Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429860 | XP_003603006.1 | 94.372 | 231 | 13 | 0 | 12 | 242 | 78 | 308 | 1.18e-159 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429860 | sp|O48721|HEM4_ARATH | 66.376 | 229 | 75 | 2 | 13 | 239 | 85 | 313 | 3.55e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429860 | G7J5U1 | 94.372 | 231 | 13 | 0 | 12 | 242 | 78 | 308 | 5.62e-160 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0429860 | Msa0500840 | 0.918125 | 2.291166e-86 | -8.615850e-47 |
| Msa0429860 | Msa0500870 | 0.899075 | 2.836887e-77 | -8.615850e-47 |
| Msa0429860 | Msa0745250 | 0.831325 | 1.779647e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429860 | MtrunA17_Chr3g0133641 | 94.372 | 231 | 13 | 0 | 12 | 242 | 78 | 308 | 1.08e-163 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429860 | AT2G26540.1 | 66.376 | 229 | 75 | 2 | 13 | 239 | 85 | 313 | 3.61e-111 | 322 |
| Msa0429860 | AT2G26540.2 | 66.047 | 215 | 71 | 2 | 13 | 225 | 85 | 299 | 9.93e-103 | 300 |
| Msa0429860 | AT2G26540.3 | 65.882 | 170 | 57 | 1 | 13 | 181 | 85 | 254 | 2.70e-78 | 236 |
Find 86 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTATTTGATTAGTTTAT+TGG | 0.152477 | 3_2:-81433095 | Msa0429860:three_prime_UTR |
| CTACACTCCCTCAGAGTTTA+AGG | 0.153526 | 3_2:+81432942 | None:intergenic |
| GCAATTCAGTTGCATGTATT+GGG | 0.291215 | 3_2:-81434524 | Msa0429860:CDS |
| TTGCAGATAATGCATTTGAT+TGG | 0.331352 | 3_2:-81437229 | Msa0429860:intron |
| GGAATTCTTGCCACGTTCTC+TGG | 0.335170 | 3_2:+81438080 | None:intergenic |
| TCTCTGGTGACGACGACTTT+TGG | 0.336746 | 3_2:+81438096 | None:intergenic |
| AAACTCTGAGGGAGTGTAGA+TGG | 0.337770 | 3_2:-81432938 | Msa0429860:three_prime_UTR |
| ATTGTTGTCCTTAGAGCTGC+TGG | 0.341737 | 3_2:-81436464 | Msa0429860:intron |
| ATCCGAAAGGAGATTCTTCC+AGG | 0.344583 | 3_2:+81434557 | None:intergenic |
| CCTTCAAGGCCCGGTCGTGT+TGG | 0.368846 | 3_2:+81434450 | None:intergenic |
| AGCAATTCAGTTGCATGTAT+TGG | 0.375651 | 3_2:-81434525 | Msa0429860:CDS |
| CCAACACGACCGGGCCTTGA+AGG | 0.382919 | 3_2:-81434450 | Msa0429860:CDS |
| CTTCAAGGCCCGGTCGTGTT+GGG | 0.385029 | 3_2:+81434451 | None:intergenic |
| CTAGGAAGCTTGTCGAAATC+AGG | 0.387691 | 3_2:+81437520 | None:intergenic |
| GAAGCATGAAATCAATTGTT+TGG | 0.402913 | 3_2:-81437572 | Msa0429860:CDS |
| GTCATCACTTCTCCCGAGGC+TGG | 0.415094 | 3_2:-81437203 | Msa0429860:CDS |
| TGCAGAAGCAGGATACAAAA+TGG | 0.429168 | 3_2:+81435829 | None:intergenic |
| TTGCTAGCCTTTGCAGAAGC+AGG | 0.435597 | 3_2:+81435818 | None:intergenic |
| GGTGAAGCTACTGTAACAAC+AGG | 0.436046 | 3_2:+81434922 | None:intergenic |
| AGCCTGGAAGAATCTCCTTT+CGG | 0.436206 | 3_2:-81434559 | Msa0429860:CDS |
| CTACCTCAATAAGTCATCAT+AGG | 0.441135 | 3_2:+81433169 | None:intergenic |
| ATCTGATCAACATGTTGAAC+TGG | 0.442184 | 3_2:+81434970 | None:intergenic |
| TGCAGATAATGCATTTGATT+GGG | 0.443776 | 3_2:-81437228 | Msa0429860:intron |
| GCTGCCATGGCAAGAAGATT+AGG | 0.444208 | 3_2:-81434492 | Msa0429860:CDS |
| CGTGTCAGAATAGGCGTTGT+TGG | 0.445317 | 3_2:-81436434 | Msa0429860:CDS |
| AAAAGGCAACATCAAGTGAT+TGG | 0.445912 | 3_2:+81436366 | None:intergenic |
| CTTAAGATTAAACTATAGTT+CGG | 0.455622 | 3_2:+81432785 | None:intergenic |
| TGAAAGCATCCTTGAAGCAT+TGG | 0.457157 | 3_2:-81433195 | Msa0429860:CDS |
| CTCTGCACATCATAGCAATC+TGG | 0.459530 | 3_2:-81433144 | Msa0429860:three_prime_UTR |
| ATTGGTAGGCATTCACATGC+TGG | 0.459552 | 3_2:+81432986 | None:intergenic |
| AACTAAGTGCTCGACTCAAT+TGG | 0.460553 | 3_2:+81432968 | None:intergenic |
| AGAATAGGCGTTGTTGGATC+AGG | 0.460750 | 3_2:-81436428 | Msa0429860:CDS |
| GGATTTGTGATTACCCTTCA+AGG | 0.467965 | 3_2:+81434436 | None:intergenic |
| TACAAAAGACATGCAACAAT+CGG | 0.470966 | 3_2:-81432744 | Msa0429860:three_prime_UTR |
| TAGCTTCACCATCTTCAATT+CGG | 0.479995 | 3_2:-81434909 | Msa0429860:intron |
| ATCTCCTTTCGGATTCCGAC+TGG | 0.480360 | 3_2:-81434548 | Msa0429860:CDS |
| CATAGGATCCCAATGCTTCA+AGG | 0.483571 | 3_2:+81433186 | None:intergenic |
| TAGAAAGACTGAACCAGCCT+CGG | 0.488989 | 3_2:+81437190 | None:intergenic |
| TGTATACCACCCAACACGAC+CGG | 0.493750 | 3_2:-81434460 | Msa0429860:CDS |
| GAAAGCATCCTTGAAGCATT+GGG | 0.496890 | 3_2:-81433194 | Msa0429860:CDS |
| ACTCTACATAAATAAACAGC+TGG | 0.500698 | 3_2:+81433113 | None:intergenic |
| AGTTTATTGGATTGACATTG+TGG | 0.508585 | 3_2:-81433082 | Msa0429860:three_prime_UTR |
| TGTGATTACCCTTCAAGGCC+CGG | 0.515459 | 3_2:+81434441 | None:intergenic |
| TAAGACCGTGATAATTCAAC+CGG | 0.516216 | 3_2:-81432814 | Msa0429860:three_prime_UTR |
| GAGGAAGGGCTTTCAAGTCG+TGG | 0.524123 | 3_2:-81435688 | Msa0429860:CDS |
| GCAAAGGCTAGCAATGAGAT+TGG | 0.524315 | 3_2:-81435809 | Msa0429860:intron |
| GGGATGCCTCGTGTCAGAAT+AGG | 0.529726 | 3_2:-81436443 | Msa0429860:CDS |
| GTCGTGGATTTGAAGTTACA+AGG | 0.531380 | 3_2:-81435672 | Msa0429860:CDS |
| AACTCTGAGGGAGTGTAGAT+GGG | 0.532287 | 3_2:-81432937 | Msa0429860:three_prime_UTR |
| TTTGTATCCTGCTTCTGCAA+AGG | 0.534447 | 3_2:-81435825 | Msa0429860:CDS |
| AACTATAGTTCGGAGCTGAC+CGG | 0.535054 | 3_2:+81432795 | None:intergenic |
| TGGGGAGACAACTGCTGCCA+TGG | 0.540541 | 3_2:-81434505 | Msa0429860:CDS |
| GATCCTATGATGACTTATTG+AGG | 0.547694 | 3_2:-81433172 | Msa0429860:CDS |
| AGAAAGACTGAACCAGCCTC+GGG | 0.549715 | 3_2:+81437191 | None:intergenic |
| AGTTTGTCCTTAAACTCTGA+GGG | 0.549996 | 3_2:-81432949 | Msa0429860:three_prime_UTR |
| TTGTTGTCCTTAGAGCTGCT+GGG | 0.551291 | 3_2:-81436463 | Msa0429860:intron |
| GTTCAGTCTTTCTAGAGGCG+TGG | 0.551620 | 3_2:-81437181 | Msa0429860:CDS |
| GATTGAACTAAACTCAACTA+AGG | 0.552556 | 3_2:+81432847 | None:intergenic |
| AGTTCAACATGTTGATCAGA+TGG | 0.554586 | 3_2:-81434968 | Msa0429860:CDS |
| CAACACGACCGGGCCTTGAA+GGG | 0.558934 | 3_2:-81434449 | Msa0429860:intron |
| GAAGCCTAATCTTCTTGCCA+TGG | 0.560219 | 3_2:+81434488 | None:intergenic |
| CAAGGCCCGGTCGTGTTGGG+TGG | 0.563613 | 3_2:+81434454 | None:intergenic |
| GGAACTCACCGAATTGAAGA+TGG | 0.567974 | 3_2:+81434901 | None:intergenic |
| CAATTCAGTTGCATGTATTG+GGG | 0.573533 | 3_2:-81434523 | Msa0429860:CDS |
| AGCTTACCGCTTAATAAACT+AGG | 0.573783 | 3_2:+81437502 | None:intergenic |
| TTGGTAGGCATTCACATGCT+GGG | 0.578361 | 3_2:+81432987 | None:intergenic |
| TATTGGATTGACATTGTGGA+TGG | 0.579278 | 3_2:-81433078 | Msa0429860:three_prime_UTR |
| AAGCTTCCTAGTTTATTAAG+CGG | 0.582321 | 3_2:-81437508 | Msa0429860:intron |
| GGTTGTCATCACTTCTCCCG+AGG | 0.603408 | 3_2:-81437207 | Msa0429860:CDS |
| GGCTGGTTCAGTCTTTCTAG+AGG | 0.604479 | 3_2:-81437186 | Msa0429860:CDS |
| TAGTTTGTCCTTAAACTCTG+AGG | 0.605443 | 3_2:-81432950 | Msa0429860:three_prime_UTR |
| TGCTCCAGTCGGAATCCGAA+AGG | 0.605771 | 3_2:+81434544 | None:intergenic |
| GTATACCACCCAACACGACC+GGG | 0.609651 | 3_2:-81434459 | Msa0429860:CDS |
| TATTTACATAACCAGAGGAA+GGG | 0.618296 | 3_2:-81435702 | Msa0429860:intron |
| TTGTATTCTTGAGACTCATG+AGG | 0.626049 | 3_2:-81433036 | Msa0429860:three_prime_UTR |
| AAGTGCTCGACTCAATTGGT+AGG | 0.626065 | 3_2:+81432972 | None:intergenic |
| TGCAACTGAATTGCTCCAGT+CGG | 0.630863 | 3_2:+81434533 | None:intergenic |
| CAGTCTTTCTAGAGGCGTGG+AGG | 0.633928 | 3_2:-81437178 | Msa0429860:intron |
| GCTGACCGGTTGAATTATCA+CGG | 0.654332 | 3_2:+81432809 | None:intergenic |
| CCTCGTAGATGCTCAATGAG+CGG | 0.678328 | 3_2:+81437544 | None:intergenic |
| GTGAAGCTACTGTAACAACA+GGG | 0.684647 | 3_2:+81434923 | None:intergenic |
| AAGGATGAATACATATACAA+CGG | 0.685902 | 3_2:-81435653 | Msa0429860:intron |
| CAACAATCGGAAGTGATGAG+CGG | 0.691058 | 3_2:-81432731 | Msa0429860:three_prime_UTR |
| CCGCTCATTGAGCATCTACG+AGG | 0.704354 | 3_2:-81437544 | Msa0429860:CDS |
| ACAACGCCTATTCTGACACG+AGG | 0.726929 | 3_2:+81436437 | None:intergenic |
| TGAAGCTACTGTAACAACAG+GGG | 0.755969 | 3_2:+81434924 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGCATAAAAAATTATTA+GGG | + | chr3_2:81434096-81434115 | None:intergenic | 10.0% |
| !! | AAATAGCATAAAAAATTATT+AGG | + | chr3_2:81434097-81434116 | None:intergenic | 10.0% |
| !!! | TTTTTTATGCTATTTTAATT+AGG | - | chr3_2:81434102-81434121 | Msa0429860:intron | 10.0% |
| !!! | CAAAAATAGTAAATTTATTT+TGG | - | chr3_2:81435504-81435523 | Msa0429860:intron | 10.0% |
| !! | TTCAATAAATAATTATCATT+TGG | - | chr3_2:81435579-81435598 | Msa0429860:intron | 10.0% |
| !!! | TATATTTTTTTAAAATGATG+TGG | - | chr3_2:81436929-81436948 | Msa0429860:intron | 10.0% |
| !! | AAAAAAGAAAGAAAAAAAAA+AGG | + | chr3_2:81437457-81437476 | None:intergenic | 10.0% |
| !!! | TTATATTATTTTAGGGAAAA+AGG | + | chr3_2:81433086-81433105 | None:intergenic | 15.0% |
| !! | ATTTCAATAAAATGAGAAAT+AGG | - | chr3_2:81433151-81433170 | Msa0429860:exon | 15.0% |
| !! | AATCATTTGAAGATAATTAA+AGG | + | chr3_2:81433786-81433805 | None:intergenic | 15.0% |
| !!! | TAATTATCTTCAAATGATTT+TGG | - | chr3_2:81433787-81433806 | Msa0429860:intron | 15.0% |
| !! | AAAATTTCAAAATCATTTGA+AGG | + | chr3_2:81433902-81433921 | None:intergenic | 15.0% |
| !! | AAAAATTATTAGGGAAAAAA+CGG | + | chr3_2:81434087-81434106 | None:intergenic | 15.0% |
| !! | ACAAAATAATAGTAAGATTT+GGG | + | chr3_2:81434628-81434647 | None:intergenic | 15.0% |
| !!! | TATATTTTCTTGAAAAAAAG+GGG | + | chr3_2:81435230-81435249 | None:intergenic | 15.0% |
| !!! | CTATATTTTCTTGAAAAAAA+GGG | + | chr3_2:81435231-81435250 | None:intergenic | 15.0% |
| !!! | ACTATATTTTCTTGAAAAAA+AGG | + | chr3_2:81435232-81435251 | None:intergenic | 15.0% |
| !! | AAAAAATTTGATTGCAAAAA+TGG | - | chr3_2:81435706-81435725 | Msa0429860:intron | 15.0% |
| !!! | TATATGTGTTTTTTAAATGA+AGG | + | chr3_2:81436641-81436660 | None:intergenic | 15.0% |
| !!! | TATTGATTAACAATAAACAT+GGG | + | chr3_2:81436776-81436795 | None:intergenic | 15.0% |
| !! | TATTGACAAATTGTAACATT+AGG | - | chr3_2:81433184-81433203 | Msa0429860:CDS | 20.0% |
| !!! | TTAAGTTGAAAAAATCATCA+TGG | + | chr3_2:81433451-81433470 | None:intergenic | 20.0% |
| !!! | TTCAATGTTTTTAATTGTTG+TGG | - | chr3_2:81434235-81434254 | Msa0429860:intron | 20.0% |
| !! | AAGTTACAAAAGAAAAAAAG+AGG | + | chr3_2:81434300-81434319 | None:intergenic | 20.0% |
| !! | AATTAAGACTGTTAATCATT+TGG | + | chr3_2:81434354-81434373 | None:intergenic | 20.0% |
| !! | AAGTGTAAACTAAGTTTAAA+TGG | - | chr3_2:81434523-81434542 | Msa0429860:CDS | 20.0% |
| !! | CACAAAATAATAGTAAGATT+TGG | + | chr3_2:81434629-81434648 | None:intergenic | 20.0% |
| !!! | CAAATCTTACTATTATTTTG+TGG | - | chr3_2:81434627-81434646 | Msa0429860:intron | 20.0% |
| !!! | TATTATTTTGTGGATATTCA+AGG | - | chr3_2:81434637-81434656 | Msa0429860:intron | 20.0% |
| !! | ACTACATAATAAATTTACTC+CGG | - | chr3_2:81434764-81434783 | Msa0429860:intron | 20.0% |
| !!! | ATTTAATATTTTTCAGCAAC+AGG | - | chr3_2:81434939-81434958 | Msa0429860:CDS | 20.0% |
| !!! | GTAGTTTTATTTGCAATTTT+GGG | + | chr3_2:81434987-81435006 | None:intergenic | 20.0% |
| !! | GAAACTATTAAAAAACTTGA+AGG | + | chr3_2:81435974-81435993 | None:intergenic | 20.0% |
| !! | TACTATATGTAGATTTGAAA+TGG | + | chr3_2:81436001-81436020 | None:intergenic | 20.0% |
| !!! | ATAACAAGCTCTTTTATTTT+TGG | - | chr3_2:81436566-81436585 | Msa0429860:intron | 20.0% |
| !!! | GTATTGATTAACAATAAACA+TGG | + | chr3_2:81436777-81436796 | None:intergenic | 20.0% |
| !!! | TTTAAAATGATGTGGTTAAA+TGG | - | chr3_2:81436937-81436956 | Msa0429860:intron | 20.0% |
| !!! | AGAGTATTTGATTAGTTTAT+TGG | - | chr3_2:81437740-81437759 | Msa0429860:intron | 20.0% |
| !!! | TAAGATTTTCATGTTTTGTA+TGG | - | chr3_2:81437943-81437962 | Msa0429860:intron | 20.0% |
| !! | CTTAAGATTAAACTATAGTT+CGG | + | chr3_2:81438053-81438072 | None:intergenic | 20.0% |
| ! | TTAGATATCAATCCACATAA+AGG | + | chr3_2:81433392-81433411 | None:intergenic | 25.0% |
| ! | ATTTGTGTTATCATGTGTAT+CGG | + | chr3_2:81433509-81433528 | None:intergenic | 25.0% |
| ! | TTAATGAGTGAAAAGTGATA+AGG | + | chr3_2:81433563-81433582 | None:intergenic | 25.0% |
| !! | AATTTTGAATCTACTGTTGA+TGG | - | chr3_2:81433811-81433830 | Msa0429860:intron | 25.0% |
| ! | AAATCATTTGAAGGTAACTA+AGG | + | chr3_2:81433893-81433912 | None:intergenic | 25.0% |
| ! | GTTAATATTGAAGGGAAAAA+TGG | + | chr3_2:81433932-81433951 | None:intergenic | 25.0% |
| !! | TTTTCCCTTCAATATTAACT+TGG | - | chr3_2:81433933-81433952 | Msa0429860:intron | 25.0% |
| ! | ATGACTTAGATTATACATCA+AGG | + | chr3_2:81434175-81434194 | None:intergenic | 25.0% |
| ! | TTACACTTAACTGATAAACA+TGG | + | chr3_2:81434511-81434530 | None:intergenic | 25.0% |
| ! | TTATCTTGGAACTATTGTTA+TGG | + | chr3_2:81434671-81434690 | None:intergenic | 25.0% |
| ! | ACTATTATTCTGATACTGAT+TGG | + | chr3_2:81434848-81434867 | None:intergenic | 25.0% |
| !!! | GAAGCTTGTTTTCAATAAAA+TGG | - | chr3_2:81434878-81434897 | Msa0429860:intron | 25.0% |
| ! | GTTGTGAAAGAAACTTATTA+AGG | - | chr3_2:81434916-81434935 | Msa0429860:CDS | 25.0% |
| !!! | GGTAGTTTTATTTGCAATTT+TGG | + | chr3_2:81434988-81435007 | None:intergenic | 25.0% |
| ! | AAGGATGAATACATATACAA+CGG | - | chr3_2:81435182-81435201 | Msa0429860:intron | 25.0% |
| ! | GTATTTGATATAAAATGCAC+AGG | + | chr3_2:81435532-81435551 | None:intergenic | 25.0% |
| ! | TGCTTATTTGATTGCAAAAA+TGG | - | chr3_2:81435731-81435750 | Msa0429860:intron | 25.0% |
| ! | TAAAAAACTTGAAGGCAAAA+GGG | + | chr3_2:81435966-81435985 | None:intergenic | 25.0% |
| ! | TTAAAAAACTTGAAGGCAAA+AGG | + | chr3_2:81435967-81435986 | None:intergenic | 25.0% |
| !! | TTTTATACTAACTGTGTAAG+CGG | - | chr3_2:81436038-81436057 | Msa0429860:intron | 25.0% |
| !! | AATACGTATGACATTTTCTT+AGG | - | chr3_2:81436202-81436221 | Msa0429860:intron | 25.0% |
| !!! | TAACAGGTTTTGAATACTTT+AGG | + | chr3_2:81436471-81436490 | None:intergenic | 25.0% |
| ! | CTCTTTAGCATATATTTAAC+AGG | + | chr3_2:81436487-81436506 | None:intergenic | 25.0% |
| !!! | CTTTTATTTTTGGAAATTGC+AGG | - | chr3_2:81436576-81436595 | Msa0429860:intron | 25.0% |
| ! | TCGAGTTAGTAAAAAGTTAT+GGG | + | chr3_2:81436670-81436689 | None:intergenic | 25.0% |
| !! | TTCGAGTTAGTAAAAAGTTA+TGG | + | chr3_2:81436671-81436690 | None:intergenic | 25.0% |
| ! | TTTCACTTCATTAAGCTATA+TGG | - | chr3_2:81436732-81436751 | Msa0429860:intron | 25.0% |
| ! | TTGTTAATCAATACACATGA+TGG | - | chr3_2:81436783-81436802 | Msa0429860:intron | 25.0% |
| ! | AGTAGCATATAAAAGATACA+TGG | + | chr3_2:81437285-81437304 | None:intergenic | 25.0% |
| !! | ATTAGAAGTATAGACAAGTT+TGG | - | chr3_2:81437395-81437414 | Msa0429860:intron | 25.0% |
| ! | TAATTGATTGCAAGTATTTC+AGG | - | chr3_2:81437522-81437541 | Msa0429860:CDS | 25.0% |
| ! | AATTGATTGCAAGTATTTCA+GGG | - | chr3_2:81437523-81437542 | Msa0429860:CDS | 25.0% |
| ! | AGAAAGAAGATTGTCAAAAA+CGG | + | chr3_2:81437606-81437625 | None:intergenic | 25.0% |
| GTAATGTAATGTAATGCGTT+AGG | + | chr3_2:81432835-81432854 | None:intergenic | 30.0% | |
| GAAGCATGAAATCAATTGTT+TGG | - | chr3_2:81433263-81433282 | Msa0429860:intron | 30.0% | |
| AAGCTTCCTAGTTTATTAAG+CGG | - | chr3_2:81433327-81433346 | Msa0429860:intron | 30.0% | |
| ATATCTAAATCGACATAGTG+TGG | - | chr3_2:81433404-81433423 | Msa0429860:intron | 30.0% | |
| CACTCATTAATTTCTTCTCA+TGG | - | chr3_2:81433573-81433592 | Msa0429860:intron | 30.0% | |
| TTGCAGATAATGCATTTGAT+TGG | - | chr3_2:81433606-81433625 | Msa0429860:intron | 30.0% | |
| TGCAGATAATGCATTTGATT+GGG | - | chr3_2:81433607-81433626 | Msa0429860:intron | 30.0% | |
| CACTCCAAGTTAATATTGAA+GGG | + | chr3_2:81433940-81433959 | None:intergenic | 30.0% | |
| AATTTAGGTAAACCTCATCA+TGG | + | chr3_2:81433998-81434017 | None:intergenic | 30.0% | |
| CAACAGTCTCTACAAAATTT+AGG | + | chr3_2:81434013-81434032 | None:intergenic | 30.0% | |
| ! | TAAACATGGATACCTTTTGA+AGG | + | chr3_2:81434497-81434516 | None:intergenic | 30.0% |
| GACATAAATTTCACATTCTC+CGG | + | chr3_2:81434786-81434805 | None:intergenic | 30.0% | |
| !! | ATCTTTAGCCTTTTGTTAGT+AGG | - | chr3_2:81434811-81434830 | Msa0429860:intron | 30.0% |
| TCTGATATTTACATAACCAG+AGG | - | chr3_2:81435128-81435147 | Msa0429860:intron | 30.0% | |
| ATATTTACATAACCAGAGGA+AGG | - | chr3_2:81435132-81435151 | Msa0429860:intron | 30.0% | |
| TATTTACATAACCAGAGGAA+GGG | - | chr3_2:81435133-81435152 | Msa0429860:intron | 30.0% | |
| ATTGCCTGTAATATGTTTCA+TGG | - | chr3_2:81435339-81435358 | Msa0429860:intron | 30.0% | |
| AATATGTTTCATGGTGTGTT+TGG | - | chr3_2:81435348-81435367 | Msa0429860:intron | 30.0% | |
| TGGAGGAAAATGTTACAAAA+AGG | - | chr3_2:81435441-81435460 | Msa0429860:intron | 30.0% | |
| GGAGGAAAATGTTACAAAAA+GGG | - | chr3_2:81435442-81435461 | Msa0429860:intron | 30.0% | |
| GAGGAAAATGTTACAAAAAG+GGG | - | chr3_2:81435443-81435462 | Msa0429860:intron | 30.0% | |
| AGGAAAATGTTACAAAAAGG+GGG | - | chr3_2:81435444-81435463 | Msa0429860:intron | 30.0% | |
| TATCATGTGCAAACTTGTAT+AGG | - | chr3_2:81435472-81435491 | Msa0429860:intron | 30.0% | |
| TAACCTATGCAATATTGCAT+AGG | - | chr3_2:81435610-81435629 | Msa0429860:intron | 30.0% | |
| AATCCTATGCAATATTGCAT+AGG | + | chr3_2:81435616-81435635 | None:intergenic | 30.0% | |
| TTTATACTAACTGTGTAAGC+GGG | - | chr3_2:81436039-81436058 | Msa0429860:intron | 30.0% | |
| TGCAGGTTAAAAAATCAGTT+GGG | + | chr3_2:81436252-81436271 | None:intergenic | 30.0% | |
| TTGCAGGTTAAAAAATCAGT+TGG | + | chr3_2:81436253-81436272 | None:intergenic | 30.0% | |
| !! | ACCTTTGAGAGAATACTTTT+GGG | - | chr3_2:81436422-81436441 | Msa0429860:CDS | 30.0% |
| TTGTGTGAACTATTTCAAAG+AGG | + | chr3_2:81436541-81436560 | None:intergenic | 30.0% | |
| !! | AATGCTTTTTATTTCGTCGA+TGG | - | chr3_2:81436997-81437016 | Msa0429860:intron | 30.0% |
| TAGTATTACACAGCATTTAG+AGG | + | chr3_2:81437135-81437154 | None:intergenic | 30.0% | |
| TAAATGCTGTGTAATACTAG+TGG | - | chr3_2:81437136-81437155 | Msa0429860:intron | 30.0% | |
| TGTTGTTGAAGCTGAATTTA+TGG | - | chr3_2:81437306-81437325 | Msa0429860:intron | 30.0% | |
| ACTCTACATAAATAAACAGC+TGG | + | chr3_2:81437725-81437744 | None:intergenic | 30.0% | |
| AGTTTATTGGATTGACATTG+TGG | - | chr3_2:81437753-81437772 | Msa0429860:intron | 30.0% | |
| GATTGAACTAAACTCAACTA+AGG | + | chr3_2:81437991-81438010 | None:intergenic | 30.0% | |
| TACAAAAGACATGCAACAAT+CGG | - | chr3_2:81438091-81438110 | Msa0429860:intron | 30.0% | |
| ! | AAACCAAGCTGATAATGTCA+CGG | + | chr3_2:81433119-81433138 | None:intergenic | 35.0% |
| AGCTTACCGCTTAATAAACT+AGG | + | chr3_2:81433336-81433355 | None:intergenic | 35.0% | |
| TTTATTAAGCGGTAAGCTCT+TGG | - | chr3_2:81433338-81433357 | Msa0429860:intron | 35.0% | |
| ! | TGGAATGATTTGTAAGAAGC+TGG | - | chr3_2:81433358-81433377 | Msa0429860:intron | 35.0% |
| ! | GGAATGATTTGTAAGAAGCT+GGG | - | chr3_2:81433359-81433378 | Msa0429860:intron | 35.0% |
| GCACTCCAAGTTAATATTGA+AGG | + | chr3_2:81433941-81433960 | None:intergenic | 35.0% | |
| ATGGATAGAATGACTTTGGA+GGG | + | chr3_2:81433979-81433998 | None:intergenic | 35.0% | |
| CATCATGGATAGAATGACTT+TGG | + | chr3_2:81433983-81434002 | None:intergenic | 35.0% | |
| AAGTCATTCTATCCATGATG+AGG | - | chr3_2:81433983-81434002 | Msa0429860:intron | 35.0% | |
| AAAAGGCAACATCAAGTGAT+TGG | + | chr3_2:81434472-81434491 | None:intergenic | 35.0% | |
| !! | GATACCTTTTGAAGGTGAAA+AGG | + | chr3_2:81434489-81434508 | None:intergenic | 35.0% |
| TAGTTCCAAGATAAGCATCT+AGG | - | chr3_2:81434677-81434696 | Msa0429860:intron | 35.0% | |
| AGTGATCACCTACTAACAAA+AGG | + | chr3_2:81434822-81434841 | None:intergenic | 35.0% | |
| CACACCATGAAACATATTAC+AGG | + | chr3_2:81435346-81435365 | None:intergenic | 35.0% | |
| GACAAAATACATGTCATAGC+AGG | + | chr3_2:81435399-81435418 | None:intergenic | 35.0% | |
| !! | GATTGCAAAAATGGTTTGCT+TGG | - | chr3_2:81435715-81435734 | Msa0429860:intron | 35.0% |
| !! | AAAAATGGTTTGCTTGGCTT+TGG | - | chr3_2:81435746-81435765 | Msa0429860:intron | 35.0% |
| AGTGTGAGAAATAGTTGGTT+AGG | + | chr3_2:81435773-81435792 | None:intergenic | 35.0% | |
| ! | AACCAACTATTTCTCACACT+CGG | - | chr3_2:81435773-81435792 | Msa0429860:intron | 35.0% |
| TGACGGCTAAGTTAGAATTA+GGG | + | chr3_2:81435841-81435860 | None:intergenic | 35.0% | |
| ATCTGATCAACATGTTGAAC+TGG | + | chr3_2:81435868-81435887 | None:intergenic | 35.0% | |
| AGTTCAACATGTTGATCAGA+TGG | - | chr3_2:81435867-81435886 | Msa0429860:CDS | 35.0% | |
| TAGCTTCACCATCTTCAATT+CGG | - | chr3_2:81435926-81435945 | Msa0429860:intron | 35.0% | |
| TACATGTTGTACTTCCTTGA+TGG | - | chr3_2:81436065-81436084 | Msa0429860:intron | 35.0% | |
| TTAAGTTAACGACTCCATCA+AGG | + | chr3_2:81436082-81436101 | None:intergenic | 35.0% | |
| AGCAATTCAGTTGCATGTAT+TGG | - | chr3_2:81436310-81436329 | Msa0429860:intron | 35.0% | |
| GCAATTCAGTTGCATGTATT+GGG | - | chr3_2:81436311-81436330 | Msa0429860:intron | 35.0% | |
| CAATTCAGTTGCATGTATTG+GGG | - | chr3_2:81436312-81436331 | Msa0429860:intron | 35.0% | |
| !! | CAAAAGTATTCTCTCAAAGG+TGG | + | chr3_2:81436423-81436442 | None:intergenic | 35.0% |
| !! | CACCTTTGAGAGAATACTTT+TGG | - | chr3_2:81436421-81436440 | Msa0429860:CDS | 35.0% |
| !! | CCTTTGAGAGAATACTTTTG+GGG | - | chr3_2:81436423-81436442 | Msa0429860:CDS | 35.0% |
| GAATCACAAGAAACATGACT+TGG | + | chr3_2:81437108-81437127 | None:intergenic | 35.0% | |
| TCAAAAACGGATGTACTAAC+AGG | + | chr3_2:81437593-81437612 | None:intergenic | 35.0% | |
| GATCCTATGATGACTTATTG+AGG | - | chr3_2:81437663-81437682 | Msa0429860:intron | 35.0% | |
| CTACCTCAATAAGTCATCAT+AGG | + | chr3_2:81437669-81437688 | None:intergenic | 35.0% | |
| TATTGGATTGACATTGTGGA+TGG | - | chr3_2:81437757-81437776 | Msa0429860:intron | 35.0% | |
| TTGTATTCTTGAGACTCATG+AGG | - | chr3_2:81437799-81437818 | Msa0429860:intron | 35.0% | |
| !!! | TGCTGGGAATTTTTTACTAG+TGG | + | chr3_2:81437835-81437854 | None:intergenic | 35.0% |
| ! | TAGTTTGTCCTTAAACTCTG+AGG | - | chr3_2:81437885-81437904 | Msa0429860:intron | 35.0% |
| AGTTTGTCCTTAAACTCTGA+GGG | - | chr3_2:81437886-81437905 | Msa0429860:intron | 35.0% | |
| TAAGACCGTGATAATTCAAC+CGG | - | chr3_2:81438021-81438040 | Msa0429860:intron | 35.0% | |
| TTCCAAGCTTATCACTGCTT+TGG | - | chr3_2:81432774-81432793 | Msa0429860:three_prime_UTR | 40.0% | |
| TACCAAAGCAGTGATAAGCT+TGG | + | chr3_2:81432779-81432798 | None:intergenic | 40.0% | |
| !! | ATCAGCTTGGTTTGCAATTC+AGG | - | chr3_2:81433126-81433145 | Msa0429860:three_prime_UTR | 40.0% |
| CATAGACGCTGAAACTACTT+TGG | - | chr3_2:81433217-81433236 | Msa0429860:intron | 40.0% | |
| GTAATTCCAATGTCAAGTGC+AGG | - | chr3_2:81433239-81433258 | Msa0429860:intron | 40.0% | |
| ! | TGATTTGTAAGAAGCTGGGT+TGG | - | chr3_2:81433363-81433382 | Msa0429860:intron | 40.0% |
| GATTTGTAAGAAGCTGGGTT+GGG | - | chr3_2:81433364-81433383 | Msa0429860:intron | 40.0% | |
| GGTAAGGATTTAGGCTTCTT+TGG | - | chr3_2:81433678-81433697 | Msa0429860:intron | 40.0% | |
| ! | TGGATAGAATGACTTTGGAG+GGG | + | chr3_2:81433978-81433997 | None:intergenic | 40.0% |
| CATGGATAGAATGACTTTGG+AGG | + | chr3_2:81433980-81433999 | None:intergenic | 40.0% | |
| !! | AGGTACTGCAAGCATTTTCA+AGG | - | chr3_2:81434427-81434446 | Msa0429860:intron | 40.0% |
| ! | GTTGCCTTTTCACCTTCAAA+AGG | - | chr3_2:81434482-81434501 | Msa0429860:CDS | 40.0% |
| CTTGAGTTACTCATCCATCA+TGG | + | chr3_2:81434583-81434602 | None:intergenic | 40.0% | |
| TCCAAGATAAGCATCTAGGT+AGG | - | chr3_2:81434681-81434700 | Msa0429860:intron | 40.0% | |
| ACCTACCTAGATGCTTATCT+TGG | + | chr3_2:81434685-81434704 | None:intergenic | 40.0% | |
| ! | CTGTTACTTCTGTGAATCAG+TGG | - | chr3_2:81434737-81434756 | Msa0429860:intron | 40.0% |
| TGCAGAAGCAGGATACAAAA+TGG | + | chr3_2:81435009-81435028 | None:intergenic | 40.0% | |
| TTTGTATCCTGCTTCTGCAA+AGG | - | chr3_2:81435010-81435029 | Msa0429860:intron | 40.0% | |
| ! | GTCGTGGATTTGAAGTTACA+AGG | - | chr3_2:81435163-81435182 | Msa0429860:intron | 40.0% |
| CTTGAAAAAAAGGGGACACA+AGG | + | chr3_2:81435222-81435241 | None:intergenic | 40.0% | |
| GTGTGTCACATTATGCAGTT+TGG | - | chr3_2:81435421-81435440 | Msa0429860:intron | 40.0% | |
| TGTCACATTATGCAGTTTGG+AGG | - | chr3_2:81435424-81435443 | Msa0429860:intron | 40.0% | |
| ATAGGATTGACAAACCCTAC+CGG | - | chr3_2:81435628-81435647 | Msa0429860:intron | 40.0% | |
| ! | TGTAGAAGTATATGCATGCC+CGG | + | chr3_2:81435650-81435669 | None:intergenic | 40.0% |
| TCTCACACTCGGACTATTTA+TGG | - | chr3_2:81435784-81435803 | Msa0429860:intron | 40.0% | |
| CTGACGGCTAAGTTAGAATT+AGG | + | chr3_2:81435842-81435861 | None:intergenic | 40.0% | |
| CTAATTCTAACTTAGCCGTC+AGG | - | chr3_2:81435840-81435859 | Msa0429860:CDS | 40.0% | |
| TGAAGCTACTGTAACAACAG+GGG | + | chr3_2:81435914-81435933 | None:intergenic | 40.0% | |
| GTGAAGCTACTGTAACAACA+GGG | + | chr3_2:81435915-81435934 | None:intergenic | 40.0% | |
| TTGAAGGCAAAAGGGCAATA+AGG | + | chr3_2:81435958-81435977 | None:intergenic | 40.0% | |
| ! | CTTAACCTTTTCGTACCTGT+TGG | - | chr3_2:81436097-81436116 | Msa0429860:intron | 40.0% |
| CTTAACCAACAGGTACGAAA+AGG | + | chr3_2:81436105-81436124 | None:intergenic | 40.0% | |
| CATTAAGACGCTTAACCAAC+AGG | + | chr3_2:81436115-81436134 | None:intergenic | 40.0% | |
| AAGCGTCTTAATGACTCTTG+AGG | - | chr3_2:81436122-81436141 | Msa0429860:intron | 40.0% | |
| GGATTTGTGATTACCCTTCA+AGG | + | chr3_2:81436402-81436421 | None:intergenic | 40.0% | |
| !! | CCCCAAAAGTATTCTCTCAA+AGG | + | chr3_2:81436426-81436445 | None:intergenic | 40.0% |
| AACTTGAGTCACTCCTATGT+GGG | + | chr3_2:81436607-81436626 | None:intergenic | 40.0% | |
| AAACTTGAGTCACTCCTATG+TGG | + | chr3_2:81436608-81436627 | None:intergenic | 40.0% | |
| !! | TCCATTGTTGTCTGTTTCTG+CGG | - | chr3_2:81437066-81437085 | Msa0429860:intron | 40.0% |
| ATCTTCTTTCTCCTGACAGA+TGG | - | chr3_2:81437615-81437634 | Msa0429860:intron | 40.0% | |
| TCTTCTTTCTCCTGACAGAT+GGG | - | chr3_2:81437616-81437635 | Msa0429860:intron | 40.0% | |
| !! | TGAAAGCATCCTTGAAGCAT+TGG | - | chr3_2:81437640-81437659 | Msa0429860:intron | 40.0% |
| !! | GAAAGCATCCTTGAAGCATT+GGG | - | chr3_2:81437641-81437660 | Msa0429860:intron | 40.0% |
| AACTAAGTGCTCGACTCAAT+TGG | + | chr3_2:81437870-81437889 | None:intergenic | 40.0% | |
| ATGCCGTGACATTATCAGCT+TGG | - | chr3_2:81433113-81433132 | Msa0429860:three_prime_UTR | 45.0% | |
| CTAGGAAGCTTGTCGAAATC+AGG | + | chr3_2:81433318-81433337 | None:intergenic | 45.0% | |
| CGACATAGTGTGGAGAAACA+AGG | - | chr3_2:81433414-81433433 | Msa0429860:intron | 45.0% | |
| TAGAAAGACTGAACCAGCCT+CGG | + | chr3_2:81433648-81433667 | None:intergenic | 45.0% | |
| ATTGTTGTCCTTAGAGCTGC+TGG | - | chr3_2:81434371-81434390 | Msa0429860:intron | 45.0% | |
| TTGTTGTCCTTAGAGCTGCT+GGG | - | chr3_2:81434372-81434391 | Msa0429860:intron | 45.0% | |
| ! | AGAATAGGCGTTGTTGGATC+AGG | - | chr3_2:81434407-81434426 | Msa0429860:intron | 45.0% |
| GCAACTGGAGACATAAATGC+AGG | + | chr3_2:81434551-81434570 | None:intergenic | 45.0% | |
| GCAAAGGCTAGCAATGAGAT+TGG | - | chr3_2:81435026-81435045 | Msa0429860:intron | 45.0% | |
| TAGGATTGACAAACCCTACC+GGG | - | chr3_2:81435629-81435648 | Msa0429860:intron | 45.0% | |
| AAGTATATGCATGCCCGGTA+GGG | + | chr3_2:81435645-81435664 | None:intergenic | 45.0% | |
| CGATCATAAGCTACTGATGC+TGG | + | chr3_2:81435673-81435692 | None:intergenic | 45.0% | |
| GTCCGAGTGTGAGAAATAGT+TGG | + | chr3_2:81435778-81435797 | None:intergenic | 45.0% | |
| CATGTTGAACTGGTACCTGA+CGG | + | chr3_2:81435858-81435877 | None:intergenic | 45.0% | |
| GGTGAAGCTACTGTAACAAC+AGG | + | chr3_2:81435916-81435935 | None:intergenic | 45.0% | |
| GGAACTCACCGAATTGAAGA+TGG | + | chr3_2:81435937-81435956 | None:intergenic | 45.0% | |
| ! | TTTTAACCTGCAACAGAGCC+TGG | - | chr3_2:81436260-81436279 | Msa0429860:intron | 45.0% |
| AGCCTGGAAGAATCTCCTTT+CGG | - | chr3_2:81436276-81436295 | Msa0429860:intron | 45.0% | |
| ATCCGAAAGGAGATTCTTCC+AGG | + | chr3_2:81436281-81436300 | None:intergenic | 45.0% | |
| TGCAACTGAATTGCTCCAGT+CGG | + | chr3_2:81436305-81436324 | None:intergenic | 45.0% | |
| GAAGCCTAATCTTCTTGCCA+TGG | + | chr3_2:81436350-81436369 | None:intergenic | 45.0% | |
| AGAGGACAAACTTCTCCATG+TGG | + | chr3_2:81436523-81436542 | None:intergenic | 45.0% | |
| ACTTGAGTCACTCCTATGTG+GGG | + | chr3_2:81436606-81436625 | None:intergenic | 45.0% | |
| AACAGACAACAATGGATGCG+AGG | + | chr3_2:81437062-81437081 | None:intergenic | 45.0% | |
| !! | CCATTGTTGTCTGTTTCTGC+GGG | - | chr3_2:81437067-81437086 | Msa0429860:intron | 45.0% |
| ATGCTTTCAACCCATCTGTC+AGG | + | chr3_2:81437629-81437648 | None:intergenic | 45.0% | |
| CATAGGATCCCAATGCTTCA+AGG | + | chr3_2:81437652-81437671 | None:intergenic | 45.0% | |
| CTCTGCACATCATAGCAATC+TGG | - | chr3_2:81437691-81437710 | Msa0429860:intron | 45.0% | |
| TTGGTAGGCATTCACATGCT+GGG | + | chr3_2:81437851-81437870 | None:intergenic | 45.0% | |
| ATTGGTAGGCATTCACATGC+TGG | + | chr3_2:81437852-81437871 | None:intergenic | 45.0% | |
| AAGTGCTCGACTCAATTGGT+AGG | + | chr3_2:81437866-81437885 | None:intergenic | 45.0% | |
| CTACACTCCCTCAGAGTTTA+AGG | + | chr3_2:81437896-81437915 | None:intergenic | 45.0% | |
| ! | AAACTCTGAGGGAGTGTAGA+TGG | - | chr3_2:81437897-81437916 | Msa0429860:intron | 45.0% |
| ! | AACTCTGAGGGAGTGTAGAT+GGG | - | chr3_2:81437898-81437917 | Msa0429860:intron | 45.0% |
| GCTGACCGGTTGAATTATCA+CGG | + | chr3_2:81438029-81438048 | None:intergenic | 45.0% | |
| AACTATAGTTCGGAGCTGAC+CGG | + | chr3_2:81438043-81438062 | None:intergenic | 45.0% | |
| !!! | TTTTAATAATTTTTTTACAA+AGG | - | chr3_2:81433041-81433060 | Msa0429860:three_prime_UTR | 5.0% |
| !!! | TTTAATAATTTTTTTACAAA+GGG | - | chr3_2:81433042-81433061 | Msa0429860:three_prime_UTR | 5.0% |
| !!! | GTTTTAATTATATTATTTTA+GGG | + | chr3_2:81433093-81433112 | None:intergenic | 5.0% |
| !!! | TGTTTTAATTATATTATTTT+AGG | + | chr3_2:81433094-81433113 | None:intergenic | 5.0% |
| !! | TCTCTGGTGACGACGACTTT+TGG | + | chr3_2:81432742-81432761 | None:intergenic | 50.0% |
| GGAATTCTTGCCACGTTCTC+TGG | + | chr3_2:81432758-81432777 | None:intergenic | 50.0% | |
| CCTCGTAGATGCTCAATGAG+CGG | + | chr3_2:81433294-81433313 | None:intergenic | 50.0% | |
| ! | CTGGGTTGGGTTCCTTTATG+TGG | - | chr3_2:81433377-81433396 | Msa0429860:intron | 50.0% |
| AGAAAGACTGAACCAGCCTC+GGG | + | chr3_2:81433647-81433666 | None:intergenic | 50.0% | |
| ! | GGCTGGTTCAGTCTTTCTAG+AGG | - | chr3_2:81433649-81433668 | Msa0429860:intron | 50.0% |
| ! | GTTCAGTCTTTCTAGAGGCG+TGG | - | chr3_2:81433654-81433673 | Msa0429860:intron | 50.0% |
| ! | TTTCTAGAGGCGTGGAGGTA+AGG | - | chr3_2:81433662-81433681 | Msa0429860:intron | 50.0% |
| AGGCGTGGAGGTAAGGATTT+AGG | - | chr3_2:81433669-81433688 | Msa0429860:intron | 50.0% | |
| ACAACGCCTATTCTGACACG+AGG | + | chr3_2:81434401-81434420 | None:intergenic | 50.0% | |
| ! | CGTGTCAGAATAGGCGTTGT+TGG | - | chr3_2:81434401-81434420 | Msa0429860:intron | 50.0% |
| ! | TCATGGTGAAGAAGCGCAAC+TGG | + | chr3_2:81434566-81434585 | None:intergenic | 50.0% |
| GTTGCGCTTCTTCACCATGA+TGG | - | chr3_2:81434566-81434585 | Msa0429860:intron | 50.0% | |
| GCATCTAGGTAGGTGAGAGA+AGG | - | chr3_2:81434691-81434710 | Msa0429860:intron | 50.0% | |
| !! | TTGCTAGCCTTTGCAGAAGC+AGG | + | chr3_2:81435020-81435039 | None:intergenic | 50.0% |
| GAAGTATATGCATGCCCGGT+AGG | + | chr3_2:81435646-81435665 | None:intergenic | 50.0% | |
| ATTCTTCCAGGCTCTGTTGC+AGG | + | chr3_2:81436269-81436288 | None:intergenic | 50.0% | |
| ATCTCCTTTCGGATTCCGAC+TGG | - | chr3_2:81436287-81436306 | Msa0429860:intron | 50.0% | |
| GCTGCCATGGCAAGAAGATT+AGG | - | chr3_2:81436343-81436362 | Msa0429860:intron | 50.0% | |
| TGTATACCACCCAACACGAC+CGG | - | chr3_2:81436375-81436394 | Msa0429860:CDS | 50.0% | |
| TGTGATTACCCTTCAAGGCC+CGG | + | chr3_2:81436397-81436416 | None:intergenic | 50.0% | |
| !! | TGCTAAAGAGTGTTCCCGTC+TGG | - | chr3_2:81436497-81436516 | Msa0429860:intron | 50.0% |
| AACTTCTCCATGTGGCCAGA+CGG | + | chr3_2:81436515-81436534 | None:intergenic | 50.0% | |
| CCCGCAGAAACAGACAACAA+TGG | + | chr3_2:81437070-81437089 | None:intergenic | 50.0% | |
| GCTTCGCCTGCACTTGACAT+TGG | + | chr3_2:81433248-81433267 | None:intergenic | 55.0% | |
| CCGCTCATTGAGCATCTACG+AGG | - | chr3_2:81433291-81433310 | Msa0429860:intron | 55.0% | |
| GGTTGTCATCACTTCTCCCG+AGG | - | chr3_2:81433628-81433647 | Msa0429860:intron | 55.0% | |
| ! | CAGTCTTTCTAGAGGCGTGG+AGG | - | chr3_2:81433657-81433676 | Msa0429860:intron | 55.0% |
| ! | ACTTTGGAGGGGTGCATGCT+TGG | + | chr3_2:81433967-81433986 | None:intergenic | 55.0% |
| GGGATGCCTCGTGTCAGAAT+AGG | - | chr3_2:81434392-81434411 | Msa0429860:intron | 55.0% | |
| CGACTTGAAAGCCCTTCCTC+TGG | + | chr3_2:81435147-81435166 | None:intergenic | 55.0% | |
| ! | GAGGAAGGGCTTTCAAGTCG+TGG | - | chr3_2:81435147-81435166 | Msa0429860:intron | 55.0% |
| TGCTCCAGTCGGAATCCGAA+AGG | + | chr3_2:81436294-81436313 | None:intergenic | 55.0% | |
| GTATACCACCCAACACGACC+GGG | - | chr3_2:81436376-81436395 | Msa0429860:CDS | 55.0% | |
| ACTTCTCCATGTGGCCAGAC+GGG | + | chr3_2:81436514-81436533 | None:intergenic | 55.0% | |
| ATTGCAGGCTCACCCCACAT+AGG | - | chr3_2:81436591-81436610 | Msa0429860:intron | 55.0% | |
| GTCGTCGTCACCAGAGAACG+TGG | - | chr3_2:81432745-81432764 | Msa0429860:three_prime_UTR | 60.0% | |
| GTCATCACTTCTCCCGAGGC+TGG | - | chr3_2:81433632-81433651 | Msa0429860:intron | 60.0% | |
| ! | GAGGCATCCCAGCAGCTCTA+AGG | + | chr3_2:81434382-81434401 | None:intergenic | 60.0% |
| TGGGGAGACAACTGCTGCCA+TGG | - | chr3_2:81436330-81436349 | Msa0429860:intron | 60.0% | |
| CTTCAAGGCCCGGTCGTGTT+GGG | + | chr3_2:81436387-81436406 | None:intergenic | 60.0% | |
| CAACACGACCGGGCCTTGAA+GGG | - | chr3_2:81436386-81436405 | Msa0429860:CDS | 60.0% | |
| AGTGTTCCCGTCTGGCCACA+TGG | - | chr3_2:81436505-81436524 | Msa0429860:intron | 60.0% | |
| CCTTCAAGGCCCGGTCGTGT+TGG | + | chr3_2:81436388-81436407 | None:intergenic | 65.0% | |
| CCAACACGACCGGGCCTTGA+AGG | - | chr3_2:81436385-81436404 | Msa0429860:CDS | 65.0% | |
| CAAGGCCCGGTCGTGTTGGG+TGG | + | chr3_2:81436384-81436403 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 81432731 | 81438126 | 81432731 | ID=Msa0429860;Name=Msa0429860 |
| chr3_2 | mRNA | 81432731 | 81438126 | 81432731 | ID=Msa0429860-mRNA-1;Parent=Msa0429860;Name=Msa0429860-mRNA-1;_AED=0.18;_eAED=0.21;_QI=0|0.87|0.88|1|1|1|9|438|242 |
| chr3_2 | exon | 81432731 | 81433223 | 81432731 | ID=Msa0429860-mRNA-1:exon:22499;Parent=Msa0429860-mRNA-1 |
| chr3_2 | exon | 81434450 | 81434581 | 81434450 | ID=Msa0429860-mRNA-1:exon:22498;Parent=Msa0429860-mRNA-1 |
| chr3_2 | exon | 81434910 | 81434995 | 81434910 | ID=Msa0429860-mRNA-1:exon:22497;Parent=Msa0429860-mRNA-1 |
| chr3_2 | exon | 81435654 | 81435709 | 81435654 | ID=Msa0429860-mRNA-1:exon:22496;Parent=Msa0429860-mRNA-1 |
| chr3_2 | exon | 81435810 | 81435902 | 81435810 | ID=Msa0429860-mRNA-1:exon:22495;Parent=Msa0429860-mRNA-1 |
| chr3_2 | exon | 81436354 | 81436472 | 81436354 | ID=Msa0429860-mRNA-1:exon:22494;Parent=Msa0429860-mRNA-1 |
| chr3_2 | exon | 81437179 | 81437245 | 81437179 | ID=Msa0429860-mRNA-1:exon:22493;Parent=Msa0429860-mRNA-1 |
| chr3_2 | exon | 81437509 | 81437596 | 81437509 | ID=Msa0429860-mRNA-1:exon:22492;Parent=Msa0429860-mRNA-1 |
| chr3_2 | exon | 81438094 | 81438126 | 81438094 | ID=Msa0429860-mRNA-1:exon:22491;Parent=Msa0429860-mRNA-1 |
| chr3_2 | CDS | 81438094 | 81438126 | 81438094 | ID=Msa0429860-mRNA-1:cds;Parent=Msa0429860-mRNA-1 |
| chr3_2 | CDS | 81437509 | 81437596 | 81437509 | ID=Msa0429860-mRNA-1:cds;Parent=Msa0429860-mRNA-1 |
| chr3_2 | CDS | 81437179 | 81437245 | 81437179 | ID=Msa0429860-mRNA-1:cds;Parent=Msa0429860-mRNA-1 |
| chr3_2 | CDS | 81436354 | 81436472 | 81436354 | ID=Msa0429860-mRNA-1:cds;Parent=Msa0429860-mRNA-1 |
| chr3_2 | CDS | 81435810 | 81435902 | 81435810 | ID=Msa0429860-mRNA-1:cds;Parent=Msa0429860-mRNA-1 |
| chr3_2 | CDS | 81435654 | 81435709 | 81435654 | ID=Msa0429860-mRNA-1:cds;Parent=Msa0429860-mRNA-1 |
| chr3_2 | CDS | 81434910 | 81434995 | 81434910 | ID=Msa0429860-mRNA-1:cds;Parent=Msa0429860-mRNA-1 |
| chr3_2 | CDS | 81434450 | 81434581 | 81434450 | ID=Msa0429860-mRNA-1:cds;Parent=Msa0429860-mRNA-1 |
| chr3_2 | CDS | 81433169 | 81433223 | 81433169 | ID=Msa0429860-mRNA-1:cds;Parent=Msa0429860-mRNA-1 |
| chr3_2 | three_prime_UTR | 81432731 | 81433168 | 81432731 | ID=Msa0429860-mRNA-1:three_prime_utr;Parent=Msa0429860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
