Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424760 | sp|P93024|ARFE_ARATH | 39.877 | 163 | 61 | 4 | 3 | 146 | 243 | 387 | 7.06e-22 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424760 | G7JXN7 | 67.662 | 201 | 32 | 2 | 19 | 204 | 30 | 212 | 1.35e-70 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0428030 | Msa1424760 | 0.896024 | 5.482355e-76 | -8.615850e-47 |
| Msa0428070 | Msa1424760 | 0.891488 | 3.796323e-74 | -8.615850e-47 |
| Msa0474420 | Msa1424760 | 0.801156 | 1.028255e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424760 | MtrunA17_Chr1g0156321 | 39.153 | 189 | 73 | 5 | 3 | 167 | 231 | 401 | 2.32e-23 | 99.4 |
| Msa1424760 | MtrunA17_Chr3g0109391 | 39.450 | 109 | 52 | 2 | 7 | 115 | 219 | 313 | 2.38e-13 | 70.1 |
| Msa1424760 | MtrunA17_Chr2g0285461 | 30.968 | 155 | 78 | 3 | 7 | 146 | 216 | 356 | 3.54e-13 | 69.3 |
| Msa1424760 | MtrunA17_Chr4g0070181 | 34.969 | 163 | 68 | 5 | 3 | 146 | 211 | 354 | 5.95e-13 | 68.9 |
| Msa1424760 | MtrunA17_Chr5g0433301 | 32.903 | 155 | 75 | 4 | 7 | 146 | 217 | 357 | 6.88e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424760 | AT1G19850.2 | 39.877 | 163 | 61 | 4 | 3 | 146 | 232 | 376 | 6.82e-23 | 98.6 |
| Msa1424760 | AT1G19850.1 | 39.877 | 163 | 61 | 4 | 3 | 146 | 243 | 387 | 7.18e-23 | 98.6 |
| Msa1424760 | AT1G19220.1 | 37.736 | 159 | 69 | 6 | 3 | 146 | 211 | 354 | 2.84e-13 | 70.1 |
| Msa1424760 | AT1G30330.3 | 30.323 | 155 | 79 | 3 | 7 | 146 | 218 | 358 | 5.10e-12 | 66.2 |
| Msa1424760 | AT1G30330.2 | 30.323 | 155 | 79 | 3 | 7 | 146 | 218 | 358 | 5.10e-12 | 66.2 |
| Msa1424760 | AT1G30330.1 | 30.323 | 155 | 79 | 3 | 7 | 146 | 216 | 356 | 5.75e-12 | 66.2 |
| Msa1424760 | AT5G37020.3 | 37.069 | 116 | 59 | 2 | 3 | 118 | 116 | 217 | 2.23e-11 | 64.3 |
| Msa1424760 | AT5G37020.2 | 37.069 | 116 | 59 | 2 | 3 | 118 | 211 | 312 | 2.74e-11 | 64.3 |
| Msa1424760 | AT5G37020.1 | 37.069 | 116 | 59 | 2 | 3 | 118 | 211 | 312 | 2.81e-11 | 64.3 |
| Msa1424760 | AT5G20730.2 | 32.075 | 159 | 78 | 4 | 3 | 146 | 212 | 355 | 8.35e-11 | 62.8 |
Find 55 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTTACTCTTGTGTTTA+TGG | 0.105939 | tig0025789:+23789 | Msa1424760:CDS |
| TTAACCTTTCTGCAGCGATA+TGG | 0.289310 | tig0025789:+22406 | Msa1424760:intron |
| ATTCTTACTCTTGTGTTTAT+GGG | 0.295461 | tig0025789:+23790 | Msa1424760:CDS |
| GTCCCAAGAACAAACTCTAT+TGG | 0.319310 | tig0025789:-22538 | None:intergenic |
| AACCCAATAGAGTTTGTTCT+TGG | 0.329589 | tig0025789:+22535 | Msa1424760:CDS |
| TCCCAAGAACAAACTCTATT+GGG | 0.339053 | tig0025789:-22537 | None:intergenic |
| AGAAATCACAATTGCTAGTT+GGG | 0.361412 | tig0025789:+21869 | Msa1424760:CDS |
| CTTCGACATCGAGTTCTAAA+AGG | 0.371968 | tig0025789:+22580 | Msa1424760:CDS |
| TCTAAAAGGCCGTTACAATC+TGG | 0.375045 | tig0025789:+22594 | Msa1424760:CDS |
| ACGTGGGACAAGCCAGGTTG+TGG | 0.388913 | tig0025789:+22506 | Msa1424760:CDS |
| AGCAGCAACAAGCGCATCAA+TGG | 0.405726 | tig0025789:-21956 | None:intergenic |
| AAATATTCCTTGGATACAAC+AGG | 0.411977 | tig0025789:-21997 | None:intergenic |
| ATAATAAATTAACCTTGGTT+AGG | 0.413125 | tig0025789:-22038 | None:intergenic |
| GCAGCAACAAGCGCATCAAT+GGG | 0.418539 | tig0025789:-21955 | None:intergenic |
| AGGTGGTAGTACTCTCAAAA+TGG | 0.420695 | tig0025789:+22847 | Msa1424760:CDS |
| TAACCTTTCTGCAGCGATAT+GGG | 0.426316 | tig0025789:+22407 | Msa1424760:intron |
| AGAGCAAATTAAATATTCCT+TGG | 0.437132 | tig0025789:-22007 | None:intergenic |
| TTTGTCTCTCAATTGTCCAT+TGG | 0.440203 | tig0025789:+22182 | Msa1424760:CDS |
| CCGTTACAATCTGGATTGTC+TGG | 0.443879 | tig0025789:+22603 | Msa1424760:CDS |
| CGTGGGACAAGCCAGGTTGT+GGG | 0.450757 | tig0025789:+22507 | Msa1424760:CDS |
| GTGTTTATGGGATGTCTCAC+GGG | 0.456735 | tig0025789:+23802 | Msa1424760:CDS |
| CACAATTGCTAGTTGGGGTC+AGG | 0.457568 | tig0025789:+21875 | Msa1424760:CDS |
| GATGGTTACTTGATAGTCTA+CGG | 0.460635 | tig0025789:-23539 | None:intergenic |
| GAGAAATCACAATTGCTAGT+TGG | 0.465725 | tig0025789:+21868 | Msa1424760:CDS |
| TCTCAACTACACTACTATCT+TGG | 0.467867 | tig0025789:-22820 | None:intergenic |
| TGTGTTTATGGGATGTCTCA+CGG | 0.468124 | tig0025789:+23801 | Msa1424760:CDS |
| ACCCAATAGAGTTTGTTCTT+GGG | 0.481411 | tig0025789:+22536 | Msa1424760:CDS |
| AGATAGTAGTGTAGTTGAGA+TGG | 0.502287 | tig0025789:+22823 | Msa1424760:CDS |
| TAAGATGATGACTTCATCAA+TGG | 0.510939 | tig0025789:-23829 | None:intergenic |
| TCTGTTTCCTGTTGTATCCA+AGG | 0.517003 | tig0025789:+21990 | Msa1424760:CDS |
| AAATTAACCTTGGTTAGGCA+AGG | 0.536383 | tig0025789:-22033 | None:intergenic |
| AGTGTAGTTGAGATGGAAGG+TGG | 0.537688 | tig0025789:+22830 | Msa1424760:CDS |
| ATGGTTACTTGATAGTCTAC+GGG | 0.539444 | tig0025789:-23538 | None:intergenic |
| AGTAGTGTAGTTGAGATGGA+AGG | 0.544496 | tig0025789:+22827 | Msa1424760:CDS |
| TTGATGATACCATTGAAGTC+GGG | 0.551346 | tig0025789:+23863 | Msa1424760:CDS |
| ATGAAGTCATCATCTTATGA+AGG | 0.553019 | tig0025789:+23835 | Msa1424760:CDS |
| CTCTAAGCCTTGCCTAACCA+AGG | 0.553634 | tig0025789:+22026 | Msa1424760:CDS |
| ATGAAATGTCAATTGTTACA+AGG | 0.556474 | tig0025789:+21842 | Msa1424760:exon |
| TGGGACAAGCCAGGTTGTGG+GGG | 0.556761 | tig0025789:+22509 | Msa1424760:CDS |
| AAGTGTACGTGGGACAAGCC+AGG | 0.556937 | tig0025789:+22500 | Msa1424760:CDS |
| GCATTGTTGTATGTTGAAAG+TGG | 0.558663 | tig0025789:-22155 | None:intergenic |
| TTAGCAGAAAGGACTGATGA+TGG | 0.562029 | tig0025789:-21925 | None:intergenic |
| ATTGATGATACCATTGAAGT+CGG | 0.565691 | tig0025789:+23862 | Msa1424760:CDS |
| TGGGCATATTATTAGCAGAA+AGG | 0.573682 | tig0025789:-21936 | None:intergenic |
| CAAAAGCATTTGATACGCGC+TGG | 0.577963 | tig0025789:+22231 | Msa1424760:CDS |
| GGAATGCATCCCGACTTCAA+TGG | 0.601024 | tig0025789:-23872 | None:intergenic |
| GTGGGACAAGCCAGGTTGTG+GGG | 0.605722 | tig0025789:+22508 | Msa1424760:CDS |
| TGAAATGTCAATTGTTACAA+GGG | 0.606701 | tig0025789:+21843 | Msa1424760:exon |
| CATATCATATCTCAATCCAA+TGG | 0.607038 | tig0025789:-22198 | None:intergenic |
| GGGACAAGCCAGGTTGTGGG+GGG | 0.611452 | tig0025789:+22510 | Msa1424760:CDS |
| GAAATCACAATTGCTAGTTG+GGG | 0.640389 | tig0025789:+21870 | Msa1424760:CDS |
| ACATCGAGGTTAAGTGTACG+TGG | 0.649453 | tig0025789:+22489 | Msa1424760:CDS |
| CCAGACAATCCAGATTGTAA+CGG | 0.653501 | tig0025789:-22603 | None:intergenic |
| ACTCGATGTCGAAGACCGAG+AGG | 0.696816 | tig0025789:-22571 | None:intergenic |
| CATCGAGGTTAAGTGTACGT+GGG | 0.728547 | tig0025789:+22490 | Msa1424760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATAGATATATAATATA+CGG | + | tig0025789:22315-22334 | Msa1424760:intron | 10.0% |
| !!! | TTTTTTTTCTTCTTATATAA+AGG | + | tig0025789:23686-23705 | Msa1424760:intron | 10.0% |
| !! | TTACATAGATATATAATATA+CGG | + | tig0025789:22315-22334 | Msa1424760:intron | 10.0% |
| !!! | TTTTTTTTCTTCTTATATAA+AGG | + | tig0025789:23686-23705 | Msa1424760:intron | 10.0% |
| !! | TTGTTATAATAAATTAACCT+TGG | - | tig0025789:22046-22065 | None:intergenic | 15.0% |
| !!! | TTATAACAAATACAAACTTT+TGG | + | tig0025789:22057-22076 | Msa1424760:intron | 15.0% |
| !!! | ATATTTTCTTTACTTTCTTA+AGG | + | tig0025789:22627-22646 | Msa1424760:intron | 15.0% |
| !!! | CAATATTATTTTGTAACAAT+TGG | - | tig0025789:23025-23044 | None:intergenic | 15.0% |
| !! | TTGTTATAATAAATTAACCT+TGG | - | tig0025789:22046-22065 | None:intergenic | 15.0% |
| !!! | TTATAACAAATACAAACTTT+TGG | + | tig0025789:22057-22076 | Msa1424760:intron | 15.0% |
| !!! | ATATTTTCTTTACTTTCTTA+AGG | + | tig0025789:22627-22646 | Msa1424760:intron | 15.0% |
| !!! | CAATATTATTTTGTAACAAT+TGG | - | tig0025789:23025-23044 | None:intergenic | 15.0% |
| !! | ATAATAAATTAACCTTGGTT+AGG | - | tig0025789:22041-22060 | None:intergenic | 20.0% |
| !! | ATTGAATTGTAATACAAAAG+AGG | - | tig0025789:23432-23451 | None:intergenic | 20.0% |
| !!! | TTTTCTAATATTTAGTATCG+AGG | + | tig0025789:23597-23616 | Msa1424760:intron | 20.0% |
| !! | TCTTATATAAAGGTAATGTA+AGG | + | tig0025789:23696-23715 | Msa1424760:intron | 20.0% |
| !! | TTCAATTGATCAATTGATAA+TGG | + | tig0025789:23735-23754 | Msa1424760:intron | 20.0% |
| !! | ATAATAAATTAACCTTGGTT+AGG | - | tig0025789:22041-22060 | None:intergenic | 20.0% |
| !! | ATTGAATTGTAATACAAAAG+AGG | - | tig0025789:23432-23451 | None:intergenic | 20.0% |
| !!! | TTTTCTAATATTTAGTATCG+AGG | + | tig0025789:23597-23616 | Msa1424760:intron | 20.0% |
| !! | TCTTATATAAAGGTAATGTA+AGG | + | tig0025789:23696-23715 | Msa1424760:intron | 20.0% |
| !! | TTCAATTGATCAATTGATAA+TGG | + | tig0025789:23735-23754 | Msa1424760:intron | 20.0% |
| ! | ATGAAATGTCAATTGTTACA+AGG | + | tig0025789:21842-21861 | Msa1424760:exon | 25.0% |
| ! | TGAAATGTCAATTGTTACAA+GGG | + | tig0025789:21843-21862 | Msa1424760:exon | 25.0% |
| ! | AGAGCAAATTAAATATTCCT+TGG | - | tig0025789:22010-22029 | None:intergenic | 25.0% |
| !! | CAAATACAAACTTTTGGATT+AGG | + | tig0025789:22063-22082 | Msa1424760:intron | 25.0% |
| ! | ATTTCTGAACTATTGAACTT+TGG | + | tig0025789:22262-22281 | Msa1424760:intron | 25.0% |
| ! | GTTATATTTAAACTGAGAAC+TGG | + | tig0025789:22724-22743 | Msa1424760:intron | 25.0% |
| !!! | AAGTCATATTTTGAGTTAGA+TGG | - | tig0025789:23560-23579 | None:intergenic | 25.0% |
| !! | AGCATTTTATTCAAATGTTC+AGG | + | tig0025789:23760-23779 | Msa1424760:intron | 25.0% |
| ! | ATTCTTACTCTTGTGTTTAT+GGG | + | tig0025789:23790-23809 | Msa1424760:CDS | 25.0% |
| ! | GTAACAATTGACATTTCATA+TGG | - | tig0025789:21841-21860 | None:intergenic | 25.0% |
| ! | ATGAAATGTCAATTGTTACA+AGG | + | tig0025789:21842-21861 | Msa1424760:exon | 25.0% |
| ! | TGAAATGTCAATTGTTACAA+GGG | + | tig0025789:21843-21862 | Msa1424760:exon | 25.0% |
| ! | AGAGCAAATTAAATATTCCT+TGG | - | tig0025789:22010-22029 | None:intergenic | 25.0% |
| !! | CAAATACAAACTTTTGGATT+AGG | + | tig0025789:22063-22082 | Msa1424760:intron | 25.0% |
| ! | ATTTCTGAACTATTGAACTT+TGG | + | tig0025789:22262-22281 | Msa1424760:intron | 25.0% |
| ! | GTTATATTTAAACTGAGAAC+TGG | + | tig0025789:22724-22743 | Msa1424760:intron | 25.0% |
| !!! | AAGTCATATTTTGAGTTAGA+TGG | - | tig0025789:23560-23579 | None:intergenic | 25.0% |
| !! | AGCATTTTATTCAAATGTTC+AGG | + | tig0025789:23760-23779 | Msa1424760:intron | 25.0% |
| ! | ATTCTTACTCTTGTGTTTAT+GGG | + | tig0025789:23790-23809 | Msa1424760:CDS | 25.0% |
| AGAAATCACAATTGCTAGTT+GGG | + | tig0025789:21869-21888 | Msa1424760:CDS | 30.0% | |
| AAATATTCCTTGGATACAAC+AGG | - | tig0025789:22000-22019 | None:intergenic | 30.0% | |
| CATATCATATCTCAATCCAA+TGG | - | tig0025789:22201-22220 | None:intergenic | 30.0% | |
| !!! | TGTAGCATCTTTTTTTGCTA+AGG | + | tig0025789:22292-22311 | Msa1424760:intron | 30.0% |
| ! | ATGTTTTTCCATCTTGAATC+TGG | - | tig0025789:22473-22492 | None:intergenic | 30.0% |
| ! | AGAGTTGATTATAGTGAAAG+AGG | - | tig0025789:22906-22925 | None:intergenic | 30.0% |
| ACTATAATCAACTCTGTTAG+TGG | + | tig0025789:22911-22930 | Msa1424760:intron | 30.0% | |
| CTATAATCAACTCTGTTAGT+GGG | + | tig0025789:22912-22931 | Msa1424760:intron | 30.0% | |
| CTATCAATCGAATTTGATGT+CGG | - | tig0025789:23127-23146 | None:intergenic | 30.0% | |
| ATGTTCATTCGAATTTCAAC+TGG | - | tig0025789:23249-23268 | None:intergenic | 30.0% | |
| !!! | TGAGAGATATGTTTTTTGTG+AGG | + | tig0025789:23367-23386 | Msa1424760:intron | 30.0% |
| ! | AACCAGATTTGAGTTTACTT+TGG | + | tig0025789:23478-23497 | Msa1424760:intron | 30.0% |
| CATTCTTACTCTTGTGTTTA+TGG | + | tig0025789:23789-23808 | Msa1424760:CDS | 30.0% | |
| TAAGATGATGACTTCATCAA+TGG | - | tig0025789:23832-23851 | None:intergenic | 30.0% | |
| ATGAAGTCATCATCTTATGA+AGG | + | tig0025789:23835-23854 | Msa1424760:CDS | 30.0% | |
| ! | ATTGATGATACCATTGAAGT+CGG | + | tig0025789:23862-23881 | Msa1424760:CDS | 30.0% |
| AGAAATCACAATTGCTAGTT+GGG | + | tig0025789:21869-21888 | Msa1424760:CDS | 30.0% | |
| AAATATTCCTTGGATACAAC+AGG | - | tig0025789:22000-22019 | None:intergenic | 30.0% | |
| CATATCATATCTCAATCCAA+TGG | - | tig0025789:22201-22220 | None:intergenic | 30.0% | |
| !!! | TGTAGCATCTTTTTTTGCTA+AGG | + | tig0025789:22292-22311 | Msa1424760:intron | 30.0% |
| ! | ATGTTTTTCCATCTTGAATC+TGG | - | tig0025789:22473-22492 | None:intergenic | 30.0% |
| ! | AGAGTTGATTATAGTGAAAG+AGG | - | tig0025789:22906-22925 | None:intergenic | 30.0% |
| ACTATAATCAACTCTGTTAG+TGG | + | tig0025789:22911-22930 | Msa1424760:intron | 30.0% | |
| CTATAATCAACTCTGTTAGT+GGG | + | tig0025789:22912-22931 | Msa1424760:intron | 30.0% | |
| CTATCAATCGAATTTGATGT+CGG | - | tig0025789:23127-23146 | None:intergenic | 30.0% | |
| ATGTTCATTCGAATTTCAAC+TGG | - | tig0025789:23249-23268 | None:intergenic | 30.0% | |
| !!! | TGAGAGATATGTTTTTTGTG+AGG | + | tig0025789:23367-23386 | Msa1424760:intron | 30.0% |
| ! | AACCAGATTTGAGTTTACTT+TGG | + | tig0025789:23478-23497 | Msa1424760:intron | 30.0% |
| CATTCTTACTCTTGTGTTTA+TGG | + | tig0025789:23789-23808 | Msa1424760:CDS | 30.0% | |
| TAAGATGATGACTTCATCAA+TGG | - | tig0025789:23832-23851 | None:intergenic | 30.0% | |
| ATGAAGTCATCATCTTATGA+AGG | + | tig0025789:23835-23854 | Msa1424760:CDS | 30.0% | |
| ! | ATTGATGATACCATTGAAGT+CGG | + | tig0025789:23862-23881 | Msa1424760:CDS | 30.0% |
| GAGAAATCACAATTGCTAGT+TGG | + | tig0025789:21868-21887 | Msa1424760:CDS | 35.0% | |
| GAAATCACAATTGCTAGTTG+GGG | + | tig0025789:21870-21889 | Msa1424760:CDS | 35.0% | |
| TGGGCATATTATTAGCAGAA+AGG | - | tig0025789:21939-21958 | None:intergenic | 35.0% | |
| AAATTAACCTTGGTTAGGCA+AGG | - | tig0025789:22036-22055 | None:intergenic | 35.0% | |
| GCATTGTTGTATGTTGAAAG+TGG | - | tig0025789:22158-22177 | None:intergenic | 35.0% | |
| TTTGTCTCTCAATTGTCCAT+TGG | + | tig0025789:22182-22201 | Msa1424760:CDS | 35.0% | |
| TTCAAGATGGAAAAACATCG+AGG | + | tig0025789:22475-22494 | Msa1424760:intron | 35.0% | |
| ! | AACCCAATAGAGTTTGTTCT+TGG | + | tig0025789:22535-22554 | Msa1424760:CDS | 35.0% |
| ! | ACCCAATAGAGTTTGTTCTT+GGG | + | tig0025789:22536-22555 | Msa1424760:CDS | 35.0% |
| TCCCAAGAACAAACTCTATT+GGG | - | tig0025789:22540-22559 | None:intergenic | 35.0% | |
| TCTCAACTACACTACTATCT+TGG | - | tig0025789:22823-22842 | None:intergenic | 35.0% | |
| AGATAGTAGTGTAGTTGAGA+TGG | + | tig0025789:22823-22842 | Msa1424760:CDS | 35.0% | |
| CGACATCAAATTCGATTGAT+AGG | + | tig0025789:23125-23144 | Msa1424760:intron | 35.0% | |
| TTCGATTGATAGGAATCTGA+AGG | + | tig0025789:23135-23154 | Msa1424760:intron | 35.0% | |
| CTGAAGGCAATAACAACTTA+AGG | + | tig0025789:23151-23170 | Msa1424760:intron | 35.0% | |
| GACCAAAGTAAACTCAAATC+TGG | - | tig0025789:23483-23502 | None:intergenic | 35.0% | |
| ! | ATGGTTACTTGATAGTCTAC+GGG | - | tig0025789:23541-23560 | None:intergenic | 35.0% |
| ! | GATGGTTACTTGATAGTCTA+CGG | - | tig0025789:23542-23561 | None:intergenic | 35.0% |
| TCAATTGAATGTGTGATCAG+TGG | - | tig0025789:23724-23743 | None:intergenic | 35.0% | |
| ! | TTGATGATACCATTGAAGTC+GGG | + | tig0025789:23863-23882 | Msa1424760:CDS | 35.0% |
| GAGAAATCACAATTGCTAGT+TGG | + | tig0025789:21868-21887 | Msa1424760:CDS | 35.0% | |
| GAAATCACAATTGCTAGTTG+GGG | + | tig0025789:21870-21889 | Msa1424760:CDS | 35.0% | |
| TGGGCATATTATTAGCAGAA+AGG | - | tig0025789:21939-21958 | None:intergenic | 35.0% | |
| AAATTAACCTTGGTTAGGCA+AGG | - | tig0025789:22036-22055 | None:intergenic | 35.0% | |
| GCATTGTTGTATGTTGAAAG+TGG | - | tig0025789:22158-22177 | None:intergenic | 35.0% | |
| TTTGTCTCTCAATTGTCCAT+TGG | + | tig0025789:22182-22201 | Msa1424760:CDS | 35.0% | |
| TTCAAGATGGAAAAACATCG+AGG | + | tig0025789:22475-22494 | Msa1424760:intron | 35.0% | |
| ! | AACCCAATAGAGTTTGTTCT+TGG | + | tig0025789:22535-22554 | Msa1424760:CDS | 35.0% |
| ! | ACCCAATAGAGTTTGTTCTT+GGG | + | tig0025789:22536-22555 | Msa1424760:CDS | 35.0% |
| TCCCAAGAACAAACTCTATT+GGG | - | tig0025789:22540-22559 | None:intergenic | 35.0% | |
| TCTCAACTACACTACTATCT+TGG | - | tig0025789:22823-22842 | None:intergenic | 35.0% | |
| AGATAGTAGTGTAGTTGAGA+TGG | + | tig0025789:22823-22842 | Msa1424760:CDS | 35.0% | |
| CGACATCAAATTCGATTGAT+AGG | + | tig0025789:23125-23144 | Msa1424760:intron | 35.0% | |
| TTCGATTGATAGGAATCTGA+AGG | + | tig0025789:23135-23154 | Msa1424760:intron | 35.0% | |
| CTGAAGGCAATAACAACTTA+AGG | + | tig0025789:23151-23170 | Msa1424760:intron | 35.0% | |
| GACCAAAGTAAACTCAAATC+TGG | - | tig0025789:23483-23502 | None:intergenic | 35.0% | |
| ! | ATGGTTACTTGATAGTCTAC+GGG | - | tig0025789:23541-23560 | None:intergenic | 35.0% |
| ! | GATGGTTACTTGATAGTCTA+CGG | - | tig0025789:23542-23561 | None:intergenic | 35.0% |
| TCAATTGAATGTGTGATCAG+TGG | - | tig0025789:23724-23743 | None:intergenic | 35.0% | |
| ! | TTGATGATACCATTGAAGTC+GGG | + | tig0025789:23863-23882 | Msa1424760:CDS | 35.0% |
| TTAGCAGAAAGGACTGATGA+TGG | - | tig0025789:21928-21947 | None:intergenic | 40.0% | |
| TCTGTTTCCTGTTGTATCCA+AGG | + | tig0025789:21990-22009 | Msa1424760:CDS | 40.0% | |
| TTAACCTTTCTGCAGCGATA+TGG | + | tig0025789:22406-22425 | Msa1424760:intron | 40.0% | |
| TAACCTTTCTGCAGCGATAT+GGG | + | tig0025789:22407-22426 | Msa1424760:intron | 40.0% | |
| AGCGATATGGGTACTATTGT+GGG | + | tig0025789:22419-22438 | Msa1424760:intron | 40.0% | |
| TATTGTGGGCATCAGTGATT+TGG | + | tig0025789:22433-22452 | Msa1424760:intron | 40.0% | |
| ! | GTGATTTGGATCCCTTAATG+TGG | + | tig0025789:22447-22466 | Msa1424760:intron | 40.0% |
| CTTGAATCTGGCCACATTAA+GGG | - | tig0025789:22461-22480 | None:intergenic | 40.0% | |
| TCTTGAATCTGGCCACATTA+AGG | - | tig0025789:22462-22481 | None:intergenic | 40.0% | |
| TAATGTGGCCAGATTCAAGA+TGG | + | tig0025789:22462-22481 | Msa1424760:intron | 40.0% | |
| GTCCCAAGAACAAACTCTAT+TGG | - | tig0025789:22541-22560 | None:intergenic | 40.0% | |
| ! | GGGACATTCTTTTATCCTCT+CGG | + | tig0025789:22556-22575 | Msa1424760:CDS | 40.0% |
| !! | CTTCGACATCGAGTTCTAAA+AGG | + | tig0025789:22580-22599 | Msa1424760:CDS | 40.0% |
| TCTAAAAGGCCGTTACAATC+TGG | + | tig0025789:22594-22613 | Msa1424760:CDS | 40.0% | |
| CCAGACAATCCAGATTGTAA+CGG | - | tig0025789:22606-22625 | None:intergenic | 40.0% | |
| AGTAGTGTAGTTGAGATGGA+AGG | + | tig0025789:22827-22846 | Msa1424760:CDS | 40.0% | |
| AGGTGGTAGTACTCTCAAAA+TGG | + | tig0025789:22847-22866 | Msa1424760:CDS | 40.0% | |
| TGTGTTTATGGGATGTCTCA+CGG | + | tig0025789:23801-23820 | Msa1424760:CDS | 40.0% | |
| ! | GGATGGTAGTTTTCTTTGGA+TGG | - | tig0025789:23896-23915 | None:intergenic | 40.0% |
| TTAGCAGAAAGGACTGATGA+TGG | - | tig0025789:21928-21947 | None:intergenic | 40.0% | |
| TCTGTTTCCTGTTGTATCCA+AGG | + | tig0025789:21990-22009 | Msa1424760:CDS | 40.0% | |
| TTAACCTTTCTGCAGCGATA+TGG | + | tig0025789:22406-22425 | Msa1424760:intron | 40.0% | |
| TAACCTTTCTGCAGCGATAT+GGG | + | tig0025789:22407-22426 | Msa1424760:intron | 40.0% | |
| AGCGATATGGGTACTATTGT+GGG | + | tig0025789:22419-22438 | Msa1424760:intron | 40.0% | |
| TATTGTGGGCATCAGTGATT+TGG | + | tig0025789:22433-22452 | Msa1424760:intron | 40.0% | |
| ! | GTGATTTGGATCCCTTAATG+TGG | + | tig0025789:22447-22466 | Msa1424760:intron | 40.0% |
| CTTGAATCTGGCCACATTAA+GGG | - | tig0025789:22461-22480 | None:intergenic | 40.0% | |
| TCTTGAATCTGGCCACATTA+AGG | - | tig0025789:22462-22481 | None:intergenic | 40.0% | |
| TAATGTGGCCAGATTCAAGA+TGG | + | tig0025789:22462-22481 | Msa1424760:intron | 40.0% | |
| GTCCCAAGAACAAACTCTAT+TGG | - | tig0025789:22541-22560 | None:intergenic | 40.0% | |
| ! | GGGACATTCTTTTATCCTCT+CGG | + | tig0025789:22556-22575 | Msa1424760:CDS | 40.0% |
| !! | CTTCGACATCGAGTTCTAAA+AGG | + | tig0025789:22580-22599 | Msa1424760:CDS | 40.0% |
| TCTAAAAGGCCGTTACAATC+TGG | + | tig0025789:22594-22613 | Msa1424760:CDS | 40.0% | |
| CCAGACAATCCAGATTGTAA+CGG | - | tig0025789:22606-22625 | None:intergenic | 40.0% | |
| AGTAGTGTAGTTGAGATGGA+AGG | + | tig0025789:22827-22846 | Msa1424760:CDS | 40.0% | |
| AGGTGGTAGTACTCTCAAAA+TGG | + | tig0025789:22847-22866 | Msa1424760:CDS | 40.0% | |
| TGTGTTTATGGGATGTCTCA+CGG | + | tig0025789:23801-23820 | Msa1424760:CDS | 40.0% | |
| ! | GGATGGTAGTTTTCTTTGGA+TGG | - | tig0025789:23896-23915 | None:intergenic | 40.0% |
| !! | CAAAAGCATTTGATACGCGC+TGG | + | tig0025789:22231-22250 | Msa1424760:CDS | 45.0% |
| CAGCGATATGGGTACTATTG+TGG | + | tig0025789:22418-22437 | Msa1424760:intron | 45.0% | |
| ACATCGAGGTTAAGTGTACG+TGG | + | tig0025789:22489-22508 | Msa1424760:CDS | 45.0% | |
| CATCGAGGTTAAGTGTACGT+GGG | + | tig0025789:22490-22509 | Msa1424760:CDS | 45.0% | |
| CCGTTACAATCTGGATTGTC+TGG | + | tig0025789:22603-22622 | Msa1424760:CDS | 45.0% | |
| AGTGTAGTTGAGATGGAAGG+TGG | + | tig0025789:22830-22849 | Msa1424760:CDS | 45.0% | |
| GTGTTTATGGGATGTCTCAC+GGG | + | tig0025789:23802-23821 | Msa1424760:CDS | 45.0% | |
| !! | CAAAAGCATTTGATACGCGC+TGG | + | tig0025789:22231-22250 | Msa1424760:CDS | 45.0% |
| CAGCGATATGGGTACTATTG+TGG | + | tig0025789:22418-22437 | Msa1424760:intron | 45.0% | |
| ACATCGAGGTTAAGTGTACG+TGG | + | tig0025789:22489-22508 | Msa1424760:CDS | 45.0% | |
| CATCGAGGTTAAGTGTACGT+GGG | + | tig0025789:22490-22509 | Msa1424760:CDS | 45.0% | |
| CCGTTACAATCTGGATTGTC+TGG | + | tig0025789:22603-22622 | Msa1424760:CDS | 45.0% | |
| AGTGTAGTTGAGATGGAAGG+TGG | + | tig0025789:22830-22849 | Msa1424760:CDS | 45.0% | |
| GTGTTTATGGGATGTCTCAC+GGG | + | tig0025789:23802-23821 | Msa1424760:CDS | 45.0% | |
| !! | ACATATTTATATATATTAAA+AGG | - | tig0025789:22941-22960 | None:intergenic | 5.0% |
| !! | ACATATTTATATATATTAAA+AGG | - | tig0025789:22941-22960 | None:intergenic | 5.0% |
| CACAATTGCTAGTTGGGGTC+AGG | + | tig0025789:21875-21894 | Msa1424760:CDS | 50.0% | |
| GCAGCAACAAGCGCATCAAT+GGG | - | tig0025789:21958-21977 | None:intergenic | 50.0% | |
| AGCAGCAACAAGCGCATCAA+TGG | - | tig0025789:21959-21978 | None:intergenic | 50.0% | |
| CTCTAAGCCTTGCCTAACCA+AGG | + | tig0025789:22026-22045 | Msa1424760:CDS | 50.0% | |
| GTACCCATATCGCTGCAGAA+AGG | - | tig0025789:22413-22432 | None:intergenic | 50.0% | |
| GGAATGCATCCCGACTTCAA+TGG | - | tig0025789:23875-23894 | None:intergenic | 50.0% | |
| CACAATTGCTAGTTGGGGTC+AGG | + | tig0025789:21875-21894 | Msa1424760:CDS | 50.0% | |
| GCAGCAACAAGCGCATCAAT+GGG | - | tig0025789:21958-21977 | None:intergenic | 50.0% | |
| AGCAGCAACAAGCGCATCAA+TGG | - | tig0025789:21959-21978 | None:intergenic | 50.0% | |
| CTCTAAGCCTTGCCTAACCA+AGG | + | tig0025789:22026-22045 | Msa1424760:CDS | 50.0% | |
| GTACCCATATCGCTGCAGAA+AGG | - | tig0025789:22413-22432 | None:intergenic | 50.0% | |
| GGAATGCATCCCGACTTCAA+TGG | - | tig0025789:23875-23894 | None:intergenic | 50.0% | |
| AAGTGTACGTGGGACAAGCC+AGG | + | tig0025789:22500-22519 | Msa1424760:CDS | 55.0% | |
| ACTCGATGTCGAAGACCGAG+AGG | - | tig0025789:22574-22593 | None:intergenic | 55.0% | |
| AAGTGTACGTGGGACAAGCC+AGG | + | tig0025789:22500-22519 | Msa1424760:CDS | 55.0% | |
| ACTCGATGTCGAAGACCGAG+AGG | - | tig0025789:22574-22593 | None:intergenic | 55.0% | |
| ACGTGGGACAAGCCAGGTTG+TGG | + | tig0025789:22506-22525 | Msa1424760:CDS | 60.0% | |
| CGTGGGACAAGCCAGGTTGT+GGG | + | tig0025789:22507-22526 | Msa1424760:CDS | 60.0% | |
| GTGGGACAAGCCAGGTTGTG+GGG | + | tig0025789:22508-22527 | Msa1424760:CDS | 60.0% | |
| TGGGACAAGCCAGGTTGTGG+GGG | + | tig0025789:22509-22528 | Msa1424760:CDS | 60.0% | |
| ! | TGGGTTTTCCCCCCACAACC+TGG | - | tig0025789:22521-22540 | None:intergenic | 60.0% |
| ACGTGGGACAAGCCAGGTTG+TGG | + | tig0025789:22506-22525 | Msa1424760:CDS | 60.0% | |
| CGTGGGACAAGCCAGGTTGT+GGG | + | tig0025789:22507-22526 | Msa1424760:CDS | 60.0% | |
| GTGGGACAAGCCAGGTTGTG+GGG | + | tig0025789:22508-22527 | Msa1424760:CDS | 60.0% | |
| TGGGACAAGCCAGGTTGTGG+GGG | + | tig0025789:22509-22528 | Msa1424760:CDS | 60.0% | |
| ! | TGGGTTTTCCCCCCACAACC+TGG | - | tig0025789:22521-22540 | None:intergenic | 60.0% |
| GGGACAAGCCAGGTTGTGGG+GGG | + | tig0025789:22510-22529 | Msa1424760:CDS | 65.0% | |
| GGGACAAGCCAGGTTGTGGG+GGG | + | tig0025789:22510-22529 | Msa1424760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025789 | gene | 21840 | 23915 | 21840 | ID=Msa1424760;Name=Msa1424760 |
| tig0025789 | mRNA | 21840 | 23915 | 21840 | ID=Msa1424760-mRNA-1;Parent=Msa1424760;Name=Msa1424760-mRNA-1;_AED=0.23;_eAED=0.38;_QI=7|0|0|0.66|0.25|0.33|9|0|276 |
| tig0025789 | exon | 21840 | 22047 | 21840 | ID=Msa1424760-mRNA-1:exon:3948;Parent=Msa1424760-mRNA-1 |
| tig0025789 | exon | 22085 | 22107 | 22085 | ID=Msa1424760-mRNA-1:exon:3949;Parent=Msa1424760-mRNA-1 |
| tig0025789 | exon | 22130 | 22252 | 22130 | ID=Msa1424760-mRNA-1:exon:3950;Parent=Msa1424760-mRNA-1 |
| tig0025789 | exon | 22421 | 22428 | 22421 | ID=Msa1424760-mRNA-1:exon:3951;Parent=Msa1424760-mRNA-1 |
| tig0025789 | exon | 22481 | 22624 | 22481 | ID=Msa1424760-mRNA-1:exon:3952;Parent=Msa1424760-mRNA-1 |
| tig0025789 | exon | 22771 | 22882 | 22771 | ID=Msa1424760-mRNA-1:exon:3953;Parent=Msa1424760-mRNA-1 |
| tig0025789 | exon | 23518 | 23593 | 23518 | ID=Msa1424760-mRNA-1:exon:3954;Parent=Msa1424760-mRNA-1 |
| tig0025789 | exon | 23612 | 23618 | 23612 | ID=Msa1424760-mRNA-1:exon:3955;Parent=Msa1424760-mRNA-1 |
| tig0025789 | exon | 23782 | 23915 | 23782 | ID=Msa1424760-mRNA-1:exon:3956;Parent=Msa1424760-mRNA-1 |
| tig0025789 | five_prime_UTR | 21840 | 21846 | 21840 | ID=Msa1424760-mRNA-1:five_prime_utr;Parent=Msa1424760-mRNA-1 |
| tig0025789 | CDS | 21847 | 22047 | 21847 | ID=Msa1424760-mRNA-1:cds;Parent=Msa1424760-mRNA-1 |
| tig0025789 | CDS | 22085 | 22107 | 22085 | ID=Msa1424760-mRNA-1:cds;Parent=Msa1424760-mRNA-1 |
| tig0025789 | CDS | 22130 | 22252 | 22130 | ID=Msa1424760-mRNA-1:cds;Parent=Msa1424760-mRNA-1 |
| tig0025789 | CDS | 22421 | 22428 | 22421 | ID=Msa1424760-mRNA-1:cds;Parent=Msa1424760-mRNA-1 |
| tig0025789 | CDS | 22481 | 22624 | 22481 | ID=Msa1424760-mRNA-1:cds;Parent=Msa1424760-mRNA-1 |
| tig0025789 | CDS | 22771 | 22882 | 22771 | ID=Msa1424760-mRNA-1:cds;Parent=Msa1424760-mRNA-1 |
| tig0025789 | CDS | 23518 | 23593 | 23518 | ID=Msa1424760-mRNA-1:cds;Parent=Msa1424760-mRNA-1 |
| tig0025789 | CDS | 23612 | 23618 | 23612 | ID=Msa1424760-mRNA-1:cds;Parent=Msa1424760-mRNA-1 |
| tig0025789 | CDS | 23782 | 23915 | 23782 | ID=Msa1424760-mRNA-1:cds;Parent=Msa1424760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
