAGCCAGGTTG+TGG | 0.388913 | 3_2:-78766250 | Msa0428030:CDS |
| AGCAGCAACAAGCGCATCAA+TGG | 0.405726 | 3_2:+78766800 | None:intergenic |
| AAATATTCCTTGGATACAAC+AGG | 0.411977 | 3_2:+78766759 | None:intergenic |
| ATAATAAATTAACCTTGGTT+AGG | 0.413125 | 3_2:+78766718 | None:intergenic |
| GCAGCAACAAGCGCATCAAT+GGG | 0.418539 | 3_2:+78766801 | None:intergenic |
| TAACCTTTCTGCAGCGATAT+GGG | 0.426316 | 3_2:-78766349 | Msa0428030:intron |
| AGAGCAAATTAAATATTCCT+TGG | 0.437132 | 3_2:+78766749 | None:intergenic |
| TTTGTCTCTCAATTGTCCAT+TGG | 0.440203 | 3_2:-78766574 | Msa0428030:CDS |
| CCGTTACAATCTGGATTGTC+TGG | 0.443879 | 3_2:-78766153 | Msa0428030:intron |
| CGTGGGACAAGCCAGGTTGT+GGG | 0.450757 | 3_2:-78766249 | Msa0428030:CDS |
| GTGTTTATGGGATGTCTCAC+GGG | 0.456735 | 3_2:-78764953 | Msa0428030:CDS |
| CACAATTGCTAGTTGGGGTC+AGG | 0.457568 | 3_2:-78766881 | Msa0428030:CDS |
| GAGAAATCACAATTGCTAGT+TGG | 0.465725 | 3_2:-78766888 | Msa0428030:CDS |
| TCTCAACTACACTACTATCT+TGG | 0.467867 | 3_2:+78765936 | None:intergenic |
| TGTGTTTATGGGATGTCTCA+CGG | 0.468124 | 3_2:-78764954 | Msa0428030:CDS |
| ACCCAATAGAGTTTGTTCTT+GGG | 0.481411 | 3_2:-78766220 | Msa0428030:CDS |
| AGATAGTAGTGTAGTTGAGA+TGG | 0.502287 | 3_2:-78765933 | Msa0428030:CDS |
| TAAGATGATGACTTCATCAA+TGG | 0.510939 | 3_2:+78764926 | None:intergenic |
| TCTGTTTCCTGTTGTATCCA+AGG | 0.517003 | 3_2:-78766766 | Msa0428030:CDS |
| AAATTAACCTTGGTTAGGCA+AGG | 0.536383 | 3_2:+78766723 | None:intergenic |
| AGTGTAGTTGAGATGGAAGG+TGG | 0.537688 | 3_2:-78765926 | Msa0428030:intron |
| AGTAGTGTAGTTGAGATGGA+AGG | 0.544496 | 3_2:-78765929 | Msa0428030:CDS |
| TTGATGATACCATTGAAGTC+GGG | 0.551346 | 3_2:-78764892 | Msa0428030:CDS |
| ATGAAGTCATCATCTTATGA+AGG | 0.553019 | 3_2:-78764920 | Msa0428030:CDS |
| CTCTAAGCCTTGCCTAACCA+AGG | 0.553634 | 3_2:-78766730 | Msa0428030:intron |
| ATGAAATGTCAATTGTTACA+AGG | 0.556474 | 3_2:-78766914 | Msa0428030:exon |
| TGGGACAAGCCAGGTTGTGG+GGG | 0.556761 | 3_2:-78766247 | Msa0428030:CDS |
| AAGTGTACGTGGGACAAGCC+AGG | 0.556937 | 3_2:-78766256 | Msa0428030:CDS |
| GCATTGTTGTATGTTGAAAG+TGG | 0.558663 | 3_2:+78766601 | None:intergenic |
| TTAGCAGAAAGGACTGATGA+TGG | 0.562029 | 3_2:+78766831 | None:intergenic |
| ATTGATGATACCATTGAAGT+CGG | 0.565691 | 3_2:-78764893 | Msa0428030:CDS |
| TGGGCATATTATTAGCAGAA+AGG | 0.573682 | 3_2:+78766820 | None:intergenic |
| CAAAAGCATTTGATACGCGC+TGG | 0.577963 | 3_2:-78766525 | Msa0428030:intron |
| GGAATGCATCCCGACTTCAA+TGG | 0.601024 | 3_2:+78764883 | None:intergenic |
| GTGGGACAAGCCAGGTTGTG+GGG | 0.605722 | 3_2:-78766248 | Msa0428030:CDS |
| TGAAATGTCAATTGTTACAA+GGG | 0.606701 | 3_2:-78766913 | Msa0428030:exon |
| CATATCATATCTCAATCCAA+TGG | 0.607038 | 3_2:+78766558 | None:intergenic |
| GGGACAAGCCAGGTTGTGGG+GGG | 0.611452 | 3_2:-78766246 | Msa0428030:CDS |
| GAAATCACAATTGCTAGTTG+GGG | 0.640389 | 3_2:-78766886 | Msa0428030:CDS |
| ACATCGAGGTTAAGTGTACG+TGG | 0.649453 | 3_2:-78766267 | Msa0428030:CDS |
| CCAGACAATCCAGATTGTAA+CGG | 0.653501 | 3_2:+78766153 | None:intergenic |
| ACTCGATGTCGAAGACCGAG+AGG | 0.696816 | 3_2:+78766185 | None:intergenic |
| CATCGAGGTTAAGTGTACGT+GGG | 0.728547 | 3_2:-78766266 | Msa0428030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATAGATATATAATATA+CGG | - | chr3_2:78765337-78765356 | Msa0428030:intron | 10.0% |
| !!! | TTTTTTTTCTTCTTATATAA+AGG | - | chr3_2:78766709-78766728 | Msa0428030:intron | 10.0% |
| !! | TTACATAGATATATAATATA+CGG | - | chr3_2:78765337-78765356 | Msa0428030:intron | 10.0% |
| !!! | TTTTTTTTCTTCTTATATAA+AGG | - | chr3_2:78766709-78766728 | Msa0428030:intron | 10.0% |
| !! | TTGTTATAATAAATTAACCT+TGG | + | chr3_2:78765068-78765087 | None:intergenic | 15.0% |
| !!! | TTATAACAAATACAAACTTT+TGG | - | chr3_2:78765079-78765098 | Msa0428030:intron | 15.0% |
| !!! | ATATTTTCTTTACTTTCTTA+AGG | - | chr3_2:78765649-78765668 | Msa0428030:intron | 15.0% |
| !!! | CAATATTATTTTGTAACAAT+TGG | + | chr3_2:78766048-78766067 | None:intergenic | 15.0% |
| !! | TTGTTATAATAAATTAACCT+TGG | + | chr3_2:78765068-78765087 | None:intergenic | 15.0% |
| !!! | TTATAACAAATACAAACTTT+TGG | - | chr3_2:78765079-78765098 | Msa0428030:intron | 15.0% |
| !!! | ATATTTTCTTTACTTTCTTA+AGG | - | chr3_2:78765649-78765668 | Msa0428030:intron | 15.0% |
| !!! | CAATATTATTTTGTAACAAT+TGG | + | chr3_2:78766048-78766067 | None:intergenic | 15.0% |
| !! | ATAATAAATTAACCTTGGTT+AGG | + | chr3_2:78765063-78765082 | None:intergenic | 20.0% |
| !! | ATTGAATTGTAATACAAAAG+AGG | + | chr3_2:78766455-78766474 | None:intergenic | 20.0% |
| !!! | TTTTCTAATATTTAGTATCG+AGG | - | chr3_2:78766620-78766639 | Msa0428030:CDS | 20.0% |
| !! | TCTTATATAAAGGTAATGTA+AGG | - | chr3_2:78766719-78766738 | Msa0428030:intron | 20.0% |
| !! | TTCAATTGATCAATTGATAA+TGG | - | chr3_2:78766758-78766777 | Msa0428030:CDS | 20.0% |
| !! | ATAATAAATTAACCTTGGTT+AGG | + | chr3_2:78765063-78765082 | None:intergenic | 20.0% |
| !! | ATTGAATTGTAATACAAAAG+AGG | + | chr3_2:78766455-78766474 | None:intergenic | 20.0% |
| !!! | TTTTCTAATATTTAGTATCG+AGG | - | chr3_2:78766620-78766639 | Msa0428030:CDS | 20.0% |
| !! | TCTTATATAAAGGTAATGTA+AGG | - | chr3_2:78766719-78766738 | Msa0428030:intron | 20.0% |
| !! | TTCAATTGATCAATTGATAA+TGG | - | chr3_2:78766758-78766777 | Msa0428030:CDS | 20.0% |
| ! | ATGAAATGTCAATTGTTACA+AGG | - | chr3_2:78764864-78764883 | Msa0428030:CDS | 25.0% |
| ! | TGAAATGTCAATTGTTACAA+GGG | - | chr3_2:78764865-78764884 | Msa0428030:CDS | 25.0% |
| ! | AGAGCAAATTAAATATTCCT+TGG | + | chr3_2:78765032-78765051 | None:intergenic | 25.0% |
| !! | CAAATACAAACTTTTGGATT+AGG | - | chr3_2:78765085-78765104 | Msa0428030:intron | 25.0% |
| ! | ATTTCTGAACTATTGAACTT+TGG | - | chr3_2:78765284-78765303 | Msa0428030:intron | 25.0% |
| ! | GTTATATTTAAACTGAGAAC+TGG | - | chr3_2:78765746-78765765 | Msa0428030:intron | 25.0% |
| !!! | AAGTCATATTTTGAGTTAGA+TGG | + | chr3_2:78766583-78766602 | None:intergenic | 25.0% |
| !! | AGCATTTTATTCAAATGTTC+AGG | - | chr3_2:78766783-78766802 | Msa0428030:CDS | 25.0% |
| ! | ATTCTTACTCTTGTGTTTAT+GGG | - | chr3_2:78766813-78766832 | Msa0428030:CDS | 25.0% |
| ! | GTAACAATTGACATTTCATA+TGG | + | chr3_2:78764863-78764882 | None:intergenic | 25.0% |
| ! | ATGAAATGTCAATTGTTACA+AGG | - | chr3_2:78764864-78764883 | Msa0428030:CDS | 25.0% |
| ! | TGAAATGTCAATTGTTACAA+GGG | - | chr3_2:78764865-78764884 | Msa0428030:CDS | 25.0% |
| ! | AGAGCAAATTAAATATTCCT+TGG | + | chr3_2:78765032-78765051 | None:intergenic | 25.0% |
| !! | CAAATACAAACTTTTGGATT+AGG | - | chr3_2:78765085-78765104 | Msa0428030:intron | 25.0% |
| ! | ATTTCTGAACTATTGAACTT+TGG | - | chr3_2:78765284-78765303 | Msa0428030:intron | 25.0% |
| ! | GTTATATTTAAACTGAGAAC+TGG | - | chr3_2:78765746-78765765 | Msa0428030:intron | 25.0% |
| !!! | AAGTCATATTTTGAGTTAGA+TGG | + | chr3_2:78766583-78766602 | None:intergenic | 25.0% |
| !! | AGCATTTTATTCAAATGTTC+AGG | - | chr3_2:78766783-78766802 | Msa0428030:CDS | 25.0% |
| ! | ATTCTTACTCTTGTGTTTAT+GGG | - | chr3_2:78766813-78766832 | Msa0428030:CDS | 25.0% |
| AGAAATCACAATTGCTAGTT+GGG | - | chr3_2:78764891-78764910 | Msa0428030:CDS | 30.0% | |
| AAATATTCCTTGGATACAAC+AGG | + | chr3_2:78765022-78765041 | None:intergenic | 30.0% | |
| CATATCATATCTCAATCCAA+TGG | + | chr3_2:78765223-78765242 | None:intergenic | 30.0% | |
| !!! | TGTAGCATCTTTTTTTGCTA+AGG | - | chr3_2:78765314-78765333 | Msa0428030:intron | 30.0% |
| ! | ATGTTTTTCCATCTTGAATC+TGG | + | chr3_2:78765495-78765514 | None:intergenic | 30.0% |
| ! | AGAGTTGATTATAGTGAAAG+AGG | + | chr3_2:78765928-78765947 | None:intergenic | 30.0% |
| ACTATAATCAACTCTGTTAG+TGG | - | chr3_2:78765933-78765952 | Msa0428030:CDS | 30.0% | |
| CTATAATCAACTCTGTTAGT+GGG | - | chr3_2:78765934-78765953 | Msa0428030:CDS | 30.0% | |
| CTATCAATCGAATTTGATGT+CGG | + | chr3_2:78766150-78766169 | None:intergenic | 30.0% | |
| ATGTTCATTCGAATTTCAAC+TGG | + | chr3_2:78766272-78766291 | None:intergenic | 30.0% | |
| !!! | TGAGAGATATGTTTTTTGTG+AGG | - | chr3_2:78766390-78766409 | Msa0428030:intron | 30.0% |
| ! | AACCAGATTTGAGTTTACTT+TGG | - | chr3_2:78766501-78766520 | Msa0428030:intron | 30.0% |
| CATTCTTACTCTTGTGTTTA+TGG | - | chr3_2:78766812-78766831 | Msa0428030:CDS | 30.0% | |
| TAAGATGATGACTTCATCAA+TGG | + | chr3_2:78766855-78766874 | None:intergenic | 30.0% | |
| ATGAAGTCATCATCTTATGA+AGG | - | chr3_2:78766858-78766877 | Msa0428030:CDS | 30.0% | |
| ! | ATTGATGATACCATTGAAGT+CGG | - | chr3_2:78766885-78766904 | Msa0428030:CDS | 30.0% |
| AGAAATCACAATTGCTAGTT+GGG | - | chr3_2:78764891-78764910 | Msa0428030:CDS | 30.0% | |
| AAATATTCCTTGGATACAAC+AGG | + | chr3_2:78765022-78765041 | None:intergenic | 30.0% | |
| CATATCATATCTCAATCCAA+TGG | + | chr3_2:78765223-78765242 | None:intergenic | 30.0% | |
| !!! | TGTAGCATCTTTTTTTGCTA+AGG | - | chr3_2:78765314-78765333 | Msa0428030:intron | 30.0% |
| ! | ATGTTTTTCCATCTTGAATC+TGG | + | chr3_2:78765495-78765514 | None:intergenic | 30.0% |
| ! | AGAGTTGATTATAGTGAAAG+AGG | + | chr3_2:78765928-78765947 | None:intergenic | 30.0% |
| ACTATAATCAACTCTGTTAG+TGG | - | chr3_2:78765933-78765952 | Msa0428030:CDS | 30.0% | |
| CTATAATCAACTCTGTTAGT+GGG | - | chr3_2:78765934-78765953 | Msa0428030:CDS | 30.0% | |
| CTATCAATCGAATTTGATGT+CGG | + | chr3_2:78766150-78766169 | None:intergenic | 30.0% | |
| ATGTTCATTCGAATTTCAAC+TGG | + | chr3_2:78766272-78766291 | None:intergenic | 30.0% | |
| !!! | TGAGAGATATGTTTTTTGTG+AGG | - | chr3_2:78766390-78766409 | Msa0428030:intron | 30.0% |
| ! | AACCAGATTTGAGTTTACTT+TGG | - | chr3_2:78766501-78766520 | Msa0428030:intron | 30.0% |
| CATTCTTACTCTTGTGTTTA+TGG | - | chr3_2:78766812-78766831 | Msa0428030:CDS | 30.0% | |
| TAAGATGATGACTTCATCAA+TGG | + | chr3_2:78766855-78766874 | None:intergenic | 30.0% | |
| ATGAAGTCATCATCTTATGA+AGG | - | chr3_2:78766858-78766877 | Msa0428030:CDS | 30.0% | |
| ! | ATTGATGATACCATTGAAGT+CGG | - | chr3_2:78766885-78766904 | Msa0428030:CDS | 30.0% |
| GAGAAATCACAATTGCTAGT+TGG | - | chr3_2:78764890-78764909 | Msa0428030:CDS | 35.0% | |
| GAAATCACAATTGCTAGTTG+GGG | - | chr3_2:78764892-78764911 | Msa0428030:CDS | 35.0% | |
| TGGGCATATTATTAGCAGAA+AGG | + | chr3_2:78764961-78764980 | None:intergenic | 35.0% | |
| AAATTAACCTTGGTTAGGCA+AGG | + | chr3_2:78765058-78765077 | None:intergenic | 35.0% | |
| GCATTGTTGTATGTTGAAAG+TGG | + | chr3_2:78765180-78765199 | None:intergenic | 35.0% | |
| TTTGTCTCTCAATTGTCCAT+TGG | - | chr3_2:78765204-78765223 | Msa0428030:intron | 35.0% | |
| TTCAAGATGGAAAAACATCG+AGG | - | chr3_2:78765497-78765516 | Msa0428030:intron | 35.0% | |
| ! | AACCCAATAGAGTTTGTTCT+TGG | - | chr3_2:78765557-78765576 | Msa0428030:intron | 35.0% |
| ! | ACCCAATAGAGTTTGTTCTT+GGG | - | chr3_2:78765558-78765577 | Msa0428030:intron | 35.0% |
| TCCCAAGAACAAACTCTATT+GGG | + | chr3_2:78765562-78765581 | None:intergenic | 35.0% | |
| TCTCAACTACACTACTATCT+TGG | + | chr3_2:78765845-78765864 | None:intergenic | 35.0% | |
| AGATAGTAGTGTAGTTGAGA+TGG | - | chr3_2:78765845-78765864 | Msa0428030:intron | 35.0% | |
| CGACATCAAATTCGATTGAT+AGG | - | chr3_2:78766148-78766167 | Msa0428030:intron | 35.0% | |
| TTCGATTGATAGGAATCTGA+AGG | - | chr3_2:78766158-78766177 | Msa0428030:CDS | 35.0% | |
| CTGAAGGCAATAACAACTTA+AGG | - | chr3_2:78766174-78766193 | Msa0428030:CDS | 35.0% | |
| GACCAAAGTAAACTCAAATC+TGG | + | chr3_2:78766506-78766525 | None:intergenic | 35.0% | |
| ! | ATGGTTACTTGATAGTCTAC+GGG | + | chr3_2:78766564-78766583 | None:intergenic | 35.0% |
| ! | GATGGTTACTTGATAGTCTA+CGG | + | chr3_2:78766565-78766584 | None:intergenic | 35.0% |
| TCAATTGAATGTGTGATCAG+TGG | + | chr3_2:78766747-78766766 | None:intergenic | 35.0% | |
| ! | TTGATGATACCATTGAAGTC+GGG | - | chr3_2:78766886-78766905 | Msa0428030:CDS | 35.0% |
| GAGAAATCACAATTGCTAGT+TGG | - | chr3_2:78764890-78764909 | Msa0428030:CDS | 35.0% | |
| GAAATCACAATTGCTAGTTG+GGG | - | chr3_2:78764892-78764911 | Msa0428030:CDS | 35.0% | |
| TGGGCATATTATTAGCAGAA+AGG | + | chr3_2:78764961-78764980 | None:intergenic | 35.0% | |
| AAATTAACCTTGGTTAGGCA+AGG | + | chr3_2:78765058-78765077 | None:intergenic | 35.0% | |
| GCATTGTTGTATGTTGAAAG+TGG | + | chr3_2:78765180-78765199 | None:intergenic | 35.0% | |
| TTTGTCTCTCAATTGTCCAT+TGG | - | chr3_2:78765204-78765223 | Msa0428030:intron | 35.0% | |
| TTCAAGATGGAAAAACATCG+AGG | - | chr3_2:78765497-78765516 | Msa0428030:intron | 35.0% | |
| ! | AACCCAATAGAGTTTGTTCT+TGG | - | chr3_2:78765557-78765576 | Msa0428030:intron | 35.0% |
| ! | ACCCAATAGAGTTTGTTCTT+GGG | - | chr3_2:78765558-78765577 | Msa0428030:intron | 35.0% |
| TCCCAAGAACAAACTCTATT+GGG | + | chr3_2:78765562-78765581 | None:intergenic | 35.0% | |
| TCTCAACTACACTACTATCT+TGG | + | chr3_2:78765845-78765864 | None:intergenic | 35.0% | |
| AGATAGTAGTGTAGTTGAGA+TGG | - | chr3_2:78765845-78765864 | Msa0428030:intron | 35.0% | |
| CGACATCAAATTCGATTGAT+AGG | - | chr3_2:78766148-78766167 | Msa0428030:intron | 35.0% | |
| TTCGATTGATAGGAATCTGA+AGG | - | chr3_2:78766158-78766177 | Msa0428030:CDS | 35.0% | |
| CTGAAGGCAATAACAACTTA+AGG | - | chr3_2:78766174-78766193 | Msa0428030:CDS | 35.0% | |
| GACCAAAGTAAACTCAAATC+TGG | + | chr3_2:78766506-78766525 | None:intergenic | 35.0% | |
| ! | ATGGTTACTTGATAGTCTAC+GGG | + | chr3_2:78766564-78766583 | None:intergenic | 35.0% |
| ! | GATGGTTACTTGATAGTCTA+CGG | + | chr3_2:78766565-78766584 | None:intergenic | 35.0% |
| TCAATTGAATGTGTGATCAG+TGG | + | chr3_2:78766747-78766766 | None:intergenic | 35.0% | |
| ! | TTGATGATACCATTGAAGTC+GGG | - | chr3_2:78766886-78766905 | Msa0428030:CDS | 35.0% |
| TTAGCAGAAAGGACTGATGA+TGG | + | chr3_2:78764950-78764969 | None:intergenic | 40.0% | |
| TCTGTTTCCTGTTGTATCCA+AGG | - | chr3_2:78765012-78765031 | Msa0428030:intron | 40.0% | |
| TTAACCTTTCTGCAGCGATA+TGG | - | chr3_2:78765428-78765447 | Msa0428030:intron | 40.0% | |
| TAACCTTTCTGCAGCGATAT+GGG | - | chr3_2:78765429-78765448 | Msa0428030:intron | 40.0% | |
| AGCGATATGGGTACTATTGT+GGG | - | chr3_2:78765441-78765460 | Msa0428030:intron | 40.0% | |
| TATTGTGGGCATCAGTGATT+TGG | - | chr3_2:78765455-78765474 | Msa0428030:intron | 40.0% | |
| ! | GTGATTTGGATCCCTTAATG+TGG | - | chr3_2:78765469-78765488 | Msa0428030:intron | 40.0% |
| CTTGAATCTGGCCACATTAA+GGG | + | chr3_2:78765483-78765502 | None:intergenic | 40.0% | |
| TCTTGAATCTGGCCACATTA+AGG | + | chr3_2:78765484-78765503 | None:intergenic | 40.0% | |
| TAATGTGGCCAGATTCAAGA+TGG | - | chr3_2:78765484-78765503 | Msa0428030:intron | 40.0% | |
| GTCCCAAGAACAAACTCTAT+TGG | + | chr3_2:78765563-78765582 | None:intergenic | 40.0% | |
| ! | GGGACATTCTTTTATCCTCT+CGG | - | chr3_2:78765578-78765597 | Msa0428030:intron | 40.0% |
| !! | CTTCGACATCGAGTTCTAAA+AGG | - | chr3_2:78765602-78765621 | Msa0428030:intron | 40.0% |
| TCTAAAAGGCCGTTACAATC+TGG | - | chr3_2:78765616-78765635 | Msa0428030:intron | 40.0% | |
| CCAGACAATCCAGATTGTAA+CGG | + | chr3_2:78765628-78765647 | None:intergenic | 40.0% | |
| AGTAGTGTAGTTGAGATGGA+AGG | - | chr3_2:78765849-78765868 | Msa0428030:intron | 40.0% | |
| AGGTGGTAGTACTCTCAAAA+TGG | - | chr3_2:78765869-78765888 | Msa0428030:intron | 40.0% | |
| TGTGTTTATGGGATGTCTCA+CGG | - | chr3_2:78766824-78766843 | Msa0428030:CDS | 40.0% | |
| ! | GGATGGTAGTTTTCTTTGGA+TGG | + | chr3_2:78766919-78766938 | None:intergenic | 40.0% |
| TTAGCAGAAAGGACTGATGA+TGG | + | chr3_2:78764950-78764969 | None:intergenic | 40.0% | |
| TCTGTTTCCTGTTGTATCCA+AGG | - | chr3_2:78765012-78765031 | Msa0428030:intron | 40.0% | |
| TTAACCTTTCTGCAGCGATA+TGG | - | chr3_2:78765428-78765447 | Msa0428030:intron | 40.0% | |
| TAACCTTTCTGCAGCGATAT+GGG | - | chr3_2:78765429-78765448 | Msa0428030:intron | 40.0% | |
| AGCGATATGGGTACTATTGT+GGG | - | chr3_2:78765441-78765460 | Msa0428030:intron | 40.0% | |
| TATTGTGGGCATCAGTGATT+TGG | - | chr3_2:78765455-78765474 | Msa0428030:intron | 40.0% | |
| ! | GTGATTTGGATCCCTTAATG+TGG | - | chr3_2:78765469-78765488 | Msa0428030:intron | 40.0% |
| CTTGAATCTGGCCACATTAA+GGG | + | chr3_2:78765483-78765502 | None:intergenic | 40.0% | |
| TCTTGAATCTGGCCACATTA+AGG | + | chr3_2:78765484-78765503 | None:intergenic | 40.0% | |
| TAATGTGGCCAGATTCAAGA+TGG | - | chr3_2:78765484-78765503 | Msa0428030:intron | 40.0% | |
| GTCCCAAGAACAAACTCTAT+TGG | + | chr3_2:78765563-78765582 | None:intergenic | 40.0% | |
| ! | GGGACATTCTTTTATCCTCT+CGG | - | chr3_2:78765578-78765597 | Msa0428030:intron | 40.0% |
| !! | CTTCGACATCGAGTTCTAAA+AGG | - | chr3_2:78765602-78765621 | Msa0428030:intron | 40.0% |
| TCTAAAAGGCCGTTACAATC+TGG | - | chr3_2:78765616-78765635 | Msa0428030:intron | 40.0% | |
| CCAGACAATCCAGATTGTAA+CGG | + | chr3_2:78765628-78765647 | None:intergenic | 40.0% | |
| AGTAGTGTAGTTGAGATGGA+AGG | - | chr3_2:78765849-78765868 | Msa0428030:intron | 40.0% | |
| AGGTGGTAGTACTCTCAAAA+TGG | - | chr3_2:78765869-78765888 | Msa0428030:intron | 40.0% | |
| TGTGTTTATGGGATGTCTCA+CGG | - | chr3_2:78766824-78766843 | Msa0428030:CDS | 40.0% | |
| ! | GGATGGTAGTTTTCTTTGGA+TGG | + | chr3_2:78766919-78766938 | None:intergenic | 40.0% |
| !! | CAAAAGCATTTGATACGCGC+TGG | - | chr3_2:78765253-78765272 | Msa0428030:intron | 45.0% |
| CAGCGATATGGGTACTATTG+TGG | - | chr3_2:78765440-78765459 | Msa0428030:intron | 45.0% | |
| ACATCGAGGTTAAGTGTACG+TGG | - | chr3_2:78765511-78765530 | Msa0428030:intron | 45.0% | |
| CATCGAGGTTAAGTGTACGT+GGG | - | chr3_2:78765512-78765531 | Msa0428030:intron | 45.0% | |
| CCGTTACAATCTGGATTGTC+TGG | - | chr3_2:78765625-78765644 | Msa0428030:intron | 45.0% | |
| AGTGTAGTTGAGATGGAAGG+TGG | - | chr3_2:78765852-78765871 | Msa0428030:intron | 45.0% | |
| GTGTTTATGGGATGTCTCAC+GGG | - | chr3_2:78766825-78766844 | Msa0428030:CDS | 45.0% | |
| !! | CAAAAGCATTTGATACGCGC+TGG | - | chr3_2:78765253-78765272 | Msa0428030:intron | 45.0% |
| CAGCGATATGGGTACTATTG+TGG | - | chr3_2:78765440-78765459 | Msa0428030:intron | 45.0% | |
| ACATCGAGGTTAAGTGTACG+TGG | - | chr3_2:78765511-78765530 | Msa0428030:intron | 45.0% | |
| CATCGAGGTTAAGTGTACGT+GGG | - | chr3_2:78765512-78765531 | Msa0428030:intron | 45.0% | |
| CCGTTACAATCTGGATTGTC+TGG | - | chr3_2:78765625-78765644 | Msa0428030:intron | 45.0% | |
| AGTGTAGTTGAGATGGAAGG+TGG | - | chr3_2:78765852-78765871 | Msa0428030:intron | 45.0% | |
| GTGTTTATGGGATGTCTCAC+GGG | - | chr3_2:78766825-78766844 | Msa0428030:CDS | 45.0% | |
| !! | CATATTTATATATATTAAAA+AGG | + | chr3_2:78765963-78765982 | None:intergenic | 5.0% |
| !! | CATATTTATATATATTAAAA+AGG | + | chr3_2:78765963-78765982 | None:intergenic | 5.0% |
| CACAATTGCTAGTTGGGGTC+AGG | - | chr3_2:78764897-78764916 | Msa0428030:CDS | 50.0% | |
| GCAGCAACAAGCGCATCAAT+GGG | + | chr3_2:78764980-78764999 | None:intergenic | 50.0% | |
| AGCAGCAACAAGCGCATCAA+TGG | + | chr3_2:78764981-78765000 | None:intergenic | 50.0% | |
| CTCTAAGCCTTGCCTAACCA+AGG | - | chr3_2:78765048-78765067 | Msa0428030:intron | 50.0% | |
| GTACCCATATCGCTGCAGAA+AGG | + | chr3_2:78765435-78765454 | None:intergenic | 50.0% | |
| GGAATGCATCCCGACTTCAA+TGG | + | chr3_2:78766898-78766917 | None:intergenic | 50.0% | |
| CACAATTGCTAGTTGGGGTC+AGG | - | chr3_2:78764897-78764916 | Msa0428030:CDS | 50.0% | |
| GCAGCAACAAGCGCATCAAT+GGG | + | chr3_2:78764980-78764999 | None:intergenic | 50.0% | |
| AGCAGCAACAAGCGCATCAA+TGG | + | chr3_2:78764981-78765000 | None:intergenic | 50.0% | |
| CTCTAAGCCTTGCCTAACCA+AGG | - | chr3_2:78765048-78765067 | Msa0428030:intron | 50.0% | |
| GTACCCATATCGCTGCAGAA+AGG | + | chr3_2:78765435-78765454 | None:intergenic | 50.0% | |
| GGAATGCATCCCGACTTCAA+TGG | + | chr3_2:78766898-78766917 | None:intergenic | 50.0% | |
| AAGTGTACGTGGGACAAGCC+AGG | - | chr3_2:78765522-78765541 | Msa0428030:intron | 55.0% | |
| ACTCGATGTCGAAGACCGAG+AGG | + | chr3_2:78765596-78765615 | None:intergenic | 55.0% | |
| AAGTGTACGTGGGACAAGCC+AGG | - | chr3_2:78765522-78765541 | Msa0428030:intron | 55.0% | |
| ACTCGATGTCGAAGACCGAG+AGG | + | chr3_2:78765596-78765615 | None:intergenic | 55.0% | |
| ACGTGGGACAAGCCAGGTTG+TGG | - | chr3_2:78765528-78765547 | Msa0428030:intron | 60.0% | |
| CGTGGGACAAGCCAGGTTGT+GGG | - | chr3_2:78765529-78765548 | Msa0428030:intron | 60.0% | |
| GTGGGACAAGCCAGGTTGTG+GGG | - | chr3_2:78765530-78765549 | Msa0428030:intron | 60.0% | |
| TGGGACAAGCCAGGTTGTGG+GGG | - | chr3_2:78765531-78765550 | Msa0428030:intron | 60.0% | |
| ! | TGGGTTTTCCCCCCACAACC+TGG | + | chr3_2:78765543-78765562 | None:intergenic | 60.0% |
| ACGTGGGACAAGCCAGGTTG+TGG | - | chr3_2:78765528-78765547 | Msa0428030:intron | 60.0% | |
| CGTGGGACAAGCCAGGTTGT+GGG | - | chr3_2:78765529-78765548 | Msa0428030:intron | 60.0% | |
| GTGGGACAAGCCAGGTTGTG+GGG | - | chr3_2:78765530-78765549 | Msa0428030:intron | 60.0% | |
| TGGGACAAGCCAGGTTGTGG+GGG | - | chr3_2:78765531-78765550 | Msa0428030:intron | 60.0% | |
| ! | TGGGTTTTCCCCCCACAACC+TGG | + | chr3_2:78765543-78765562 | None:intergenic | 60.0% |
| GGGACAAGCCAGGTTGTGGG+GGG | - | chr3_2:78765532-78765551 | Msa0428030:intron | 65.0% | |
| GGGACAAGCCAGGTTGTGGG+GGG | - | chr3_2:78765532-78765551 | Msa0428030:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 78764862 | 78766938 | 78764862 | ID=Msa0428030;Name=Msa0428030 |
| chr3_2 | mRNA | 78764862 | 78766938 | 78764862 | ID=Msa0428030-mRNA-1;Parent=Msa0428030;Name=Msa0428030-mRNA-1;_AED=0.21;_eAED=0.37;_QI=7|0|0|0.85|0.16|0.28|7|0|238 |
| chr3_2 | exon | 78766731 | 78766938 | 78766731 | ID=Msa0428030-mRNA-1:exon:21014;Parent=Msa0428030-mRNA-1 |
| chr3_2 | exon | 78766671 | 78766693 | 78766671 | ID=Msa0428030-mRNA-1:exon:21013;Parent=Msa0428030-mRNA-1 |
| chr3_2 | exon | 78766526 | 78766648 | 78766526 | ID=Msa0428030-mRNA-1:exon:21012;Parent=Msa0428030-mRNA-1 |
| chr3_2 | exon | 78766350 | 78766357 | 78766350 | ID=Msa0428030-mRNA-1:exon:21011;Parent=Msa0428030-mRNA-1 |
| chr3_2 | exon | 78766154 | 78766297 | 78766154 | ID=Msa0428030-mRNA-1:exon:21010;Parent=Msa0428030-mRNA-1 |
| chr3_2 | exon | 78765927 | 78766007 | 78765927 | ID=Msa0428030-mRNA-1:exon:21009;Parent=Msa0428030-mRNA-1 |
| chr3_2 | exon | 78764862 | 78764995 | 78764862 | ID=Msa0428030-mRNA-1:exon:21008;Parent=Msa0428030-mRNA-1 |
| chr3_2 | five_prime_UTR | 78766932 | 78766938 | 78766932 | ID=Msa0428030-mRNA-1:five_prime_utr;Parent=Msa0428030-mRNA-1 |
| chr3_2 | CDS | 78766731 | 78766931 | 78766731 | ID=Msa0428030-mRNA-1:cds;Parent=Msa0428030-mRNA-1 |
| chr3_2 | CDS | 78766671 | 78766693 | 78766671 | ID=Msa0428030-mRNA-1:cds;Parent=Msa0428030-mRNA-1 |
| chr3_2 | CDS | 78766526 | 78766648 | 78766526 | ID=Msa0428030-mRNA-1:cds;Parent=Msa0428030-mRNA-1 |
| chr3_2 | CDS | 78766350 | 78766357 | 78766350 | ID=Msa0428030-mRNA-1:cds;Parent=Msa0428030-mRNA-1 |
| chr3_2 | CDS | 78766154 | 78766297 | 78766154 | ID=Msa0428030-mRNA-1:cds;Parent=Msa0428030-mRNA-1 |
| chr3_2 | CDS | 78765927 | 78766007 | 78765927 | ID=Msa0428030-mRNA-1:cds;Parent=Msa0428030-mRNA-1 |
| chr3_2 | CDS | 78764862 | 78764995 | 78764862 | ID=Msa0428030-mRNA-1:cds;Parent=Msa0428030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
