Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500840 | XP_004501590.1 | 86.230 | 305 | 37 | 3 | 1 | 302 | 1 | 303 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500840 | sp|O48721|HEM4_ARATH | 66.265 | 249 | 82 | 2 | 53 | 299 | 65 | 313 | 6.72e-120 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500840 | A0A1S2YBB1 | 86.230 | 305 | 37 | 3 | 1 | 302 | 1 | 303 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0429860 | Msa0500840 | 0.918125 | 2.291166e-86 | -8.615850e-47 |
| Msa0500840 | Msa0500870 | 0.993052 | 3.897821e-197 | -8.615850e-47 |
| Msa0500840 | Msa0745250 | 0.838221 | 3.270022e-57 | -8.615850e-47 |
| Msa0500840 | Msa0826800 | 0.803995 | 2.671527e-49 | -8.615850e-47 |
| Msa0500840 | Msa0865520 | 0.838245 | 3.223936e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500840 | MtrunA17_Chr3g0133641 | 88.997 | 309 | 26 | 2 | 1 | 302 | 1 | 308 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500840 | AT2G26540.1 | 66.265 | 249 | 82 | 2 | 53 | 299 | 65 | 313 | 6.83e-121 | 350 |
| Msa0500840 | AT2G26540.2 | 66.383 | 235 | 77 | 2 | 53 | 285 | 65 | 299 | 9.55e-114 | 330 |
| Msa0500840 | AT2G26540.3 | 66.316 | 190 | 63 | 1 | 53 | 241 | 65 | 254 | 5.28e-89 | 266 |
Find 112 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTATTTGATTAGTTTAT+TGG | 0.152477 | 3_4:+41404103 | Msa0500840:three_prime_UTR |
| CTACACTCCCTCAGAGTTTA+AGG | 0.153526 | 3_4:-41404256 | None:intergenic |
| AGAGCAGTGGGAGAAGAAAA+TGG | 0.284379 | 3_4:-41399026 | None:intergenic |
| GCAATTCAGTTGCATGTATT+GGG | 0.291215 | 3_4:+41402674 | Msa0500840:CDS |
| TTGCAGATAATGCATTTGAT+TGG | 0.331352 | 3_4:+41399970 | Msa0500840:intron |
| GGAATTCTTGCCACGTTCTC+TGG | 0.335170 | 3_4:-41399123 | None:intergenic |
| TCTCTGGTGACGACGACTTT+TGG | 0.336746 | 3_4:-41399107 | None:intergenic |
| AAACTCTGAGGGAGTGTAGA+TGG | 0.337770 | 3_4:+41404260 | Msa0500840:three_prime_UTR |
| ATTGTTGTCCTTAGAGCTGC+TGG | 0.341737 | 3_4:+41400735 | Msa0500840:intron |
| ATCCGAAAGGAGATTCTTCC+AGG | 0.344583 | 3_4:-41402641 | None:intergenic |
| CCTTCAAGGCCCGGTCGTGT+TGG | 0.368846 | 3_4:-41402748 | None:intergenic |
| AGCAATTCAGTTGCATGTAT+TGG | 0.375651 | 3_4:+41402673 | Msa0500840:CDS |
| CCAACACGACCGGGCCTTGA+AGG | 0.382919 | 3_4:+41402748 | Msa0500840:CDS |
| CCCAACACGTTTCAATTCAA+TGG | 0.383818 | 3_4:+41398932 | Msa0500840:exon |
| CTTCAAGGCCCGGTCGTGTT+GGG | 0.385029 | 3_4:-41402747 | None:intergenic |
| CTAGGAAGCTTGTCGAAATC+AGG | 0.387691 | 3_4:-41399678 | None:intergenic |
| TTCCAAGCTTATCACTGCTT+TGG | 0.388502 | 3_4:+41399142 | Msa0500840:CDS |
| GAAGCATGAAATCAATTGTT+TGG | 0.402913 | 3_4:+41399626 | Msa0500840:CDS |
| GTCATCACTTCTCCCGAGGC+TGG | 0.415094 | 3_4:+41399996 | Msa0500840:CDS |
| TGATAACAGCTGGCTGGATT+CGG | 0.424755 | 3_4:+41398893 | Msa0500840:five_prime_UTR |
| TGCAGAAGCAGGATACAAAA+TGG | 0.429168 | 3_4:-41401367 | None:intergenic |
| TACAAAAGACATACAACAAT+CGG | 0.433483 | 3_4:+41404449 | Msa0500840:three_prime_UTR |
| TTGCTAGCCTTTGCAGAAGC+AGG | 0.435597 | 3_4:-41401378 | None:intergenic |
| GGTGAAGCTACTGTAACAAC+AGG | 0.436046 | 3_4:-41402276 | None:intergenic |
| AGCCTGGAAGAATCTCCTTT+CGG | 0.436206 | 3_4:+41402639 | Msa0500840:CDS |
| GAGAAGGTGAAGAACAGAAA+GGG | 0.437683 | 3_4:-41398974 | None:intergenic |
| CTACCTCAATAAGTCATCAT+AGG | 0.441135 | 3_4:-41404029 | None:intergenic |
| ATCTGATCAACATGTTGAAC+TGG | 0.442184 | 3_4:-41402228 | None:intergenic |
| TGCAGATAATGCATTTGATT+GGG | 0.443776 | 3_4:+41399971 | Msa0500840:intron |
| AGTTGAAGCGAAGGTGAAAG+TGG | 0.443973 | 3_4:-41399069 | None:intergenic |
| GCTGCCATGGCAAGAAGATT+AGG | 0.444208 | 3_4:+41402706 | Msa0500840:CDS |
| CGTGTCAGAATAGGCGTTGT+TGG | 0.445317 | 3_4:+41400765 | Msa0500840:CDS |
| AAAAGGCAACATCAAGTGAT+TGG | 0.445912 | 3_4:-41400833 | None:intergenic |
| CTTAAGATTAAACTATAGTT+CGG | 0.455622 | 3_4:-41404408 | None:intergenic |
| CATAGGATCTCAATGCTTCA+AGG | 0.457340 | 3_4:-41404012 | None:intergenic |
| CTCTGCACATCATAGCAATC+TGG | 0.459530 | 3_4:+41404054 | Msa0500840:three_prime_UTR |
| AACTAAGTGCTCGACTCAAT+TGG | 0.460553 | 3_4:-41404230 | None:intergenic |
| AGAATAGGCGTTGTTGGATC+AGG | 0.460750 | 3_4:+41400771 | Msa0500840:CDS |
| CTCCTTGTCTTCAACTTCAC+CGG | 0.464100 | 3_4:+41398997 | Msa0500840:CDS |
| GGATTTGTGATTACCCTTCA+AGG | 0.467965 | 3_4:-41402762 | None:intergenic |
| AGAAGGTGAAGAACAGAAAG+GGG | 0.471647 | 3_4:-41398973 | None:intergenic |
| TAGCTTCACCATCTTCAATT+CGG | 0.479995 | 3_4:+41402289 | Msa0500840:CDS |
| ATCTCCTTTCGGATTCCGAC+TGG | 0.480360 | 3_4:+41402650 | Msa0500840:CDS |
| AGTTGAAGACAAGGAGGAGA+AGG | 0.483406 | 3_4:-41398990 | None:intergenic |
| TAGAAAGACTGAACCAGCCT+CGG | 0.488989 | 3_4:-41400009 | None:intergenic |
| TGTATACCACCCAACACGAC+CGG | 0.493750 | 3_4:+41402738 | Msa0500840:CDS |
| ACTCTACATAAATAAACAGC+TGG | 0.500698 | 3_4:-41404085 | None:intergenic |
| ATTGGTAGGTATTCACATGC+TGG | 0.502830 | 3_4:-41404212 | None:intergenic |
| AGTTTATTGGATTGACATTG+TGG | 0.508585 | 3_4:+41404116 | Msa0500840:three_prime_UTR |
| GGAGAAGGTGAAGAACAGAA+AGG | 0.510753 | 3_4:-41398975 | None:intergenic |
| AGCGAAGGTGAAAGTGGAGT+TGG | 0.511323 | 3_4:-41399063 | None:intergenic |
| TGTGATTACCCTTCAAGGCC+CGG | 0.515459 | 3_4:-41402757 | None:intergenic |
| TAAGACCGTGATAATTCAAC+CGG | 0.516216 | 3_4:+41404379 | Msa0500840:three_prime_UTR |
| GGTGAAAGTGGAGTTGGAAT+CGG | 0.517382 | 3_4:-41399057 | None:intergenic |
| ATTAAGATTAAACTCAACTA+AGG | 0.517507 | 3_4:-41404351 | None:intergenic |
| GAGGAAGGGCTTTCAAGTCG+TGG | 0.524123 | 3_4:+41401510 | Msa0500840:intron |
| GCAAAGGCTAGCAATGAGAT+TGG | 0.524315 | 3_4:+41401387 | Msa0500840:CDS |
| GGGATGCCTCGTGTCAGAAT+AGG | 0.529726 | 3_4:+41400756 | Msa0500840:CDS |
| GTCGTGGATTTGAAGTTACA+AGG | 0.531380 | 3_4:+41401526 | Msa0500840:CDS |
| AACTCTGAGGGAGTGTAGAT+GGG | 0.532287 | 3_4:+41404261 | Msa0500840:three_prime_UTR |
| TTTGTATCCTGCTTCTGCAA+AGG | 0.534447 | 3_4:+41401371 | Msa0500840:CDS |
| GCCATTGAATTGAAACGTGT+TGG | 0.534538 | 3_4:-41398933 | None:intergenic |
| TACCAAAGCAGTGATAAGCT+TGG | 0.535051 | 3_4:-41399144 | None:intergenic |
| AACTATAGTTCGGAGCTGAC+CGG | 0.535054 | 3_4:-41404398 | None:intergenic |
| TGGGGAGACAACTGCTGCCA+TGG | 0.540541 | 3_4:+41402693 | Msa0500840:CDS |
| CCATTGAATTGAAACGTGTT+GGG | 0.543901 | 3_4:-41398932 | None:intergenic |
| GCTGGCTGGATTCGGACAGC+AGG | 0.547654 | 3_4:+41398901 | Msa0500840:five_prime_UTR |
| GATCCTATGATGACTTATTG+AGG | 0.547694 | 3_4:+41404026 | Msa0500840:CDS |
| AGAAAGACTGAACCAGCCTC+GGG | 0.549715 | 3_4:-41400008 | None:intergenic |
| AGTTTGTCCTTAAACTCTGA+GGG | 0.549996 | 3_4:+41404249 | Msa0500840:three_prime_UTR |
| TTGTTGTCCTTAGAGCTGCT+GGG | 0.551291 | 3_4:+41400736 | Msa0500840:intron |
| GTTCAGTCTTTCTAGAGGCG+TGG | 0.551620 | 3_4:+41400018 | Msa0500840:CDS |
| AGTTCAACATGTTGATCAGA+TGG | 0.554586 | 3_4:+41402230 | Msa0500840:CDS |
| AGTGGAGTTGGAATCGGTGG+CGG | 0.555370 | 3_4:-41399051 | None:intergenic |
| CAACACGACCGGGCCTTGAA+GGG | 0.558934 | 3_4:+41402749 | Msa0500840:CDS |
| GAAGCCTAATCTTCTTGCCA+TGG | 0.560219 | 3_4:-41402710 | None:intergenic |
| CAAGGCCCGGTCGTGTTGGG+TGG | 0.563613 | 3_4:-41402744 | None:intergenic |
| ATGTGATGATAACAGCTGGC+TGG | 0.563667 | 3_4:+41398887 | Msa0500840:five_prime_UTR |
| GGAACTCACCGAATTGAAGA+TGG | 0.567974 | 3_4:-41402297 | None:intergenic |
| TTGGTAGGTATTCACATGCT+GGG | 0.570026 | 3_4:-41404211 | None:intergenic |
| CAATTCAGTTGCATGTATTG+GGG | 0.573533 | 3_4:+41402675 | Msa0500840:CDS |
| AGCTTACCGCTTAATAAACT+AGG | 0.573783 | 3_4:-41399696 | None:intergenic |
| ATCGGTGGCGGAGAGAGCAG+TGG | 0.578656 | 3_4:-41399039 | None:intergenic |
| TATTGGATTGACATTGTGGA+TGG | 0.579278 | 3_4:+41404120 | Msa0500840:three_prime_UTR |
| TCGGTGGCGGAGAGAGCAGT+GGG | 0.581834 | 3_4:-41399038 | None:intergenic |
| AAGCTTCCTAGTTTATTAAG+CGG | 0.582321 | 3_4:+41399690 | Msa0500840:CDS |
| GTCGTCGTCACCAGAGAACG+TGG | 0.586312 | 3_4:+41399113 | Msa0500840:CDS |
| GGTTGTCATCACTTCTCCCG+AGG | 0.603408 | 3_4:+41399992 | Msa0500840:CDS |
| GGCTGGTTCAGTCTTTCTAG+AGG | 0.604479 | 3_4:+41400013 | Msa0500840:CDS |
| TAGTTTGTCCTTAAACTCTG+AGG | 0.605443 | 3_4:+41404248 | Msa0500840:three_prime_UTR |
| TGCTCCAGTCGGAATCCGAA+AGG | 0.605771 | 3_4:-41402654 | None:intergenic |
| TTGAATTGAAACGTGTTGGG+TGG | 0.608144 | 3_4:-41398929 | None:intergenic |
| GTATACCACCCAACACGACC+GGG | 0.609651 | 3_4:+41402739 | Msa0500840:CDS |
| ATTGGAAGAAGTTGAAGCGA+AGG | 0.609862 | 3_4:-41399078 | None:intergenic |
| TTGTATTCTTGAGACTCATG+AGG | 0.626049 | 3_4:+41404162 | Msa0500840:three_prime_UTR |
| TATTTACATAACCAGAGGAA+GGG | 0.627420 | 3_4:+41401496 | Msa0500840:intron |
| TGCCGGTGAAGTTGAAGACA+AGG | 0.629472 | 3_4:-41398999 | None:intergenic |
| TGCAACTGAATTGCTCCAGT+CGG | 0.630863 | 3_4:-41402665 | None:intergenic |
| CAGTCTTTCTAGAGGCGTGG+AGG | 0.633928 | 3_4:+41400021 | Msa0500840:CDS |
| GAAAGTGGAGTTGGAATCGG+TGG | 0.636840 | 3_4:-41399054 | None:intergenic |
| AAGTGCTCGACTCAATTGGT+AGG | 0.637461 | 3_4:-41404226 | None:intergenic |
| GTTGATGTGATGATAACAGC+TGG | 0.639519 | 3_4:+41398883 | Msa0500840:five_prime_UTR |
| GAGAAGAAAATGGATGCTGC+CGG | 0.650956 | 3_4:-41399016 | None:intergenic |
| GCTGACCGGTTGAATTATCA+CGG | 0.654332 | 3_4:-41404384 | None:intergenic |
| CCTCGTAGATGCTCAATGAG+CGG | 0.678328 | 3_4:-41399654 | None:intergenic |
| GTGAAGCTACTGTAACAACA+GGG | 0.684647 | 3_4:-41402275 | None:intergenic |
| AAGGATGAATACATATACAA+CGG | 0.685902 | 3_4:+41401545 | Msa0500840:CDS |
| CGGTGAAGTTGAAGACAAGG+AGG | 0.693418 | 3_4:-41398996 | None:intergenic |
| CCGCTCATTGAGCATCTACG+AGG | 0.704354 | 3_4:+41399654 | Msa0500840:CDS |
| CAACAATCGGAAGTGATGAG+CGG | 0.710653 | 3_4:+41404462 | Msa0500840:three_prime_UTR |
| ACAACGCCTATTCTGACACG+AGG | 0.726929 | 3_4:-41400762 | None:intergenic |
| TGAAGCTACTGTAACAACAG+GGG | 0.755969 | 3_4:-41402274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTTAAAAAAAAA+AGG | + | chr3_4:41398849-41398868 | Msa0500840:five_prime_UTR | 0.0% |
| !!! | TTTTAATAATTTTTTTACAG+AGG | + | chr3_4:41399404-41399423 | Msa0500840:intron | 10.0% |
| !!! | TTTAATAATTTTTTTACAGA+GGG | + | chr3_4:41399405-41399424 | Msa0500840:intron | 10.0% |
| !! | AATAGCATAAAAAATTATTA+GGG | - | chr3_4:41400460-41400479 | None:intergenic | 10.0% |
| !! | AAATAGCATAAAAAATTATT+AGG | - | chr3_4:41400461-41400480 | None:intergenic | 10.0% |
| !!! | TTTTTTATGCTATTTTAATT+AGG | + | chr3_4:41400466-41400485 | Msa0500840:intron | 10.0% |
| !! | TTCAATAAATAATTATCATT+TGG | + | chr3_4:41401942-41401961 | Msa0500840:intron | 10.0% |
| !!! | TATATTTTTTTAAAATGATG+TGG | + | chr3_4:41403284-41403303 | Msa0500840:intron | 10.0% |
| !! | TTTATTTAAAAAAAAAAGGC+AGG | + | chr3_4:41398853-41398872 | Msa0500840:five_prime_UTR | 15.0% |
| !!! | TTATATTATTTTAGGGAAAA+AGG | - | chr3_4:41399449-41399468 | None:intergenic | 15.0% |
| !! | ATTTCAATAAAATGAGAAAT+AGG | + | chr3_4:41399514-41399533 | Msa0500840:intron | 15.0% |
| !! | AATCATTTGAAGATAATTAA+AGG | - | chr3_4:41400150-41400169 | None:intergenic | 15.0% |
| !!! | TAATTATCTTCAAATGATTT+TGG | + | chr3_4:41400151-41400170 | Msa0500840:intron | 15.0% |
| !! | AAAATTTCAAAATCATTTGA+AGG | - | chr3_4:41400266-41400285 | None:intergenic | 15.0% |
| !! | AAAAATTATTAGGGAAAAAA+CGG | - | chr3_4:41400451-41400470 | None:intergenic | 15.0% |
| !! | ACAAAATAATAGTAAGATTT+GGG | - | chr3_4:41400992-41401011 | None:intergenic | 15.0% |
| !! | CAAAAATAGTAAATTTATCT+TGG | + | chr3_4:41401867-41401886 | Msa0500840:intron | 15.0% |
| !! | AAAAAATTTGATTGCAAAAA+TGG | + | chr3_4:41402069-41402088 | Msa0500840:intron | 15.0% |
| !!! | TATATGTGTTTTTTAAATGA+AGG | - | chr3_4:41403005-41403024 | None:intergenic | 15.0% |
| !!! | TATTGATTAACAATAAACAT+GGG | - | chr3_4:41403140-41403159 | None:intergenic | 15.0% |
| !! | GAAAAAAGAAAGAAAAAAAA+AGG | - | chr3_4:41403812-41403831 | None:intergenic | 15.0% |
| !! | TATTGACAAATTGTAACATT+AGG | + | chr3_4:41399547-41399566 | Msa0500840:intron | 20.0% |
| !!! | TTAAGTTGAAAAAATCATCA+TGG | - | chr3_4:41399814-41399833 | None:intergenic | 20.0% |
| !!! | TTCAATGTTTTTAATTGTTG+TGG | + | chr3_4:41400599-41400618 | Msa0500840:intron | 20.0% |
| !! | AAGTTACAAAAGAAAAAAAG+AGG | - | chr3_4:41400664-41400683 | None:intergenic | 20.0% |
| !! | AATTAAGACTGTTAATCATT+TGG | - | chr3_4:41400718-41400737 | None:intergenic | 20.0% |
| !! | AAGTGTAAACTAAGTTTAAA+TGG | + | chr3_4:41400887-41400906 | Msa0500840:intron | 20.0% |
| !! | CACAAAATAATAGTAAGATT+TGG | - | chr3_4:41400993-41401012 | None:intergenic | 20.0% |
| !!! | CAAATCTTACTATTATTTTG+TGG | + | chr3_4:41400991-41401010 | Msa0500840:intron | 20.0% |
| !!! | TATTATTTTGTGGATATTCA+AGG | + | chr3_4:41401001-41401020 | Msa0500840:intron | 20.0% |
| !! | ATAACTACATAAATTTACTC+TGG | + | chr3_4:41401125-41401144 | Msa0500840:intron | 20.0% |
| !!! | ATTTAATATTTTTCAGCAAC+AGG | + | chr3_4:41401300-41401319 | Msa0500840:intron | 20.0% |
| !!! | GTAGTTTTATTTGCAATTTT+GGG | - | chr3_4:41401348-41401367 | None:intergenic | 20.0% |
| !!! | TATATTTTCTTGAAAAGAAG+GGG | - | chr3_4:41401593-41401612 | None:intergenic | 20.0% |
| !!! | CTATATTTTCTTGAAAAGAA+GGG | - | chr3_4:41401594-41401613 | None:intergenic | 20.0% |
| !!! | ACTATATTTTCTTGAAAAGA+AGG | - | chr3_4:41401595-41401614 | None:intergenic | 20.0% |
| !! | GAAACTATTAAAAAACTTGA+AGG | - | chr3_4:41402337-41402356 | None:intergenic | 20.0% |
| !! | TACTATATGTAGATTTGAAA+TGG | - | chr3_4:41402364-41402383 | None:intergenic | 20.0% |
| !!! | ATAACAAGCTCTTTTATTTT+TGG | + | chr3_4:41402930-41402949 | Msa0500840:intron | 20.0% |
| !!! | GTATTGATTAACAATAAACA+TGG | - | chr3_4:41403141-41403160 | None:intergenic | 20.0% |
| !!! | TTTAAAATGATGTGGTTAAA+TGG | + | chr3_4:41403292-41403311 | Msa0500840:intron | 20.0% |
| !! | ATAAGATATCTACATAAACT+TGG | - | chr3_4:41403911-41403930 | None:intergenic | 20.0% |
| !!! | AGAGTATTTGATTAGTTTAT+TGG | + | chr3_4:41404103-41404122 | Msa0500840:three_prime_UTR | 20.0% |
| !!! | TAAGATTTTCATGTTTTGTA+TGG | + | chr3_4:41404306-41404325 | Msa0500840:three_prime_UTR | 20.0% |
| !! | ATTAAGATTAAACTCAACTA+AGG | - | chr3_4:41404354-41404373 | None:intergenic | 20.0% |
| !! | CTTAAGATTAAACTATAGTT+CGG | - | chr3_4:41404411-41404430 | None:intergenic | 20.0% |
| ! | ATTTAAAAAAAAAAGGCAGG+AGG | + | chr3_4:41398856-41398875 | Msa0500840:five_prime_UTR | 25.0% |
| ! | TTTAAAAAAAAAAGGCAGGA+GGG | + | chr3_4:41398857-41398876 | Msa0500840:five_prime_UTR | 25.0% |
| ! | TTAGATATCAATCCACATAA+AGG | - | chr3_4:41399755-41399774 | None:intergenic | 25.0% |
| ! | TTAATGAGTGAAAAGTGATA+GGG | - | chr3_4:41399927-41399946 | None:intergenic | 25.0% |
| ! | ATTAATGAGTGAAAAGTGAT+AGG | - | chr3_4:41399928-41399947 | None:intergenic | 25.0% |
| !! | AATTTTGAATCTACTGTTGA+TGG | + | chr3_4:41400175-41400194 | Msa0500840:intron | 25.0% |
| ! | AAATCATTTGAAGGTAACTA+AGG | - | chr3_4:41400257-41400276 | None:intergenic | 25.0% |
| ! | GTTAATATTGAAGGGAAAAA+TGG | - | chr3_4:41400296-41400315 | None:intergenic | 25.0% |
| !! | TTTTCCCTTCAATATTAACT+TGG | + | chr3_4:41400297-41400316 | Msa0500840:intron | 25.0% |
| ! | ATGACTTAGATTATACATCA+AGG | - | chr3_4:41400539-41400558 | None:intergenic | 25.0% |
| ! | TTACACTTAACTGATAAACA+TGG | - | chr3_4:41400875-41400894 | None:intergenic | 25.0% |
| ! | TTATCTTGGAACTATTGTTA+TGG | - | chr3_4:41401035-41401054 | None:intergenic | 25.0% |
| ! | ACTATTATTCTGATACTGAT+TGG | - | chr3_4:41401209-41401228 | None:intergenic | 25.0% |
| !!! | GAAGCTTGTTTTCAATAAAA+TGG | + | chr3_4:41401239-41401258 | Msa0500840:intron | 25.0% |
| ! | GTTGTGAAAGAAACTTATTA+AGG | + | chr3_4:41401277-41401296 | Msa0500840:intron | 25.0% |
| !!! | GGTAGTTTTATTTGCAATTT+TGG | - | chr3_4:41401349-41401368 | None:intergenic | 25.0% |
| ! | AAGGATGAATACATATACAA+CGG | + | chr3_4:41401545-41401564 | Msa0500840:CDS | 25.0% |
| ! | GTATTTGATATAAAATGCAC+AGG | - | chr3_4:41401895-41401914 | None:intergenic | 25.0% |
| ! | TGCTTATTTGATTGCTAAAA+TGG | + | chr3_4:41402094-41402113 | Msa0500840:intron | 25.0% |
| ! | TAAAAAACTTGAAGGCAAAA+GGG | - | chr3_4:41402329-41402348 | None:intergenic | 25.0% |
| ! | TTAAAAAACTTGAAGGCAAA+AGG | - | chr3_4:41402330-41402349 | None:intergenic | 25.0% |
| !! | TTTTATACTAACTGTGTAAG+CGG | + | chr3_4:41402401-41402420 | Msa0500840:intron | 25.0% |
| !! | AATACGTATGACATTTTCTT+AGG | + | chr3_4:41402565-41402584 | Msa0500840:intron | 25.0% |
| !!! | TAACAGGTTTTGAATACTTT+AGG | - | chr3_4:41402834-41402853 | None:intergenic | 25.0% |
| ! | CTCTTTAGCATATATTTAAC+AGG | - | chr3_4:41402850-41402869 | None:intergenic | 25.0% |
| !!! | CTTTTATTTTTGGAAATTGC+AGG | + | chr3_4:41402940-41402959 | Msa0500840:intron | 25.0% |
| ! | TCGAGTTAGTAAAAAGTTAT+GGG | - | chr3_4:41403034-41403053 | None:intergenic | 25.0% |
| !! | TTCGAGTTAGTAAAAAGTTA+TGG | - | chr3_4:41403035-41403054 | None:intergenic | 25.0% |
| ! | TTTCACTTCATTAAGCTATA+TGG | + | chr3_4:41403096-41403115 | Msa0500840:intron | 25.0% |
| ! | TTGTTAATCAATACACATGA+TGG | + | chr3_4:41403147-41403166 | Msa0500840:intron | 25.0% |
| ! | AGTAGCATATAAAAGATACA+TGG | - | chr3_4:41403640-41403659 | None:intergenic | 25.0% |
| !! | ATTAGAAGTATAGACAAGTT+TGG | + | chr3_4:41403750-41403769 | Msa0500840:intron | 25.0% |
| ! | TAATTGATTGCAAGTATTTC+AGG | + | chr3_4:41403876-41403895 | Msa0500840:intron | 25.0% |
| ! | AATTGATTGCAAGTATTTCA+GGG | + | chr3_4:41403877-41403896 | Msa0500840:intron | 25.0% |
| ! | AGAAAGAAGATTGTCAAAAA+CGG | - | chr3_4:41403969-41403988 | None:intergenic | 25.0% |
| ! | TACAAAAGACATACAACAAT+CGG | + | chr3_4:41404449-41404468 | Msa0500840:three_prime_UTR | 25.0% |
| TTAAAAAAAAAAGGCAGGAG+GGG | + | chr3_4:41398858-41398877 | Msa0500840:five_prime_UTR | 30.0% | |
| GTAATGTAATGTAATGCGTT+AGG | - | chr3_4:41399211-41399230 | None:intergenic | 30.0% | |
| GAAGCATGAAATCAATTGTT+TGG | + | chr3_4:41399626-41399645 | Msa0500840:CDS | 30.0% | |
| AAGCTTCCTAGTTTATTAAG+CGG | + | chr3_4:41399690-41399709 | Msa0500840:CDS | 30.0% | |
| ATATCTAAATCGACATAGTG+TGG | + | chr3_4:41399767-41399786 | Msa0500840:intron | 30.0% | |
| ATTCGTGTTATCATGTGTAT+CGG | - | chr3_4:41399873-41399892 | None:intergenic | 30.0% | |
| CACTCATTAATTTCTTCTCA+TGG | + | chr3_4:41399937-41399956 | Msa0500840:intron | 30.0% | |
| TTGCAGATAATGCATTTGAT+TGG | + | chr3_4:41399970-41399989 | Msa0500840:intron | 30.0% | |
| TGCAGATAATGCATTTGATT+GGG | + | chr3_4:41399971-41399990 | Msa0500840:intron | 30.0% | |
| CACTCCAAGTTAATATTGAA+GGG | - | chr3_4:41400304-41400323 | None:intergenic | 30.0% | |
| AATTTAGGTAAACCTCATCA+TGG | - | chr3_4:41400362-41400381 | None:intergenic | 30.0% | |
| CAACAGTCTCTACAAAATTT+AGG | - | chr3_4:41400377-41400396 | None:intergenic | 30.0% | |
| ! | TAAACATGGATACCTTTTGA+AGG | - | chr3_4:41400861-41400880 | None:intergenic | 30.0% |
| !! | ATCTTTAGCCTTTTGTTAGT+AGG | + | chr3_4:41401172-41401191 | Msa0500840:intron | 30.0% |
| TGTGATATTTACATAACCAG+AGG | + | chr3_4:41401491-41401510 | Msa0500840:intron | 30.0% | |
| ATATTTACATAACCAGAGGA+AGG | + | chr3_4:41401495-41401514 | Msa0500840:intron | 30.0% | |
| TATTTACATAACCAGAGGAA+GGG | + | chr3_4:41401496-41401515 | Msa0500840:intron | 30.0% | |
| ATTGCCTGTAATATGTTTCA+TGG | + | chr3_4:41401702-41401721 | Msa0500840:intron | 30.0% | |
| AATATGTTTCATGGTGTGTT+TGG | + | chr3_4:41401711-41401730 | Msa0500840:intron | 30.0% | |
| TGGAGGAAAATGTTACAAAA+AGG | + | chr3_4:41401804-41401823 | Msa0500840:intron | 30.0% | |
| GGAGGAAAATGTTACAAAAA+GGG | + | chr3_4:41401805-41401824 | Msa0500840:intron | 30.0% | |
| GAGGAAAATGTTACAAAAAG+GGG | + | chr3_4:41401806-41401825 | Msa0500840:intron | 30.0% | |
| AGGAAAATGTTACAAAAAGG+GGG | + | chr3_4:41401807-41401826 | Msa0500840:intron | 30.0% | |
| TATCATGTGCAAACTTGTAT+AGG | + | chr3_4:41401835-41401854 | Msa0500840:intron | 30.0% | |
| TAACCTATGCAATATTGCAT+AGG | + | chr3_4:41401973-41401992 | Msa0500840:intron | 30.0% | |
| AATCCTATGCAATATTGCAT+AGG | - | chr3_4:41401979-41401998 | None:intergenic | 30.0% | |
| TGCAGGTTAAAAAATCAGTT+GGG | - | chr3_4:41402615-41402634 | None:intergenic | 30.0% | |
| TTGCAGGTTAAAAAATCAGT+TGG | - | chr3_4:41402616-41402635 | None:intergenic | 30.0% | |
| !! | ACCTTTGAGAGAATACTTTT+GGG | + | chr3_4:41402785-41402804 | Msa0500840:intron | 30.0% |
| TTGTGTGAACTATTTCAAAG+AGG | - | chr3_4:41402905-41402924 | None:intergenic | 30.0% | |
| ! | CATTTTACTGTTCAACTGTT+AGG | + | chr3_4:41403215-41403234 | Msa0500840:intron | 30.0% |
| !! | AATGCTTTTTATTTCGTCGA+TGG | + | chr3_4:41403352-41403371 | Msa0500840:intron | 30.0% |
| TAGTATTACACAGCATTTAG+AGG | - | chr3_4:41403490-41403509 | None:intergenic | 30.0% | |
| TAAATGCTGTGTAATACTAG+TGG | + | chr3_4:41403491-41403510 | Msa0500840:intron | 30.0% | |
| TGTTGTTGAAGCTGAATTTA+TGG | + | chr3_4:41403661-41403680 | Msa0500840:intron | 30.0% | |
| ACTCTACATAAATAAACAGC+TGG | - | chr3_4:41404088-41404107 | None:intergenic | 30.0% | |
| AGTTTATTGGATTGACATTG+TGG | + | chr3_4:41404116-41404135 | Msa0500840:three_prime_UTR | 30.0% | |
| CCATTGAATTGAAACGTGTT+GGG | - | chr3_4:41398935-41398954 | None:intergenic | 35.0% | |
| AGCTTACCGCTTAATAAACT+AGG | - | chr3_4:41399699-41399718 | None:intergenic | 35.0% | |
| TTTATTAAGCGGTAAGCTCT+TGG | + | chr3_4:41399701-41399720 | Msa0500840:intron | 35.0% | |
| ! | TGGAATGATTTGTAAGAAGC+TGG | + | chr3_4:41399721-41399740 | Msa0500840:intron | 35.0% |
| ! | GGAATGATTTGTAAGAAGCT+GGG | + | chr3_4:41399722-41399741 | Msa0500840:intron | 35.0% |
| GCACTCCAAGTTAATATTGA+AGG | - | chr3_4:41400305-41400324 | None:intergenic | 35.0% | |
| ATGGATAGAATGACTTTGGA+GGG | - | chr3_4:41400343-41400362 | None:intergenic | 35.0% | |
| CATCATGGATAGAATGACTT+TGG | - | chr3_4:41400347-41400366 | None:intergenic | 35.0% | |
| AAGTCATTCTATCCATGATG+AGG | + | chr3_4:41400347-41400366 | Msa0500840:intron | 35.0% | |
| AAAAGGCAACATCAAGTGAT+TGG | - | chr3_4:41400836-41400855 | None:intergenic | 35.0% | |
| !! | GATACCTTTTGAAGGTGAAA+AGG | - | chr3_4:41400853-41400872 | None:intergenic | 35.0% |
| TAGTTCCAAGATAAGCATCT+AGG | + | chr3_4:41401041-41401060 | Msa0500840:intron | 35.0% | |
| AGTGATCACCTACTAACAAA+AGG | - | chr3_4:41401183-41401202 | None:intergenic | 35.0% | |
| CACACCATGAAACATATTAC+AGG | - | chr3_4:41401709-41401728 | None:intergenic | 35.0% | |
| GACAAAATACATGTCATAGC+AGG | - | chr3_4:41401762-41401781 | None:intergenic | 35.0% | |
| !! | GATTGCTAAAATGGTTTGCT+TGG | + | chr3_4:41402103-41402122 | Msa0500840:intron | 35.0% |
| !! | TAAAATGGTTTGCTTGGCTT+TGG | + | chr3_4:41402109-41402128 | Msa0500840:intron | 35.0% |
| AGTGTGAGAAATAGTTGGTT+AGG | - | chr3_4:41402136-41402155 | None:intergenic | 35.0% | |
| ! | AACCAACTATTTCTCACACT+CGG | + | chr3_4:41402136-41402155 | Msa0500840:intron | 35.0% |
| TGACGGCTAAGTTAGAATTA+GGG | - | chr3_4:41402204-41402223 | None:intergenic | 35.0% | |
| ATCTGATCAACATGTTGAAC+TGG | - | chr3_4:41402231-41402250 | None:intergenic | 35.0% | |
| AGTTCAACATGTTGATCAGA+TGG | + | chr3_4:41402230-41402249 | Msa0500840:CDS | 35.0% | |
| TAGCTTCACCATCTTCAATT+CGG | + | chr3_4:41402289-41402308 | Msa0500840:CDS | 35.0% | |
| TACATGTTGTACTTCCTTGA+TGG | + | chr3_4:41402428-41402447 | Msa0500840:intron | 35.0% | |
| TTAAGTTAACGACTCCATCA+AGG | - | chr3_4:41402445-41402464 | None:intergenic | 35.0% | |
| AGCAATTCAGTTGCATGTAT+TGG | + | chr3_4:41402673-41402692 | Msa0500840:CDS | 35.0% | |
| GCAATTCAGTTGCATGTATT+GGG | + | chr3_4:41402674-41402693 | Msa0500840:CDS | 35.0% | |
| CAATTCAGTTGCATGTATTG+GGG | + | chr3_4:41402675-41402694 | Msa0500840:CDS | 35.0% | |
| !! | CAAAAGTATTCTCTCAAAGG+TGG | - | chr3_4:41402786-41402805 | None:intergenic | 35.0% |
| !! | CACCTTTGAGAGAATACTTT+TGG | + | chr3_4:41402784-41402803 | Msa0500840:intron | 35.0% |
| !! | CCTTTGAGAGAATACTTTTG+GGG | + | chr3_4:41402786-41402805 | Msa0500840:intron | 35.0% |
| GAATCACAAGAAACATGACT+TGG | - | chr3_4:41403463-41403482 | None:intergenic | 35.0% | |
| GCAAGTATTTCAGGGTAAAT+TGG | + | chr3_4:41403885-41403904 | Msa0500840:intron | 35.0% | |
| TCAAAAACGGATGTACTAAC+AGG | - | chr3_4:41403956-41403975 | None:intergenic | 35.0% | |
| GATCCTATGATGACTTATTG+AGG | + | chr3_4:41404026-41404045 | Msa0500840:CDS | 35.0% | |
| CTACCTCAATAAGTCATCAT+AGG | - | chr3_4:41404032-41404051 | None:intergenic | 35.0% | |
| TATTGGATTGACATTGTGGA+TGG | + | chr3_4:41404120-41404139 | Msa0500840:three_prime_UTR | 35.0% | |
| TTGTATTCTTGAGACTCATG+AGG | + | chr3_4:41404162-41404181 | Msa0500840:three_prime_UTR | 35.0% | |
| !!! | TGCTGGGAATTTTTTACTAG+TGG | - | chr3_4:41404198-41404217 | None:intergenic | 35.0% |
| ! | TAGTTTGTCCTTAAACTCTG+AGG | + | chr3_4:41404248-41404267 | Msa0500840:three_prime_UTR | 35.0% |
| AGTTTGTCCTTAAACTCTGA+GGG | + | chr3_4:41404249-41404268 | Msa0500840:three_prime_UTR | 35.0% | |
| TAAGACCGTGATAATTCAAC+CGG | + | chr3_4:41404379-41404398 | Msa0500840:three_prime_UTR | 35.0% | |
| GTTGATGTGATGATAACAGC+TGG | + | chr3_4:41398883-41398902 | Msa0500840:five_prime_UTR | 40.0% | |
| TTGAATTGAAACGTGTTGGG+TGG | - | chr3_4:41398932-41398951 | None:intergenic | 40.0% | |
| CCCAACACGTTTCAATTCAA+TGG | + | chr3_4:41398932-41398951 | Msa0500840:exon | 40.0% | |
| GCCATTGAATTGAAACGTGT+TGG | - | chr3_4:41398936-41398955 | None:intergenic | 40.0% | |
| AGAAGGTGAAGAACAGAAAG+GGG | - | chr3_4:41398976-41398995 | None:intergenic | 40.0% | |
| GAGAAGGTGAAGAACAGAAA+GGG | - | chr3_4:41398977-41398996 | None:intergenic | 40.0% | |
| ATTGGAAGAAGTTGAAGCGA+AGG | - | chr3_4:41399081-41399100 | None:intergenic | 40.0% | |
| TTCCAAGCTTATCACTGCTT+TGG | + | chr3_4:41399142-41399161 | Msa0500840:CDS | 40.0% | |
| TACCAAAGCAGTGATAAGCT+TGG | - | chr3_4:41399147-41399166 | None:intergenic | 40.0% | |
| ATGCTGTGACATTATCAGCT+TGG | + | chr3_4:41399476-41399495 | Msa0500840:intron | 40.0% | |
| !! | ATCAGCTTGGTTTGCAATTC+AGG | + | chr3_4:41399489-41399508 | Msa0500840:intron | 40.0% |
| CATAGACGCTGAAACTACTT+TGG | + | chr3_4:41399580-41399599 | Msa0500840:intron | 40.0% | |
| GTAATTCCAATGTCAAGTGC+AGG | + | chr3_4:41399602-41399621 | Msa0500840:intron | 40.0% | |
| ! | TGATTTGTAAGAAGCTGGGT+TGG | + | chr3_4:41399726-41399745 | Msa0500840:intron | 40.0% |
| GATTTGTAAGAAGCTGGGTT+GGG | + | chr3_4:41399727-41399746 | Msa0500840:intron | 40.0% | |
| GGTAAGGATTTAGGCTTCTT+TGG | + | chr3_4:41400042-41400061 | Msa0500840:intron | 40.0% | |
| ! | TGGATAGAATGACTTTGGAG+GGG | - | chr3_4:41400342-41400361 | None:intergenic | 40.0% |
| CATGGATAGAATGACTTTGG+AGG | - | chr3_4:41400344-41400363 | None:intergenic | 40.0% | |
| !! | AGGTACTGCAAGCATTTTCA+AGG | + | chr3_4:41400791-41400810 | Msa0500840:CDS | 40.0% |
| ! | GTTGCCTTTTCACCTTCAAA+AGG | + | chr3_4:41400846-41400865 | Msa0500840:CDS | 40.0% |
| CTTGAGTTACTCATCCATCA+TGG | - | chr3_4:41400947-41400966 | None:intergenic | 40.0% | |
| TCCAAGATAAGCATCTAGGT+AGG | + | chr3_4:41401045-41401064 | Msa0500840:intron | 40.0% | |
| ACCTACCTAGATGCTTATCT+TGG | - | chr3_4:41401049-41401068 | None:intergenic | 40.0% | |
| ! | CTGTTACTTCTGTGAATCAG+TGG | + | chr3_4:41401101-41401120 | Msa0500840:intron | 40.0% |
| TGCAGAAGCAGGATACAAAA+TGG | - | chr3_4:41401370-41401389 | None:intergenic | 40.0% | |
| TTTGTATCCTGCTTCTGCAA+AGG | + | chr3_4:41401371-41401390 | Msa0500840:CDS | 40.0% | |
| ! | GTCGTGGATTTGAAGTTACA+AGG | + | chr3_4:41401526-41401545 | Msa0500840:CDS | 40.0% |
| GTGTGTCACATTATGCAGTT+TGG | + | chr3_4:41401784-41401803 | Msa0500840:intron | 40.0% | |
| TGTCACATTATGCAGTTTGG+AGG | + | chr3_4:41401787-41401806 | Msa0500840:intron | 40.0% | |
| ATAGGATTGACAAACCCTAC+CGG | + | chr3_4:41401991-41402010 | Msa0500840:intron | 40.0% | |
| ! | TGTAGAAGTATATGCATGCC+CGG | - | chr3_4:41402013-41402032 | None:intergenic | 40.0% |
| TCTCACACTCGGACTATTTA+TGG | + | chr3_4:41402147-41402166 | Msa0500840:intron | 40.0% | |
| CTGACGGCTAAGTTAGAATT+AGG | - | chr3_4:41402205-41402224 | None:intergenic | 40.0% | |
| CTAATTCTAACTTAGCCGTC+AGG | + | chr3_4:41402203-41402222 | Msa0500840:intron | 40.0% | |
| TGAAGCTACTGTAACAACAG+GGG | - | chr3_4:41402277-41402296 | None:intergenic | 40.0% | |
| GTGAAGCTACTGTAACAACA+GGG | - | chr3_4:41402278-41402297 | None:intergenic | 40.0% | |
| TTGAAGGCAAAAGGGCAATA+AGG | - | chr3_4:41402321-41402340 | None:intergenic | 40.0% | |
| ! | CTTAACCTTTTCGTACCTGT+TGG | + | chr3_4:41402460-41402479 | Msa0500840:intron | 40.0% |
| CTTAACCAACAGGTACGAAA+AGG | - | chr3_4:41402468-41402487 | None:intergenic | 40.0% | |
| CATTAAGACGCTTAACCAAC+AGG | - | chr3_4:41402478-41402497 | None:intergenic | 40.0% | |
| AAGCGTCTTAATGACTCTTG+AGG | + | chr3_4:41402485-41402504 | Msa0500840:intron | 40.0% | |
| GGATTTGTGATTACCCTTCA+AGG | - | chr3_4:41402765-41402784 | None:intergenic | 40.0% | |
| !! | CCCCAAAAGTATTCTCTCAA+AGG | - | chr3_4:41402789-41402808 | None:intergenic | 40.0% |
| AACTTGAGTCACTCCTATGT+GGG | - | chr3_4:41402971-41402990 | None:intergenic | 40.0% | |
| AAACTTGAGTCACTCCTATG+TGG | - | chr3_4:41402972-41402991 | None:intergenic | 40.0% | |
| !! | TCCATTGTTGTCTGTTTCTG+CGG | + | chr3_4:41403421-41403440 | Msa0500840:intron | 40.0% |
| ATCTTCTTTCTCCTGACAGA+TGG | + | chr3_4:41403978-41403997 | Msa0500840:intron | 40.0% | |
| TCTTCTTTCTCCTGACAGAT+GGG | + | chr3_4:41403979-41403998 | Msa0500840:intron | 40.0% | |
| CATAGGATCTCAATGCTTCA+AGG | - | chr3_4:41404015-41404034 | None:intergenic | 40.0% | |
| TTGGTAGGTATTCACATGCT+GGG | - | chr3_4:41404214-41404233 | None:intergenic | 40.0% | |
| ATTGGTAGGTATTCACATGC+TGG | - | chr3_4:41404215-41404234 | None:intergenic | 40.0% | |
| AACTAAGTGCTCGACTCAAT+TGG | - | chr3_4:41404233-41404252 | None:intergenic | 40.0% | |
| AAAAAAAAAGGCAGGAGGGG+AGG | + | chr3_4:41398861-41398880 | Msa0500840:five_prime_UTR | 45.0% | |
| ATGTGATGATAACAGCTGGC+TGG | + | chr3_4:41398887-41398906 | Msa0500840:five_prime_UTR | 45.0% | |
| TGATAACAGCTGGCTGGATT+CGG | + | chr3_4:41398893-41398912 | Msa0500840:five_prime_UTR | 45.0% | |
| GGAGAAGGTGAAGAACAGAA+AGG | - | chr3_4:41398978-41398997 | None:intergenic | 45.0% | |
| AGTTGAAGACAAGGAGGAGA+AGG | - | chr3_4:41398993-41399012 | None:intergenic | 45.0% | |
| CTCCTTGTCTTCAACTTCAC+CGG | + | chr3_4:41398997-41399016 | Msa0500840:CDS | 45.0% | |
| GAGAAGAAAATGGATGCTGC+CGG | - | chr3_4:41399019-41399038 | None:intergenic | 45.0% | |
| AGAGCAGTGGGAGAAGAAAA+TGG | - | chr3_4:41399029-41399048 | None:intergenic | 45.0% | |
| GGTGAAAGTGGAGTTGGAAT+CGG | - | chr3_4:41399060-41399079 | None:intergenic | 45.0% | |
| AGTTGAAGCGAAGGTGAAAG+TGG | - | chr3_4:41399072-41399091 | None:intergenic | 45.0% | |
| CTAGGAAGCTTGTCGAAATC+AGG | - | chr3_4:41399681-41399700 | None:intergenic | 45.0% | |
| CGACATAGTGTGGAGAAACA+AGG | + | chr3_4:41399777-41399796 | Msa0500840:intron | 45.0% | |
| TAGAAAGACTGAACCAGCCT+CGG | - | chr3_4:41400012-41400031 | None:intergenic | 45.0% | |
| ATTGTTGTCCTTAGAGCTGC+TGG | + | chr3_4:41400735-41400754 | Msa0500840:intron | 45.0% | |
| TTGTTGTCCTTAGAGCTGCT+GGG | + | chr3_4:41400736-41400755 | Msa0500840:intron | 45.0% | |
| ! | AGAATAGGCGTTGTTGGATC+AGG | + | chr3_4:41400771-41400790 | Msa0500840:CDS | 45.0% |
| GCAACTGGAGACATAAATGC+AGG | - | chr3_4:41400915-41400934 | None:intergenic | 45.0% | |
| GCAAAGGCTAGCAATGAGAT+TGG | + | chr3_4:41401387-41401406 | Msa0500840:CDS | 45.0% | |
| CTTGAAAAGAAGGGGACACA+AGG | - | chr3_4:41401585-41401604 | None:intergenic | 45.0% | |
| TAGGATTGACAAACCCTACC+GGG | + | chr3_4:41401992-41402011 | Msa0500840:intron | 45.0% | |
| AAGTATATGCATGCCCGGTA+GGG | - | chr3_4:41402008-41402027 | None:intergenic | 45.0% | |
| CGATCATAAGCTACTGATGC+TGG | - | chr3_4:41402036-41402055 | None:intergenic | 45.0% | |
| GTCCGAGTGTGAGAAATAGT+TGG | - | chr3_4:41402141-41402160 | None:intergenic | 45.0% | |
| CATGTTGAACTGGTACCTGA+CGG | - | chr3_4:41402221-41402240 | None:intergenic | 45.0% | |
| GGTGAAGCTACTGTAACAAC+AGG | - | chr3_4:41402279-41402298 | None:intergenic | 45.0% | |
| GGAACTCACCGAATTGAAGA+TGG | - | chr3_4:41402300-41402319 | None:intergenic | 45.0% | |
| ! | TTTTAACCTGCAACAGAGCC+TGG | + | chr3_4:41402623-41402642 | Msa0500840:intron | 45.0% |
| AGCCTGGAAGAATCTCCTTT+CGG | + | chr3_4:41402639-41402658 | Msa0500840:CDS | 45.0% | |
| ATCCGAAAGGAGATTCTTCC+AGG | - | chr3_4:41402644-41402663 | None:intergenic | 45.0% | |
| TGCAACTGAATTGCTCCAGT+CGG | - | chr3_4:41402668-41402687 | None:intergenic | 45.0% | |
| GAAGCCTAATCTTCTTGCCA+TGG | - | chr3_4:41402713-41402732 | None:intergenic | 45.0% | |
| AGAGGACAAACTTCTCCATG+TGG | - | chr3_4:41402887-41402906 | None:intergenic | 45.0% | |
| ACTTGAGTCACTCCTATGTG+GGG | - | chr3_4:41402970-41402989 | None:intergenic | 45.0% | |
| AACAGACAACAATGGATGCG+AGG | - | chr3_4:41403417-41403436 | None:intergenic | 45.0% | |
| !! | CCATTGTTGTCTGTTTCTGC+GGG | + | chr3_4:41403422-41403441 | Msa0500840:intron | 45.0% |
| ATGCTTTCAACCCATCTGTC+AGG | - | chr3_4:41403992-41404011 | None:intergenic | 45.0% | |
| CTCTGCACATCATAGCAATC+TGG | + | chr3_4:41404054-41404073 | Msa0500840:three_prime_UTR | 45.0% | |
| AAGTGCTCGACTCAATTGGT+AGG | - | chr3_4:41404229-41404248 | None:intergenic | 45.0% | |
| CTACACTCCCTCAGAGTTTA+AGG | - | chr3_4:41404259-41404278 | None:intergenic | 45.0% | |
| ! | AAACTCTGAGGGAGTGTAGA+TGG | + | chr3_4:41404260-41404279 | Msa0500840:three_prime_UTR | 45.0% |
| ! | AACTCTGAGGGAGTGTAGAT+GGG | + | chr3_4:41404261-41404280 | Msa0500840:three_prime_UTR | 45.0% |
| GCTGACCGGTTGAATTATCA+CGG | - | chr3_4:41404387-41404406 | None:intergenic | 45.0% | |
| AACTATAGTTCGGAGCTGAC+CGG | - | chr3_4:41404401-41404420 | None:intergenic | 45.0% | |
| !!! | GTTTTAATTATATTATTTTA+GGG | - | chr3_4:41399456-41399475 | None:intergenic | 5.0% |
| !!! | TGTTTTAATTATATTATTTT+AGG | - | chr3_4:41399457-41399476 | None:intergenic | 5.0% |
| CGGTGAAGTTGAAGACAAGG+AGG | - | chr3_4:41398999-41399018 | None:intergenic | 50.0% | |
| TGCCGGTGAAGTTGAAGACA+AGG | - | chr3_4:41399002-41399021 | None:intergenic | 50.0% | |
| GAAAGTGGAGTTGGAATCGG+TGG | - | chr3_4:41399057-41399076 | None:intergenic | 50.0% | |
| AGCGAAGGTGAAAGTGGAGT+TGG | - | chr3_4:41399066-41399085 | None:intergenic | 50.0% | |
| ! | GACGACTTTTGGCGTTGCAT+TGG | - | chr3_4:41399099-41399118 | None:intergenic | 50.0% |
| !! | TCTCTGGTGACGACGACTTT+TGG | - | chr3_4:41399110-41399129 | None:intergenic | 50.0% |
| GGAATTCTTGCCACGTTCTC+TGG | - | chr3_4:41399126-41399145 | None:intergenic | 50.0% | |
| CCTCGTAGATGCTCAATGAG+CGG | - | chr3_4:41399657-41399676 | None:intergenic | 50.0% | |
| ! | CTGGGTTGGGTTCCTTTATG+TGG | + | chr3_4:41399740-41399759 | Msa0500840:intron | 50.0% |
| AGAAAGACTGAACCAGCCTC+GGG | - | chr3_4:41400011-41400030 | None:intergenic | 50.0% | |
| ! | GGCTGGTTCAGTCTTTCTAG+AGG | + | chr3_4:41400013-41400032 | Msa0500840:CDS | 50.0% |
| ! | GTTCAGTCTTTCTAGAGGCG+TGG | + | chr3_4:41400018-41400037 | Msa0500840:CDS | 50.0% |
| ! | TTTCTAGAGGCGTGGAGGTA+AGG | + | chr3_4:41400026-41400045 | Msa0500840:intron | 50.0% |
| AGGCGTGGAGGTAAGGATTT+AGG | + | chr3_4:41400033-41400052 | Msa0500840:intron | 50.0% | |
| ACAACGCCTATTCTGACACG+AGG | - | chr3_4:41400765-41400784 | None:intergenic | 50.0% | |
| ! | CGTGTCAGAATAGGCGTTGT+TGG | + | chr3_4:41400765-41400784 | Msa0500840:CDS | 50.0% |
| ! | TCATGGTGAAGAAGCGCAAC+TGG | - | chr3_4:41400930-41400949 | None:intergenic | 50.0% |
| GTTGCGCTTCTTCACCATGA+TGG | + | chr3_4:41400930-41400949 | Msa0500840:intron | 50.0% | |
| GCATCTAGGTAGGTGAGAGA+AGG | + | chr3_4:41401055-41401074 | Msa0500840:intron | 50.0% | |
| !! | TTGCTAGCCTTTGCAGAAGC+AGG | - | chr3_4:41401381-41401400 | None:intergenic | 50.0% |
| GAAGTATATGCATGCCCGGT+AGG | - | chr3_4:41402009-41402028 | None:intergenic | 50.0% | |
| ATTCTTCCAGGCTCTGTTGC+AGG | - | chr3_4:41402632-41402651 | None:intergenic | 50.0% | |
| ATCTCCTTTCGGATTCCGAC+TGG | + | chr3_4:41402650-41402669 | Msa0500840:CDS | 50.0% | |
| GCTGCCATGGCAAGAAGATT+AGG | + | chr3_4:41402706-41402725 | Msa0500840:CDS | 50.0% | |
| TGTATACCACCCAACACGAC+CGG | + | chr3_4:41402738-41402757 | Msa0500840:CDS | 50.0% | |
| TGTGATTACCCTTCAAGGCC+CGG | - | chr3_4:41402760-41402779 | None:intergenic | 50.0% | |
| !! | GCTAAAGAGTGTTCACCGTC+TGG | + | chr3_4:41402861-41402880 | Msa0500840:intron | 50.0% |
| AACTTCTCCATGTGGCCAGA+CGG | - | chr3_4:41402879-41402898 | None:intergenic | 50.0% | |
| CCCGCAGAAACAGACAACAA+TGG | - | chr3_4:41403425-41403444 | None:intergenic | 50.0% | |
| AGTGGAGTTGGAATCGGTGG+CGG | - | chr3_4:41399054-41399073 | None:intergenic | 55.0% | |
| GCTTCGCCTGCACTTGACAT+TGG | - | chr3_4:41399611-41399630 | None:intergenic | 55.0% | |
| CCGCTCATTGAGCATCTACG+AGG | + | chr3_4:41399654-41399673 | Msa0500840:CDS | 55.0% | |
| GGTTGTCATCACTTCTCCCG+AGG | + | chr3_4:41399992-41400011 | Msa0500840:CDS | 55.0% | |
| ! | CAGTCTTTCTAGAGGCGTGG+AGG | + | chr3_4:41400021-41400040 | Msa0500840:CDS | 55.0% |
| ! | ACTTTGGAGGGGTGCATGCT+TGG | - | chr3_4:41400331-41400350 | None:intergenic | 55.0% |
| GGGATGCCTCGTGTCAGAAT+AGG | + | chr3_4:41400756-41400775 | Msa0500840:CDS | 55.0% | |
| CGACTTGAAAGCCCTTCCTC+TGG | - | chr3_4:41401510-41401529 | None:intergenic | 55.0% | |
| ! | GAGGAAGGGCTTTCAAGTCG+TGG | + | chr3_4:41401510-41401529 | Msa0500840:intron | 55.0% |
| TGCTCCAGTCGGAATCCGAA+AGG | - | chr3_4:41402657-41402676 | None:intergenic | 55.0% | |
| GTATACCACCCAACACGACC+GGG | + | chr3_4:41402739-41402758 | Msa0500840:CDS | 55.0% | |
| ATTGCAGGCTCACCCCACAT+AGG | + | chr3_4:41402955-41402974 | Msa0500840:intron | 55.0% | |
| GTCGTCGTCACCAGAGAACG+TGG | + | chr3_4:41399113-41399132 | Msa0500840:CDS | 60.0% | |
| GTCATCACTTCTCCCGAGGC+TGG | + | chr3_4:41399996-41400015 | Msa0500840:CDS | 60.0% | |
| ! | GAGGCATCCCAGCAGCTCTA+AGG | - | chr3_4:41400746-41400765 | None:intergenic | 60.0% |
| TGGGGAGACAACTGCTGCCA+TGG | + | chr3_4:41402693-41402712 | Msa0500840:CDS | 60.0% | |
| CTTCAAGGCCCGGTCGTGTT+GGG | - | chr3_4:41402750-41402769 | None:intergenic | 60.0% | |
| CAACACGACCGGGCCTTGAA+GGG | + | chr3_4:41402749-41402768 | Msa0500840:CDS | 60.0% | |
| GTGTTCACCGTCTGGCCACA+TGG | + | chr3_4:41402869-41402888 | Msa0500840:intron | 60.0% | |
| GCTGGCTGGATTCGGACAGC+AGG | + | chr3_4:41398901-41398920 | Msa0500840:five_prime_UTR | 65.0% | |
| !! | TCGGTGGCGGAGAGAGCAGT+GGG | - | chr3_4:41399041-41399060 | None:intergenic | 65.0% |
| !! | ATCGGTGGCGGAGAGAGCAG+TGG | - | chr3_4:41399042-41399061 | None:intergenic | 65.0% |
| CCTTCAAGGCCCGGTCGTGT+TGG | - | chr3_4:41402751-41402770 | None:intergenic | 65.0% | |
| CCAACACGACCGGGCCTTGA+AGG | + | chr3_4:41402748-41402767 | Msa0500840:CDS | 65.0% | |
| CAAGGCCCGGTCGTGTTGGG+TGG | - | chr3_4:41402747-41402766 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41398847 | 41404484 | 41398847 | ID=Msa0500840;Name=Msa0500840 |
| chr3_4 | mRNA | 41398847 | 41404484 | 41398847 | ID=Msa0500840-mRNA-1;Parent=Msa0500840;Name=Msa0500840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=104|1|1|1|1|1|9|433|302 |
| chr3_4 | exon | 41398847 | 41399163 | 41398847 | ID=Msa0500840-mRNA-1:exon:8660;Parent=Msa0500840-mRNA-1 |
| chr3_4 | exon | 41399624 | 41399711 | 41399624 | ID=Msa0500840-mRNA-1:exon:8661;Parent=Msa0500840-mRNA-1 |
| chr3_4 | exon | 41399976 | 41400042 | 41399976 | ID=Msa0500840-mRNA-1:exon:8662;Parent=Msa0500840-mRNA-1 |
| chr3_4 | exon | 41400749 | 41400867 | 41400749 | ID=Msa0500840-mRNA-1:exon:8663;Parent=Msa0500840-mRNA-1 |
| chr3_4 | exon | 41401316 | 41401408 | 41401316 | ID=Msa0500840-mRNA-1:exon:8664;Parent=Msa0500840-mRNA-1 |
| chr3_4 | exon | 41401511 | 41401566 | 41401511 | ID=Msa0500840-mRNA-1:exon:8665;Parent=Msa0500840-mRNA-1 |
| chr3_4 | exon | 41402225 | 41402310 | 41402225 | ID=Msa0500840-mRNA-1:exon:8666;Parent=Msa0500840-mRNA-1 |
| chr3_4 | exon | 41402639 | 41402770 | 41402639 | ID=Msa0500840-mRNA-1:exon:8667;Parent=Msa0500840-mRNA-1 |
| chr3_4 | exon | 41403997 | 41404484 | 41403997 | ID=Msa0500840-mRNA-1:exon:8668;Parent=Msa0500840-mRNA-1 |
| chr3_4 | five_prime_UTR | 41398847 | 41398950 | 41398847 | ID=Msa0500840-mRNA-1:five_prime_utr;Parent=Msa0500840-mRNA-1 |
| chr3_4 | CDS | 41398951 | 41399163 | 41398951 | ID=Msa0500840-mRNA-1:cds;Parent=Msa0500840-mRNA-1 |
| chr3_4 | CDS | 41399624 | 41399711 | 41399624 | ID=Msa0500840-mRNA-1:cds;Parent=Msa0500840-mRNA-1 |
| chr3_4 | CDS | 41399976 | 41400042 | 41399976 | ID=Msa0500840-mRNA-1:cds;Parent=Msa0500840-mRNA-1 |
| chr3_4 | CDS | 41400749 | 41400867 | 41400749 | ID=Msa0500840-mRNA-1:cds;Parent=Msa0500840-mRNA-1 |
| chr3_4 | CDS | 41401316 | 41401408 | 41401316 | ID=Msa0500840-mRNA-1:cds;Parent=Msa0500840-mRNA-1 |
| chr3_4 | CDS | 41401511 | 41401566 | 41401511 | ID=Msa0500840-mRNA-1:cds;Parent=Msa0500840-mRNA-1 |
| chr3_4 | CDS | 41402225 | 41402310 | 41402225 | ID=Msa0500840-mRNA-1:cds;Parent=Msa0500840-mRNA-1 |
| chr3_4 | CDS | 41402639 | 41402770 | 41402639 | ID=Msa0500840-mRNA-1:cds;Parent=Msa0500840-mRNA-1 |
| chr3_4 | CDS | 41403997 | 41404051 | 41403997 | ID=Msa0500840-mRNA-1:cds;Parent=Msa0500840-mRNA-1 |
| chr3_4 | three_prime_UTR | 41404052 | 41404484 | 41404052 | ID=Msa0500840-mRNA-1:three_prime_utr;Parent=Msa0500840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
