Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428070 | AES96022.1 | 66.667 | 192 | 31 | 2 | 19 | 195 | 30 | 203 | 6.79e-65 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428070 | sp|P93024|ARFE_ARATH | 39.877 | 163 | 61 | 4 | 3 | 146 | 243 | 387 | 4.69e-22 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428070 | G7JXN7 | 66.667 | 192 | 31 | 2 | 19 | 195 | 30 | 203 | 3.24e-65 | 217 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0428030 | Msa0428070 | 0.925298 | 2.216770e-90 | -8.615850e-47 |
| Msa0428070 | Msa0474420 | 0.802924 | 4.453746e-49 | -8.615850e-47 |
| Msa0428070 | Msa0518840 | 0.806065 | 9.857904e-50 | -8.615850e-47 |
| Msa0428070 | Msa0575470 | 0.805722 | 1.163874e-49 | -8.615850e-47 |
| Msa0428070 | Msa1407600 | 0.823795 | 1.142380e-53 | -8.615850e-47 |
| Msa0428070 | Msa1424760 | 0.891488 | 3.796323e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428070 | MtrunA17_Chr1g0156321 | 39.153 | 189 | 73 | 5 | 3 | 167 | 231 | 401 | 1.27e-23 | 99.0 |
| Msa0428070 | MtrunA17_Chr3g0109391 | 39.286 | 112 | 54 | 2 | 7 | 118 | 219 | 316 | 9.84e-14 | 70.1 |
| Msa0428070 | MtrunA17_Chr2g0285461 | 30.968 | 155 | 78 | 3 | 7 | 146 | 216 | 356 | 1.28e-13 | 69.7 |
| Msa0428070 | MtrunA17_Chr4g0070181 | 34.969 | 163 | 68 | 5 | 3 | 146 | 211 | 354 | 2.44e-13 | 68.9 |
| Msa0428070 | MtrunA17_Chr5g0433301 | 32.903 | 155 | 75 | 4 | 7 | 146 | 217 | 357 | 3.12e-13 | 68.6 |
| Msa0428070 | MtrunA17_Chr2g0301251 | 32.515 | 163 | 72 | 6 | 3 | 146 | 211 | 354 | 4.26e-11 | 62.4 |
| Msa0428070 | MtrunA17_Chr8g0376771 | 34.821 | 112 | 59 | 1 | 7 | 118 | 215 | 312 | 4.91e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428070 | AT1G19850.1 | 39.877 | 163 | 61 | 4 | 3 | 146 | 243 | 387 | 4.77e-23 | 97.8 |
| Msa0428070 | AT1G19850.2 | 39.877 | 163 | 61 | 4 | 3 | 146 | 232 | 376 | 5.38e-23 | 97.8 |
| Msa0428070 | AT1G19220.1 | 37.736 | 159 | 69 | 6 | 3 | 146 | 211 | 354 | 1.25e-13 | 70.5 |
| Msa0428070 | AT1G30330.1 | 30.323 | 155 | 79 | 3 | 7 | 146 | 216 | 356 | 2.33e-12 | 66.6 |
| Msa0428070 | AT1G30330.3 | 30.323 | 155 | 79 | 3 | 7 | 146 | 218 | 358 | 2.40e-12 | 66.6 |
| Msa0428070 | AT1G30330.2 | 30.323 | 155 | 79 | 3 | 7 | 146 | 218 | 358 | 2.40e-12 | 66.6 |
| Msa0428070 | AT5G37020.3 | 37.069 | 116 | 59 | 2 | 3 | 118 | 116 | 217 | 7.91e-12 | 65.1 |
| Msa0428070 | AT5G37020.2 | 37.069 | 116 | 59 | 2 | 3 | 118 | 211 | 312 | 7.92e-12 | 65.1 |
| Msa0428070 | AT5G37020.1 | 37.069 | 116 | 59 | 2 | 3 | 118 | 211 | 312 | 8.16e-12 | 65.1 |
| Msa0428070 | AT5G20730.2 | 32.075 | 159 | 78 | 4 | 3 | 146 | 212 | 355 | 3.61e-11 | 63.2 |
| Msa0428070 | AT5G20730.3 | 32.704 | 159 | 78 | 5 | 3 | 146 | 212 | 356 | 7.97e-11 | 62.0 |
| Msa0428070 | AT5G20730.1 | 32.704 | 159 | 78 | 5 | 3 | 146 | 212 | 356 | 8.06e-11 | 62.0 |
Find 52 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTTACTCTTGTGTTTA+TGG | 0.105939 | 3_2:-78843854 | Msa0428070:CDS |
| TTAACCTTTCTGCAGCGATA+TGG | 0.289310 | 3_2:-78845238 | Msa0428070:intron |
| ATTCTTACTCTTGTGTTTAT+GGG | 0.295461 | 3_2:-78843853 | Msa0428070:CDS |
| GTCCCAAGAACAAACTCTAT+TGG | 0.319310 | 3_2:+78845106 | None:intergenic |
| AACCCAATAGAGTTTGTTCT+TGG | 0.329589 | 3_2:-78845109 | Msa0428070:CDS |
| TCCCAAGAACAAACTCTATT+GGG | 0.339053 | 3_2:+78845107 | None:intergenic |
| AGAAATCACAATTGCTAGTT+GGG | 0.361412 | 3_2:-78845775 | Msa0428070:CDS |
| CTTCGACATCGAGTTCTAAA+AGG | 0.371968 | 3_2:-78845064 | Msa0428070:CDS |
| TCTAAAAGGCCGTTACAATC+TGG | 0.375045 | 3_2:-78845050 | Msa0428070:CDS |
| ACGTGGGACAAGCCAGGTTG+TGG | 0.388913 | 3_2:-78845138 | Msa0428070:CDS |
| AGCAGCAACAAGCGCATCAA+TGG | 0.405726 | 3_2:+78845688 | None:intergenic |
| AAATATTCCTTGGATACAAC+AGG | 0.411977 | 3_2:+78845647 | None:intergenic |
| ATAATAAATTAACCTTGGTT+AGG | 0.413125 | 3_2:+78845606 | None:intergenic |
| GCAGCAACAAGCGCATCAAT+GGG | 0.418539 | 3_2:+78845689 | None:intergenic |
| TAACCTTTCTGCAGCGATAT+GGG | 0.426316 | 3_2:-78845237 | Msa0428070:intron |
| AGAGCAAATTAAATATTCCT+TGG | 0.437132 | 3_2:+78845637 | None:intergenic |
| TTTGTCTCTCAATTGTCCAT+TGG | 0.440203 | 3_2:-78845462 | Msa0428070:CDS |
| CCGTTACAATCTGGATTGTC+TGG | 0.443879 | 3_2:-78845041 | Msa0428070:intron |
| CGTGGGACAAGCCAGGTTGT+GGG | 0.450757 | 3_2:-78845137 | Msa0428070:CDS |
| GTGTTTATGGGATGTCTCAC+GGG | 0.456735 | 3_2:-78843841 | Msa0428070:CDS |
| CACAATTGCTAGTTGGGGTC+AGG | 0.457568 | 3_2:-78845769 | Msa0428070:CDS |
| GAGAAATCACAATTGCTAGT+TGG | 0.465725 | 3_2:-78845776 | Msa0428070:CDS |
| TCTCAACTACACTACTATCT+TGG | 0.467867 | 3_2:+78844824 | None:intergenic |
| TGTGTTTATGGGATGTCTCA+CGG | 0.468124 | 3_2:-78843842 | Msa0428070:CDS |
| ACCCAATAGAGTTTGTTCTT+GGG | 0.481411 | 3_2:-78845108 | Msa0428070:CDS |
| AGATAGTAGTGTAGTTGAGA+TGG | 0.502287 | 3_2:-78844821 | Msa0428070:CDS |
| TAAGATGATGACTTCATCAA+TGG | 0.510939 | 3_2:+78843814 | None:intergenic |
| TCTGTTTCCTGTTGTATCCA+AGG | 0.517003 | 3_2:-78845654 | Msa0428070:CDS |
| AAATTAACCTTGGTTAGGCA+AGG | 0.536383 | 3_2:+78845611 | None:intergenic |
| AGTGTAGTTGAGATGGAAGG+TGG | 0.537688 | 3_2:-78844814 | Msa0428070:intron |
| AGTAGTGTAGTTGAGATGGA+AGG | 0.544496 | 3_2:-78844817 | Msa0428070:CDS |
| TTGATGATACCATTGAAGTC+GGG | 0.551346 | 3_2:-78843780 | Msa0428070:CDS |
| ATGAAGTCATCATCTTATGA+AGG | 0.553019 | 3_2:-78843808 | Msa0428070:CDS |
| CTCTAAGCCTTGCCTAACCA+AGG | 0.553634 | 3_2:-78845618 | Msa0428070:intron |
| ATGAAATGTCAATTGTTACA+AGG | 0.556474 | 3_2:-78845802 | Msa0428070:exon |
| TGGGACAAGCCAGGTTGTGG+GGG | 0.556761 | 3_2:-78845135 | Msa0428070:CDS |
| AAGTGTACGTGGGACAAGCC+AGG | 0.556937 | 3_2:-78845144 | Msa0428070:CDS |
| GCATTGTTGTATGTTGAAAG+TGG | 0.558663 | 3_2:+78845489 | None:intergenic |
| TTAGCAGAAAGGACTGATGA+TGG | 0.562029 | 3_2:+78845719 | None:intergenic |
| ATTGATGATACCATTGAAGT+CGG | 0.565691 | 3_2:-78843781 | Msa0428070:CDS |
| TGGGCATATTATTAGCAGAA+AGG | 0.573682 | 3_2:+78845708 | None:intergenic |
| CAAAAGCATTTGATACGCGC+TGG | 0.577963 | 3_2:-78845413 | Msa0428070:intron |
| GGAATGCATCCCGACTTCAA+TGG | 0.601024 | 3_2:+78843771 | None:intergenic |
| GTGGGACAAGCCAGGTTGTG+GGG | 0.605722 | 3_2:-78845136 | Msa0428070:CDS |
| TGAAATGTCAATTGTTACAA+GGG | 0.606701 | 3_2:-78845801 | Msa0428070:exon |
| CATATCATATCTCAATCCAA+TGG | 0.607038 | 3_2:+78845446 | None:intergenic |
| GGGACAAGCCAGGTTGTGGG+GGG | 0.611452 | 3_2:-78845134 | Msa0428070:CDS |
| GAAATCACAATTGCTAGTTG+GGG | 0.640389 | 3_2:-78845774 | Msa0428070:CDS |
| ACATCGAGGTTAAGTGTACG+TGG | 0.649453 | 3_2:-78845155 | Msa0428070:CDS |
| CCAGACAATCCAGATTGTAA+CGG | 0.653501 | 3_2:+78845041 | None:intergenic |
| ACTCGATGTCGAAGACCGAG+AGG | 0.696816 | 3_2:+78845073 | None:intergenic |
| CATCGAGGTTAAGTGTACGT+GGG | 0.728547 | 3_2:-78845154 | Msa0428070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATAGATATATAATATA+CGG | - | chr3_2:78844225-78844244 | Msa0428070:intron | 10.0% |
| !!! | TTTTTTTTCTTCTTATATAA+AGG | - | chr3_2:78845597-78845616 | Msa0428070:intron | 10.0% |
| !! | TTACATAGATATATAATATA+CGG | - | chr3_2:78844225-78844244 | Msa0428070:intron | 10.0% |
| !!! | TTTTTTTTCTTCTTATATAA+AGG | - | chr3_2:78845597-78845616 | Msa0428070:intron | 10.0% |
| !! | TTGTTATAATAAATTAACCT+TGG | + | chr3_2:78843956-78843975 | None:intergenic | 15.0% |
| !!! | TTATAACAAATACAAACTTT+TGG | - | chr3_2:78843967-78843986 | Msa0428070:intron | 15.0% |
| !!! | ATATTTTCTTTACTTTCTTA+AGG | - | chr3_2:78844537-78844556 | Msa0428070:intron | 15.0% |
| !!! | CAATATTATTTTGTAACAAT+TGG | + | chr3_2:78844936-78844955 | None:intergenic | 15.0% |
| !! | TTGTTATAATAAATTAACCT+TGG | + | chr3_2:78843956-78843975 | None:intergenic | 15.0% |
| !!! | TTATAACAAATACAAACTTT+TGG | - | chr3_2:78843967-78843986 | Msa0428070:intron | 15.0% |
| !!! | ATATTTTCTTTACTTTCTTA+AGG | - | chr3_2:78844537-78844556 | Msa0428070:intron | 15.0% |
| !!! | CAATATTATTTTGTAACAAT+TGG | + | chr3_2:78844936-78844955 | None:intergenic | 15.0% |
| !! | ATAATAAATTAACCTTGGTT+AGG | + | chr3_2:78843951-78843970 | None:intergenic | 20.0% |
| !! | ATTGAATTGTAATACAAAAG+AGG | + | chr3_2:78845343-78845362 | None:intergenic | 20.0% |
| !!! | TTTTCTAATATTTAGTATCG+AGG | - | chr3_2:78845508-78845527 | Msa0428070:CDS | 20.0% |
| !! | TCTTATATAAAGGTAATGTA+AGG | - | chr3_2:78845607-78845626 | Msa0428070:intron | 20.0% |
| !! | TTCAATTGATCAATTGATAA+TGG | - | chr3_2:78845646-78845665 | Msa0428070:CDS | 20.0% |
| !! | ATAATAAATTAACCTTGGTT+AGG | + | chr3_2:78843951-78843970 | None:intergenic | 20.0% |
| !! | ATTGAATTGTAATACAAAAG+AGG | + | chr3_2:78845343-78845362 | None:intergenic | 20.0% |
| !!! | TTTTCTAATATTTAGTATCG+AGG | - | chr3_2:78845508-78845527 | Msa0428070:CDS | 20.0% |
| !! | TCTTATATAAAGGTAATGTA+AGG | - | chr3_2:78845607-78845626 | Msa0428070:intron | 20.0% |
| !! | TTCAATTGATCAATTGATAA+TGG | - | chr3_2:78845646-78845665 | Msa0428070:CDS | 20.0% |
| ! | ATGAAATGTCAATTGTTACA+AGG | - | chr3_2:78843752-78843771 | Msa0428070:CDS | 25.0% |
| ! | TGAAATGTCAATTGTTACAA+GGG | - | chr3_2:78843753-78843772 | Msa0428070:CDS | 25.0% |
| ! | AGAGCAAATTAAATATTCCT+TGG | + | chr3_2:78843920-78843939 | None:intergenic | 25.0% |
| !! | CAAATACAAACTTTTGGATT+AGG | - | chr3_2:78843973-78843992 | Msa0428070:intron | 25.0% |
| ! | ATTTCTGAACTATTGAACTT+TGG | - | chr3_2:78844172-78844191 | Msa0428070:intron | 25.0% |
| ! | GTTATATTTAAACTGAGAAC+TGG | - | chr3_2:78844634-78844653 | Msa0428070:intron | 25.0% |
| !!! | AAGTCATATTTTGAGTTAGA+TGG | + | chr3_2:78845471-78845490 | None:intergenic | 25.0% |
| !! | AGCATTTTATTCAAATGTTC+AGG | - | chr3_2:78845671-78845690 | Msa0428070:CDS | 25.0% |
| ! | ATTCTTACTCTTGTGTTTAT+GGG | - | chr3_2:78845701-78845720 | Msa0428070:CDS | 25.0% |
| ! | GTAACAATTGACATTTCATA+TGG | + | chr3_2:78843751-78843770 | None:intergenic | 25.0% |
| ! | ATGAAATGTCAATTGTTACA+AGG | - | chr3_2:78843752-78843771 | Msa0428070:CDS | 25.0% |
| ! | TGAAATGTCAATTGTTACAA+GGG | - | chr3_2:78843753-78843772 | Msa0428070:CDS | 25.0% |
| ! | AGAGCAAATTAAATATTCCT+TGG | + | chr3_2:78843920-78843939 | None:intergenic | 25.0% |
| !! | CAAATACAAACTTTTGGATT+AGG | - | chr3_2:78843973-78843992 | Msa0428070:intron | 25.0% |
| ! | ATTTCTGAACTATTGAACTT+TGG | - | chr3_2:78844172-78844191 | Msa0428070:intron | 25.0% |
| ! | GTTATATTTAAACTGAGAAC+TGG | - | chr3_2:78844634-78844653 | Msa0428070:intron | 25.0% |
| !!! | AAGTCATATTTTGAGTTAGA+TGG | + | chr3_2:78845471-78845490 | None:intergenic | 25.0% |
| !! | AGCATTTTATTCAAATGTTC+AGG | - | chr3_2:78845671-78845690 | Msa0428070:CDS | 25.0% |
| ! | ATTCTTACTCTTGTGTTTAT+GGG | - | chr3_2:78845701-78845720 | Msa0428070:CDS | 25.0% |
| AGAAATCACAATTGCTAGTT+GGG | - | chr3_2:78843779-78843798 | Msa0428070:CDS | 30.0% | |
| AAATATTCCTTGGATACAAC+AGG | + | chr3_2:78843910-78843929 | None:intergenic | 30.0% | |
| CATATCATATCTCAATCCAA+TGG | + | chr3_2:78844111-78844130 | None:intergenic | 30.0% | |
| !!! | TGTAGCATCTTTTTTTGCTA+AGG | - | chr3_2:78844202-78844221 | Msa0428070:intron | 30.0% |
| ! | ATGTTTTTCCATCTTGAATC+TGG | + | chr3_2:78844383-78844402 | None:intergenic | 30.0% |
| ! | AGAGTTGATTATAGTGAAAG+AGG | + | chr3_2:78844816-78844835 | None:intergenic | 30.0% |
| ACTATAATCAACTCTGTTAG+TGG | - | chr3_2:78844821-78844840 | Msa0428070:CDS | 30.0% | |
| CTATAATCAACTCTGTTAGT+GGG | - | chr3_2:78844822-78844841 | Msa0428070:CDS | 30.0% | |
| CTATCAATCGAATTTGATGT+CGG | + | chr3_2:78845038-78845057 | None:intergenic | 30.0% | |
| ATGTTCATTCGAATTTCAAC+TGG | + | chr3_2:78845160-78845179 | None:intergenic | 30.0% | |
| !!! | TGAGAGATATGTTTTTTGTG+AGG | - | chr3_2:78845278-78845297 | Msa0428070:intron | 30.0% |
| ! | AACCAGATTTGAGTTTACTT+TGG | - | chr3_2:78845389-78845408 | Msa0428070:intron | 30.0% |
| CATTCTTACTCTTGTGTTTA+TGG | - | chr3_2:78845700-78845719 | Msa0428070:CDS | 30.0% | |
| TAAGATGATGACTTCATCAA+TGG | + | chr3_2:78845743-78845762 | None:intergenic | 30.0% | |
| ATGAAGTCATCATCTTATGA+AGG | - | chr3_2:78845746-78845765 | Msa0428070:CDS | 30.0% | |
| ! | ATTGATGATACCATTGAAGT+CGG | - | chr3_2:78845773-78845792 | Msa0428070:CDS | 30.0% |
| AGAAATCACAATTGCTAGTT+GGG | - | chr3_2:78843779-78843798 | Msa0428070:CDS | 30.0% | |
| AAATATTCCTTGGATACAAC+AGG | + | chr3_2:78843910-78843929 | None:intergenic | 30.0% | |
| CATATCATATCTCAATCCAA+TGG | + | chr3_2:78844111-78844130 | None:intergenic | 30.0% | |
| !!! | TGTAGCATCTTTTTTTGCTA+AGG | - | chr3_2:78844202-78844221 | Msa0428070:intron | 30.0% |
| ! | ATGTTTTTCCATCTTGAATC+TGG | + | chr3_2:78844383-78844402 | None:intergenic | 30.0% |
| ! | AGAGTTGATTATAGTGAAAG+AGG | + | chr3_2:78844816-78844835 | None:intergenic | 30.0% |
| ACTATAATCAACTCTGTTAG+TGG | - | chr3_2:78844821-78844840 | Msa0428070:CDS | 30.0% | |
| CTATAATCAACTCTGTTAGT+GGG | - | chr3_2:78844822-78844841 | Msa0428070:CDS | 30.0% | |
| CTATCAATCGAATTTGATGT+CGG | + | chr3_2:78845038-78845057 | None:intergenic | 30.0% | |
| ATGTTCATTCGAATTTCAAC+TGG | + | chr3_2:78845160-78845179 | None:intergenic | 30.0% | |
| !!! | TGAGAGATATGTTTTTTGTG+AGG | - | chr3_2:78845278-78845297 | Msa0428070:intron | 30.0% |
| ! | AACCAGATTTGAGTTTACTT+TGG | - | chr3_2:78845389-78845408 | Msa0428070:intron | 30.0% |
| CATTCTTACTCTTGTGTTTA+TGG | - | chr3_2:78845700-78845719 | Msa0428070:CDS | 30.0% | |
| TAAGATGATGACTTCATCAA+TGG | + | chr3_2:78845743-78845762 | None:intergenic | 30.0% | |
| ATGAAGTCATCATCTTATGA+AGG | - | chr3_2:78845746-78845765 | Msa0428070:CDS | 30.0% | |
| ! | ATTGATGATACCATTGAAGT+CGG | - | chr3_2:78845773-78845792 | Msa0428070:CDS | 30.0% |
| GAGAAATCACAATTGCTAGT+TGG | - | chr3_2:78843778-78843797 | Msa0428070:CDS | 35.0% | |
| GAAATCACAATTGCTAGTTG+GGG | - | chr3_2:78843780-78843799 | Msa0428070:CDS | 35.0% | |
| TGGGCATATTATTAGCAGAA+AGG | + | chr3_2:78843849-78843868 | None:intergenic | 35.0% | |
| AAATTAACCTTGGTTAGGCA+AGG | + | chr3_2:78843946-78843965 | None:intergenic | 35.0% | |
| GCATTGTTGTATGTTGAAAG+TGG | + | chr3_2:78844068-78844087 | None:intergenic | 35.0% | |
| TTTGTCTCTCAATTGTCCAT+TGG | - | chr3_2:78844092-78844111 | Msa0428070:intron | 35.0% | |
| TTCAAGATGGAAAAACATCG+AGG | - | chr3_2:78844385-78844404 | Msa0428070:intron | 35.0% | |
| ! | AACCCAATAGAGTTTGTTCT+TGG | - | chr3_2:78844445-78844464 | Msa0428070:intron | 35.0% |
| ! | ACCCAATAGAGTTTGTTCTT+GGG | - | chr3_2:78844446-78844465 | Msa0428070:intron | 35.0% |
| TCCCAAGAACAAACTCTATT+GGG | + | chr3_2:78844450-78844469 | None:intergenic | 35.0% | |
| TCTCAACTACACTACTATCT+TGG | + | chr3_2:78844733-78844752 | None:intergenic | 35.0% | |
| AGATAGTAGTGTAGTTGAGA+TGG | - | chr3_2:78844733-78844752 | Msa0428070:intron | 35.0% | |
| CGACATCAAATTCGATTGAT+AGG | - | chr3_2:78845036-78845055 | Msa0428070:intron | 35.0% | |
| TTCGATTGATAGGAATCTGA+AGG | - | chr3_2:78845046-78845065 | Msa0428070:CDS | 35.0% | |
| CTGAAGGCAATAACAACTTA+AGG | - | chr3_2:78845062-78845081 | Msa0428070:CDS | 35.0% | |
| GACCAAAGTAAACTCAAATC+TGG | + | chr3_2:78845394-78845413 | None:intergenic | 35.0% | |
| ! | ATGGTTACTTGATAGTCTAC+GGG | + | chr3_2:78845452-78845471 | None:intergenic | 35.0% |
| ! | GATGGTTACTTGATAGTCTA+CGG | + | chr3_2:78845453-78845472 | None:intergenic | 35.0% |
| TCAATTGAATGTGTGATCAG+TGG | + | chr3_2:78845635-78845654 | None:intergenic | 35.0% | |
| ! | TTGATGATACCATTGAAGTC+GGG | - | chr3_2:78845774-78845793 | Msa0428070:CDS | 35.0% |
| GAGAAATCACAATTGCTAGT+TGG | - | chr3_2:78843778-78843797 | Msa0428070:CDS | 35.0% | |
| GAAATCACAATTGCTAGTTG+GGG | - | chr3_2:78843780-78843799 | Msa0428070:CDS | 35.0% | |
| TGGGCATATTATTAGCAGAA+AGG | + | chr3_2:78843849-78843868 | None:intergenic | 35.0% | |
| AAATTAACCTTGGTTAGGCA+AGG | + | chr3_2:78843946-78843965 | None:intergenic | 35.0% | |
| GCATTGTTGTATGTTGAAAG+TGG | + | chr3_2:78844068-78844087 | None:intergenic | 35.0% | |
| TTTGTCTCTCAATTGTCCAT+TGG | - | chr3_2:78844092-78844111 | Msa0428070:intron | 35.0% | |
| TTCAAGATGGAAAAACATCG+AGG | - | chr3_2:78844385-78844404 | Msa0428070:intron | 35.0% | |
| ! | AACCCAATAGAGTTTGTTCT+TGG | - | chr3_2:78844445-78844464 | Msa0428070:intron | 35.0% |
| ! | ACCCAATAGAGTTTGTTCTT+GGG | - | chr3_2:78844446-78844465 | Msa0428070:intron | 35.0% |
| TCCCAAGAACAAACTCTATT+GGG | + | chr3_2:78844450-78844469 | None:intergenic | 35.0% | |
| TCTCAACTACACTACTATCT+TGG | + | chr3_2:78844733-78844752 | None:intergenic | 35.0% | |
| AGATAGTAGTGTAGTTGAGA+TGG | - | chr3_2:78844733-78844752 | Msa0428070:intron | 35.0% | |
| CGACATCAAATTCGATTGAT+AGG | - | chr3_2:78845036-78845055 | Msa0428070:intron | 35.0% | |
| TTCGATTGATAGGAATCTGA+AGG | - | chr3_2:78845046-78845065 | Msa0428070:CDS | 35.0% | |
| CTGAAGGCAATAACAACTTA+AGG | - | chr3_2:78845062-78845081 | Msa0428070:CDS | 35.0% | |
| GACCAAAGTAAACTCAAATC+TGG | + | chr3_2:78845394-78845413 | None:intergenic | 35.0% | |
| ! | ATGGTTACTTGATAGTCTAC+GGG | + | chr3_2:78845452-78845471 | None:intergenic | 35.0% |
| ! | GATGGTTACTTGATAGTCTA+CGG | + | chr3_2:78845453-78845472 | None:intergenic | 35.0% |
| TCAATTGAATGTGTGATCAG+TGG | + | chr3_2:78845635-78845654 | None:intergenic | 35.0% | |
| ! | TTGATGATACCATTGAAGTC+GGG | - | chr3_2:78845774-78845793 | Msa0428070:CDS | 35.0% |
| TTAGCAGAAAGGACTGATGA+TGG | + | chr3_2:78843838-78843857 | None:intergenic | 40.0% | |
| TCTGTTTCCTGTTGTATCCA+AGG | - | chr3_2:78843900-78843919 | Msa0428070:intron | 40.0% | |
| TTAACCTTTCTGCAGCGATA+TGG | - | chr3_2:78844316-78844335 | Msa0428070:intron | 40.0% | |
| TAACCTTTCTGCAGCGATAT+GGG | - | chr3_2:78844317-78844336 | Msa0428070:intron | 40.0% | |
| AGCGATATGGGTACTATTGT+GGG | - | chr3_2:78844329-78844348 | Msa0428070:intron | 40.0% | |
| TATTGTGGGCATCAGTGATT+TGG | - | chr3_2:78844343-78844362 | Msa0428070:intron | 40.0% | |
| ! | GTGATTTGGATCCCTTAATG+TGG | - | chr3_2:78844357-78844376 | Msa0428070:intron | 40.0% |
| CTTGAATCTGGCCACATTAA+GGG | + | chr3_2:78844371-78844390 | None:intergenic | 40.0% | |
| TCTTGAATCTGGCCACATTA+AGG | + | chr3_2:78844372-78844391 | None:intergenic | 40.0% | |
| TAATGTGGCCAGATTCAAGA+TGG | - | chr3_2:78844372-78844391 | Msa0428070:intron | 40.0% | |
| GTCCCAAGAACAAACTCTAT+TGG | + | chr3_2:78844451-78844470 | None:intergenic | 40.0% | |
| ! | GGGACATTCTTTTATCCTCT+CGG | - | chr3_2:78844466-78844485 | Msa0428070:intron | 40.0% |
| !! | CTTCGACATCGAGTTCTAAA+AGG | - | chr3_2:78844490-78844509 | Msa0428070:intron | 40.0% |
| TCTAAAAGGCCGTTACAATC+TGG | - | chr3_2:78844504-78844523 | Msa0428070:intron | 40.0% | |
| CCAGACAATCCAGATTGTAA+CGG | + | chr3_2:78844516-78844535 | None:intergenic | 40.0% | |
| AGTAGTGTAGTTGAGATGGA+AGG | - | chr3_2:78844737-78844756 | Msa0428070:intron | 40.0% | |
| AGGTGGTAGTACTCTCAAAA+TGG | - | chr3_2:78844757-78844776 | Msa0428070:intron | 40.0% | |
| TGTGTTTATGGGATGTCTCA+CGG | - | chr3_2:78845712-78845731 | Msa0428070:CDS | 40.0% | |
| ! | GGATGGTAGTTTTCTTTGGA+TGG | + | chr3_2:78845807-78845826 | None:intergenic | 40.0% |
| TTAGCAGAAAGGACTGATGA+TGG | + | chr3_2:78843838-78843857 | None:intergenic | 40.0% | |
| TCTGTTTCCTGTTGTATCCA+AGG | - | chr3_2:78843900-78843919 | Msa0428070:intron | 40.0% | |
| TTAACCTTTCTGCAGCGATA+TGG | - | chr3_2:78844316-78844335 | Msa0428070:intron | 40.0% | |
| TAACCTTTCTGCAGCGATAT+GGG | - | chr3_2:78844317-78844336 | Msa0428070:intron | 40.0% | |
| AGCGATATGGGTACTATTGT+GGG | - | chr3_2:78844329-78844348 | Msa0428070:intron | 40.0% | |
| TATTGTGGGCATCAGTGATT+TGG | - | chr3_2:78844343-78844362 | Msa0428070:intron | 40.0% | |
| ! | GTGATTTGGATCCCTTAATG+TGG | - | chr3_2:78844357-78844376 | Msa0428070:intron | 40.0% |
| CTTGAATCTGGCCACATTAA+GGG | + | chr3_2:78844371-78844390 | None:intergenic | 40.0% | |
| TCTTGAATCTGGCCACATTA+AGG | + | chr3_2:78844372-78844391 | None:intergenic | 40.0% | |
| TAATGTGGCCAGATTCAAGA+TGG | - | chr3_2:78844372-78844391 | Msa0428070:intron | 40.0% | |
| GTCCCAAGAACAAACTCTAT+TGG | + | chr3_2:78844451-78844470 | None:intergenic | 40.0% | |
| ! | GGGACATTCTTTTATCCTCT+CGG | - | chr3_2:78844466-78844485 | Msa0428070:intron | 40.0% |
| !! | CTTCGACATCGAGTTCTAAA+AGG | - | chr3_2:78844490-78844509 | Msa0428070:intron | 40.0% |
| TCTAAAAGGCCGTTACAATC+TGG | - | chr3_2:78844504-78844523 | Msa0428070:intron | 40.0% | |
| CCAGACAATCCAGATTGTAA+CGG | + | chr3_2:78844516-78844535 | None:intergenic | 40.0% | |
| AGTAGTGTAGTTGAGATGGA+AGG | - | chr3_2:78844737-78844756 | Msa0428070:intron | 40.0% | |
| AGGTGGTAGTACTCTCAAAA+TGG | - | chr3_2:78844757-78844776 | Msa0428070:intron | 40.0% | |
| TGTGTTTATGGGATGTCTCA+CGG | - | chr3_2:78845712-78845731 | Msa0428070:CDS | 40.0% | |
| ! | GGATGGTAGTTTTCTTTGGA+TGG | + | chr3_2:78845807-78845826 | None:intergenic | 40.0% |
| !! | CAAAAGCATTTGATACGCGC+TGG | - | chr3_2:78844141-78844160 | Msa0428070:intron | 45.0% |
| CAGCGATATGGGTACTATTG+TGG | - | chr3_2:78844328-78844347 | Msa0428070:intron | 45.0% | |
| ACATCGAGGTTAAGTGTACG+TGG | - | chr3_2:78844399-78844418 | Msa0428070:intron | 45.0% | |
| CATCGAGGTTAAGTGTACGT+GGG | - | chr3_2:78844400-78844419 | Msa0428070:intron | 45.0% | |
| CCGTTACAATCTGGATTGTC+TGG | - | chr3_2:78844513-78844532 | Msa0428070:intron | 45.0% | |
| AGTGTAGTTGAGATGGAAGG+TGG | - | chr3_2:78844740-78844759 | Msa0428070:intron | 45.0% | |
| GTGTTTATGGGATGTCTCAC+GGG | - | chr3_2:78845713-78845732 | Msa0428070:CDS | 45.0% | |
| !! | CAAAAGCATTTGATACGCGC+TGG | - | chr3_2:78844141-78844160 | Msa0428070:intron | 45.0% |
| CAGCGATATGGGTACTATTG+TGG | - | chr3_2:78844328-78844347 | Msa0428070:intron | 45.0% | |
| ACATCGAGGTTAAGTGTACG+TGG | - | chr3_2:78844399-78844418 | Msa0428070:intron | 45.0% | |
| CATCGAGGTTAAGTGTACGT+GGG | - | chr3_2:78844400-78844419 | Msa0428070:intron | 45.0% | |
| CCGTTACAATCTGGATTGTC+TGG | - | chr3_2:78844513-78844532 | Msa0428070:intron | 45.0% | |
| AGTGTAGTTGAGATGGAAGG+TGG | - | chr3_2:78844740-78844759 | Msa0428070:intron | 45.0% | |
| GTGTTTATGGGATGTCTCAC+GGG | - | chr3_2:78845713-78845732 | Msa0428070:CDS | 45.0% | |
| !! | CATATTTATATATATTAAAA+AGG | + | chr3_2:78844851-78844870 | None:intergenic | 5.0% |
| !! | CATATTTATATATATTAAAA+AGG | + | chr3_2:78844851-78844870 | None:intergenic | 5.0% |
| CACAATTGCTAGTTGGGGTC+AGG | - | chr3_2:78843785-78843804 | Msa0428070:CDS | 50.0% | |
| GCAGCAACAAGCGCATCAAT+GGG | + | chr3_2:78843868-78843887 | None:intergenic | 50.0% | |
| AGCAGCAACAAGCGCATCAA+TGG | + | chr3_2:78843869-78843888 | None:intergenic | 50.0% | |
| CTCTAAGCCTTGCCTAACCA+AGG | - | chr3_2:78843936-78843955 | Msa0428070:intron | 50.0% | |
| GTACCCATATCGCTGCAGAA+AGG | + | chr3_2:78844323-78844342 | None:intergenic | 50.0% | |
| GGAATGCATCCCGACTTCAA+TGG | + | chr3_2:78845786-78845805 | None:intergenic | 50.0% | |
| CACAATTGCTAGTTGGGGTC+AGG | - | chr3_2:78843785-78843804 | Msa0428070:CDS | 50.0% | |
| GCAGCAACAAGCGCATCAAT+GGG | + | chr3_2:78843868-78843887 | None:intergenic | 50.0% | |
| AGCAGCAACAAGCGCATCAA+TGG | + | chr3_2:78843869-78843888 | None:intergenic | 50.0% | |
| CTCTAAGCCTTGCCTAACCA+AGG | - | chr3_2:78843936-78843955 | Msa0428070:intron | 50.0% | |
| GTACCCATATCGCTGCAGAA+AGG | + | chr3_2:78844323-78844342 | None:intergenic | 50.0% | |
| GGAATGCATCCCGACTTCAA+TGG | + | chr3_2:78845786-78845805 | None:intergenic | 50.0% | |
| AAGTGTACGTGGGACAAGCC+AGG | - | chr3_2:78844410-78844429 | Msa0428070:intron | 55.0% | |
| ACTCGATGTCGAAGACCGAG+AGG | + | chr3_2:78844484-78844503 | None:intergenic | 55.0% | |
| AAGTGTACGTGGGACAAGCC+AGG | - | chr3_2:78844410-78844429 | Msa0428070:intron | 55.0% | |
| ACTCGATGTCGAAGACCGAG+AGG | + | chr3_2:78844484-78844503 | None:intergenic | 55.0% | |
| ACGTGGGACAAGCCAGGTTG+TGG | - | chr3_2:78844416-78844435 | Msa0428070:intron | 60.0% | |
| CGTGGGACAAGCCAGGTTGT+GGG | - | chr3_2:78844417-78844436 | Msa0428070:intron | 60.0% | |
| GTGGGACAAGCCAGGTTGTG+GGG | - | chr3_2:78844418-78844437 | Msa0428070:intron | 60.0% | |
| TGGGACAAGCCAGGTTGTGG+GGG | - | chr3_2:78844419-78844438 | Msa0428070:intron | 60.0% | |
| ! | TGGGTTTTCCCCCCACAACC+TGG | + | chr3_2:78844431-78844450 | None:intergenic | 60.0% |
| ACGTGGGACAAGCCAGGTTG+TGG | - | chr3_2:78844416-78844435 | Msa0428070:intron | 60.0% | |
| CGTGGGACAAGCCAGGTTGT+GGG | - | chr3_2:78844417-78844436 | Msa0428070:intron | 60.0% | |
| GTGGGACAAGCCAGGTTGTG+GGG | - | chr3_2:78844418-78844437 | Msa0428070:intron | 60.0% | |
| TGGGACAAGCCAGGTTGTGG+GGG | - | chr3_2:78844419-78844438 | Msa0428070:intron | 60.0% | |
| ! | TGGGTTTTCCCCCCACAACC+TGG | + | chr3_2:78844431-78844450 | None:intergenic | 60.0% |
| GGGACAAGCCAGGTTGTGGG+GGG | - | chr3_2:78844420-78844439 | Msa0428070:intron | 65.0% | |
| GGGACAAGCCAGGTTGTGGG+GGG | - | chr3_2:78844420-78844439 | Msa0428070:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 78843750 | 78845826 | 78843750 | ID=Msa0428070;Name=Msa0428070 |
| chr3_2 | mRNA | 78843750 | 78845826 | 78843750 | ID=Msa0428070-mRNA-1;Parent=Msa0428070;Name=Msa0428070-mRNA-1;_AED=0.21;_eAED=0.37;_QI=7|0|0|0.85|0.16|0.28|7|0|238 |
| chr3_2 | exon | 78845619 | 78845826 | 78845619 | ID=Msa0428070-mRNA-1:exon:21087;Parent=Msa0428070-mRNA-1 |
| chr3_2 | exon | 78845559 | 78845581 | 78845559 | ID=Msa0428070-mRNA-1:exon:21086;Parent=Msa0428070-mRNA-1 |
| chr3_2 | exon | 78845414 | 78845536 | 78845414 | ID=Msa0428070-mRNA-1:exon:21085;Parent=Msa0428070-mRNA-1 |
| chr3_2 | exon | 78845238 | 78845245 | 78845238 | ID=Msa0428070-mRNA-1:exon:21084;Parent=Msa0428070-mRNA-1 |
| chr3_2 | exon | 78845042 | 78845185 | 78845042 | ID=Msa0428070-mRNA-1:exon:21083;Parent=Msa0428070-mRNA-1 |
| chr3_2 | exon | 78844815 | 78844895 | 78844815 | ID=Msa0428070-mRNA-1:exon:21082;Parent=Msa0428070-mRNA-1 |
| chr3_2 | exon | 78843750 | 78843883 | 78843750 | ID=Msa0428070-mRNA-1:exon:21081;Parent=Msa0428070-mRNA-1 |
| chr3_2 | five_prime_UTR | 78845820 | 78845826 | 78845820 | ID=Msa0428070-mRNA-1:five_prime_utr;Parent=Msa0428070-mRNA-1 |
| chr3_2 | CDS | 78845619 | 78845819 | 78845619 | ID=Msa0428070-mRNA-1:cds;Parent=Msa0428070-mRNA-1 |
| chr3_2 | CDS | 78845559 | 78845581 | 78845559 | ID=Msa0428070-mRNA-1:cds;Parent=Msa0428070-mRNA-1 |
| chr3_2 | CDS | 78845414 | 78845536 | 78845414 | ID=Msa0428070-mRNA-1:cds;Parent=Msa0428070-mRNA-1 |
| chr3_2 | CDS | 78845238 | 78845245 | 78845238 | ID=Msa0428070-mRNA-1:cds;Parent=Msa0428070-mRNA-1 |
| chr3_2 | CDS | 78845042 | 78845185 | 78845042 | ID=Msa0428070-mRNA-1:cds;Parent=Msa0428070-mRNA-1 |
| chr3_2 | CDS | 78844815 | 78844895 | 78844815 | ID=Msa0428070-mRNA-1:cds;Parent=Msa0428070-mRNA-1 |
| chr3_2 | CDS | 78843750 | 78843883 | 78843750 | ID=Msa0428070-mRNA-1:cds;Parent=Msa0428070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
