AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430380 MtrunA17_Chr3g0141401 98.730 315 4 0 1 315 1 315 0.0 636
Msa0430380 MtrunA17_Chr1g0154651 47.284 313 99 7 1 313 1 247 5.54e-81 246
Msa0430380 MtrunA17_Chr5g0403631 55.215 326 122 8 8 313 2 323 1.42e-75 234
Msa0430380 MtrunA17_Chr2g0315211 43.452 336 138 15 12 312 3 321 1.69e-34 128
Msa0430380 MtrunA17_Chr2g0315201 40.950 337 138 10 12 312 3 314 3.00e-31 119
Msa0430380 MtrunA17_Chr5g0408851 58.929 56 23 0 26 81 61 116 6.30e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430380 AT1G75080.2 65.094 318 88 10 14 313 22 334 1.25e-110 325
Msa0430380 AT1G75080.1 65.094 318 88 10 14 313 22 334 1.25e-110 325
Msa0430380 AT1G19350.3 64.375 320 91 9 14 315 43 357 1.17e-109 323
Msa0430380 AT1G19350.5 64.375 320 91 9 14 315 21 335 1.20e-109 322
Msa0430380 AT1G19350.1 64.375 320 91 9 14 315 21 335 1.20e-109 322
Msa0430380 AT1G19350.6 64.375 320 91 9 14 315 21 335 1.20e-109 322
Msa0430380 AT1G19350.4 64.375 320 91 9 14 315 21 335 1.20e-109 322
Msa0430380 AT3G50750.1 53.698 311 99 8 2 310 3 270 1.60e-71 223
Msa0430380 AT4G36780.1 59.296 199 74 3 15 209 16 211 3.16e-45 155
Msa0430380 AT1G78700.1 40.057 352 125 13 12 310 3 321 4.44e-38 138
Msa0430380 AT4G18890.1 41.401 314 137 13 12 312 3 282 1.20e-28 112
Msa0430380 AT2G45880.1 45.455 88 48 0 1 88 55 142 4.28e-15 76.3
Msa0430380 AT5G45300.2 57.143 56 24 0 26 81 97 152 5.71e-13 70.1
Msa0430380 AT5G45300.3 57.143 56 24 0 26 81 111 166 5.72e-13 70.1
Msa0430380 AT5G45300.1 57.143 56 24 0 26 81 97 152 5.72e-13 70.1

Find 130 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGGTCAAGCCTTGGGTT+GGG 0.244939 3_2:+82188505 Msa0430380:CDS
TAATAATCCTTTAAAATCTA+TGG 0.260043 3_2:+82188800 Msa0430380:three_prime_UTR
TTATGCTGCTCATTAATTAC+AGG 0.267539 3_2:-82188426 None:intergenic
CAAAGATTTACGCGGGATTA+AGG 0.278250 3_2:+82186954 Msa0430380:CDS
TGAAGTGGGCTTGGATGATT+TGG 0.316017 3_2:+82188539 Msa0430380:CDS
AGGATTTCAGAGCCAGAGTT+TGG 0.317045 3_2:+82188480 Msa0430380:CDS
CCATGTTGGAATCATGGGTT+TGG 0.326849 3_2:-82188187 None:intergenic
CATGTTGGAATCATGGGTTT+GGG 0.346172 3_2:-82188186 None:intergenic
ACAAGAACAACAGTAGTATA+AGG 0.369884 3_2:+82186676 Msa0430380:five_prime_UTR
AAGAGAATAAATGAGAGTTC+TGG 0.370557 3_2:-82188662 None:intergenic
TCATTGTTATCACAGTGTTT+TGG 0.378019 3_2:-82186998 None:intergenic
GAATCAATTGCCAAAGCATC+AGG 0.379878 3_2:+82188210 Msa0430380:CDS
AGTTAATGAAGACTAGTATA+TGG 0.383852 3_2:+82188591 Msa0430380:exon
GTGCAGGTCAAGCCTTGGGT+TGG 0.384192 3_2:+82188504 Msa0430380:CDS
GGATTTCAGAGCCAGAGTTT+GGG 0.385062 3_2:+82188481 Msa0430380:CDS
TTGGAGCTTACTCTTGGAAA+TGG 0.386518 3_2:+82188558 Msa0430380:CDS
TGGGGTGCAGGTCAAGCCTT+GGG 0.386786 3_2:+82188500 Msa0430380:CDS
TGATTCCCATGTTGGAATCA+TGG 0.387349 3_2:-82188193 None:intergenic
TTGGGGTGCAGGTCAAGCCT+TGG 0.395856 3_2:+82188499 Msa0430380:CDS
AGAGCCAGAGTTTGGGGTGC+AGG 0.400385 3_2:+82188488 Msa0430380:CDS
GAATAGTAGGTGGTGTATAA+AGG 0.410535 3_2:-82188293 None:intergenic
GATGATTTGGAGCTTACTCT+TGG 0.411343 3_2:+82188552 Msa0430380:CDS
GGCGCAGAAGCTGCGAAGAA+AGG 0.412024 3_2:-82188249 None:intergenic
GTATCAGACTCATCACATTC+AGG 0.421362 3_2:-82188315 None:intergenic
CTTGAAGTTGGTGATGAGAT+AGG 0.423563 3_2:-82188159 None:intergenic
GGGAACATGCTGCGAGCATA+TGG 0.428278 3_2:-82188084 None:intergenic
AAGGATTCATGAAGTGGGCT+TGG 0.442178 3_2:+82188530 Msa0430380:CDS
GCAGGTCAAGCCTTGGGTTG+GGG 0.445549 3_2:+82188506 Msa0430380:CDS
GAAACACCAGGCGACGGTGC+AGG 0.453828 3_2:+82187904 Msa0430380:CDS
GGAGGGAGAGAGAGAACAAC+AGG 0.454864 3_2:+82186900 Msa0430380:CDS
GAAGGATGTCCCTGATGCTT+TGG 0.455024 3_2:-82188220 None:intergenic
CTCTTTGTGCTGAAGCTGGT+TGG 0.455901 3_2:+82187032 Msa0430380:CDS
TAGGTGGTGTATAAAGGTTC+CGG 0.456174 3_2:-82188287 None:intergenic
TCATCACATTCAGGAATAGT+AGG 0.457941 3_2:-82188306 None:intergenic
ATTTCCGAGCCCGTCTCGTA+TGG 0.458323 3_2:+82188032 Msa0430380:CDS
AAGAGGAAGATGGGCTAACT+TGG 0.459342 3_2:-82188008 None:intergenic
TTACGCGGGATTAAGGTCTC+AGG 0.461228 3_2:+82186961 Msa0430380:CDS
AAATTTCCTGCACCGTCGCC+TGG 0.461316 3_2:-82187910 None:intergenic
AAAGCTCTTTGTGCTGAAGC+TGG 0.466712 3_2:+82187028 Msa0430380:CDS
CAAAGGTGGGAGAGACATGT+TGG 0.476794 3_2:-82188106 None:intergenic
TGAACACTGAACAGGGATCA+AGG 0.477060 3_2:+82187878 Msa0430380:intron
GATTCCCATGTTGGAATCAT+GGG 0.479782 3_2:-82188192 None:intergenic
GATACTTCTACTGTTGAGTC+TGG 0.480255 3_2:+82188333 Msa0430380:CDS
TAGCAGAAGCTGCAAAGGCT+TGG 0.482094 3_2:-82188371 None:intergenic
TCAAGCCTTGGGTTGGGGAA+AGG 0.483086 3_2:+82188511 Msa0430380:CDS
GCATCCATACGAGACGGGCT+CGG 0.486953 3_2:-82188036 None:intergenic
TGGTAGGAAGGGATTGGACT+TGG 0.487033 3_2:-82187988 None:intergenic
AATGATGATGAAAGAGGACT+TGG 0.489656 3_2:-82187964 None:intergenic
TTGGCAATTGATTCCCATGT+TGG 0.490224 3_2:-82188201 None:intergenic
CTGGACGGAACTCTTATTGT+GGG 0.491424 3_2:-82188826 None:intergenic
ATCTCCTGCATTCTGTTATG+AGG 0.491673 3_2:-82188456 None:intergenic
TTGACCTGCACCCCAAACTC+TGG 0.493982 3_2:-82188492 None:intergenic
GCGCAGAAGCTGCGAAGAAA+GGG 0.494226 3_2:-82188248 None:intergenic
AAAGGTGGGAGAGACATGTT+GGG 0.494510 3_2:-82188105 None:intergenic
GGTTTGGGATTTCTTGAAGT+TGG 0.496117 3_2:-82188171 None:intergenic
AGGCTTGGAAATTCAACCAT+TGG 0.499150 3_2:-82188356 None:intergenic
GGTTTCATAAAGTTCAATGT+AGG 0.500604 3_2:-82188405 None:intergenic
CTCGGAAATGAAGAGGAAGA+TGG 0.501823 3_2:-82188018 None:intergenic
GATGGGCTAACTTGGTAGGA+AGG 0.510153 3_2:-82188000 None:intergenic
TAAAAGTACCCTGCGATAAG+TGG 0.514725 3_2:-82187074 None:intergenic
TGCGAAGAAAGGGTGATTGA+AGG 0.517777 3_2:-82188238 None:intergenic
ACTCTCATTACAAGCTTACC+TGG 0.519328 3_2:-82188845 None:intergenic
GATGAGATAGGTGGCGTCAC+AGG 0.527145 3_2:-82188147 None:intergenic
CTAACTTGGTAGGAAGGGAT+TGG 0.532618 3_2:-82187994 None:intergenic
CCTGGACGGAACTCTTATTG+TGG 0.532874 3_2:-82188827 None:intergenic
TGATTTAGCAGAAGCTGCAA+AGG 0.535526 3_2:-82188376 None:intergenic
TGTTTGCATCCATACGAGAC+GGG 0.538446 3_2:-82188041 None:intergenic
GGTTGGATTGTTGAAGAAGA+TGG 0.538632 3_2:+82187049 Msa0430380:CDS
CCACAATAAGAGTTCCGTCC+AGG 0.539358 3_2:+82188827 Msa0430380:three_prime_UTR
CTGTTTGATATTCTCAAAGG+TGG 0.543504 3_2:-82188120 None:intergenic
TTCCGGTGGGATGGACTAGT+AGG 0.544807 3_2:-82188270 None:intergenic
GTATAAAGGTTCCGGTGGGA+TGG 0.546631 3_2:-82188279 None:intergenic
TGAATCCTTTCCCCAACCCA+AGG 0.565111 3_2:-82188516 None:intergenic
AAGATGGCACCACTTATCGC+AGG 0.566281 3_2:+82187065 Msa0430380:CDS
GGATCAAGGGCAGAAACACC+AGG 0.568579 3_2:+82187892 Msa0430380:CDS
TCGTCGGAAGCCGTCGTGGA+GGG 0.569962 3_2:+82186883 Msa0430380:CDS
GGAAGATGGGCTAACTTGGT+AGG 0.570068 3_2:-82188004 None:intergenic
AACAACAACGAGGAGAGGAC+AGG 0.573582 3_2:+82186735 Msa0430380:five_prime_UTR
ATGGGCTAACTTGGTAGGAA+GGG 0.578259 3_2:-82187999 None:intergenic
CCAAACCCATGATTCCAACA+TGG 0.578571 3_2:+82188187 Msa0430380:CDS
AGAGGTGCAGCAGTGTGGAA+TGG 0.578750 3_2:+82186826 Msa0430380:exon
TACGCGGGATTAAGGTCTCA+GGG 0.579295 3_2:+82186962 Msa0430380:CDS
CTACTGTTGAGTCTGGCCAA+TGG 0.579821 3_2:+82188340 Msa0430380:CDS
TTGTTTGCATCCATACGAGA+CGG 0.580413 3_2:-82188042 None:intergenic
CTTGGAAATGATGATGAAAG+AGG 0.585676 3_2:-82187970 None:intergenic
TATACTAGTCTTCATTAACT+AGG 0.587526 3_2:-82188588 None:intergenic
TCGGAAATGAAGAGGAAGAT+GGG 0.591259 3_2:-82188017 None:intergenic
GAACACTGAACAGGGATCAA+GGG 0.592233 3_2:+82187879 Msa0430380:intron
GCTGCCTCATAACAGAATGC+AGG 0.597111 3_2:+82188452 Msa0430380:CDS
GATTTCAGAGCCAGAGTTTG+GGG 0.597331 3_2:+82188482 Msa0430380:CDS
GAGACGGAGGAGAGCTATAG+CGG 0.598645 3_2:+82186931 Msa0430380:CDS
GTGGTGTATAAAGGTTCCGG+TGG 0.599334 3_2:-82188284 None:intergenic
TGGGGAAAGGATTCATGAAG+TGG 0.599526 3_2:+82188524 Msa0430380:CDS
GCGCTGTTTGATATTCTCAA+AGG 0.602416 3_2:-82188123 None:intergenic
TTGTAATGAGAGTGTAATGA+CGG 0.603568 3_2:+82188855 Msa0430380:three_prime_UTR
CAGTGTGGAATGGCTTCTGA+CGG 0.605971 3_2:+82186836 Msa0430380:exon
GTCGTCGGAAGCCGTCGTGG+AGG 0.608313 3_2:+82186882 Msa0430380:CDS
CGCCTACTAGTCCATCCCAC+CGG 0.608831 3_2:+82188268 Msa0430380:CDS
TGTTTGATATTCTCAAAGGT+GGG 0.611100 3_2:-82188119 None:intergenic
ACAACAGGAGGAGAGAGAGA+CGG 0.611729 3_2:+82186915 Msa0430380:CDS
ATAACAGAATGCAGGAGATG+AGG 0.612424 3_2:+82188460 Msa0430380:CDS
AGGGCAGAAACACCAGGCGA+CGG 0.612624 3_2:+82187898 Msa0430380:CDS
TTCTCTCTCTCCCTCCACGA+CGG 0.613396 3_2:-82186893 None:intergenic
CAAACCCATGATTCCAACAT+GGG 0.619565 3_2:+82188188 Msa0430380:CDS
AGACGGGCTCGGAAATGAAG+AGG 0.620195 3_2:-82188025 None:intergenic
AATTGAACAACAACGAGGAG+AGG 0.620364 3_2:+82186730 Msa0430380:five_prime_UTR
CAGCGGCGAATTCAAGTCGT+CGG 0.624367 3_2:+82186867 Msa0430380:CDS
GCTTACTCTTGGAAATGGAA+AGG 0.624748 3_2:+82188563 Msa0430380:CDS
CAAGTCGTCGGAAGCCGTCG+TGG 0.626877 3_2:+82186879 Msa0430380:CDS
GGGGAAAGGATTCATGAAGT+GGG 0.628370 3_2:+82188525 Msa0430380:CDS
TCATTACAAGCTTACCTGGA+CGG 0.629756 3_2:-82188841 None:intergenic
TCAGCTACGACGCAGTTCAG+AGG 0.629961 3_2:+82186808 Msa0430380:five_prime_UTR
ACAGGAGGAGAGAGAGACGG+AGG 0.634956 3_2:+82186918 Msa0430380:CDS
GGGAGAGAGAGAACAACAGG+AGG 0.636818 3_2:+82186903 Msa0430380:CDS
ATAGCGGCAAAGATTTACGC+GGG 0.642415 3_2:+82186947 Msa0430380:CDS
AATCAATTGCCAAAGCATCA+GGG 0.645925 3_2:+82188211 Msa0430380:CDS
TGTAATGACGGAATGACCCA+TGG 0.646414 3_2:+82188867 Msa0430380:three_prime_UTR
TCACATTCAGGAATAGTAGG+TGG 0.669687 3_2:-82188303 None:intergenic
AAAACACTGTGATAACAATG+AGG 0.672851 3_2:+82187000 Msa0430380:CDS
AGATGGCACCACTTATCGCA+GGG 0.680637 3_2:+82187066 Msa0430380:CDS
TGGTGTATAAAGGTTCCGGT+GGG 0.684999 3_2:-82188283 None:intergenic
AAATGAACTCACGAGGAATG+CGG 0.687204 3_2:-82186760 None:intergenic
TTCTGACGGAGCAACTTCAG+CGG 0.689590 3_2:+82186850 Msa0430380:CDS
GAGTAGTAAATGAACTCACG+AGG 0.700575 3_2:-82186767 None:intergenic
TATAGCGGCAAAGATTTACG+CGG 0.709001 3_2:+82186946 Msa0430380:CDS
AGTTCAGAGGTGCAGCAGTG+TGG 0.709625 3_2:+82186821 Msa0430380:five_prime_UTR
ACGCGGGATTAAGGTCTCAG+GGG 0.722971 3_2:+82186963 Msa0430380:CDS
AAGGTGGGAGAGACATGTTG+GGG 0.734444 3_2:-82188104 None:intergenic
GAAGTTGGTGATGAGATAGG+TGG 0.736539 3_2:-82188156 None:intergenic
TCATAAATTGAACAACAACG+AGG 0.799135 3_2:+82186725 Msa0430380:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTGAAGAAAGA+TGG - chr3_2:82187521-82187540 None:intergenic 15.0%
!! ATAGTAAAAATAAGTTCATT+AGG - chr3_2:82187735-82187754 None:intergenic 15.0%
!! TTGAATAAACAACTTAATTA+AGG - chr3_2:82187802-82187821 None:intergenic 15.0%
!!! TAATAATCCTTTAAAATCTA+TGG + chr3_2:82188800-82188819 Msa0430380:three_prime_UTR 15.0%
!!! TTTATTTTTTTGAAGAAAGA+TGG - chr3_2:82187521-82187540 None:intergenic 15.0%
!! ATAGTAAAAATAAGTTCATT+AGG - chr3_2:82187735-82187754 None:intergenic 15.0%
!! TTGAATAAACAACTTAATTA+AGG - chr3_2:82187802-82187821 None:intergenic 15.0%
!!! TAATAATCCTTTAAAATCTA+TGG + chr3_2:82188800-82188819 Msa0430380:three_prime_UTR 15.0%
!!! AGTTTTGATGAAATTTTGTT+TGG + chr3_2:82187227-82187246 Msa0430380:intron 20.0%
!! AATCTGAGTCAAATTAATTT+CGG + chr3_2:82187291-82187310 Msa0430380:intron 20.0%
!!! AGTTTTGATGAAATTTTGTT+TGG + chr3_2:82187227-82187246 Msa0430380:intron 20.0%
!! AATCTGAGTCAAATTAATTT+CGG + chr3_2:82187291-82187310 Msa0430380:intron 20.0%
!!! TGATGAAATTTTGTTTGGTT+TGG + chr3_2:82187232-82187251 Msa0430380:intron 25.0%
! AACTAGTAGTTGATTAATTG+AGG - chr3_2:82187328-82187347 None:intergenic 25.0%
! TTGAACAATCTAATCTGATT+TGG + chr3_2:82187590-82187609 Msa0430380:intron 25.0%
! TGAACAATCTAATCTGATTT+GGG + chr3_2:82187591-82187610 Msa0430380:intron 25.0%
!! TATCTGATAAGAATCTGTTT+TGG + chr3_2:82187831-82187850 Msa0430380:intron 25.0%
!!! TTGGATTTTGAGATGAAAAT+GGG - chr3_2:82187948-82187967 None:intergenic 25.0%
!!! TATACTAGTCTTCATTAACT+AGG - chr3_2:82188591-82188610 None:intergenic 25.0%
! AGTTAATGAAGACTAGTATA+TGG + chr3_2:82188591-82188610 Msa0430380:exon 25.0%
!!! TGATGAAATTTTGTTTGGTT+TGG + chr3_2:82187232-82187251 Msa0430380:intron 25.0%
! AACTAGTAGTTGATTAATTG+AGG - chr3_2:82187328-82187347 None:intergenic 25.0%
! TTGAACAATCTAATCTGATT+TGG + chr3_2:82187590-82187609 Msa0430380:intron 25.0%
! TGAACAATCTAATCTGATTT+GGG + chr3_2:82187591-82187610 Msa0430380:intron 25.0%
!! TATCTGATAAGAATCTGTTT+TGG + chr3_2:82187831-82187850 Msa0430380:intron 25.0%
!!! TTGGATTTTGAGATGAAAAT+GGG - chr3_2:82187948-82187967 None:intergenic 25.0%
!!! TATACTAGTCTTCATTAACT+AGG - chr3_2:82188591-82188610 None:intergenic 25.0%
! AGTTAATGAAGACTAGTATA+TGG + chr3_2:82188591-82188610 Msa0430380:exon 25.0%
!!! GTTCTTGTTTTTGTTTGGTT+TGG - chr3_2:82186664-82186683 None:intergenic 30.0%
!!! CTGTTGTTCTTGTTTTTGTT+TGG - chr3_2:82186669-82186688 None:intergenic 30.0%
ACAAGAACAACAGTAGTATA+AGG + chr3_2:82186676-82186695 Msa0430380:five_prime_UTR 30.0%
TCATAAATTGAACAACAACG+AGG + chr3_2:82186725-82186744 Msa0430380:five_prime_UTR 30.0%
! TCATTGTTATCACAGTGTTT+TGG - chr3_2:82187001-82187020 None:intergenic 30.0%
AAAACACTGTGATAACAATG+AGG + chr3_2:82187000-82187019 Msa0430380:CDS 30.0%
TCCAAAAAAGAAAAGTGAGA+GGG - chr3_2:82187103-82187122 None:intergenic 30.0%
GATTCAAATCTTACTGCAAT+TGG + chr3_2:82187182-82187201 Msa0430380:intron 30.0%
TTCCTTTGACTGAAAATACA+AGG - chr3_2:82187265-82187284 None:intergenic 30.0%
! ATTTTCCAATGTGGCATAAT+TGG - chr3_2:82187452-82187471 None:intergenic 30.0%
TGATAGCATTTCATTTCACA+CGG - chr3_2:82187478-82187497 None:intergenic 30.0%
AAACAATGGGTAATCCTAAT+TGG + chr3_2:82187554-82187573 Msa0430380:intron 30.0%
!!! CTTGGATTTTGAGATGAAAA+TGG - chr3_2:82187949-82187968 None:intergenic 30.0%
TGTTTGATATTCTCAAAGGT+GGG - chr3_2:82188122-82188141 None:intergenic 30.0%
GGTTTCATAAAGTTCAATGT+AGG - chr3_2:82188408-82188427 None:intergenic 30.0%
TTATGCTGCTCATTAATTAC+AGG - chr3_2:82188429-82188448 None:intergenic 30.0%
ATAAAAATGCTCATAGCATC+TGG - chr3_2:82188623-82188642 None:intergenic 30.0%
AAGAGAATAAATGAGAGTTC+TGG - chr3_2:82188665-82188684 None:intergenic 30.0%
! TGGGTATCCATAGATTTTAA+AGG - chr3_2:82188810-82188829 None:intergenic 30.0%
! TTGTAATGAGAGTGTAATGA+CGG + chr3_2:82188855-82188874 Msa0430380:three_prime_UTR 30.0%
!!! GTTCTTGTTTTTGTTTGGTT+TGG - chr3_2:82186664-82186683 None:intergenic 30.0%
!!! CTGTTGTTCTTGTTTTTGTT+TGG - chr3_2:82186669-82186688 None:intergenic 30.0%
ACAAGAACAACAGTAGTATA+AGG + chr3_2:82186676-82186695 Msa0430380:five_prime_UTR 30.0%
TCATAAATTGAACAACAACG+AGG + chr3_2:82186725-82186744 Msa0430380:five_prime_UTR 30.0%
! TCATTGTTATCACAGTGTTT+TGG - chr3_2:82187001-82187020 None:intergenic 30.0%
AAAACACTGTGATAACAATG+AGG + chr3_2:82187000-82187019 Msa0430380:CDS 30.0%
TCCAAAAAAGAAAAGTGAGA+GGG - chr3_2:82187103-82187122 None:intergenic 30.0%
GATTCAAATCTTACTGCAAT+TGG + chr3_2:82187182-82187201 Msa0430380:intron 30.0%
TTCCTTTGACTGAAAATACA+AGG - chr3_2:82187265-82187284 None:intergenic 30.0%
! ATTTTCCAATGTGGCATAAT+TGG - chr3_2:82187452-82187471 None:intergenic 30.0%
TGATAGCATTTCATTTCACA+CGG - chr3_2:82187478-82187497 None:intergenic 30.0%
AAACAATGGGTAATCCTAAT+TGG + chr3_2:82187554-82187573 Msa0430380:intron 30.0%
!!! CTTGGATTTTGAGATGAAAA+TGG - chr3_2:82187949-82187968 None:intergenic 30.0%
TGTTTGATATTCTCAAAGGT+GGG - chr3_2:82188122-82188141 None:intergenic 30.0%
GGTTTCATAAAGTTCAATGT+AGG - chr3_2:82188408-82188427 None:intergenic 30.0%
TTATGCTGCTCATTAATTAC+AGG - chr3_2:82188429-82188448 None:intergenic 30.0%
ATAAAAATGCTCATAGCATC+TGG - chr3_2:82188623-82188642 None:intergenic 30.0%
AAGAGAATAAATGAGAGTTC+TGG - chr3_2:82188665-82188684 None:intergenic 30.0%
! TGGGTATCCATAGATTTTAA+AGG - chr3_2:82188810-82188829 None:intergenic 30.0%
! TTGTAATGAGAGTGTAATGA+CGG + chr3_2:82188855-82188874 Msa0430380:three_prime_UTR 30.0%
!! TCCCTCTCACTTTTCTTTTT+TGG + chr3_2:82187099-82187118 Msa0430380:intron 35.0%
CTCCAAAAAAGAAAAGTGAG+AGG - chr3_2:82187104-82187123 None:intergenic 35.0%
TCTTCATATCTACGTACTGT+TGG + chr3_2:82187160-82187179 Msa0430380:intron 35.0%
CAAATCTTACTGCAATTGGT+TGG + chr3_2:82187186-82187205 Msa0430380:intron 35.0%
! TGCCTTGTATTTTCAGTCAA+AGG + chr3_2:82187260-82187279 Msa0430380:intron 35.0%
!! TTGCTGCTTTGTCCAATTTA+AGG + chr3_2:82187404-82187423 Msa0430380:intron 35.0%
! TGCTTTGTCCAATTTAAGGT+AGG + chr3_2:82187408-82187427 Msa0430380:intron 35.0%
CATAGACACCTACCTTAAAT+TGG - chr3_2:82187419-82187438 None:intergenic 35.0%
AATCAAACACAGCACCAATT+AGG - chr3_2:82187571-82187590 None:intergenic 35.0%
ATCAGTGATGTGTGACTATT+TGG + chr3_2:82187645-82187664 Msa0430380:intron 35.0%
TTTGTGAATGAACACTGAAC+AGG + chr3_2:82187870-82187889 Msa0430380:intron 35.0%
TTGTGAATGAACACTGAACA+GGG + chr3_2:82187871-82187890 Msa0430380:intron 35.0%
! AATGATGATGAAAGAGGACT+TGG - chr3_2:82187967-82187986 None:intergenic 35.0%
! CTTGGAAATGATGATGAAAG+AGG - chr3_2:82187973-82187992 None:intergenic 35.0%
CTGTTTGATATTCTCAAAGG+TGG - chr3_2:82188123-82188142 None:intergenic 35.0%
! AATCAATTGCCAAAGCATCA+GGG + chr3_2:82188211-82188230 Msa0430380:CDS 35.0%
GAATAGTAGGTGGTGTATAA+AGG - chr3_2:82188296-82188315 None:intergenic 35.0%
TCATCACATTCAGGAATAGT+AGG - chr3_2:82188309-82188328 None:intergenic 35.0%
!! TCCCTCTCACTTTTCTTTTT+TGG + chr3_2:82187099-82187118 Msa0430380:intron 35.0%
CTCCAAAAAAGAAAAGTGAG+AGG - chr3_2:82187104-82187123 None:intergenic 35.0%
TCTTCATATCTACGTACTGT+TGG + chr3_2:82187160-82187179 Msa0430380:intron 35.0%
CAAATCTTACTGCAATTGGT+TGG + chr3_2:82187186-82187205 Msa0430380:intron 35.0%
! TGCCTTGTATTTTCAGTCAA+AGG + chr3_2:82187260-82187279 Msa0430380:intron 35.0%
!! TTGCTGCTTTGTCCAATTTA+AGG + chr3_2:82187404-82187423 Msa0430380:intron 35.0%
! TGCTTTGTCCAATTTAAGGT+AGG + chr3_2:82187408-82187427 Msa0430380:intron 35.0%
CATAGACACCTACCTTAAAT+TGG - chr3_2:82187419-82187438 None:intergenic 35.0%
AATCAAACACAGCACCAATT+AGG - chr3_2:82187571-82187590 None:intergenic 35.0%
ATCAGTGATGTGTGACTATT+TGG + chr3_2:82187645-82187664 Msa0430380:intron 35.0%
TTTGTGAATGAACACTGAAC+AGG + chr3_2:82187870-82187889 Msa0430380:intron 35.0%
TTGTGAATGAACACTGAACA+GGG + chr3_2:82187871-82187890 Msa0430380:intron 35.0%
! AATGATGATGAAAGAGGACT+TGG - chr3_2:82187967-82187986 None:intergenic 35.0%
! CTTGGAAATGATGATGAAAG+AGG - chr3_2:82187973-82187992 None:intergenic 35.0%
CTGTTTGATATTCTCAAAGG+TGG - chr3_2:82188123-82188142 None:intergenic 35.0%
! AATCAATTGCCAAAGCATCA+GGG + chr3_2:82188211-82188230 Msa0430380:CDS 35.0%
GAATAGTAGGTGGTGTATAA+AGG - chr3_2:82188296-82188315 None:intergenic 35.0%
TCATCACATTCAGGAATAGT+AGG - chr3_2:82188309-82188328 None:intergenic 35.0%
AATTGAACAACAACGAGGAG+AGG + chr3_2:82186730-82186749 Msa0430380:five_prime_UTR 40.0%
AAATGAACTCACGAGGAATG+CGG - chr3_2:82186763-82186782 None:intergenic 40.0%
GAGTAGTAAATGAACTCACG+AGG - chr3_2:82186770-82186789 None:intergenic 40.0%
TATAGCGGCAAAGATTTACG+CGG + chr3_2:82186946-82186965 Msa0430380:CDS 40.0%
CAAAGATTTACGCGGGATTA+AGG + chr3_2:82186954-82186973 Msa0430380:CDS 40.0%
GGTTGGATTGTTGAAGAAGA+TGG + chr3_2:82187049-82187068 Msa0430380:CDS 40.0%
!! TAAAAGTACCCTGCGATAAG+TGG - chr3_2:82187077-82187096 None:intergenic 40.0%
TCCATCCAATTATGCCACAT+TGG + chr3_2:82187444-82187463 Msa0430380:intron 40.0%
TCCAATGTGGCATAATTGGA+TGG - chr3_2:82187448-82187467 None:intergenic 40.0%
! ACACGGAAGATTTTCCAATG+TGG - chr3_2:82187461-82187480 None:intergenic 40.0%
TCGGAAATGAAGAGGAAGAT+GGG - chr3_2:82188020-82188039 None:intergenic 40.0%
TTGTTTGCATCCATACGAGA+CGG - chr3_2:82188045-82188064 None:intergenic 40.0%
GCGCTGTTTGATATTCTCAA+AGG - chr3_2:82188126-82188145 None:intergenic 40.0%
!! CTTGAAGTTGGTGATGAGAT+AGG - chr3_2:82188162-82188181 None:intergenic 40.0%
! GGTTTGGGATTTCTTGAAGT+TGG - chr3_2:82188174-82188193 None:intergenic 40.0%
CATGTTGGAATCATGGGTTT+GGG - chr3_2:82188189-82188208 None:intergenic 40.0%
CAAACCCATGATTCCAACAT+GGG + chr3_2:82188188-82188207 Msa0430380:CDS 40.0%
GATTCCCATGTTGGAATCAT+GGG - chr3_2:82188195-82188214 None:intergenic 40.0%
TGATTCCCATGTTGGAATCA+TGG - chr3_2:82188196-82188215 None:intergenic 40.0%
! TTGGCAATTGATTCCCATGT+TGG - chr3_2:82188204-82188223 None:intergenic 40.0%
! GAATCAATTGCCAAAGCATC+AGG + chr3_2:82188210-82188229 Msa0430380:CDS 40.0%
TAGGTGGTGTATAAAGGTTC+CGG - chr3_2:82188290-82188309 None:intergenic 40.0%
TCACATTCAGGAATAGTAGG+TGG - chr3_2:82188306-82188325 None:intergenic 40.0%
GTATCAGACTCATCACATTC+AGG - chr3_2:82188318-82188337 None:intergenic 40.0%
GATACTTCTACTGTTGAGTC+TGG + chr3_2:82188333-82188352 Msa0430380:CDS 40.0%
AGGCTTGGAAATTCAACCAT+TGG - chr3_2:82188359-82188378 None:intergenic 40.0%
TGATTTAGCAGAAGCTGCAA+AGG - chr3_2:82188379-82188398 None:intergenic 40.0%
ATCTCCTGCATTCTGTTATG+AGG - chr3_2:82188459-82188478 None:intergenic 40.0%
ATAACAGAATGCAGGAGATG+AGG + chr3_2:82188460-82188479 Msa0430380:CDS 40.0%
! GATGATTTGGAGCTTACTCT+TGG + chr3_2:82188552-82188571 Msa0430380:CDS 40.0%
TTGGAGCTTACTCTTGGAAA+TGG + chr3_2:82188558-82188577 Msa0430380:CDS 40.0%
GCTTACTCTTGGAAATGGAA+AGG + chr3_2:82188563-82188582 Msa0430380:CDS 40.0%
TCATTACAAGCTTACCTGGA+CGG - chr3_2:82188844-82188863 None:intergenic 40.0%
ACTCTCATTACAAGCTTACC+TGG - chr3_2:82188848-82188867 None:intergenic 40.0%
AATTGAACAACAACGAGGAG+AGG + chr3_2:82186730-82186749 Msa0430380:five_prime_UTR 40.0%
AAATGAACTCACGAGGAATG+CGG - chr3_2:82186763-82186782 None:intergenic 40.0%
GAGTAGTAAATGAACTCACG+AGG - chr3_2:82186770-82186789 None:intergenic 40.0%
TATAGCGGCAAAGATTTACG+CGG + chr3_2:82186946-82186965 Msa0430380:CDS 40.0%
CAAAGATTTACGCGGGATTA+AGG + chr3_2:82186954-82186973 Msa0430380:CDS 40.0%
GGTTGGATTGTTGAAGAAGA+TGG + chr3_2:82187049-82187068 Msa0430380:CDS 40.0%
!! TAAAAGTACCCTGCGATAAG+TGG - chr3_2:82187077-82187096 None:intergenic 40.0%
TCCATCCAATTATGCCACAT+TGG + chr3_2:82187444-82187463 Msa0430380:intron 40.0%
TCCAATGTGGCATAATTGGA+TGG - chr3_2:82187448-82187467 None:intergenic 40.0%
! ACACGGAAGATTTTCCAATG+TGG - chr3_2:82187461-82187480 None:intergenic 40.0%
TCGGAAATGAAGAGGAAGAT+GGG - chr3_2:82188020-82188039 None:intergenic 40.0%
TTGTTTGCATCCATACGAGA+CGG - chr3_2:82188045-82188064 None:intergenic 40.0%
GCGCTGTTTGATATTCTCAA+AGG - chr3_2:82188126-82188145 None:intergenic 40.0%
!! CTTGAAGTTGGTGATGAGAT+AGG - chr3_2:82188162-82188181 None:intergenic 40.0%
! GGTTTGGGATTTCTTGAAGT+TGG - chr3_2:82188174-82188193 None:intergenic 40.0%
CATGTTGGAATCATGGGTTT+GGG - chr3_2:82188189-82188208 None:intergenic 40.0%
CAAACCCATGATTCCAACAT+GGG + chr3_2:82188188-82188207 Msa0430380:CDS 40.0%
GATTCCCATGTTGGAATCAT+GGG - chr3_2:82188195-82188214 None:intergenic 40.0%
TGATTCCCATGTTGGAATCA+TGG - chr3_2:82188196-82188215 None:intergenic 40.0%
! TTGGCAATTGATTCCCATGT+TGG - chr3_2:82188204-82188223 None:intergenic 40.0%
! GAATCAATTGCCAAAGCATC+AGG + chr3_2:82188210-82188229 Msa0430380:CDS 40.0%
TAGGTGGTGTATAAAGGTTC+CGG - chr3_2:82188290-82188309 None:intergenic 40.0%
TCACATTCAGGAATAGTAGG+TGG - chr3_2:82188306-82188325 None:intergenic 40.0%
GTATCAGACTCATCACATTC+AGG - chr3_2:82188318-82188337 None:intergenic 40.0%
GATACTTCTACTGTTGAGTC+TGG + chr3_2:82188333-82188352 Msa0430380:CDS 40.0%
AGGCTTGGAAATTCAACCAT+TGG - chr3_2:82188359-82188378 None:intergenic 40.0%
TGATTTAGCAGAAGCTGCAA+AGG - chr3_2:82188379-82188398 None:intergenic 40.0%
ATCTCCTGCATTCTGTTATG+AGG - chr3_2:82188459-82188478 None:intergenic 40.0%
ATAACAGAATGCAGGAGATG+AGG + chr3_2:82188460-82188479 Msa0430380:CDS 40.0%
! GATGATTTGGAGCTTACTCT+TGG + chr3_2:82188552-82188571 Msa0430380:CDS 40.0%
TTGGAGCTTACTCTTGGAAA+TGG + chr3_2:82188558-82188577 Msa0430380:CDS 40.0%
GCTTACTCTTGGAAATGGAA+AGG + chr3_2:82188563-82188582 Msa0430380:CDS 40.0%
TCATTACAAGCTTACCTGGA+CGG - chr3_2:82188844-82188863 None:intergenic 40.0%
ACTCTCATTACAAGCTTACC+TGG - chr3_2:82188848-82188867 None:intergenic 40.0%
ATAGCGGCAAAGATTTACGC+GGG + chr3_2:82186947-82186966 Msa0430380:CDS 45.0%
AAAGCTCTTTGTGCTGAAGC+TGG + chr3_2:82187028-82187047 Msa0430380:CDS 45.0%
TGAACACTGAACAGGGATCA+AGG + chr3_2:82187878-82187897 Msa0430380:intron 45.0%
GAACACTGAACAGGGATCAA+GGG + chr3_2:82187879-82187898 Msa0430380:intron 45.0%
CTAACTTGGTAGGAAGGGAT+TGG - chr3_2:82187997-82188016 None:intergenic 45.0%
! ATGGGCTAACTTGGTAGGAA+GGG - chr3_2:82188002-82188021 None:intergenic 45.0%
!! AAGAGGAAGATGGGCTAACT+TGG - chr3_2:82188011-82188030 None:intergenic 45.0%
CTCGGAAATGAAGAGGAAGA+TGG - chr3_2:82188021-82188040 None:intergenic 45.0%
TGTTTGCATCCATACGAGAC+GGG - chr3_2:82188044-82188063 None:intergenic 45.0%
AAAGGTGGGAGAGACATGTT+GGG - chr3_2:82188108-82188127 None:intergenic 45.0%
!! GAAGTTGGTGATGAGATAGG+TGG - chr3_2:82188159-82188178 None:intergenic 45.0%
CCATGTTGGAATCATGGGTT+TGG - chr3_2:82188190-82188209 None:intergenic 45.0%
CCAAACCCATGATTCCAACA+TGG + chr3_2:82188187-82188206 Msa0430380:CDS 45.0%
TGCGAAGAAAGGGTGATTGA+AGG - chr3_2:82188241-82188260 None:intergenic 45.0%
TGGTGTATAAAGGTTCCGGT+GGG - chr3_2:82188286-82188305 None:intergenic 45.0%
AGGATTTCAGAGCCAGAGTT+TGG + chr3_2:82188480-82188499 Msa0430380:CDS 45.0%
GGATTTCAGAGCCAGAGTTT+GGG + chr3_2:82188481-82188500 Msa0430380:CDS 45.0%
GATTTCAGAGCCAGAGTTTG+GGG + chr3_2:82188482-82188501 Msa0430380:CDS 45.0%
TGGGGAAAGGATTCATGAAG+TGG + chr3_2:82188524-82188543 Msa0430380:CDS 45.0%
GGGGAAAGGATTCATGAAGT+GGG + chr3_2:82188525-82188544 Msa0430380:CDS 45.0%
! AAGGATTCATGAAGTGGGCT+TGG + chr3_2:82188530-82188549 Msa0430380:CDS 45.0%
! TGAAGTGGGCTTGGATGATT+TGG + chr3_2:82188539-82188558 Msa0430380:CDS 45.0%
CTGGACGGAACTCTTATTGT+GGG - chr3_2:82188829-82188848 None:intergenic 45.0%
! TGTAATGACGGAATGACCCA+TGG + chr3_2:82188867-82188886 Msa0430380:three_prime_UTR 45.0%
ATAGCGGCAAAGATTTACGC+GGG + chr3_2:82186947-82186966 Msa0430380:CDS 45.0%
AAAGCTCTTTGTGCTGAAGC+TGG + chr3_2:82187028-82187047 Msa0430380:CDS 45.0%
TGAACACTGAACAGGGATCA+AGG + chr3_2:82187878-82187897 Msa0430380:intron 45.0%
GAACACTGAACAGGGATCAA+GGG + chr3_2:82187879-82187898 Msa0430380:intron 45.0%
CTAACTTGGTAGGAAGGGAT+TGG - chr3_2:82187997-82188016 None:intergenic 45.0%
! ATGGGCTAACTTGGTAGGAA+GGG - chr3_2:82188002-82188021 None:intergenic 45.0%
!! AAGAGGAAGATGGGCTAACT+TGG - chr3_2:82188011-82188030 None:intergenic 45.0%
CTCGGAAATGAAGAGGAAGA+TGG - chr3_2:82188021-82188040 None:intergenic 45.0%
TGTTTGCATCCATACGAGAC+GGG - chr3_2:82188044-82188063 None:intergenic 45.0%
AAAGGTGGGAGAGACATGTT+GGG - chr3_2:82188108-82188127 None:intergenic 45.0%
!! GAAGTTGGTGATGAGATAGG+TGG - chr3_2:82188159-82188178 None:intergenic 45.0%
CCATGTTGGAATCATGGGTT+TGG - chr3_2:82188190-82188209 None:intergenic 45.0%
CCAAACCCATGATTCCAACA+TGG + chr3_2:82188187-82188206 Msa0430380:CDS 45.0%
TGCGAAGAAAGGGTGATTGA+AGG - chr3_2:82188241-82188260 None:intergenic 45.0%
TGGTGTATAAAGGTTCCGGT+GGG - chr3_2:82188286-82188305 None:intergenic 45.0%
AGGATTTCAGAGCCAGAGTT+TGG + chr3_2:82188480-82188499 Msa0430380:CDS 45.0%
GGATTTCAGAGCCAGAGTTT+GGG + chr3_2:82188481-82188500 Msa0430380:CDS 45.0%
GATTTCAGAGCCAGAGTTTG+GGG + chr3_2:82188482-82188501 Msa0430380:CDS 45.0%
TGGGGAAAGGATTCATGAAG+TGG + chr3_2:82188524-82188543 Msa0430380:CDS 45.0%
GGGGAAAGGATTCATGAAGT+GGG + chr3_2:82188525-82188544 Msa0430380:CDS 45.0%
! AAGGATTCATGAAGTGGGCT+TGG + chr3_2:82188530-82188549 Msa0430380:CDS 45.0%
! TGAAGTGGGCTTGGATGATT+TGG + chr3_2:82188539-82188558 Msa0430380:CDS 45.0%
CTGGACGGAACTCTTATTGT+GGG - chr3_2:82188829-82188848 None:intergenic 45.0%
!! AATAAAAAATAAAAAAACAA+TGG + chr3_2:82187540-82187559 Msa0430380:intron 5.0%
!! ATAAAAAATAAAAAAACAAT+GGG + chr3_2:82187541-82187560 Msa0430380:intron 5.0%
!! AATAAAAAATAAAAAAACAA+TGG + chr3_2:82187540-82187559 Msa0430380:intron 5.0%
!! ATAAAAAATAAAAAAACAAT+GGG + chr3_2:82187541-82187560 Msa0430380:intron 5.0%
AACAACAACGAGGAGAGGAC+AGG + chr3_2:82186735-82186754 Msa0430380:five_prime_UTR 50.0%
CAGTGTGGAATGGCTTCTGA+CGG + chr3_2:82186836-82186855 Msa0430380:exon 50.0%
TTCTGACGGAGCAACTTCAG+CGG + chr3_2:82186850-82186869 Msa0430380:CDS 50.0%
ACAACAGGAGGAGAGAGAGA+CGG + chr3_2:82186915-82186934 Msa0430380:CDS 50.0%
TTACGCGGGATTAAGGTCTC+AGG + chr3_2:82186961-82186980 Msa0430380:CDS 50.0%
TACGCGGGATTAAGGTCTCA+GGG + chr3_2:82186962-82186981 Msa0430380:CDS 50.0%
CTCTTTGTGCTGAAGCTGGT+TGG + chr3_2:82187032-82187051 Msa0430380:CDS 50.0%
AAGATGGCACCACTTATCGC+AGG + chr3_2:82187065-82187084 Msa0430380:CDS 50.0%
AGATGGCACCACTTATCGCA+GGG + chr3_2:82187066-82187085 Msa0430380:CDS 50.0%
TGGTAGGAAGGGATTGGACT+TGG - chr3_2:82187991-82188010 None:intergenic 50.0%
!! GATGGGCTAACTTGGTAGGA+AGG - chr3_2:82188003-82188022 None:intergenic 50.0%
!! GGAAGATGGGCTAACTTGGT+AGG - chr3_2:82188007-82188026 None:intergenic 50.0%
AAGGTGGGAGAGACATGTTG+GGG - chr3_2:82188107-82188126 None:intergenic 50.0%
CAAAGGTGGGAGAGACATGT+TGG - chr3_2:82188109-82188128 None:intergenic 50.0%
GAAGGATGTCCCTGATGCTT+TGG - chr3_2:82188223-82188242 None:intergenic 50.0%
GTATAAAGGTTCCGGTGGGA+TGG - chr3_2:82188282-82188301 None:intergenic 50.0%
GTGGTGTATAAAGGTTCCGG+TGG - chr3_2:82188287-82188306 None:intergenic 50.0%
CTACTGTTGAGTCTGGCCAA+TGG + chr3_2:82188340-82188359 Msa0430380:CDS 50.0%
TAGCAGAAGCTGCAAAGGCT+TGG - chr3_2:82188374-82188393 None:intergenic 50.0%
GCTGCCTCATAACAGAATGC+AGG + chr3_2:82188452-82188471 Msa0430380:CDS 50.0%
TGAATCCTTTCCCCAACCCA+AGG - chr3_2:82188519-82188538 None:intergenic 50.0%
CCTGGACGGAACTCTTATTG+TGG - chr3_2:82188830-82188849 None:intergenic 50.0%
CCACAATAAGAGTTCCGTCC+AGG + chr3_2:82188827-82188846 Msa0430380:three_prime_UTR 50.0%
AACAACAACGAGGAGAGGAC+AGG + chr3_2:82186735-82186754 Msa0430380:five_prime_UTR 50.0%
CAGTGTGGAATGGCTTCTGA+CGG + chr3_2:82186836-82186855 Msa0430380:exon 50.0%
TTCTGACGGAGCAACTTCAG+CGG + chr3_2:82186850-82186869 Msa0430380:CDS 50.0%
ACAACAGGAGGAGAGAGAGA+CGG + chr3_2:82186915-82186934 Msa0430380:CDS 50.0%
TTACGCGGGATTAAGGTCTC+AGG + chr3_2:82186961-82186980 Msa0430380:CDS 50.0%
TACGCGGGATTAAGGTCTCA+GGG + chr3_2:82186962-82186981 Msa0430380:CDS 50.0%
CTCTTTGTGCTGAAGCTGGT+TGG + chr3_2:82187032-82187051 Msa0430380:CDS 50.0%
AAGATGGCACCACTTATCGC+AGG + chr3_2:82187065-82187084 Msa0430380:CDS 50.0%
AGATGGCACCACTTATCGCA+GGG + chr3_2:82187066-82187085 Msa0430380:CDS 50.0%
TGGTAGGAAGGGATTGGACT+TGG - chr3_2:82187991-82188010 None:intergenic 50.0%
!! GATGGGCTAACTTGGTAGGA+AGG - chr3_2:82188003-82188022 None:intergenic 50.0%
!! GGAAGATGGGCTAACTTGGT+AGG - chr3_2:82188007-82188026 None:intergenic 50.0%
AAGGTGGGAGAGACATGTTG+GGG - chr3_2:82188107-82188126 None:intergenic 50.0%
CAAAGGTGGGAGAGACATGT+TGG - chr3_2:82188109-82188128 None:intergenic 50.0%
GAAGGATGTCCCTGATGCTT+TGG - chr3_2:82188223-82188242 None:intergenic 50.0%
GTATAAAGGTTCCGGTGGGA+TGG - chr3_2:82188282-82188301 None:intergenic 50.0%
GTGGTGTATAAAGGTTCCGG+TGG - chr3_2:82188287-82188306 None:intergenic 50.0%
CTACTGTTGAGTCTGGCCAA+TGG + chr3_2:82188340-82188359 Msa0430380:CDS 50.0%
TAGCAGAAGCTGCAAAGGCT+TGG - chr3_2:82188374-82188393 None:intergenic 50.0%
GCTGCCTCATAACAGAATGC+AGG + chr3_2:82188452-82188471 Msa0430380:CDS 50.0%
TGAATCCTTTCCCCAACCCA+AGG - chr3_2:82188519-82188538 None:intergenic 50.0%
CCTGGACGGAACTCTTATTG+TGG - chr3_2:82188830-82188849 None:intergenic 50.0%
CCACAATAAGAGTTCCGTCC+AGG + chr3_2:82188827-82188846 Msa0430380:three_prime_UTR 50.0%
TCAGCTACGACGCAGTTCAG+AGG + chr3_2:82186808-82186827 Msa0430380:five_prime_UTR 55.0%
! AGTTCAGAGGTGCAGCAGTG+TGG + chr3_2:82186821-82186840 Msa0430380:five_prime_UTR 55.0%
! AGAGGTGCAGCAGTGTGGAA+TGG + chr3_2:82186826-82186845 Msa0430380:exon 55.0%
CAGCGGCGAATTCAAGTCGT+CGG + chr3_2:82186867-82186886 Msa0430380:CDS 55.0%
TTCTCTCTCTCCCTCCACGA+CGG - chr3_2:82186896-82186915 None:intergenic 55.0%
GGAGGGAGAGAGAGAACAAC+AGG + chr3_2:82186900-82186919 Msa0430380:CDS 55.0%
GGGAGAGAGAGAACAACAGG+AGG + chr3_2:82186903-82186922 Msa0430380:CDS 55.0%
GAGACGGAGGAGAGCTATAG+CGG + chr3_2:82186931-82186950 Msa0430380:CDS 55.0%
ACGCGGGATTAAGGTCTCAG+GGG + chr3_2:82186963-82186982 Msa0430380:CDS 55.0%
GGATCAAGGGCAGAAACACC+AGG + chr3_2:82187892-82187911 Msa0430380:CDS 55.0%
AAATTTCCTGCACCGTCGCC+TGG - chr3_2:82187913-82187932 None:intergenic 55.0%
! AGACGGGCTCGGAAATGAAG+AGG - chr3_2:82188028-82188047 None:intergenic 55.0%
ATTTCCGAGCCCGTCTCGTA+TGG + chr3_2:82188032-82188051 Msa0430380:CDS 55.0%
GGGAACATGCTGCGAGCATA+TGG - chr3_2:82188087-82188106 None:intergenic 55.0%
GATGAGATAGGTGGCGTCAC+AGG - chr3_2:82188150-82188169 None:intergenic 55.0%
GCGCAGAAGCTGCGAAGAAA+GGG - chr3_2:82188251-82188270 None:intergenic 55.0%
!! TTCCGGTGGGATGGACTAGT+AGG - chr3_2:82188273-82188292 None:intergenic 55.0%
TTGACCTGCACCCCAAACTC+TGG - chr3_2:82188495-82188514 None:intergenic 55.0%
TGCAGGTCAAGCCTTGGGTT+GGG + chr3_2:82188505-82188524 Msa0430380:CDS 55.0%
!! TCAAGCCTTGGGTTGGGGAA+AGG + chr3_2:82188511-82188530 Msa0430380:CDS 55.0%
TCAGCTACGACGCAGTTCAG+AGG + chr3_2:82186808-82186827 Msa0430380:five_prime_UTR 55.0%
! AGTTCAGAGGTGCAGCAGTG+TGG + chr3_2:82186821-82186840 Msa0430380:five_prime_UTR 55.0%
! AGAGGTGCAGCAGTGTGGAA+TGG + chr3_2:82186826-82186845 Msa0430380:exon 55.0%
CAGCGGCGAATTCAAGTCGT+CGG + chr3_2:82186867-82186886 Msa0430380:CDS 55.0%
TTCTCTCTCTCCCTCCACGA+CGG - chr3_2:82186896-82186915 None:intergenic 55.0%
GGAGGGAGAGAGAGAACAAC+AGG + chr3_2:82186900-82186919 Msa0430380:CDS 55.0%
GGGAGAGAGAGAACAACAGG+AGG + chr3_2:82186903-82186922 Msa0430380:CDS 55.0%
GAGACGGAGGAGAGCTATAG+CGG + chr3_2:82186931-82186950 Msa0430380:CDS 55.0%
ACGCGGGATTAAGGTCTCAG+GGG + chr3_2:82186963-82186982 Msa0430380:CDS 55.0%
GGATCAAGGGCAGAAACACC+AGG + chr3_2:82187892-82187911 Msa0430380:CDS 55.0%
AAATTTCCTGCACCGTCGCC+TGG - chr3_2:82187913-82187932 None:intergenic 55.0%
! AGACGGGCTCGGAAATGAAG+AGG - chr3_2:82188028-82188047 None:intergenic 55.0%
ATTTCCGAGCCCGTCTCGTA+TGG + chr3_2:82188032-82188051 Msa0430380:CDS 55.0%
GGGAACATGCTGCGAGCATA+TGG - chr3_2:82188087-82188106 None:intergenic 55.0%
GATGAGATAGGTGGCGTCAC+AGG - chr3_2:82188150-82188169 None:intergenic 55.0%
GCGCAGAAGCTGCGAAGAAA+GGG - chr3_2:82188251-82188270 None:intergenic 55.0%
!! TTCCGGTGGGATGGACTAGT+AGG - chr3_2:82188273-82188292 None:intergenic 55.0%
TTGACCTGCACCCCAAACTC+TGG - chr3_2:82188495-82188514 None:intergenic 55.0%
TGCAGGTCAAGCCTTGGGTT+GGG + chr3_2:82188505-82188524 Msa0430380:CDS 55.0%
!! TCAAGCCTTGGGTTGGGGAA+AGG + chr3_2:82188511-82188530 Msa0430380:CDS 55.0%
ACAGGAGGAGAGAGAGACGG+AGG + chr3_2:82186918-82186937 Msa0430380:CDS 60.0%
AGGGCAGAAACACCAGGCGA+CGG + chr3_2:82187898-82187917 Msa0430380:CDS 60.0%
! GCATCCATACGAGACGGGCT+CGG - chr3_2:82188039-82188058 None:intergenic 60.0%
GGCGCAGAAGCTGCGAAGAA+AGG - chr3_2:82188252-82188271 None:intergenic 60.0%
CGCCTACTAGTCCATCCCAC+CGG + chr3_2:82188268-82188287 Msa0430380:CDS 60.0%
! AGAGCCAGAGTTTGGGGTGC+AGG + chr3_2:82188488-82188507 Msa0430380:CDS 60.0%
TTGGGGTGCAGGTCAAGCCT+TGG + chr3_2:82188499-82188518 Msa0430380:CDS 60.0%
TGGGGTGCAGGTCAAGCCTT+GGG + chr3_2:82188500-82188519 Msa0430380:CDS 60.0%
GTGCAGGTCAAGCCTTGGGT+TGG + chr3_2:82188504-82188523 Msa0430380:CDS 60.0%
! GCAGGTCAAGCCTTGGGTTG+GGG + chr3_2:82188506-82188525 Msa0430380:CDS 60.0%
ACAGGAGGAGAGAGAGACGG+AGG + chr3_2:82186918-82186937 Msa0430380:CDS 60.0%
AGGGCAGAAACACCAGGCGA+CGG + chr3_2:82187898-82187917 Msa0430380:CDS 60.0%
! GCATCCATACGAGACGGGCT+CGG - chr3_2:82188039-82188058 None:intergenic 60.0%
GGCGCAGAAGCTGCGAAGAA+AGG - chr3_2:82188252-82188271 None:intergenic 60.0%
CGCCTACTAGTCCATCCCAC+CGG + chr3_2:82188268-82188287 Msa0430380:CDS 60.0%
! AGAGCCAGAGTTTGGGGTGC+AGG + chr3_2:82188488-82188507 Msa0430380:CDS 60.0%
TTGGGGTGCAGGTCAAGCCT+TGG + chr3_2:82188499-82188518 Msa0430380:CDS 60.0%
TGGGGTGCAGGTCAAGCCTT+GGG + chr3_2:82188500-82188519 Msa0430380:CDS 60.0%
GTGCAGGTCAAGCCTTGGGT+TGG + chr3_2:82188504-82188523 Msa0430380:CDS 60.0%
! GCAGGTCAAGCCTTGGGTTG+GGG + chr3_2:82188506-82188525 Msa0430380:CDS 60.0%
CAAGTCGTCGGAAGCCGTCG+TGG + chr3_2:82186879-82186898 Msa0430380:CDS 65.0%
TCGTCGGAAGCCGTCGTGGA+GGG + chr3_2:82186883-82186902 Msa0430380:CDS 65.0%
GAAACACCAGGCGACGGTGC+AGG + chr3_2:82187904-82187923 Msa0430380:CDS 65.0%
CAAGTCGTCGGAAGCCGTCG+TGG + chr3_2:82186879-82186898 Msa0430380:CDS 65.0%
TCGTCGGAAGCCGTCGTGGA+GGG + chr3_2:82186883-82186902 Msa0430380:CDS 65.0%
GAAACACCAGGCGACGGTGC+AGG + chr3_2:82187904-82187923 Msa0430380:CDS 65.0%
GTCGTCGGAAGCCGTCGTGG+AGG + chr3_2:82186882-82186901 Msa0430380:CDS 70.0%
GTCGTCGGAAGCCGTCGTGG+AGG + chr3_2:82186882-82186901 Msa0430380:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 82186575 82188889 82186575 ID=Msa0430380;Name=Msa0430380
chr3_2 mRNA 82186575 82188889 82186575 ID=Msa0430380-mRNA-1;Parent=Msa0430380;Name=Msa0430380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=270|1|1|1|1|1|2|293|315
chr3_2 exon 82186575 82187087 82186575 ID=Msa0430380-mRNA-1:exon:22751;Parent=Msa0430380-mRNA-1
chr3_2 exon 82187892 82188889 82187892 ID=Msa0430380-mRNA-1:exon:22752;Parent=Msa0430380-mRNA-1
chr3_2 five_prime_UTR 82186575 82186844 82186575 ID=Msa0430380-mRNA-1:five_prime_utr;Parent=Msa0430380-mRNA-1
chr3_2 CDS 82186845 82187087 82186845 ID=Msa0430380-mRNA-1:cds;Parent=Msa0430380-mRNA-1
chr3_2 CDS 82187892 82188596 82187892 ID=Msa0430380-mRNA-1:cds;Parent=Msa0430380-mRNA-1
chr3_2 three_prime_UTR 82188597 82188889 82188597 ID=Msa0430380-mRNA-1:three_prime_utr;Parent=Msa0430380-mRNA-1
Gene Sequence

>Msa0430380

ATGGCTTCTGACGGAGCAACTTCAGCGGCGAATTCAAGTCGTCGGAAGCCGTCGTGGAGGGAGAGAGAGAACAACAGGAGGAGAGAGAGACGGAGGAGAGCTATAGCGGCAAAGATTTACGCGGGATTAAGGTCTCAGGGGAATTATAATTTACCAAAACACTGTGATAACAATGAGGTCTTGAAAGCTCTTTGTGCTGAAGCTGGTTGGATTGTTGAAGAAGATGGCACCACTTATCGCAGGGGATCAAGGGCAGAAACACCAGGCGACGGTGCAGGAAATTTTAACAGAAACAACCCATTTTCATCTCAAAATCCAAGTCCTCTTTCATCATCATTTCCAAGTCCAATCCCTTCCTACCAAGTTAGCCCATCTTCCTCTTCATTTCCGAGCCCGTCTCGTATGGATGCAAACAACAATGCATCAAATTACATTCCATATGCTCGCAGCATGTTCCCCAACATGTCTCTCCCACCTTTGAGAATATCAAACAGCGCGCCTGTGACGCCACCTATCTCATCACCAACTTCAAGAAATCCCAAACCCATGATTCCAACATGGGAATCAATTGCCAAAGCATCAGGGACATCCTTCAATCACCCTTTCTTCGCAGCTTCTGCGCCTACTAGTCCATCCCACCGGAACCTTTATACACCACCTACTATTCCTGAATGTGATGAGTCTGATACTTCTACTGTTGAGTCTGGCCAATGGTTGAATTTCCAAGCCTTTGCAGCTTCTGCTAAATCAGTCTCTCCTACATTGAACTTTATGAAACCTGTAATTAATGAGCAGCATAACATGCTGCCTCATAACAGAATGCAGGAGATGAGGATTTCAGAGCCAGAGTTTGGGGTGCAGGTCAAGCCTTGGGTTGGGGAAAGGATTCATGAAGTGGGCTTGGATGATTTGGAGCTTACTCTTGGAAATGGAAAGGCACCTAGTTAA
Protein sequence

>Msa0430380

MASDGATSAANSSRRKPSWRERENNRRRERRRRAIAAKIYAGLRSQGNYNLPKHCDNNEVLKALCAEAGWIVEEDGTTYRRGSRAETPGDGAGNFNRNNPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRMDANNNASNYIPYARSMFPNMSLPPLRISNSAPVTPPISSPTSRNPKPMIPTWESIAKASGTSFNHPFFAASAPTSPSHRNLYTPPTIPECDESDTSTVESGQWLNFQAFAASAKSVSPTLNFMKPVINEQHNMLPHNRMQEMRISEPEFGVQVKPWVGERIHEVGLDDLELTLGNGKAPS*