Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500870 | XP_004501590.1 | 86.230 | 305 | 37 | 3 | 1 | 302 | 1 | 303 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500870 | sp|O48721|HEM4_ARATH | 66.265 | 249 | 82 | 2 | 53 | 299 | 65 | 313 | 6.72e-120 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500870 | A0A1S2YBB1 | 86.230 | 305 | 37 | 3 | 1 | 302 | 1 | 303 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0429860 | Msa0500870 | 0.899075 | 2.836887e-77 | -8.615850e-47 |
| Msa0500840 | Msa0500870 | 0.993052 | 3.897821e-197 | -8.615850e-47 |
| Msa0500870 | Msa0745250 | 0.819147 | 1.352904e-52 | -8.615850e-47 |
| Msa0500870 | Msa0865520 | 0.829169 | 5.984322e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500870 | MtrunA17_Chr3g0133641 | 88.997 | 309 | 26 | 2 | 1 | 302 | 1 | 308 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500870 | AT2G26540.1 | 66.265 | 249 | 82 | 2 | 53 | 299 | 65 | 313 | 6.83e-121 | 350 |
| Msa0500870 | AT2G26540.2 | 66.383 | 235 | 77 | 2 | 53 | 285 | 65 | 299 | 9.55e-114 | 330 |
| Msa0500870 | AT2G26540.3 | 66.316 | 190 | 63 | 1 | 53 | 241 | 65 | 254 | 5.28e-89 | 266 |
Find 112 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTATTTGATTAGTTTAT+TGG | 0.152477 | 3_4:-41505588 | Msa0500870:three_prime_UTR |
| CTACACTCCCTCAGAGTTTA+AGG | 0.153526 | 3_4:+41505435 | None:intergenic |
| AGAGCAGTGGGAGAAGAAAA+TGG | 0.284379 | 3_4:+41510665 | None:intergenic |
| GCAATTCAGTTGCATGTATT+GGG | 0.291215 | 3_4:-41507017 | Msa0500870:CDS |
| TTGCAGATAATGCATTTGAT+TGG | 0.331352 | 3_4:-41509721 | Msa0500870:intron |
| GGAATTCTTGCCACGTTCTC+TGG | 0.335170 | 3_4:+41510568 | None:intergenic |
| TCTCTGGTGACGACGACTTT+TGG | 0.336746 | 3_4:+41510584 | None:intergenic |
| AAACTCTGAGGGAGTGTAGA+TGG | 0.337770 | 3_4:-41505431 | Msa0500870:three_prime_UTR |
| ATTGTTGTCCTTAGAGCTGC+TGG | 0.341737 | 3_4:-41508956 | Msa0500870:intron |
| ATCCGAAAGGAGATTCTTCC+AGG | 0.344583 | 3_4:+41507050 | None:intergenic |
| CCTTCAAGGCCCGGTCGTGT+TGG | 0.368846 | 3_4:+41506943 | None:intergenic |
| AGCAATTCAGTTGCATGTAT+TGG | 0.375651 | 3_4:-41507018 | Msa0500870:CDS |
| CCAACACGACCGGGCCTTGA+AGG | 0.382919 | 3_4:-41506943 | Msa0500870:CDS |
| CCCAACACGTTTCAATTCAA+TGG | 0.383818 | 3_4:-41510759 | Msa0500870:exon |
| CTTCAAGGCCCGGTCGTGTT+GGG | 0.385029 | 3_4:+41506944 | None:intergenic |
| CTAGGAAGCTTGTCGAAATC+AGG | 0.387691 | 3_4:+41510013 | None:intergenic |
| TTCCAAGCTTATCACTGCTT+TGG | 0.388502 | 3_4:-41510549 | Msa0500870:intron |
| GAAGCATGAAATCAATTGTT+TGG | 0.402913 | 3_4:-41510065 | Msa0500870:CDS |
| GTCATCACTTCTCCCGAGGC+TGG | 0.415094 | 3_4:-41509695 | Msa0500870:CDS |
| TGATAACAGCTGGCTGGATT+CGG | 0.424755 | 3_4:-41510798 | Msa0500870:five_prime_UTR |
| TGCAGAAGCAGGATACAAAA+TGG | 0.429168 | 3_4:+41508324 | None:intergenic |
| TACAAAAGACATACAACAAT+CGG | 0.433483 | 3_4:-41505242 | Msa0500870:three_prime_UTR |
| TTGCTAGCCTTTGCAGAAGC+AGG | 0.435597 | 3_4:+41508313 | None:intergenic |
| GGTGAAGCTACTGTAACAAC+AGG | 0.436046 | 3_4:+41507415 | None:intergenic |
| AGCCTGGAAGAATCTCCTTT+CGG | 0.436206 | 3_4:-41507052 | Msa0500870:CDS |
| GAGAAGGTGAAGAACAGAAA+GGG | 0.437683 | 3_4:+41510717 | None:intergenic |
| CTACCTCAATAAGTCATCAT+AGG | 0.441135 | 3_4:+41505662 | None:intergenic |
| ATCTGATCAACATGTTGAAC+TGG | 0.442184 | 3_4:+41507463 | None:intergenic |
| TGCAGATAATGCATTTGATT+GGG | 0.443776 | 3_4:-41509720 | Msa0500870:intron |
| AGTTGAAGCGAAGGTGAAAG+TGG | 0.443973 | 3_4:+41510622 | None:intergenic |
| GCTGCCATGGCAAGAAGATT+AGG | 0.444208 | 3_4:-41506985 | Msa0500870:CDS |
| CGTGTCAGAATAGGCGTTGT+TGG | 0.445317 | 3_4:-41508926 | Msa0500870:CDS |
| AAAAGGCAACATCAAGTGAT+TGG | 0.445912 | 3_4:+41508858 | None:intergenic |
| CTTAAGATTAAACTATAGTT+CGG | 0.455622 | 3_4:+41505283 | None:intergenic |
| CATAGGATCTCAATGCTTCA+AGG | 0.457340 | 3_4:+41505679 | None:intergenic |
| CTCTGCACATCATAGCAATC+TGG | 0.459530 | 3_4:-41505637 | Msa0500870:three_prime_UTR |
| AACTAAGTGCTCGACTCAAT+TGG | 0.460553 | 3_4:+41505461 | None:intergenic |
| AGAATAGGCGTTGTTGGATC+AGG | 0.460750 | 3_4:-41508920 | Msa0500870:CDS |
| CTCCTTGTCTTCAACTTCAC+CGG | 0.464100 | 3_4:-41510694 | Msa0500870:CDS |
| GGATTTGTGATTACCCTTCA+AGG | 0.467965 | 3_4:+41506929 | None:intergenic |
| AGAAGGTGAAGAACAGAAAG+GGG | 0.471647 | 3_4:+41510718 | None:intergenic |
| TAGCTTCACCATCTTCAATT+CGG | 0.479995 | 3_4:-41507402 | Msa0500870:intron |
| ATCTCCTTTCGGATTCCGAC+TGG | 0.480360 | 3_4:-41507041 | Msa0500870:CDS |
| AGTTGAAGACAAGGAGGAGA+AGG | 0.483406 | 3_4:+41510701 | None:intergenic |
| TAGAAAGACTGAACCAGCCT+CGG | 0.488989 | 3_4:+41509682 | None:intergenic |
| TGTATACCACCCAACACGAC+CGG | 0.493750 | 3_4:-41506953 | Msa0500870:CDS |
| ACTCTACATAAATAAACAGC+TGG | 0.500698 | 3_4:+41505606 | None:intergenic |
| ATTGGTAGGTATTCACATGC+TGG | 0.502830 | 3_4:+41505479 | None:intergenic |
| AGTTTATTGGATTGACATTG+TGG | 0.508585 | 3_4:-41505575 | Msa0500870:three_prime_UTR |
| GGAGAAGGTGAAGAACAGAA+AGG | 0.510753 | 3_4:+41510716 | None:intergenic |
| AGCGAAGGTGAAAGTGGAGT+TGG | 0.511323 | 3_4:+41510628 | None:intergenic |
| TGTGATTACCCTTCAAGGCC+CGG | 0.515459 | 3_4:+41506934 | None:intergenic |
| TAAGACCGTGATAATTCAAC+CGG | 0.516216 | 3_4:-41505312 | Msa0500870:three_prime_UTR |
| GGTGAAAGTGGAGTTGGAAT+CGG | 0.517382 | 3_4:+41510634 | None:intergenic |
| ATTAAGATTAAACTCAACTA+AGG | 0.517507 | 3_4:+41505340 | None:intergenic |
| GAGGAAGGGCTTTCAAGTCG+TGG | 0.524123 | 3_4:-41508181 | Msa0500870:CDS |
| GCAAAGGCTAGCAATGAGAT+TGG | 0.524315 | 3_4:-41508304 | Msa0500870:intron |
| GGGATGCCTCGTGTCAGAAT+AGG | 0.529726 | 3_4:-41508935 | Msa0500870:CDS |
| GTCGTGGATTTGAAGTTACA+AGG | 0.531380 | 3_4:-41508165 | Msa0500870:CDS |
| AACTCTGAGGGAGTGTAGAT+GGG | 0.532287 | 3_4:-41505430 | Msa0500870:three_prime_UTR |
| TTTGTATCCTGCTTCTGCAA+AGG | 0.534447 | 3_4:-41508320 | Msa0500870:CDS |
| GCCATTGAATTGAAACGTGT+TGG | 0.534538 | 3_4:+41510758 | None:intergenic |
| TACCAAAGCAGTGATAAGCT+TGG | 0.535051 | 3_4:+41510547 | None:intergenic |
| AACTATAGTTCGGAGCTGAC+CGG | 0.535054 | 3_4:+41505293 | None:intergenic |
| TGGGGAGACAACTGCTGCCA+TGG | 0.540541 | 3_4:-41506998 | Msa0500870:CDS |
| CCATTGAATTGAAACGTGTT+GGG | 0.543901 | 3_4:+41510759 | None:intergenic |
| GCTGGCTGGATTCGGACAGC+AGG | 0.547654 | 3_4:-41510790 | Msa0500870:five_prime_UTR |
| GATCCTATGATGACTTATTG+AGG | 0.547694 | 3_4:-41505665 | Msa0500870:CDS |
| AGAAAGACTGAACCAGCCTC+GGG | 0.549715 | 3_4:+41509683 | None:intergenic |
| AGTTTGTCCTTAAACTCTGA+GGG | 0.549996 | 3_4:-41505442 | Msa0500870:three_prime_UTR |
| TTGTTGTCCTTAGAGCTGCT+GGG | 0.551291 | 3_4:-41508955 | Msa0500870:intron |
| GTTCAGTCTTTCTAGAGGCG+TGG | 0.551620 | 3_4:-41509673 | Msa0500870:CDS |
| AGTTCAACATGTTGATCAGA+TGG | 0.554586 | 3_4:-41507461 | Msa0500870:CDS |
| AGTGGAGTTGGAATCGGTGG+CGG | 0.555370 | 3_4:+41510640 | None:intergenic |
| CAACACGACCGGGCCTTGAA+GGG | 0.558934 | 3_4:-41506942 | Msa0500870:intron |
| GAAGCCTAATCTTCTTGCCA+TGG | 0.560219 | 3_4:+41506981 | None:intergenic |
| CAAGGCCCGGTCGTGTTGGG+TGG | 0.563613 | 3_4:+41506947 | None:intergenic |
| ATGTGATGATAACAGCTGGC+TGG | 0.563667 | 3_4:-41510804 | Msa0500870:five_prime_UTR |
| GGAACTCACCGAATTGAAGA+TGG | 0.567974 | 3_4:+41507394 | None:intergenic |
| TTGGTAGGTATTCACATGCT+GGG | 0.570026 | 3_4:+41505480 | None:intergenic |
| CAATTCAGTTGCATGTATTG+GGG | 0.573533 | 3_4:-41507016 | Msa0500870:CDS |
| AGCTTACCGCTTAATAAACT+AGG | 0.573783 | 3_4:+41509995 | None:intergenic |
| ATCGGTGGCGGAGAGAGCAG+TGG | 0.578656 | 3_4:+41510652 | None:intergenic |
| TATTGGATTGACATTGTGGA+TGG | 0.579278 | 3_4:-41505571 | Msa0500870:three_prime_UTR |
| TCGGTGGCGGAGAGAGCAGT+GGG | 0.581834 | 3_4:+41510653 | None:intergenic |
| AAGCTTCCTAGTTTATTAAG+CGG | 0.582321 | 3_4:-41510001 | Msa0500870:intron |
| GTCGTCGTCACCAGAGAACG+TGG | 0.586312 | 3_4:-41510578 | Msa0500870:CDS |
| GGTTGTCATCACTTCTCCCG+AGG | 0.603408 | 3_4:-41509699 | Msa0500870:CDS |
| GGCTGGTTCAGTCTTTCTAG+AGG | 0.604479 | 3_4:-41509678 | Msa0500870:CDS |
| TAGTTTGTCCTTAAACTCTG+AGG | 0.605443 | 3_4:-41505443 | Msa0500870:three_prime_UTR |
| TGCTCCAGTCGGAATCCGAA+AGG | 0.605771 | 3_4:+41507037 | None:intergenic |
| TTGAATTGAAACGTGTTGGG+TGG | 0.608144 | 3_4:+41510762 | None:intergenic |
| GTATACCACCCAACACGACC+GGG | 0.609651 | 3_4:-41506952 | Msa0500870:CDS |
| ATTGGAAGAAGTTGAAGCGA+AGG | 0.609862 | 3_4:+41510613 | None:intergenic |
| TTGTATTCTTGAGACTCATG+AGG | 0.626049 | 3_4:-41505529 | Msa0500870:three_prime_UTR |
| TATTTACATAACCAGAGGAA+GGG | 0.627420 | 3_4:-41508195 | Msa0500870:intron |
| TGCCGGTGAAGTTGAAGACA+AGG | 0.629472 | 3_4:+41510692 | None:intergenic |
| TGCAACTGAATTGCTCCAGT+CGG | 0.630863 | 3_4:+41507026 | None:intergenic |
| CAGTCTTTCTAGAGGCGTGG+AGG | 0.633928 | 3_4:-41509670 | Msa0500870:intron |
| GAAAGTGGAGTTGGAATCGG+TGG | 0.636840 | 3_4:+41510637 | None:intergenic |
| AAGTGCTCGACTCAATTGGT+AGG | 0.637461 | 3_4:+41505465 | None:intergenic |
| GTTGATGTGATGATAACAGC+TGG | 0.639519 | 3_4:-41510808 | Msa0500870:five_prime_UTR |
| GAGAAGAAAATGGATGCTGC+CGG | 0.650956 | 3_4:+41510675 | None:intergenic |
| GCTGACCGGTTGAATTATCA+CGG | 0.654332 | 3_4:+41505307 | None:intergenic |
| CCTCGTAGATGCTCAATGAG+CGG | 0.678328 | 3_4:+41510037 | None:intergenic |
| GTGAAGCTACTGTAACAACA+GGG | 0.684647 | 3_4:+41507416 | None:intergenic |
| AAGGATGAATACATATACAA+CGG | 0.685902 | 3_4:-41508146 | Msa0500870:intron |
| CGGTGAAGTTGAAGACAAGG+AGG | 0.693418 | 3_4:+41510695 | None:intergenic |
| CCGCTCATTGAGCATCTACG+AGG | 0.704354 | 3_4:-41510037 | Msa0500870:CDS |
| CAACAATCGGAAGTGATGAG+CGG | 0.710653 | 3_4:-41505229 | Msa0500870:three_prime_UTR |
| ACAACGCCTATTCTGACACG+AGG | 0.726929 | 3_4:+41508929 | None:intergenic |
| TGAAGCTACTGTAACAACAG+GGG | 0.755969 | 3_4:+41507417 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTTAAAAAAAAA+AGG | - | chr3_4:41505231-41505250 | Msa0500870:three_prime_UTR | 0.0% |
| !!! | TTTTAATAATTTTTTTACAG+AGG | - | chr3_4:41505786-41505805 | Msa0500870:intron | 10.0% |
| !!! | TTTAATAATTTTTTTACAGA+GGG | - | chr3_4:41505787-41505806 | Msa0500870:intron | 10.0% |
| !! | AATAGCATAAAAAATTATTA+GGG | + | chr3_4:41506842-41506861 | None:intergenic | 10.0% |
| !! | AAATAGCATAAAAAATTATT+AGG | + | chr3_4:41506843-41506862 | None:intergenic | 10.0% |
| !!! | TTTTTTATGCTATTTTAATT+AGG | - | chr3_4:41506848-41506867 | Msa0500870:intron | 10.0% |
| !! | TTCAATAAATAATTATCATT+TGG | - | chr3_4:41508324-41508343 | Msa0500870:CDS | 10.0% |
| !!! | TATATTTTTTTAAAATGATG+TGG | - | chr3_4:41509666-41509685 | Msa0500870:intron | 10.0% |
| !! | TTTATTTAAAAAAAAAAGGC+AGG | - | chr3_4:41505235-41505254 | Msa0500870:three_prime_UTR | 15.0% |
| !!! | TTATATTATTTTAGGGAAAA+AGG | + | chr3_4:41505831-41505850 | None:intergenic | 15.0% |
| !! | ATTTCAATAAAATGAGAAAT+AGG | - | chr3_4:41505896-41505915 | Msa0500870:intron | 15.0% |
| !! | AATCATTTGAAGATAATTAA+AGG | + | chr3_4:41506532-41506551 | None:intergenic | 15.0% |
| !!! | TAATTATCTTCAAATGATTT+TGG | - | chr3_4:41506533-41506552 | Msa0500870:intron | 15.0% |
| !! | AAAATTTCAAAATCATTTGA+AGG | + | chr3_4:41506648-41506667 | None:intergenic | 15.0% |
| !! | AAAAATTATTAGGGAAAAAA+CGG | + | chr3_4:41506833-41506852 | None:intergenic | 15.0% |
| !! | ACAAAATAATAGTAAGATTT+GGG | + | chr3_4:41507374-41507393 | None:intergenic | 15.0% |
| !! | CAAAAATAGTAAATTTATCT+TGG | - | chr3_4:41508249-41508268 | Msa0500870:intron | 15.0% |
| !! | AAAAAATTTGATTGCAAAAA+TGG | - | chr3_4:41508451-41508470 | Msa0500870:intron | 15.0% |
| !!! | TATATGTGTTTTTTAAATGA+AGG | + | chr3_4:41509387-41509406 | None:intergenic | 15.0% |
| !!! | TATTGATTAACAATAAACAT+GGG | + | chr3_4:41509522-41509541 | None:intergenic | 15.0% |
| !! | GAAAAAAGAAAGAAAAAAAA+AGG | + | chr3_4:41510194-41510213 | None:intergenic | 15.0% |
| !! | TATTGACAAATTGTAACATT+AGG | - | chr3_4:41505929-41505948 | Msa0500870:intron | 20.0% |
| !!! | TTAAGTTGAAAAAATCATCA+TGG | + | chr3_4:41506196-41506215 | None:intergenic | 20.0% |
| !!! | TTCAATGTTTTTAATTGTTG+TGG | - | chr3_4:41506981-41507000 | Msa0500870:CDS | 20.0% |
| !! | AAGTTACAAAAGAAAAAAAG+AGG | + | chr3_4:41507046-41507065 | None:intergenic | 20.0% |
| !! | AATTAAGACTGTTAATCATT+TGG | + | chr3_4:41507100-41507119 | None:intergenic | 20.0% |
| !! | AAGTGTAAACTAAGTTTAAA+TGG | - | chr3_4:41507269-41507288 | Msa0500870:intron | 20.0% |
| !! | CACAAAATAATAGTAAGATT+TGG | + | chr3_4:41507375-41507394 | None:intergenic | 20.0% |
| !!! | CAAATCTTACTATTATTTTG+TGG | - | chr3_4:41507373-41507392 | Msa0500870:intron | 20.0% |
| !!! | TATTATTTTGTGGATATTCA+AGG | - | chr3_4:41507383-41507402 | Msa0500870:intron | 20.0% |
| !! | ATAACTACATAAATTTACTC+TGG | - | chr3_4:41507507-41507526 | Msa0500870:intron | 20.0% |
| !!! | ATTTAATATTTTTCAGCAAC+AGG | - | chr3_4:41507682-41507701 | Msa0500870:intron | 20.0% |
| !!! | GTAGTTTTATTTGCAATTTT+GGG | + | chr3_4:41507730-41507749 | None:intergenic | 20.0% |
| !!! | TATATTTTCTTGAAAAGAAG+GGG | + | chr3_4:41507975-41507994 | None:intergenic | 20.0% |
| !!! | CTATATTTTCTTGAAAAGAA+GGG | + | chr3_4:41507976-41507995 | None:intergenic | 20.0% |
| !!! | ACTATATTTTCTTGAAAAGA+AGG | + | chr3_4:41507977-41507996 | None:intergenic | 20.0% |
| !! | GAAACTATTAAAAAACTTGA+AGG | + | chr3_4:41508719-41508738 | None:intergenic | 20.0% |
| !! | TACTATATGTAGATTTGAAA+TGG | + | chr3_4:41508746-41508765 | None:intergenic | 20.0% |
| !!! | ATAACAAGCTCTTTTATTTT+TGG | - | chr3_4:41509312-41509331 | Msa0500870:intron | 20.0% |
| !!! | GTATTGATTAACAATAAACA+TGG | + | chr3_4:41509523-41509542 | None:intergenic | 20.0% |
| !!! | TTTAAAATGATGTGGTTAAA+TGG | - | chr3_4:41509674-41509693 | Msa0500870:CDS | 20.0% |
| !! | ATAAGATATCTACATAAACT+TGG | + | chr3_4:41510293-41510312 | None:intergenic | 20.0% |
| !!! | AGAGTATTTGATTAGTTTAT+TGG | - | chr3_4:41510485-41510504 | Msa0500870:intron | 20.0% |
| !!! | TAAGATTTTCATGTTTTGTA+TGG | - | chr3_4:41510688-41510707 | Msa0500870:CDS | 20.0% |
| !! | ATTAAGATTAAACTCAACTA+AGG | + | chr3_4:41510736-41510755 | None:intergenic | 20.0% |
| !! | CTTAAGATTAAACTATAGTT+CGG | + | chr3_4:41510793-41510812 | None:intergenic | 20.0% |
| ! | ATTTAAAAAAAAAAGGCAGG+AGG | - | chr3_4:41505238-41505257 | Msa0500870:three_prime_UTR | 25.0% |
| ! | TTTAAAAAAAAAAGGCAGGA+GGG | - | chr3_4:41505239-41505258 | Msa0500870:three_prime_UTR | 25.0% |
| ! | TTAGATATCAATCCACATAA+AGG | + | chr3_4:41506137-41506156 | None:intergenic | 25.0% |
| ! | TTAATGAGTGAAAAGTGATA+GGG | + | chr3_4:41506309-41506328 | None:intergenic | 25.0% |
| ! | ATTAATGAGTGAAAAGTGAT+AGG | + | chr3_4:41506310-41506329 | None:intergenic | 25.0% |
| !! | AATTTTGAATCTACTGTTGA+TGG | - | chr3_4:41506557-41506576 | Msa0500870:intron | 25.0% |
| ! | AAATCATTTGAAGGTAACTA+AGG | + | chr3_4:41506639-41506658 | None:intergenic | 25.0% |
| ! | GTTAATATTGAAGGGAAAAA+TGG | + | chr3_4:41506678-41506697 | None:intergenic | 25.0% |
| !! | TTTTCCCTTCAATATTAACT+TGG | - | chr3_4:41506679-41506698 | Msa0500870:intron | 25.0% |
| ! | ATGACTTAGATTATACATCA+AGG | + | chr3_4:41506921-41506940 | None:intergenic | 25.0% |
| ! | TTACACTTAACTGATAAACA+TGG | + | chr3_4:41507257-41507276 | None:intergenic | 25.0% |
| ! | TTATCTTGGAACTATTGTTA+TGG | + | chr3_4:41507417-41507436 | None:intergenic | 25.0% |
| ! | ACTATTATTCTGATACTGAT+TGG | + | chr3_4:41507591-41507610 | None:intergenic | 25.0% |
| !!! | GAAGCTTGTTTTCAATAAAA+TGG | - | chr3_4:41507621-41507640 | Msa0500870:intron | 25.0% |
| ! | GTTGTGAAAGAAACTTATTA+AGG | - | chr3_4:41507659-41507678 | Msa0500870:intron | 25.0% |
| !!! | GGTAGTTTTATTTGCAATTT+TGG | + | chr3_4:41507731-41507750 | None:intergenic | 25.0% |
| ! | AAGGATGAATACATATACAA+CGG | - | chr3_4:41507927-41507946 | Msa0500870:intron | 25.0% |
| ! | GTATTTGATATAAAATGCAC+AGG | + | chr3_4:41508277-41508296 | None:intergenic | 25.0% |
| ! | TGCTTATTTGATTGCTAAAA+TGG | - | chr3_4:41508476-41508495 | Msa0500870:intron | 25.0% |
| ! | TAAAAAACTTGAAGGCAAAA+GGG | + | chr3_4:41508711-41508730 | None:intergenic | 25.0% |
| ! | TTAAAAAACTTGAAGGCAAA+AGG | + | chr3_4:41508712-41508731 | None:intergenic | 25.0% |
| !! | TTTTATACTAACTGTGTAAG+CGG | - | chr3_4:41508783-41508802 | Msa0500870:intron | 25.0% |
| !! | AATACGTATGACATTTTCTT+AGG | - | chr3_4:41508947-41508966 | Msa0500870:intron | 25.0% |
| !!! | TAACAGGTTTTGAATACTTT+AGG | + | chr3_4:41509216-41509235 | None:intergenic | 25.0% |
| ! | CTCTTTAGCATATATTTAAC+AGG | + | chr3_4:41509232-41509251 | None:intergenic | 25.0% |
| !!! | CTTTTATTTTTGGAAATTGC+AGG | - | chr3_4:41509322-41509341 | Msa0500870:intron | 25.0% |
| ! | TCGAGTTAGTAAAAAGTTAT+GGG | + | chr3_4:41509416-41509435 | None:intergenic | 25.0% |
| !! | TTCGAGTTAGTAAAAAGTTA+TGG | + | chr3_4:41509417-41509436 | None:intergenic | 25.0% |
| ! | TTTCACTTCATTAAGCTATA+TGG | - | chr3_4:41509478-41509497 | Msa0500870:intron | 25.0% |
| ! | TTGTTAATCAATACACATGA+TGG | - | chr3_4:41509529-41509548 | Msa0500870:intron | 25.0% |
| ! | AGTAGCATATAAAAGATACA+TGG | + | chr3_4:41510022-41510041 | None:intergenic | 25.0% |
| !! | ATTAGAAGTATAGACAAGTT+TGG | - | chr3_4:41510132-41510151 | Msa0500870:intron | 25.0% |
| ! | TAATTGATTGCAAGTATTTC+AGG | - | chr3_4:41510258-41510277 | Msa0500870:intron | 25.0% |
| ! | AATTGATTGCAAGTATTTCA+GGG | - | chr3_4:41510259-41510278 | Msa0500870:intron | 25.0% |
| ! | AGAAAGAAGATTGTCAAAAA+CGG | + | chr3_4:41510351-41510370 | None:intergenic | 25.0% |
| ! | TACAAAAGACATACAACAAT+CGG | - | chr3_4:41510831-41510850 | Msa0500870:five_prime_UTR | 25.0% |
| TTAAAAAAAAAAGGCAGGAG+GGG | - | chr3_4:41505240-41505259 | Msa0500870:three_prime_UTR | 30.0% | |
| GTAATGTAATGTAATGCGTT+AGG | + | chr3_4:41505593-41505612 | None:intergenic | 30.0% | |
| GAAGCATGAAATCAATTGTT+TGG | - | chr3_4:41506008-41506027 | Msa0500870:intron | 30.0% | |
| AAGCTTCCTAGTTTATTAAG+CGG | - | chr3_4:41506072-41506091 | Msa0500870:intron | 30.0% | |
| ATATCTAAATCGACATAGTG+TGG | - | chr3_4:41506149-41506168 | Msa0500870:intron | 30.0% | |
| ATTCGTGTTATCATGTGTAT+CGG | + | chr3_4:41506255-41506274 | None:intergenic | 30.0% | |
| CACTCATTAATTTCTTCTCA+TGG | - | chr3_4:41506319-41506338 | Msa0500870:intron | 30.0% | |
| TTGCAGATAATGCATTTGAT+TGG | - | chr3_4:41506352-41506371 | Msa0500870:intron | 30.0% | |
| TGCAGATAATGCATTTGATT+GGG | - | chr3_4:41506353-41506372 | Msa0500870:intron | 30.0% | |
| CACTCCAAGTTAATATTGAA+GGG | + | chr3_4:41506686-41506705 | None:intergenic | 30.0% | |
| AATTTAGGTAAACCTCATCA+TGG | + | chr3_4:41506744-41506763 | None:intergenic | 30.0% | |
| CAACAGTCTCTACAAAATTT+AGG | + | chr3_4:41506759-41506778 | None:intergenic | 30.0% | |
| ! | TAAACATGGATACCTTTTGA+AGG | + | chr3_4:41507243-41507262 | None:intergenic | 30.0% |
| !! | ATCTTTAGCCTTTTGTTAGT+AGG | - | chr3_4:41507554-41507573 | Msa0500870:intron | 30.0% |
| TGTGATATTTACATAACCAG+AGG | - | chr3_4:41507873-41507892 | Msa0500870:intron | 30.0% | |
| ATATTTACATAACCAGAGGA+AGG | - | chr3_4:41507877-41507896 | Msa0500870:intron | 30.0% | |
| TATTTACATAACCAGAGGAA+GGG | - | chr3_4:41507878-41507897 | Msa0500870:intron | 30.0% | |
| ATTGCCTGTAATATGTTTCA+TGG | - | chr3_4:41508084-41508103 | Msa0500870:intron | 30.0% | |
| AATATGTTTCATGGTGTGTT+TGG | - | chr3_4:41508093-41508112 | Msa0500870:intron | 30.0% | |
| TGGAGGAAAATGTTACAAAA+AGG | - | chr3_4:41508186-41508205 | Msa0500870:intron | 30.0% | |
| GGAGGAAAATGTTACAAAAA+GGG | - | chr3_4:41508187-41508206 | Msa0500870:intron | 30.0% | |
| GAGGAAAATGTTACAAAAAG+GGG | - | chr3_4:41508188-41508207 | Msa0500870:intron | 30.0% | |
| AGGAAAATGTTACAAAAAGG+GGG | - | chr3_4:41508189-41508208 | Msa0500870:intron | 30.0% | |
| TATCATGTGCAAACTTGTAT+AGG | - | chr3_4:41508217-41508236 | Msa0500870:intron | 30.0% | |
| TAACCTATGCAATATTGCAT+AGG | - | chr3_4:41508355-41508374 | Msa0500870:CDS | 30.0% | |
| AATCCTATGCAATATTGCAT+AGG | + | chr3_4:41508361-41508380 | None:intergenic | 30.0% | |
| TGCAGGTTAAAAAATCAGTT+GGG | + | chr3_4:41508997-41509016 | None:intergenic | 30.0% | |
| TTGCAGGTTAAAAAATCAGT+TGG | + | chr3_4:41508998-41509017 | None:intergenic | 30.0% | |
| !! | ACCTTTGAGAGAATACTTTT+GGG | - | chr3_4:41509167-41509186 | Msa0500870:intron | 30.0% |
| TTGTGTGAACTATTTCAAAG+AGG | + | chr3_4:41509287-41509306 | None:intergenic | 30.0% | |
| ! | CATTTTACTGTTCAACTGTT+AGG | - | chr3_4:41509597-41509616 | Msa0500870:intron | 30.0% |
| !! | AATGCTTTTTATTTCGTCGA+TGG | - | chr3_4:41509734-41509753 | Msa0500870:intron | 30.0% |
| TAGTATTACACAGCATTTAG+AGG | + | chr3_4:41509872-41509891 | None:intergenic | 30.0% | |
| TAAATGCTGTGTAATACTAG+TGG | - | chr3_4:41509873-41509892 | Msa0500870:intron | 30.0% | |
| TGTTGTTGAAGCTGAATTTA+TGG | - | chr3_4:41510043-41510062 | Msa0500870:CDS | 30.0% | |
| ACTCTACATAAATAAACAGC+TGG | + | chr3_4:41510470-41510489 | None:intergenic | 30.0% | |
| AGTTTATTGGATTGACATTG+TGG | - | chr3_4:41510498-41510517 | Msa0500870:intron | 30.0% | |
| CCATTGAATTGAAACGTGTT+GGG | + | chr3_4:41505317-41505336 | None:intergenic | 35.0% | |
| AGCTTACCGCTTAATAAACT+AGG | + | chr3_4:41506081-41506100 | None:intergenic | 35.0% | |
| TTTATTAAGCGGTAAGCTCT+TGG | - | chr3_4:41506083-41506102 | Msa0500870:intron | 35.0% | |
| ! | TGGAATGATTTGTAAGAAGC+TGG | - | chr3_4:41506103-41506122 | Msa0500870:intron | 35.0% |
| ! | GGAATGATTTGTAAGAAGCT+GGG | - | chr3_4:41506104-41506123 | Msa0500870:intron | 35.0% |
| GCACTCCAAGTTAATATTGA+AGG | + | chr3_4:41506687-41506706 | None:intergenic | 35.0% | |
| ATGGATAGAATGACTTTGGA+GGG | + | chr3_4:41506725-41506744 | None:intergenic | 35.0% | |
| CATCATGGATAGAATGACTT+TGG | + | chr3_4:41506729-41506748 | None:intergenic | 35.0% | |
| AAGTCATTCTATCCATGATG+AGG | - | chr3_4:41506729-41506748 | Msa0500870:intron | 35.0% | |
| AAAAGGCAACATCAAGTGAT+TGG | + | chr3_4:41507218-41507237 | None:intergenic | 35.0% | |
| !! | GATACCTTTTGAAGGTGAAA+AGG | + | chr3_4:41507235-41507254 | None:intergenic | 35.0% |
| TAGTTCCAAGATAAGCATCT+AGG | - | chr3_4:41507423-41507442 | Msa0500870:CDS | 35.0% | |
| AGTGATCACCTACTAACAAA+AGG | + | chr3_4:41507565-41507584 | None:intergenic | 35.0% | |
| CACACCATGAAACATATTAC+AGG | + | chr3_4:41508091-41508110 | None:intergenic | 35.0% | |
| GACAAAATACATGTCATAGC+AGG | + | chr3_4:41508144-41508163 | None:intergenic | 35.0% | |
| !! | GATTGCTAAAATGGTTTGCT+TGG | - | chr3_4:41508485-41508504 | Msa0500870:intron | 35.0% |
| !! | TAAAATGGTTTGCTTGGCTT+TGG | - | chr3_4:41508491-41508510 | Msa0500870:intron | 35.0% |
| AGTGTGAGAAATAGTTGGTT+AGG | + | chr3_4:41508518-41508537 | None:intergenic | 35.0% | |
| ! | AACCAACTATTTCTCACACT+CGG | - | chr3_4:41508518-41508537 | Msa0500870:intron | 35.0% |
| TGACGGCTAAGTTAGAATTA+GGG | + | chr3_4:41508586-41508605 | None:intergenic | 35.0% | |
| ATCTGATCAACATGTTGAAC+TGG | + | chr3_4:41508613-41508632 | None:intergenic | 35.0% | |
| AGTTCAACATGTTGATCAGA+TGG | - | chr3_4:41508612-41508631 | Msa0500870:intron | 35.0% | |
| TAGCTTCACCATCTTCAATT+CGG | - | chr3_4:41508671-41508690 | Msa0500870:intron | 35.0% | |
| TACATGTTGTACTTCCTTGA+TGG | - | chr3_4:41508810-41508829 | Msa0500870:intron | 35.0% | |
| TTAAGTTAACGACTCCATCA+AGG | + | chr3_4:41508827-41508846 | None:intergenic | 35.0% | |
| AGCAATTCAGTTGCATGTAT+TGG | - | chr3_4:41509055-41509074 | Msa0500870:intron | 35.0% | |
| GCAATTCAGTTGCATGTATT+GGG | - | chr3_4:41509056-41509075 | Msa0500870:intron | 35.0% | |
| CAATTCAGTTGCATGTATTG+GGG | - | chr3_4:41509057-41509076 | Msa0500870:intron | 35.0% | |
| !! | CAAAAGTATTCTCTCAAAGG+TGG | + | chr3_4:41509168-41509187 | None:intergenic | 35.0% |
| !! | CACCTTTGAGAGAATACTTT+TGG | - | chr3_4:41509166-41509185 | Msa0500870:intron | 35.0% |
| !! | CCTTTGAGAGAATACTTTTG+GGG | - | chr3_4:41509168-41509187 | Msa0500870:intron | 35.0% |
| GAATCACAAGAAACATGACT+TGG | + | chr3_4:41509845-41509864 | None:intergenic | 35.0% | |
| GCAAGTATTTCAGGGTAAAT+TGG | - | chr3_4:41510267-41510286 | Msa0500870:intron | 35.0% | |
| TCAAAAACGGATGTACTAAC+AGG | + | chr3_4:41510338-41510357 | None:intergenic | 35.0% | |
| GATCCTATGATGACTTATTG+AGG | - | chr3_4:41510408-41510427 | Msa0500870:intron | 35.0% | |
| CTACCTCAATAAGTCATCAT+AGG | + | chr3_4:41510414-41510433 | None:intergenic | 35.0% | |
| TATTGGATTGACATTGTGGA+TGG | - | chr3_4:41510502-41510521 | Msa0500870:intron | 35.0% | |
| TTGTATTCTTGAGACTCATG+AGG | - | chr3_4:41510544-41510563 | Msa0500870:intron | 35.0% | |
| !!! | TGCTGGGAATTTTTTACTAG+TGG | + | chr3_4:41510580-41510599 | None:intergenic | 35.0% |
| ! | TAGTTTGTCCTTAAACTCTG+AGG | - | chr3_4:41510630-41510649 | Msa0500870:CDS | 35.0% |
| AGTTTGTCCTTAAACTCTGA+GGG | - | chr3_4:41510631-41510650 | Msa0500870:CDS | 35.0% | |
| TAAGACCGTGATAATTCAAC+CGG | - | chr3_4:41510761-41510780 | Msa0500870:exon | 35.0% | |
| GTTGATGTGATGATAACAGC+TGG | - | chr3_4:41505265-41505284 | Msa0500870:three_prime_UTR | 40.0% | |
| TTGAATTGAAACGTGTTGGG+TGG | + | chr3_4:41505314-41505333 | None:intergenic | 40.0% | |
| CCCAACACGTTTCAATTCAA+TGG | - | chr3_4:41505314-41505333 | Msa0500870:three_prime_UTR | 40.0% | |
| GCCATTGAATTGAAACGTGT+TGG | + | chr3_4:41505318-41505337 | None:intergenic | 40.0% | |
| AGAAGGTGAAGAACAGAAAG+GGG | + | chr3_4:41505358-41505377 | None:intergenic | 40.0% | |
| GAGAAGGTGAAGAACAGAAA+GGG | + | chr3_4:41505359-41505378 | None:intergenic | 40.0% | |
| ATTGGAAGAAGTTGAAGCGA+AGG | + | chr3_4:41505463-41505482 | None:intergenic | 40.0% | |
| TTCCAAGCTTATCACTGCTT+TGG | - | chr3_4:41505524-41505543 | Msa0500870:three_prime_UTR | 40.0% | |
| TACCAAAGCAGTGATAAGCT+TGG | + | chr3_4:41505529-41505548 | None:intergenic | 40.0% | |
| ATGCTGTGACATTATCAGCT+TGG | - | chr3_4:41505858-41505877 | Msa0500870:intron | 40.0% | |
| !! | ATCAGCTTGGTTTGCAATTC+AGG | - | chr3_4:41505871-41505890 | Msa0500870:intron | 40.0% |
| CATAGACGCTGAAACTACTT+TGG | - | chr3_4:41505962-41505981 | Msa0500870:intron | 40.0% | |
| GTAATTCCAATGTCAAGTGC+AGG | - | chr3_4:41505984-41506003 | Msa0500870:intron | 40.0% | |
| ! | TGATTTGTAAGAAGCTGGGT+TGG | - | chr3_4:41506108-41506127 | Msa0500870:intron | 40.0% |
| GATTTGTAAGAAGCTGGGTT+GGG | - | chr3_4:41506109-41506128 | Msa0500870:intron | 40.0% | |
| GGTAAGGATTTAGGCTTCTT+TGG | - | chr3_4:41506424-41506443 | Msa0500870:intron | 40.0% | |
| ! | TGGATAGAATGACTTTGGAG+GGG | + | chr3_4:41506724-41506743 | None:intergenic | 40.0% |
| CATGGATAGAATGACTTTGG+AGG | + | chr3_4:41506726-41506745 | None:intergenic | 40.0% | |
| !! | AGGTACTGCAAGCATTTTCA+AGG | - | chr3_4:41507173-41507192 | Msa0500870:intron | 40.0% |
| ! | GTTGCCTTTTCACCTTCAAA+AGG | - | chr3_4:41507228-41507247 | Msa0500870:intron | 40.0% |
| CTTGAGTTACTCATCCATCA+TGG | + | chr3_4:41507329-41507348 | None:intergenic | 40.0% | |
| TCCAAGATAAGCATCTAGGT+AGG | - | chr3_4:41507427-41507446 | Msa0500870:CDS | 40.0% | |
| ACCTACCTAGATGCTTATCT+TGG | + | chr3_4:41507431-41507450 | None:intergenic | 40.0% | |
| ! | CTGTTACTTCTGTGAATCAG+TGG | - | chr3_4:41507483-41507502 | Msa0500870:intron | 40.0% |
| TGCAGAAGCAGGATACAAAA+TGG | + | chr3_4:41507752-41507771 | None:intergenic | 40.0% | |
| TTTGTATCCTGCTTCTGCAA+AGG | - | chr3_4:41507753-41507772 | Msa0500870:intron | 40.0% | |
| ! | GTCGTGGATTTGAAGTTACA+AGG | - | chr3_4:41507908-41507927 | Msa0500870:intron | 40.0% |
| GTGTGTCACATTATGCAGTT+TGG | - | chr3_4:41508166-41508185 | Msa0500870:CDS | 40.0% | |
| TGTCACATTATGCAGTTTGG+AGG | - | chr3_4:41508169-41508188 | Msa0500870:CDS | 40.0% | |
| ATAGGATTGACAAACCCTAC+CGG | - | chr3_4:41508373-41508392 | Msa0500870:CDS | 40.0% | |
| ! | TGTAGAAGTATATGCATGCC+CGG | + | chr3_4:41508395-41508414 | None:intergenic | 40.0% |
| TCTCACACTCGGACTATTTA+TGG | - | chr3_4:41508529-41508548 | Msa0500870:intron | 40.0% | |
| CTGACGGCTAAGTTAGAATT+AGG | + | chr3_4:41508587-41508606 | None:intergenic | 40.0% | |
| CTAATTCTAACTTAGCCGTC+AGG | - | chr3_4:41508585-41508604 | Msa0500870:intron | 40.0% | |
| TGAAGCTACTGTAACAACAG+GGG | + | chr3_4:41508659-41508678 | None:intergenic | 40.0% | |
| GTGAAGCTACTGTAACAACA+GGG | + | chr3_4:41508660-41508679 | None:intergenic | 40.0% | |
| TTGAAGGCAAAAGGGCAATA+AGG | + | chr3_4:41508703-41508722 | None:intergenic | 40.0% | |
| ! | CTTAACCTTTTCGTACCTGT+TGG | - | chr3_4:41508842-41508861 | Msa0500870:intron | 40.0% |
| CTTAACCAACAGGTACGAAA+AGG | + | chr3_4:41508850-41508869 | None:intergenic | 40.0% | |
| CATTAAGACGCTTAACCAAC+AGG | + | chr3_4:41508860-41508879 | None:intergenic | 40.0% | |
| AAGCGTCTTAATGACTCTTG+AGG | - | chr3_4:41508867-41508886 | Msa0500870:CDS | 40.0% | |
| GGATTTGTGATTACCCTTCA+AGG | + | chr3_4:41509147-41509166 | None:intergenic | 40.0% | |
| !! | CCCCAAAAGTATTCTCTCAA+AGG | + | chr3_4:41509171-41509190 | None:intergenic | 40.0% |
| AACTTGAGTCACTCCTATGT+GGG | + | chr3_4:41509353-41509372 | None:intergenic | 40.0% | |
| AAACTTGAGTCACTCCTATG+TGG | + | chr3_4:41509354-41509373 | None:intergenic | 40.0% | |
| !! | TCCATTGTTGTCTGTTTCTG+CGG | - | chr3_4:41509803-41509822 | Msa0500870:intron | 40.0% |
| ATCTTCTTTCTCCTGACAGA+TGG | - | chr3_4:41510360-41510379 | Msa0500870:intron | 40.0% | |
| TCTTCTTTCTCCTGACAGAT+GGG | - | chr3_4:41510361-41510380 | Msa0500870:intron | 40.0% | |
| CATAGGATCTCAATGCTTCA+AGG | + | chr3_4:41510397-41510416 | None:intergenic | 40.0% | |
| TTGGTAGGTATTCACATGCT+GGG | + | chr3_4:41510596-41510615 | None:intergenic | 40.0% | |
| ATTGGTAGGTATTCACATGC+TGG | + | chr3_4:41510597-41510616 | None:intergenic | 40.0% | |
| AACTAAGTGCTCGACTCAAT+TGG | + | chr3_4:41510615-41510634 | None:intergenic | 40.0% | |
| AAAAAAAAAGGCAGGAGGGG+AGG | - | chr3_4:41505243-41505262 | Msa0500870:three_prime_UTR | 45.0% | |
| ATGTGATGATAACAGCTGGC+TGG | - | chr3_4:41505269-41505288 | Msa0500870:three_prime_UTR | 45.0% | |
| TGATAACAGCTGGCTGGATT+CGG | - | chr3_4:41505275-41505294 | Msa0500870:three_prime_UTR | 45.0% | |
| GGAGAAGGTGAAGAACAGAA+AGG | + | chr3_4:41505360-41505379 | None:intergenic | 45.0% | |
| AGTTGAAGACAAGGAGGAGA+AGG | + | chr3_4:41505375-41505394 | None:intergenic | 45.0% | |
| CTCCTTGTCTTCAACTTCAC+CGG | - | chr3_4:41505379-41505398 | Msa0500870:three_prime_UTR | 45.0% | |
| GAGAAGAAAATGGATGCTGC+CGG | + | chr3_4:41505401-41505420 | None:intergenic | 45.0% | |
| AGAGCAGTGGGAGAAGAAAA+TGG | + | chr3_4:41505411-41505430 | None:intergenic | 45.0% | |
| GGTGAAAGTGGAGTTGGAAT+CGG | + | chr3_4:41505442-41505461 | None:intergenic | 45.0% | |
| AGTTGAAGCGAAGGTGAAAG+TGG | + | chr3_4:41505454-41505473 | None:intergenic | 45.0% | |
| CTAGGAAGCTTGTCGAAATC+AGG | + | chr3_4:41506063-41506082 | None:intergenic | 45.0% | |
| CGACATAGTGTGGAGAAACA+AGG | - | chr3_4:41506159-41506178 | Msa0500870:intron | 45.0% | |
| TAGAAAGACTGAACCAGCCT+CGG | + | chr3_4:41506394-41506413 | None:intergenic | 45.0% | |
| ATTGTTGTCCTTAGAGCTGC+TGG | - | chr3_4:41507117-41507136 | Msa0500870:intron | 45.0% | |
| TTGTTGTCCTTAGAGCTGCT+GGG | - | chr3_4:41507118-41507137 | Msa0500870:intron | 45.0% | |
| ! | AGAATAGGCGTTGTTGGATC+AGG | - | chr3_4:41507153-41507172 | Msa0500870:intron | 45.0% |
| GCAACTGGAGACATAAATGC+AGG | + | chr3_4:41507297-41507316 | None:intergenic | 45.0% | |
| GCAAAGGCTAGCAATGAGAT+TGG | - | chr3_4:41507769-41507788 | Msa0500870:intron | 45.0% | |
| CTTGAAAAGAAGGGGACACA+AGG | + | chr3_4:41507967-41507986 | None:intergenic | 45.0% | |
| TAGGATTGACAAACCCTACC+GGG | - | chr3_4:41508374-41508393 | Msa0500870:CDS | 45.0% | |
| AAGTATATGCATGCCCGGTA+GGG | + | chr3_4:41508390-41508409 | None:intergenic | 45.0% | |
| CGATCATAAGCTACTGATGC+TGG | + | chr3_4:41508418-41508437 | None:intergenic | 45.0% | |
| GTCCGAGTGTGAGAAATAGT+TGG | + | chr3_4:41508523-41508542 | None:intergenic | 45.0% | |
| CATGTTGAACTGGTACCTGA+CGG | + | chr3_4:41508603-41508622 | None:intergenic | 45.0% | |
| GGTGAAGCTACTGTAACAAC+AGG | + | chr3_4:41508661-41508680 | None:intergenic | 45.0% | |
| GGAACTCACCGAATTGAAGA+TGG | + | chr3_4:41508682-41508701 | None:intergenic | 45.0% | |
| ! | TTTTAACCTGCAACAGAGCC+TGG | - | chr3_4:41509005-41509024 | Msa0500870:intron | 45.0% |
| AGCCTGGAAGAATCTCCTTT+CGG | - | chr3_4:41509021-41509040 | Msa0500870:intron | 45.0% | |
| ATCCGAAAGGAGATTCTTCC+AGG | + | chr3_4:41509026-41509045 | None:intergenic | 45.0% | |
| TGCAACTGAATTGCTCCAGT+CGG | + | chr3_4:41509050-41509069 | None:intergenic | 45.0% | |
| GAAGCCTAATCTTCTTGCCA+TGG | + | chr3_4:41509095-41509114 | None:intergenic | 45.0% | |
| AGAGGACAAACTTCTCCATG+TGG | + | chr3_4:41509269-41509288 | None:intergenic | 45.0% | |
| ACTTGAGTCACTCCTATGTG+GGG | + | chr3_4:41509352-41509371 | None:intergenic | 45.0% | |
| AACAGACAACAATGGATGCG+AGG | + | chr3_4:41509799-41509818 | None:intergenic | 45.0% | |
| !! | CCATTGTTGTCTGTTTCTGC+GGG | - | chr3_4:41509804-41509823 | Msa0500870:intron | 45.0% |
| ATGCTTTCAACCCATCTGTC+AGG | + | chr3_4:41510374-41510393 | None:intergenic | 45.0% | |
| CTCTGCACATCATAGCAATC+TGG | - | chr3_4:41510436-41510455 | Msa0500870:intron | 45.0% | |
| AAGTGCTCGACTCAATTGGT+AGG | + | chr3_4:41510611-41510630 | None:intergenic | 45.0% | |
| CTACACTCCCTCAGAGTTTA+AGG | + | chr3_4:41510641-41510660 | None:intergenic | 45.0% | |
| ! | AAACTCTGAGGGAGTGTAGA+TGG | - | chr3_4:41510642-41510661 | Msa0500870:CDS | 45.0% |
| ! | AACTCTGAGGGAGTGTAGAT+GGG | - | chr3_4:41510643-41510662 | Msa0500870:CDS | 45.0% |
| GCTGACCGGTTGAATTATCA+CGG | + | chr3_4:41510769-41510788 | None:intergenic | 45.0% | |
| AACTATAGTTCGGAGCTGAC+CGG | + | chr3_4:41510783-41510802 | None:intergenic | 45.0% | |
| !!! | GTTTTAATTATATTATTTTA+GGG | + | chr3_4:41505838-41505857 | None:intergenic | 5.0% |
| !!! | TGTTTTAATTATATTATTTT+AGG | + | chr3_4:41505839-41505858 | None:intergenic | 5.0% |
| CGGTGAAGTTGAAGACAAGG+AGG | + | chr3_4:41505381-41505400 | None:intergenic | 50.0% | |
| TGCCGGTGAAGTTGAAGACA+AGG | + | chr3_4:41505384-41505403 | None:intergenic | 50.0% | |
| GAAAGTGGAGTTGGAATCGG+TGG | + | chr3_4:41505439-41505458 | None:intergenic | 50.0% | |
| AGCGAAGGTGAAAGTGGAGT+TGG | + | chr3_4:41505448-41505467 | None:intergenic | 50.0% | |
| ! | GACGACTTTTGGCGTTGCAT+TGG | + | chr3_4:41505481-41505500 | None:intergenic | 50.0% |
| !! | TCTCTGGTGACGACGACTTT+TGG | + | chr3_4:41505492-41505511 | None:intergenic | 50.0% |
| GGAATTCTTGCCACGTTCTC+TGG | + | chr3_4:41505508-41505527 | None:intergenic | 50.0% | |
| CCTCGTAGATGCTCAATGAG+CGG | + | chr3_4:41506039-41506058 | None:intergenic | 50.0% | |
| ! | CTGGGTTGGGTTCCTTTATG+TGG | - | chr3_4:41506122-41506141 | Msa0500870:intron | 50.0% |
| AGAAAGACTGAACCAGCCTC+GGG | + | chr3_4:41506393-41506412 | None:intergenic | 50.0% | |
| ! | GGCTGGTTCAGTCTTTCTAG+AGG | - | chr3_4:41506395-41506414 | Msa0500870:intron | 50.0% |
| ! | GTTCAGTCTTTCTAGAGGCG+TGG | - | chr3_4:41506400-41506419 | Msa0500870:intron | 50.0% |
| ! | TTTCTAGAGGCGTGGAGGTA+AGG | - | chr3_4:41506408-41506427 | Msa0500870:intron | 50.0% |
| AGGCGTGGAGGTAAGGATTT+AGG | - | chr3_4:41506415-41506434 | Msa0500870:intron | 50.0% | |
| ACAACGCCTATTCTGACACG+AGG | + | chr3_4:41507147-41507166 | None:intergenic | 50.0% | |
| ! | CGTGTCAGAATAGGCGTTGT+TGG | - | chr3_4:41507147-41507166 | Msa0500870:intron | 50.0% |
| ! | TCATGGTGAAGAAGCGCAAC+TGG | + | chr3_4:41507312-41507331 | None:intergenic | 50.0% |
| GTTGCGCTTCTTCACCATGA+TGG | - | chr3_4:41507312-41507331 | Msa0500870:intron | 50.0% | |
| GCATCTAGGTAGGTGAGAGA+AGG | - | chr3_4:41507437-41507456 | Msa0500870:CDS | 50.0% | |
| !! | TTGCTAGCCTTTGCAGAAGC+AGG | + | chr3_4:41507763-41507782 | None:intergenic | 50.0% |
| GAAGTATATGCATGCCCGGT+AGG | + | chr3_4:41508391-41508410 | None:intergenic | 50.0% | |
| ATTCTTCCAGGCTCTGTTGC+AGG | + | chr3_4:41509014-41509033 | None:intergenic | 50.0% | |
| ATCTCCTTTCGGATTCCGAC+TGG | - | chr3_4:41509032-41509051 | Msa0500870:intron | 50.0% | |
| GCTGCCATGGCAAGAAGATT+AGG | - | chr3_4:41509088-41509107 | Msa0500870:intron | 50.0% | |
| TGTATACCACCCAACACGAC+CGG | - | chr3_4:41509120-41509139 | Msa0500870:intron | 50.0% | |
| TGTGATTACCCTTCAAGGCC+CGG | + | chr3_4:41509142-41509161 | None:intergenic | 50.0% | |
| !! | GCTAAAGAGTGTTCACCGTC+TGG | - | chr3_4:41509243-41509262 | Msa0500870:intron | 50.0% |
| AACTTCTCCATGTGGCCAGA+CGG | + | chr3_4:41509261-41509280 | None:intergenic | 50.0% | |
| CCCGCAGAAACAGACAACAA+TGG | + | chr3_4:41509807-41509826 | None:intergenic | 50.0% | |
| AGTGGAGTTGGAATCGGTGG+CGG | + | chr3_4:41505436-41505455 | None:intergenic | 55.0% | |
| GCTTCGCCTGCACTTGACAT+TGG | + | chr3_4:41505993-41506012 | None:intergenic | 55.0% | |
| CCGCTCATTGAGCATCTACG+AGG | - | chr3_4:41506036-41506055 | Msa0500870:intron | 55.0% | |
| GGTTGTCATCACTTCTCCCG+AGG | - | chr3_4:41506374-41506393 | Msa0500870:intron | 55.0% | |
| ! | CAGTCTTTCTAGAGGCGTGG+AGG | - | chr3_4:41506403-41506422 | Msa0500870:intron | 55.0% |
| ! | ACTTTGGAGGGGTGCATGCT+TGG | + | chr3_4:41506713-41506732 | None:intergenic | 55.0% |
| GGGATGCCTCGTGTCAGAAT+AGG | - | chr3_4:41507138-41507157 | Msa0500870:intron | 55.0% | |
| CGACTTGAAAGCCCTTCCTC+TGG | + | chr3_4:41507892-41507911 | None:intergenic | 55.0% | |
| ! | GAGGAAGGGCTTTCAAGTCG+TGG | - | chr3_4:41507892-41507911 | Msa0500870:intron | 55.0% |
| TGCTCCAGTCGGAATCCGAA+AGG | + | chr3_4:41509039-41509058 | None:intergenic | 55.0% | |
| GTATACCACCCAACACGACC+GGG | - | chr3_4:41509121-41509140 | Msa0500870:intron | 55.0% | |
| ATTGCAGGCTCACCCCACAT+AGG | - | chr3_4:41509337-41509356 | Msa0500870:intron | 55.0% | |
| GTCGTCGTCACCAGAGAACG+TGG | - | chr3_4:41505495-41505514 | Msa0500870:three_prime_UTR | 60.0% | |
| GTCATCACTTCTCCCGAGGC+TGG | - | chr3_4:41506378-41506397 | Msa0500870:intron | 60.0% | |
| ! | GAGGCATCCCAGCAGCTCTA+AGG | + | chr3_4:41507128-41507147 | None:intergenic | 60.0% |
| TGGGGAGACAACTGCTGCCA+TGG | - | chr3_4:41509075-41509094 | Msa0500870:intron | 60.0% | |
| CTTCAAGGCCCGGTCGTGTT+GGG | + | chr3_4:41509132-41509151 | None:intergenic | 60.0% | |
| CAACACGACCGGGCCTTGAA+GGG | - | chr3_4:41509131-41509150 | Msa0500870:intron | 60.0% | |
| GTGTTCACCGTCTGGCCACA+TGG | - | chr3_4:41509251-41509270 | Msa0500870:intron | 60.0% | |
| GCTGGCTGGATTCGGACAGC+AGG | - | chr3_4:41505283-41505302 | Msa0500870:three_prime_UTR | 65.0% | |
| !! | TCGGTGGCGGAGAGAGCAGT+GGG | + | chr3_4:41505423-41505442 | None:intergenic | 65.0% |
| !! | ATCGGTGGCGGAGAGAGCAG+TGG | + | chr3_4:41505424-41505443 | None:intergenic | 65.0% |
| CCTTCAAGGCCCGGTCGTGT+TGG | + | chr3_4:41509133-41509152 | None:intergenic | 65.0% | |
| CCAACACGACCGGGCCTTGA+AGG | - | chr3_4:41509130-41509149 | Msa0500870:intron | 65.0% | |
| CAAGGCCCGGTCGTGTTGGG+TGG | + | chr3_4:41509129-41509148 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41505229 | 41510866 | 41505229 | ID=Msa0500870;Name=Msa0500870 |
| chr3_4 | mRNA | 41505229 | 41510866 | 41505229 | ID=Msa0500870-mRNA-1;Parent=Msa0500870;Name=Msa0500870-mRNA-1;_AED=0.09;_eAED=0.09;_QI=104|1|1|1|1|1|9|433|302 |
| chr3_4 | exon | 41505229 | 41505716 | 41505229 | ID=Msa0500870-mRNA-1:exon:8704;Parent=Msa0500870-mRNA-1 |
| chr3_4 | exon | 41506943 | 41507074 | 41506943 | ID=Msa0500870-mRNA-1:exon:8703;Parent=Msa0500870-mRNA-1 |
| chr3_4 | exon | 41507403 | 41507488 | 41507403 | ID=Msa0500870-mRNA-1:exon:8702;Parent=Msa0500870-mRNA-1 |
| chr3_4 | exon | 41508147 | 41508202 | 41508147 | ID=Msa0500870-mRNA-1:exon:8701;Parent=Msa0500870-mRNA-1 |
| chr3_4 | exon | 41508305 | 41508397 | 41508305 | ID=Msa0500870-mRNA-1:exon:8700;Parent=Msa0500870-mRNA-1 |
| chr3_4 | exon | 41508846 | 41508964 | 41508846 | ID=Msa0500870-mRNA-1:exon:8699;Parent=Msa0500870-mRNA-1 |
| chr3_4 | exon | 41509671 | 41509737 | 41509671 | ID=Msa0500870-mRNA-1:exon:8698;Parent=Msa0500870-mRNA-1 |
| chr3_4 | exon | 41510002 | 41510089 | 41510002 | ID=Msa0500870-mRNA-1:exon:8697;Parent=Msa0500870-mRNA-1 |
| chr3_4 | exon | 41510550 | 41510866 | 41510550 | ID=Msa0500870-mRNA-1:exon:8696;Parent=Msa0500870-mRNA-1 |
| chr3_4 | five_prime_UTR | 41510763 | 41510866 | 41510763 | ID=Msa0500870-mRNA-1:five_prime_utr;Parent=Msa0500870-mRNA-1 |
| chr3_4 | CDS | 41510550 | 41510762 | 41510550 | ID=Msa0500870-mRNA-1:cds;Parent=Msa0500870-mRNA-1 |
| chr3_4 | CDS | 41510002 | 41510089 | 41510002 | ID=Msa0500870-mRNA-1:cds;Parent=Msa0500870-mRNA-1 |
| chr3_4 | CDS | 41509671 | 41509737 | 41509671 | ID=Msa0500870-mRNA-1:cds;Parent=Msa0500870-mRNA-1 |
| chr3_4 | CDS | 41508846 | 41508964 | 41508846 | ID=Msa0500870-mRNA-1:cds;Parent=Msa0500870-mRNA-1 |
| chr3_4 | CDS | 41508305 | 41508397 | 41508305 | ID=Msa0500870-mRNA-1:cds;Parent=Msa0500870-mRNA-1 |
| chr3_4 | CDS | 41508147 | 41508202 | 41508147 | ID=Msa0500870-mRNA-1:cds;Parent=Msa0500870-mRNA-1 |
| chr3_4 | CDS | 41507403 | 41507488 | 41507403 | ID=Msa0500870-mRNA-1:cds;Parent=Msa0500870-mRNA-1 |
| chr3_4 | CDS | 41506943 | 41507074 | 41506943 | ID=Msa0500870-mRNA-1:cds;Parent=Msa0500870-mRNA-1 |
| chr3_4 | CDS | 41505662 | 41505716 | 41505662 | ID=Msa0500870-mRNA-1:cds;Parent=Msa0500870-mRNA-1 |
| chr3_4 | three_prime_UTR | 41505229 | 41505661 | 41505229 | ID=Msa0500870-mRNA-1:three_prime_utr;Parent=Msa0500870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
