AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384360 MtrunA17_Chr3g0141401 99.048 315 3 0 1 315 1 315 0.0 638
Msa0384360 MtrunA17_Chr1g0154651 47.284 313 99 7 1 313 1 247 1.85e-81 247
Msa0384360 MtrunA17_Chr5g0403631 54.908 326 123 8 8 313 2 323 1.00e-74 232
Msa0384360 MtrunA17_Chr2g0315211 43.155 336 139 15 12 312 3 321 1.24e-33 125
Msa0384360 MtrunA17_Chr2g0315201 41.246 337 137 10 12 312 3 314 5.77e-32 121
Msa0384360 MtrunA17_Chr5g0408851 57.143 56 24 0 26 81 61 116 2.80e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384360 AT1G75080.2 65.094 318 88 10 14 313 22 334 3.83e-110 323
Msa0384360 AT1G75080.1 65.094 318 88 10 14 313 22 334 3.83e-110 323
Msa0384360 AT1G19350.3 64.375 320 91 9 14 315 43 357 3.55e-109 322
Msa0384360 AT1G19350.5 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0384360 AT1G19350.1 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0384360 AT1G19350.6 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0384360 AT1G19350.4 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0384360 AT3G50750.1 53.376 311 100 8 2 310 3 270 9.76e-71 221
Msa0384360 AT4G36780.1 58.794 199 75 3 15 209 16 211 1.82e-44 153
Msa0384360 AT1G78700.1 39.773 352 126 13 12 310 3 321 3.69e-37 135
Msa0384360 AT4G18890.1 41.720 314 136 13 12 312 3 282 2.25e-29 114
Msa0384360 AT2G45880.1 45.455 88 48 0 1 88 55 142 9.02e-15 75.5
Msa0384360 AT5G45300.2 57.143 56 24 0 26 81 97 152 1.62e-13 71.6
Msa0384360 AT5G45300.3 57.143 56 24 0 26 81 111 166 1.66e-13 71.6
Msa0384360 AT5G45300.1 57.143 56 24 0 26 81 97 152 1.66e-13 71.6

Find 130 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGGTCAAGCCTTGGGTT+GGG 0.244939 3_1:-87404363 Msa0384360:CDS
TAATAATCCTTTAAAATCTA+TGG 0.260043 3_1:-87404068 Msa0384360:three_prime_UTR
TTATGCTGCTCATTAATTAC+AGG 0.267539 3_1:+87404442 None:intergenic
CAAAGATTTACGCGGGATTA+AGG 0.278250 3_1:-87405914 Msa0384360:CDS
TGAAGTGGGCTTGGATGATT+TGG 0.316017 3_1:-87404329 Msa0384360:CDS
AGGATTTCAGAGCCAGAGTT+TGG 0.317045 3_1:-87404388 Msa0384360:CDS
CCATGTTGGAATCATGGGTT+TGG 0.326849 3_1:+87404681 None:intergenic
CATGTTGGAATCATGGGTTT+GGG 0.346172 3_1:+87404682 None:intergenic
ACAAGAACAACAGTAGTATA+AGG 0.369884 3_1:-87406192 Msa0384360:five_prime_UTR
AAGAGAATAAATGAGAGTTC+TGG 0.370557 3_1:+87404206 None:intergenic
TCATTGTTATCACAGTGTTT+TGG 0.378019 3_1:+87405870 None:intergenic
GAATCAATTGCCAAAGCATC+AGG 0.379878 3_1:-87404658 Msa0384360:CDS
AGTTAATGAAGACTAGTATA+TGG 0.383852 3_1:-87404277 Msa0384360:exon
GTGCAGGTCAAGCCTTGGGT+TGG 0.384192 3_1:-87404364 Msa0384360:CDS
GGATTTCAGAGCCAGAGTTT+GGG 0.385062 3_1:-87404387 Msa0384360:CDS
TTGGAGCTTACTCTTGGAAA+TGG 0.386518 3_1:-87404310 Msa0384360:CDS
TGGGGTGCAGGTCAAGCCTT+GGG 0.386786 3_1:-87404368 Msa0384360:CDS
TGATTCCCATGTTGGAATCA+TGG 0.387349 3_1:+87404675 None:intergenic
TTGGGGTGCAGGTCAAGCCT+TGG 0.395856 3_1:-87404369 Msa0384360:CDS
AGAGCCAGAGTTTGGGGTGC+AGG 0.400385 3_1:-87404380 Msa0384360:CDS
GAATAGTAGGTGGTGTATAA+AGG 0.410535 3_1:+87404575 None:intergenic
GATGATTTGGAGCTTACTCT+TGG 0.411343 3_1:-87404316 Msa0384360:CDS
GGCGCAGAAGCTGCGAAGAA+AGG 0.412024 3_1:+87404619 None:intergenic
GTATCAGACTCATCACATTC+AGG 0.421362 3_1:+87404553 None:intergenic
CTTGAAGTTGGTGATGAGAT+AGG 0.423563 3_1:+87404709 None:intergenic
GGGAACATGCTGCGAGCATA+TGG 0.428278 3_1:+87404784 None:intergenic
AAGGATTCATGAAGTGGGCT+TGG 0.442178 3_1:-87404338 Msa0384360:CDS
GCAGGTCAAGCCTTGGGTTG+GGG 0.445549 3_1:-87404362 Msa0384360:CDS
GAAACACCAGGCGACGGTGC+AGG 0.453828 3_1:-87404964 Msa0384360:CDS
GGAGGGAGAGAGAGAACAAC+AGG 0.454864 3_1:-87405968 Msa0384360:CDS
GAAGGATGTCCCTGATGCTT+TGG 0.455024 3_1:+87404648 None:intergenic
TAGGTGGTGTATAAAGGTTC+CGG 0.456174 3_1:+87404581 None:intergenic
TCATCACATTCAGGAATAGT+AGG 0.457941 3_1:+87404562 None:intergenic
ATTTCCGAGCCCGTCTCGTA+TGG 0.458323 3_1:-87404836 Msa0384360:CDS
AAGAGGAAGATGGGCTAACT+TGG 0.459342 3_1:+87404860 None:intergenic
TTACGCGGGATTAAGGTCTC+AGG 0.461228 3_1:-87405907 Msa0384360:CDS
AAATTTCCTGCACCGTCGCC+TGG 0.461316 3_1:+87404958 None:intergenic
AAAGCTCTTTGTGCTGAAGC+TGG 0.466712 3_1:-87405840 Msa0384360:CDS
CAAAGGTGGGAGAGACATGT+TGG 0.476794 3_1:+87404762 None:intergenic
TGAACACTGAACAGGGATCA+AGG 0.477060 3_1:-87404990 Msa0384360:intron
GATTCCCATGTTGGAATCAT+GGG 0.479782 3_1:+87404676 None:intergenic
GATACTTCTACTGTTGAGTC+TGG 0.480255 3_1:-87404535 Msa0384360:CDS
TAGCAGAAGCTGCAAAGGCT+TGG 0.482094 3_1:+87404497 None:intergenic
TCAAGCCTTGGGTTGGGGAA+AGG 0.483086 3_1:-87404357 Msa0384360:CDS
GCATCCATACGAGACGGGCT+CGG 0.486953 3_1:+87404832 None:intergenic
TGGTAGGAAGGGATTGGACT+TGG 0.487033 3_1:+87404880 None:intergenic
AATGATGATGAAAGAGGACT+TGG 0.489656 3_1:+87404904 None:intergenic
TTGGCAATTGATTCCCATGT+TGG 0.490224 3_1:+87404667 None:intergenic
CTGGACGGAACTCTTATTGT+GGG 0.491424 3_1:+87404042 None:intergenic
ATCTCCTGCATTCTGTTATG+AGG 0.491673 3_1:+87404412 None:intergenic
TTGACCTGCACCCCAAACTC+TGG 0.493982 3_1:+87404376 None:intergenic
GCGCAGAAGCTGCGAAGAAA+GGG 0.494226 3_1:+87404620 None:intergenic
AAAGGTGGGAGAGACATGTT+GGG 0.494510 3_1:+87404763 None:intergenic
GGTTTGGGATTTCTTGAAGT+TGG 0.496117 3_1:+87404697 None:intergenic
CTCTTTGTGCTGAAGCTGGT+TGG 0.496259 3_1:-87405836 Msa0384360:CDS
AGGCTTGGAAATTCAACCAT+TGG 0.499150 3_1:+87404512 None:intergenic
GGTTTCATAAAGTTCAATGT+AGG 0.500604 3_1:+87404463 None:intergenic
CTCGGAAATGAAGAGGAAGA+TGG 0.501823 3_1:+87404850 None:intergenic
GATGGGCTAACTTGGTAGGA+AGG 0.510153 3_1:+87404868 None:intergenic
TAAAAGTACCCTGCGATAAG+TGG 0.514725 3_1:+87405794 None:intergenic
TGCGAAGAAAGGGTGATTGA+AGG 0.517777 3_1:+87404630 None:intergenic
ACTCTCATTACAAGCTTACC+TGG 0.519328 3_1:+87404023 None:intergenic
GATGAGATAGGTGGCGTCAC+AGG 0.527145 3_1:+87404721 None:intergenic
CTAACTTGGTAGGAAGGGAT+TGG 0.532618 3_1:+87404874 None:intergenic
CCTGGACGGAACTCTTATTG+TGG 0.532874 3_1:+87404041 None:intergenic
TGATTTAGCAGAAGCTGCAA+AGG 0.535526 3_1:+87404492 None:intergenic
TGTTTGCATCCATACGAGAC+GGG 0.538446 3_1:+87404827 None:intergenic
CCACAATAAGAGTTCCGTCC+AGG 0.539358 3_1:-87404041 Msa0384360:three_prime_UTR
CTGTTTGATATTCTCAAAGG+TGG 0.543504 3_1:+87404748 None:intergenic
TTCCGGTGGGATGGACTAGT+AGG 0.544807 3_1:+87404598 None:intergenic
GTATAAAGGTTCCGGTGGGA+TGG 0.546631 3_1:+87404589 None:intergenic
TGAATCCTTTCCCCAACCCA+AGG 0.565111 3_1:+87404352 None:intergenic
AAGATGGCACCACTTATCGC+AGG 0.566281 3_1:-87405803 Msa0384360:CDS
GGATCAAGGGCAGAAACACC+AGG 0.568579 3_1:-87404976 Msa0384360:CDS
TCGTCGGAAGCCGTCGTGGA+GGG 0.569962 3_1:-87405985 Msa0384360:CDS
GGAAGATGGGCTAACTTGGT+AGG 0.570068 3_1:+87404864 None:intergenic
AACAACAACGAGGAGAGGAC+AGG 0.573582 3_1:-87406133 Msa0384360:five_prime_UTR
ATGGGCTAACTTGGTAGGAA+GGG 0.578259 3_1:+87404869 None:intergenic
CCAAACCCATGATTCCAACA+TGG 0.578571 3_1:-87404681 Msa0384360:CDS
AGAGGTGCAGCAGTGTGGAA+TGG 0.578750 3_1:-87406042 Msa0384360:exon
TACGCGGGATTAAGGTCTCA+GGG 0.579295 3_1:-87405906 Msa0384360:CDS
CTACTGTTGAGTCTGGCCAA+TGG 0.579821 3_1:-87404528 Msa0384360:CDS
TTGTTTGCATCCATACGAGA+CGG 0.580413 3_1:+87404826 None:intergenic
CTTGGAAATGATGATGAAAG+AGG 0.585676 3_1:+87404898 None:intergenic
TATACTAGTCTTCATTAACT+AGG 0.587526 3_1:+87404280 None:intergenic
TCGGAAATGAAGAGGAAGAT+GGG 0.591259 3_1:+87404851 None:intergenic
GAACACTGAACAGGGATCAA+GGG 0.592233 3_1:-87404989 Msa0384360:intron
GCTGCCTCATAACAGAATGC+AGG 0.597111 3_1:-87404416 Msa0384360:CDS
GATTTCAGAGCCAGAGTTTG+GGG 0.597331 3_1:-87404386 Msa0384360:CDS
GAGACGGAGGAGAGCTATAG+CGG 0.598645 3_1:-87405937 Msa0384360:CDS
GTGGTGTATAAAGGTTCCGG+TGG 0.599334 3_1:+87404584 None:intergenic
GGTTGGACTGTTGAAGAAGA+TGG 0.599436 3_1:-87405819 Msa0384360:CDS
TGGGGAAAGGATTCATGAAG+TGG 0.599526 3_1:-87404344 Msa0384360:CDS
GCGCTGTTTGATATTCTCAA+AGG 0.602416 3_1:+87404745 None:intergenic
TTGTAATGAGAGTGTAATGA+CGG 0.603568 3_1:-87404013 Msa0384360:three_prime_UTR
CAGTGTGGAATGGCTTCTGA+CGG 0.605971 3_1:-87406032 Msa0384360:exon
GTCGTCGGAAGCCGTCGTGG+AGG 0.608313 3_1:-87405986 Msa0384360:CDS
CGCCTACTAGTCCATCCCAC+CGG 0.608831 3_1:-87404600 Msa0384360:CDS
TGTTTGATATTCTCAAAGGT+GGG 0.611100 3_1:+87404749 None:intergenic
ACAACAGGAGGAGAGAGAGA+CGG 0.611729 3_1:-87405953 Msa0384360:CDS
ATAACAGAATGCAGGAGATG+AGG 0.612424 3_1:-87404408 Msa0384360:CDS
AGGGCAGAAACACCAGGCGA+CGG 0.612624 3_1:-87404970 Msa0384360:CDS
TTCTCTCTCTCCCTCCACGA+CGG 0.613396 3_1:+87405975 None:intergenic
CAAACCCATGATTCCAACAT+GGG 0.619565 3_1:-87404680 Msa0384360:CDS
AGACGGGCTCGGAAATGAAG+AGG 0.620195 3_1:+87404843 None:intergenic
AATTGAACAACAACGAGGAG+AGG 0.620364 3_1:-87406138 Msa0384360:five_prime_UTR
CAGCGGCGAATTCAAGTCGT+CGG 0.624367 3_1:-87406001 Msa0384360:CDS
GCTTACTCTTGGAAATGGAA+AGG 0.624748 3_1:-87404305 Msa0384360:CDS
CAAGTCGTCGGAAGCCGTCG+TGG 0.626877 3_1:-87405989 Msa0384360:CDS
GGGGAAAGGATTCATGAAGT+GGG 0.628370 3_1:-87404343 Msa0384360:CDS
TCATTACAAGCTTACCTGGA+CGG 0.629756 3_1:+87404027 None:intergenic
TCAGCTACGACGCAGTTCAG+AGG 0.629961 3_1:-87406060 Msa0384360:five_prime_UTR
ACAGGAGGAGAGAGAGACGG+AGG 0.634956 3_1:-87405950 Msa0384360:CDS
GGGAGAGAGAGAACAACAGG+AGG 0.636818 3_1:-87405965 Msa0384360:CDS
ATAGCGGCAAAGATTTACGC+GGG 0.642415 3_1:-87405921 Msa0384360:CDS
AATCAATTGCCAAAGCATCA+GGG 0.645925 3_1:-87404657 Msa0384360:CDS
TGTAATGACGGAATGACCCA+TGG 0.646414 3_1:-87404001 Msa0384360:three_prime_UTR
TCACATTCAGGAATAGTAGG+TGG 0.669687 3_1:+87404565 None:intergenic
AAAACACTGTGATAACAATG+AGG 0.672851 3_1:-87405868 Msa0384360:CDS
AGATGGCACCACTTATCGCA+GGG 0.680637 3_1:-87405802 Msa0384360:intron
TGGTGTATAAAGGTTCCGGT+GGG 0.684999 3_1:+87404585 None:intergenic
AAATGAACTCACGAGGAATG+CGG 0.687204 3_1:+87406108 None:intergenic
TTCTGACGGAGCAACTTCAG+CGG 0.689590 3_1:-87406018 Msa0384360:CDS
GAGTAGTAAATGAACTCACG+AGG 0.700575 3_1:+87406101 None:intergenic
TATAGCGGCAAAGATTTACG+CGG 0.709001 3_1:-87405922 Msa0384360:CDS
AGTTCAGAGGTGCAGCAGTG+TGG 0.709625 3_1:-87406047 Msa0384360:five_prime_UTR
ACGCGGGATTAAGGTCTCAG+GGG 0.722971 3_1:-87405905 Msa0384360:CDS
AAGGTGGGAGAGACATGTTG+GGG 0.734444 3_1:+87404764 None:intergenic
GAAGTTGGTGATGAGATAGG+TGG 0.736539 3_1:+87404712 None:intergenic
TCATAAATTGAACAACAACG+AGG 0.799135 3_1:-87406143 Msa0384360:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTGAAGAAAGA+TGG + chr3_1:87404947-87404966 None:intergenic 15.0%
!! ATAGTAAAAATAAGTTCATT+AGG + chr3_1:87405161-87405180 None:intergenic 15.0%
!! TTGAATAAACAACTTAATTA+AGG + chr3_1:87405228-87405247 None:intergenic 15.0%
!!! TAATAATCCTTTAAAATCTA+TGG - chr3_1:87406226-87406245 Msa0384360:five_prime_UTR 15.0%
!!! TTTATTTTTTTGAAGAAAGA+TGG + chr3_1:87404947-87404966 None:intergenic 15.0%
!! ATAGTAAAAATAAGTTCATT+AGG + chr3_1:87405161-87405180 None:intergenic 15.0%
!! TTGAATAAACAACTTAATTA+AGG + chr3_1:87405228-87405247 None:intergenic 15.0%
!!! TAATAATCCTTTAAAATCTA+TGG - chr3_1:87406226-87406245 Msa0384360:five_prime_UTR 15.0%
!!! AGTTTTGATGAAATTTTGTT+TGG - chr3_1:87404653-87404672 Msa0384360:CDS 20.0%
!! AATCTGAGTCAAATTAATTT+CGG - chr3_1:87404717-87404736 Msa0384360:CDS 20.0%
!!! AGTTTTGATGAAATTTTGTT+TGG - chr3_1:87404653-87404672 Msa0384360:CDS 20.0%
!! AATCTGAGTCAAATTAATTT+CGG - chr3_1:87404717-87404736 Msa0384360:CDS 20.0%
!!! TGATGAAATTTTGTTTGGTT+TGG - chr3_1:87404658-87404677 Msa0384360:CDS 25.0%
! AACTAGTAGTTGATTAATTG+AGG + chr3_1:87404754-87404773 None:intergenic 25.0%
! TTGAACAATCTAATCTGATT+TGG - chr3_1:87405016-87405035 Msa0384360:intron 25.0%
! TGAACAATCTAATCTGATTT+GGG - chr3_1:87405017-87405036 Msa0384360:intron 25.0%
! GTTCATTAGGAAGTAAAAAT+AGG + chr3_1:87405148-87405167 None:intergenic 25.0%
!! TATCTGATAAGAATCTGTTT+TGG - chr3_1:87405257-87405276 Msa0384360:intron 25.0%
!!! TTGGATTTTGAGATGAAAAT+GGG + chr3_1:87405374-87405393 None:intergenic 25.0%
!!! TATACTAGTCTTCATTAACT+AGG + chr3_1:87406017-87406036 None:intergenic 25.0%
! AGTTAATGAAGACTAGTATA+TGG - chr3_1:87406017-87406036 Msa0384360:CDS 25.0%
!!! TGATGAAATTTTGTTTGGTT+TGG - chr3_1:87404658-87404677 Msa0384360:CDS 25.0%
! AACTAGTAGTTGATTAATTG+AGG + chr3_1:87404754-87404773 None:intergenic 25.0%
! TTGAACAATCTAATCTGATT+TGG - chr3_1:87405016-87405035 Msa0384360:intron 25.0%
! TGAACAATCTAATCTGATTT+GGG - chr3_1:87405017-87405036 Msa0384360:intron 25.0%
! GTTCATTAGGAAGTAAAAAT+AGG + chr3_1:87405148-87405167 None:intergenic 25.0%
!! TATCTGATAAGAATCTGTTT+TGG - chr3_1:87405257-87405276 Msa0384360:intron 25.0%
!!! TTGGATTTTGAGATGAAAAT+GGG + chr3_1:87405374-87405393 None:intergenic 25.0%
!!! TATACTAGTCTTCATTAACT+AGG + chr3_1:87406017-87406036 None:intergenic 25.0%
! AGTTAATGAAGACTAGTATA+TGG - chr3_1:87406017-87406036 Msa0384360:CDS 25.0%
!!! GTTCTTGTTTTTGTTTGGTT+TGG + chr3_1:87404090-87404109 None:intergenic 30.0%
!!! CTGTTGTTCTTGTTTTTGTT+TGG + chr3_1:87404095-87404114 None:intergenic 30.0%
ACAAGAACAACAGTAGTATA+AGG - chr3_1:87404102-87404121 Msa0384360:three_prime_UTR 30.0%
TCATAAATTGAACAACAACG+AGG - chr3_1:87404151-87404170 Msa0384360:three_prime_UTR 30.0%
! TCATTGTTATCACAGTGTTT+TGG + chr3_1:87404427-87404446 None:intergenic 30.0%
AAAACACTGTGATAACAATG+AGG - chr3_1:87404426-87404445 Msa0384360:CDS 30.0%
TCCAAAAAAGAAAAGTGAGA+GGG + chr3_1:87404529-87404548 None:intergenic 30.0%
GATTCAAATCTTACTGCAAT+TGG - chr3_1:87404608-87404627 Msa0384360:CDS 30.0%
TTCCTTTGACTGAAAATACA+AGG + chr3_1:87404691-87404710 None:intergenic 30.0%
! ATTTTCCAATGTGGCATAAT+TGG + chr3_1:87404878-87404897 None:intergenic 30.0%
TGATAGCATTTCATTTCACA+CGG + chr3_1:87404904-87404923 None:intergenic 30.0%
AAACAATGGGTAATCCTAAT+TGG - chr3_1:87404980-87404999 Msa0384360:intron 30.0%
!!! CTTGGATTTTGAGATGAAAA+TGG + chr3_1:87405375-87405394 None:intergenic 30.0%
TGTTTGATATTCTCAAAGGT+GGG + chr3_1:87405548-87405567 None:intergenic 30.0%
GGTTTCATAAAGTTCAATGT+AGG + chr3_1:87405834-87405853 None:intergenic 30.0%
TTATGCTGCTCATTAATTAC+AGG + chr3_1:87405855-87405874 None:intergenic 30.0%
ATAAAAATGCTCATAGCATC+TGG + chr3_1:87406049-87406068 None:intergenic 30.0%
AAGAGAATAAATGAGAGTTC+TGG + chr3_1:87406091-87406110 None:intergenic 30.0%
! TGGGTATCCATAGATTTTAA+AGG + chr3_1:87406236-87406255 None:intergenic 30.0%
! TTGTAATGAGAGTGTAATGA+CGG - chr3_1:87406281-87406300 Msa0384360:five_prime_UTR 30.0%
!!! GTTCTTGTTTTTGTTTGGTT+TGG + chr3_1:87404090-87404109 None:intergenic 30.0%
!!! CTGTTGTTCTTGTTTTTGTT+TGG + chr3_1:87404095-87404114 None:intergenic 30.0%
ACAAGAACAACAGTAGTATA+AGG - chr3_1:87404102-87404121 Msa0384360:three_prime_UTR 30.0%
TCATAAATTGAACAACAACG+AGG - chr3_1:87404151-87404170 Msa0384360:three_prime_UTR 30.0%
! TCATTGTTATCACAGTGTTT+TGG + chr3_1:87404427-87404446 None:intergenic 30.0%
AAAACACTGTGATAACAATG+AGG - chr3_1:87404426-87404445 Msa0384360:CDS 30.0%
TCCAAAAAAGAAAAGTGAGA+GGG + chr3_1:87404529-87404548 None:intergenic 30.0%
GATTCAAATCTTACTGCAAT+TGG - chr3_1:87404608-87404627 Msa0384360:CDS 30.0%
TTCCTTTGACTGAAAATACA+AGG + chr3_1:87404691-87404710 None:intergenic 30.0%
! ATTTTCCAATGTGGCATAAT+TGG + chr3_1:87404878-87404897 None:intergenic 30.0%
TGATAGCATTTCATTTCACA+CGG + chr3_1:87404904-87404923 None:intergenic 30.0%
AAACAATGGGTAATCCTAAT+TGG - chr3_1:87404980-87404999 Msa0384360:intron 30.0%
!!! CTTGGATTTTGAGATGAAAA+TGG + chr3_1:87405375-87405394 None:intergenic 30.0%
TGTTTGATATTCTCAAAGGT+GGG + chr3_1:87405548-87405567 None:intergenic 30.0%
GGTTTCATAAAGTTCAATGT+AGG + chr3_1:87405834-87405853 None:intergenic 30.0%
TTATGCTGCTCATTAATTAC+AGG + chr3_1:87405855-87405874 None:intergenic 30.0%
ATAAAAATGCTCATAGCATC+TGG + chr3_1:87406049-87406068 None:intergenic 30.0%
AAGAGAATAAATGAGAGTTC+TGG + chr3_1:87406091-87406110 None:intergenic 30.0%
! TGGGTATCCATAGATTTTAA+AGG + chr3_1:87406236-87406255 None:intergenic 30.0%
! TTGTAATGAGAGTGTAATGA+CGG - chr3_1:87406281-87406300 Msa0384360:five_prime_UTR 30.0%
!! TCCCTCTCACTTTTCTTTTT+TGG - chr3_1:87404525-87404544 Msa0384360:CDS 35.0%
CTCCAAAAAAGAAAAGTGAG+AGG + chr3_1:87404530-87404549 None:intergenic 35.0%
TCTTCATATCTACGTACTGT+TGG - chr3_1:87404586-87404605 Msa0384360:CDS 35.0%
CAAATCTTACTGCAATTGGT+TGG - chr3_1:87404612-87404631 Msa0384360:CDS 35.0%
! TGCCTTGTATTTTCAGTCAA+AGG - chr3_1:87404686-87404705 Msa0384360:CDS 35.0%
!! TTGCTGCTTTGTCCAATTTA+AGG - chr3_1:87404830-87404849 Msa0384360:CDS 35.0%
! TGCTTTGTCCAATTTAAGGT+AGG - chr3_1:87404834-87404853 Msa0384360:CDS 35.0%
CATAGACACCTACCTTAAAT+TGG + chr3_1:87404845-87404864 None:intergenic 35.0%
AATCAAACACAGCACCAATT+AGG + chr3_1:87404997-87405016 None:intergenic 35.0%
ATCAGTGATGTGTGACTATT+TGG - chr3_1:87405071-87405090 Msa0384360:intron 35.0%
TTTGTGAATGAACACTGAAC+AGG - chr3_1:87405296-87405315 Msa0384360:intron 35.0%
TTGTGAATGAACACTGAACA+GGG - chr3_1:87405297-87405316 Msa0384360:intron 35.0%
! AATGATGATGAAAGAGGACT+TGG + chr3_1:87405393-87405412 None:intergenic 35.0%
! CTTGGAAATGATGATGAAAG+AGG + chr3_1:87405399-87405418 None:intergenic 35.0%
CTGTTTGATATTCTCAAAGG+TGG + chr3_1:87405549-87405568 None:intergenic 35.0%
! AATCAATTGCCAAAGCATCA+GGG - chr3_1:87405637-87405656 Msa0384360:intron 35.0%
GAATAGTAGGTGGTGTATAA+AGG + chr3_1:87405722-87405741 None:intergenic 35.0%
TCATCACATTCAGGAATAGT+AGG + chr3_1:87405735-87405754 None:intergenic 35.0%
!! TCCCTCTCACTTTTCTTTTT+TGG - chr3_1:87404525-87404544 Msa0384360:CDS 35.0%
CTCCAAAAAAGAAAAGTGAG+AGG + chr3_1:87404530-87404549 None:intergenic 35.0%
TCTTCATATCTACGTACTGT+TGG - chr3_1:87404586-87404605 Msa0384360:CDS 35.0%
CAAATCTTACTGCAATTGGT+TGG - chr3_1:87404612-87404631 Msa0384360:CDS 35.0%
! TGCCTTGTATTTTCAGTCAA+AGG - chr3_1:87404686-87404705 Msa0384360:CDS 35.0%
!! TTGCTGCTTTGTCCAATTTA+AGG - chr3_1:87404830-87404849 Msa0384360:CDS 35.0%
! TGCTTTGTCCAATTTAAGGT+AGG - chr3_1:87404834-87404853 Msa0384360:CDS 35.0%
CATAGACACCTACCTTAAAT+TGG + chr3_1:87404845-87404864 None:intergenic 35.0%
AATCAAACACAGCACCAATT+AGG + chr3_1:87404997-87405016 None:intergenic 35.0%
ATCAGTGATGTGTGACTATT+TGG - chr3_1:87405071-87405090 Msa0384360:intron 35.0%
TTTGTGAATGAACACTGAAC+AGG - chr3_1:87405296-87405315 Msa0384360:intron 35.0%
TTGTGAATGAACACTGAACA+GGG - chr3_1:87405297-87405316 Msa0384360:intron 35.0%
! AATGATGATGAAAGAGGACT+TGG + chr3_1:87405393-87405412 None:intergenic 35.0%
! CTTGGAAATGATGATGAAAG+AGG + chr3_1:87405399-87405418 None:intergenic 35.0%
CTGTTTGATATTCTCAAAGG+TGG + chr3_1:87405549-87405568 None:intergenic 35.0%
! AATCAATTGCCAAAGCATCA+GGG - chr3_1:87405637-87405656 Msa0384360:intron 35.0%
GAATAGTAGGTGGTGTATAA+AGG + chr3_1:87405722-87405741 None:intergenic 35.0%
TCATCACATTCAGGAATAGT+AGG + chr3_1:87405735-87405754 None:intergenic 35.0%
AATTGAACAACAACGAGGAG+AGG - chr3_1:87404156-87404175 Msa0384360:three_prime_UTR 40.0%
AAATGAACTCACGAGGAATG+CGG + chr3_1:87404189-87404208 None:intergenic 40.0%
GAGTAGTAAATGAACTCACG+AGG + chr3_1:87404196-87404215 None:intergenic 40.0%
TATAGCGGCAAAGATTTACG+CGG - chr3_1:87404372-87404391 Msa0384360:CDS 40.0%
CAAAGATTTACGCGGGATTA+AGG - chr3_1:87404380-87404399 Msa0384360:CDS 40.0%
!! TAAAAGTACCCTGCGATAAG+TGG + chr3_1:87404503-87404522 None:intergenic 40.0%
TCCATCCAATTATGCCACAT+TGG - chr3_1:87404870-87404889 Msa0384360:CDS 40.0%
TCCAATGTGGCATAATTGGA+TGG + chr3_1:87404874-87404893 None:intergenic 40.0%
! ACACGGAAGATTTTCCAATG+TGG + chr3_1:87404887-87404906 None:intergenic 40.0%
TCGGAAATGAAGAGGAAGAT+GGG + chr3_1:87405446-87405465 None:intergenic 40.0%
TTGTTTGCATCCATACGAGA+CGG + chr3_1:87405471-87405490 None:intergenic 40.0%
GCGCTGTTTGATATTCTCAA+AGG + chr3_1:87405552-87405571 None:intergenic 40.0%
!! CTTGAAGTTGGTGATGAGAT+AGG + chr3_1:87405588-87405607 None:intergenic 40.0%
! GGTTTGGGATTTCTTGAAGT+TGG + chr3_1:87405600-87405619 None:intergenic 40.0%
CATGTTGGAATCATGGGTTT+GGG + chr3_1:87405615-87405634 None:intergenic 40.0%
CAAACCCATGATTCCAACAT+GGG - chr3_1:87405614-87405633 Msa0384360:intron 40.0%
GATTCCCATGTTGGAATCAT+GGG + chr3_1:87405621-87405640 None:intergenic 40.0%
TGATTCCCATGTTGGAATCA+TGG + chr3_1:87405622-87405641 None:intergenic 40.0%
! TTGGCAATTGATTCCCATGT+TGG + chr3_1:87405630-87405649 None:intergenic 40.0%
! GAATCAATTGCCAAAGCATC+AGG - chr3_1:87405636-87405655 Msa0384360:intron 40.0%
TAGGTGGTGTATAAAGGTTC+CGG + chr3_1:87405716-87405735 None:intergenic 40.0%
TCACATTCAGGAATAGTAGG+TGG + chr3_1:87405732-87405751 None:intergenic 40.0%
GTATCAGACTCATCACATTC+AGG + chr3_1:87405744-87405763 None:intergenic 40.0%
GATACTTCTACTGTTGAGTC+TGG - chr3_1:87405759-87405778 Msa0384360:intron 40.0%
AGGCTTGGAAATTCAACCAT+TGG + chr3_1:87405785-87405804 None:intergenic 40.0%
TGATTTAGCAGAAGCTGCAA+AGG + chr3_1:87405805-87405824 None:intergenic 40.0%
ATCTCCTGCATTCTGTTATG+AGG + chr3_1:87405885-87405904 None:intergenic 40.0%
ATAACAGAATGCAGGAGATG+AGG - chr3_1:87405886-87405905 Msa0384360:CDS 40.0%
! GATGATTTGGAGCTTACTCT+TGG - chr3_1:87405978-87405997 Msa0384360:CDS 40.0%
TTGGAGCTTACTCTTGGAAA+TGG - chr3_1:87405984-87406003 Msa0384360:CDS 40.0%
GCTTACTCTTGGAAATGGAA+AGG - chr3_1:87405989-87406008 Msa0384360:CDS 40.0%
TCATTACAAGCTTACCTGGA+CGG + chr3_1:87406270-87406289 None:intergenic 40.0%
ACTCTCATTACAAGCTTACC+TGG + chr3_1:87406274-87406293 None:intergenic 40.0%
AATTGAACAACAACGAGGAG+AGG - chr3_1:87404156-87404175 Msa0384360:three_prime_UTR 40.0%
AAATGAACTCACGAGGAATG+CGG + chr3_1:87404189-87404208 None:intergenic 40.0%
GAGTAGTAAATGAACTCACG+AGG + chr3_1:87404196-87404215 None:intergenic 40.0%
TATAGCGGCAAAGATTTACG+CGG - chr3_1:87404372-87404391 Msa0384360:CDS 40.0%
CAAAGATTTACGCGGGATTA+AGG - chr3_1:87404380-87404399 Msa0384360:CDS 40.0%
!! TAAAAGTACCCTGCGATAAG+TGG + chr3_1:87404503-87404522 None:intergenic 40.0%
TCCATCCAATTATGCCACAT+TGG - chr3_1:87404870-87404889 Msa0384360:CDS 40.0%
TCCAATGTGGCATAATTGGA+TGG + chr3_1:87404874-87404893 None:intergenic 40.0%
! ACACGGAAGATTTTCCAATG+TGG + chr3_1:87404887-87404906 None:intergenic 40.0%
TCGGAAATGAAGAGGAAGAT+GGG + chr3_1:87405446-87405465 None:intergenic 40.0%
TTGTTTGCATCCATACGAGA+CGG + chr3_1:87405471-87405490 None:intergenic 40.0%
GCGCTGTTTGATATTCTCAA+AGG + chr3_1:87405552-87405571 None:intergenic 40.0%
!! CTTGAAGTTGGTGATGAGAT+AGG + chr3_1:87405588-87405607 None:intergenic 40.0%
! GGTTTGGGATTTCTTGAAGT+TGG + chr3_1:87405600-87405619 None:intergenic 40.0%
CATGTTGGAATCATGGGTTT+GGG + chr3_1:87405615-87405634 None:intergenic 40.0%
CAAACCCATGATTCCAACAT+GGG - chr3_1:87405614-87405633 Msa0384360:intron 40.0%
GATTCCCATGTTGGAATCAT+GGG + chr3_1:87405621-87405640 None:intergenic 40.0%
TGATTCCCATGTTGGAATCA+TGG + chr3_1:87405622-87405641 None:intergenic 40.0%
! TTGGCAATTGATTCCCATGT+TGG + chr3_1:87405630-87405649 None:intergenic 40.0%
! GAATCAATTGCCAAAGCATC+AGG - chr3_1:87405636-87405655 Msa0384360:intron 40.0%
TAGGTGGTGTATAAAGGTTC+CGG + chr3_1:87405716-87405735 None:intergenic 40.0%
TCACATTCAGGAATAGTAGG+TGG + chr3_1:87405732-87405751 None:intergenic 40.0%
GTATCAGACTCATCACATTC+AGG + chr3_1:87405744-87405763 None:intergenic 40.0%
GATACTTCTACTGTTGAGTC+TGG - chr3_1:87405759-87405778 Msa0384360:intron 40.0%
AGGCTTGGAAATTCAACCAT+TGG + chr3_1:87405785-87405804 None:intergenic 40.0%
TGATTTAGCAGAAGCTGCAA+AGG + chr3_1:87405805-87405824 None:intergenic 40.0%
ATCTCCTGCATTCTGTTATG+AGG + chr3_1:87405885-87405904 None:intergenic 40.0%
ATAACAGAATGCAGGAGATG+AGG - chr3_1:87405886-87405905 Msa0384360:CDS 40.0%
! GATGATTTGGAGCTTACTCT+TGG - chr3_1:87405978-87405997 Msa0384360:CDS 40.0%
TTGGAGCTTACTCTTGGAAA+TGG - chr3_1:87405984-87406003 Msa0384360:CDS 40.0%
GCTTACTCTTGGAAATGGAA+AGG - chr3_1:87405989-87406008 Msa0384360:CDS 40.0%
TCATTACAAGCTTACCTGGA+CGG + chr3_1:87406270-87406289 None:intergenic 40.0%
ACTCTCATTACAAGCTTACC+TGG + chr3_1:87406274-87406293 None:intergenic 40.0%
ATAGCGGCAAAGATTTACGC+GGG - chr3_1:87404373-87404392 Msa0384360:CDS 45.0%
AAAGCTCTTTGTGCTGAAGC+TGG - chr3_1:87404454-87404473 Msa0384360:CDS 45.0%
GGTTGGACTGTTGAAGAAGA+TGG - chr3_1:87404475-87404494 Msa0384360:CDS 45.0%
TGAACACTGAACAGGGATCA+AGG - chr3_1:87405304-87405323 Msa0384360:intron 45.0%
GAACACTGAACAGGGATCAA+GGG - chr3_1:87405305-87405324 Msa0384360:intron 45.0%
CTAACTTGGTAGGAAGGGAT+TGG + chr3_1:87405423-87405442 None:intergenic 45.0%
! ATGGGCTAACTTGGTAGGAA+GGG + chr3_1:87405428-87405447 None:intergenic 45.0%
!! AAGAGGAAGATGGGCTAACT+TGG + chr3_1:87405437-87405456 None:intergenic 45.0%
CTCGGAAATGAAGAGGAAGA+TGG + chr3_1:87405447-87405466 None:intergenic 45.0%
TGTTTGCATCCATACGAGAC+GGG + chr3_1:87405470-87405489 None:intergenic 45.0%
AAAGGTGGGAGAGACATGTT+GGG + chr3_1:87405534-87405553 None:intergenic 45.0%
!! GAAGTTGGTGATGAGATAGG+TGG + chr3_1:87405585-87405604 None:intergenic 45.0%
CCATGTTGGAATCATGGGTT+TGG + chr3_1:87405616-87405635 None:intergenic 45.0%
CCAAACCCATGATTCCAACA+TGG - chr3_1:87405613-87405632 Msa0384360:intron 45.0%
TGCGAAGAAAGGGTGATTGA+AGG + chr3_1:87405667-87405686 None:intergenic 45.0%
TGGTGTATAAAGGTTCCGGT+GGG + chr3_1:87405712-87405731 None:intergenic 45.0%
AGGATTTCAGAGCCAGAGTT+TGG - chr3_1:87405906-87405925 Msa0384360:CDS 45.0%
GGATTTCAGAGCCAGAGTTT+GGG - chr3_1:87405907-87405926 Msa0384360:CDS 45.0%
GATTTCAGAGCCAGAGTTTG+GGG - chr3_1:87405908-87405927 Msa0384360:CDS 45.0%
TGGGGAAAGGATTCATGAAG+TGG - chr3_1:87405950-87405969 Msa0384360:CDS 45.0%
GGGGAAAGGATTCATGAAGT+GGG - chr3_1:87405951-87405970 Msa0384360:CDS 45.0%
! AAGGATTCATGAAGTGGGCT+TGG - chr3_1:87405956-87405975 Msa0384360:CDS 45.0%
! TGAAGTGGGCTTGGATGATT+TGG - chr3_1:87405965-87405984 Msa0384360:CDS 45.0%
CTGGACGGAACTCTTATTGT+GGG + chr3_1:87406255-87406274 None:intergenic 45.0%
! TGTAATGACGGAATGACCCA+TGG - chr3_1:87406293-87406312 Msa0384360:five_prime_UTR 45.0%
ATAGCGGCAAAGATTTACGC+GGG - chr3_1:87404373-87404392 Msa0384360:CDS 45.0%
AAAGCTCTTTGTGCTGAAGC+TGG - chr3_1:87404454-87404473 Msa0384360:CDS 45.0%
GGTTGGACTGTTGAAGAAGA+TGG - chr3_1:87404475-87404494 Msa0384360:CDS 45.0%
TGAACACTGAACAGGGATCA+AGG - chr3_1:87405304-87405323 Msa0384360:intron 45.0%
GAACACTGAACAGGGATCAA+GGG - chr3_1:87405305-87405324 Msa0384360:intron 45.0%
CTAACTTGGTAGGAAGGGAT+TGG + chr3_1:87405423-87405442 None:intergenic 45.0%
! ATGGGCTAACTTGGTAGGAA+GGG + chr3_1:87405428-87405447 None:intergenic 45.0%
!! AAGAGGAAGATGGGCTAACT+TGG + chr3_1:87405437-87405456 None:intergenic 45.0%
CTCGGAAATGAAGAGGAAGA+TGG + chr3_1:87405447-87405466 None:intergenic 45.0%
TGTTTGCATCCATACGAGAC+GGG + chr3_1:87405470-87405489 None:intergenic 45.0%
AAAGGTGGGAGAGACATGTT+GGG + chr3_1:87405534-87405553 None:intergenic 45.0%
!! GAAGTTGGTGATGAGATAGG+TGG + chr3_1:87405585-87405604 None:intergenic 45.0%
CCATGTTGGAATCATGGGTT+TGG + chr3_1:87405616-87405635 None:intergenic 45.0%
CCAAACCCATGATTCCAACA+TGG - chr3_1:87405613-87405632 Msa0384360:intron 45.0%
TGCGAAGAAAGGGTGATTGA+AGG + chr3_1:87405667-87405686 None:intergenic 45.0%
TGGTGTATAAAGGTTCCGGT+GGG + chr3_1:87405712-87405731 None:intergenic 45.0%
AGGATTTCAGAGCCAGAGTT+TGG - chr3_1:87405906-87405925 Msa0384360:CDS 45.0%
GGATTTCAGAGCCAGAGTTT+GGG - chr3_1:87405907-87405926 Msa0384360:CDS 45.0%
GATTTCAGAGCCAGAGTTTG+GGG - chr3_1:87405908-87405927 Msa0384360:CDS 45.0%
TGGGGAAAGGATTCATGAAG+TGG - chr3_1:87405950-87405969 Msa0384360:CDS 45.0%
GGGGAAAGGATTCATGAAGT+GGG - chr3_1:87405951-87405970 Msa0384360:CDS 45.0%
! AAGGATTCATGAAGTGGGCT+TGG - chr3_1:87405956-87405975 Msa0384360:CDS 45.0%
! TGAAGTGGGCTTGGATGATT+TGG - chr3_1:87405965-87405984 Msa0384360:CDS 45.0%
CTGGACGGAACTCTTATTGT+GGG + chr3_1:87406255-87406274 None:intergenic 45.0%
!! AATAAAAAATAAAAAAACAA+TGG - chr3_1:87404966-87404985 Msa0384360:CDS 5.0%
!! ATAAAAAATAAAAAAACAAT+GGG - chr3_1:87404967-87404986 Msa0384360:CDS 5.0%
!! AATAAAAAATAAAAAAACAA+TGG - chr3_1:87404966-87404985 Msa0384360:CDS 5.0%
!! ATAAAAAATAAAAAAACAAT+GGG - chr3_1:87404967-87404986 Msa0384360:CDS 5.0%
AACAACAACGAGGAGAGGAC+AGG - chr3_1:87404161-87404180 Msa0384360:three_prime_UTR 50.0%
CAGTGTGGAATGGCTTCTGA+CGG - chr3_1:87404262-87404281 Msa0384360:three_prime_UTR 50.0%
TTCTGACGGAGCAACTTCAG+CGG - chr3_1:87404276-87404295 Msa0384360:exon 50.0%
ACAACAGGAGGAGAGAGAGA+CGG - chr3_1:87404341-87404360 Msa0384360:CDS 50.0%
TTACGCGGGATTAAGGTCTC+AGG - chr3_1:87404387-87404406 Msa0384360:CDS 50.0%
TACGCGGGATTAAGGTCTCA+GGG - chr3_1:87404388-87404407 Msa0384360:CDS 50.0%
CTCTTTGTGCTGAAGCTGGT+TGG - chr3_1:87404458-87404477 Msa0384360:CDS 50.0%
AAGATGGCACCACTTATCGC+AGG - chr3_1:87404491-87404510 Msa0384360:CDS 50.0%
AGATGGCACCACTTATCGCA+GGG - chr3_1:87404492-87404511 Msa0384360:CDS 50.0%
TGGTAGGAAGGGATTGGACT+TGG + chr3_1:87405417-87405436 None:intergenic 50.0%
!! GATGGGCTAACTTGGTAGGA+AGG + chr3_1:87405429-87405448 None:intergenic 50.0%
!! GGAAGATGGGCTAACTTGGT+AGG + chr3_1:87405433-87405452 None:intergenic 50.0%
AAGGTGGGAGAGACATGTTG+GGG + chr3_1:87405533-87405552 None:intergenic 50.0%
CAAAGGTGGGAGAGACATGT+TGG + chr3_1:87405535-87405554 None:intergenic 50.0%
GAAGGATGTCCCTGATGCTT+TGG + chr3_1:87405649-87405668 None:intergenic 50.0%
GTATAAAGGTTCCGGTGGGA+TGG + chr3_1:87405708-87405727 None:intergenic 50.0%
GTGGTGTATAAAGGTTCCGG+TGG + chr3_1:87405713-87405732 None:intergenic 50.0%
CTACTGTTGAGTCTGGCCAA+TGG - chr3_1:87405766-87405785 Msa0384360:intron 50.0%
TAGCAGAAGCTGCAAAGGCT+TGG + chr3_1:87405800-87405819 None:intergenic 50.0%
GCTGCCTCATAACAGAATGC+AGG - chr3_1:87405878-87405897 Msa0384360:CDS 50.0%
TGAATCCTTTCCCCAACCCA+AGG + chr3_1:87405945-87405964 None:intergenic 50.0%
CCTGGACGGAACTCTTATTG+TGG + chr3_1:87406256-87406275 None:intergenic 50.0%
CCACAATAAGAGTTCCGTCC+AGG - chr3_1:87406253-87406272 Msa0384360:five_prime_UTR 50.0%
AACAACAACGAGGAGAGGAC+AGG - chr3_1:87404161-87404180 Msa0384360:three_prime_UTR 50.0%
CAGTGTGGAATGGCTTCTGA+CGG - chr3_1:87404262-87404281 Msa0384360:three_prime_UTR 50.0%
TTCTGACGGAGCAACTTCAG+CGG - chr3_1:87404276-87404295 Msa0384360:exon 50.0%
ACAACAGGAGGAGAGAGAGA+CGG - chr3_1:87404341-87404360 Msa0384360:CDS 50.0%
TTACGCGGGATTAAGGTCTC+AGG - chr3_1:87404387-87404406 Msa0384360:CDS 50.0%
TACGCGGGATTAAGGTCTCA+GGG - chr3_1:87404388-87404407 Msa0384360:CDS 50.0%
CTCTTTGTGCTGAAGCTGGT+TGG - chr3_1:87404458-87404477 Msa0384360:CDS 50.0%
AAGATGGCACCACTTATCGC+AGG - chr3_1:87404491-87404510 Msa0384360:CDS 50.0%
AGATGGCACCACTTATCGCA+GGG - chr3_1:87404492-87404511 Msa0384360:CDS 50.0%
TGGTAGGAAGGGATTGGACT+TGG + chr3_1:87405417-87405436 None:intergenic 50.0%
!! GATGGGCTAACTTGGTAGGA+AGG + chr3_1:87405429-87405448 None:intergenic 50.0%
!! GGAAGATGGGCTAACTTGGT+AGG + chr3_1:87405433-87405452 None:intergenic 50.0%
AAGGTGGGAGAGACATGTTG+GGG + chr3_1:87405533-87405552 None:intergenic 50.0%
CAAAGGTGGGAGAGACATGT+TGG + chr3_1:87405535-87405554 None:intergenic 50.0%
GAAGGATGTCCCTGATGCTT+TGG + chr3_1:87405649-87405668 None:intergenic 50.0%
GTATAAAGGTTCCGGTGGGA+TGG + chr3_1:87405708-87405727 None:intergenic 50.0%
GTGGTGTATAAAGGTTCCGG+TGG + chr3_1:87405713-87405732 None:intergenic 50.0%
CTACTGTTGAGTCTGGCCAA+TGG - chr3_1:87405766-87405785 Msa0384360:intron 50.0%
TAGCAGAAGCTGCAAAGGCT+TGG + chr3_1:87405800-87405819 None:intergenic 50.0%
GCTGCCTCATAACAGAATGC+AGG - chr3_1:87405878-87405897 Msa0384360:CDS 50.0%
TGAATCCTTTCCCCAACCCA+AGG + chr3_1:87405945-87405964 None:intergenic 50.0%
CCTGGACGGAACTCTTATTG+TGG + chr3_1:87406256-87406275 None:intergenic 50.0%
CCACAATAAGAGTTCCGTCC+AGG - chr3_1:87406253-87406272 Msa0384360:five_prime_UTR 50.0%
TCAGCTACGACGCAGTTCAG+AGG - chr3_1:87404234-87404253 Msa0384360:three_prime_UTR 55.0%
! AGTTCAGAGGTGCAGCAGTG+TGG - chr3_1:87404247-87404266 Msa0384360:three_prime_UTR 55.0%
! AGAGGTGCAGCAGTGTGGAA+TGG - chr3_1:87404252-87404271 Msa0384360:three_prime_UTR 55.0%
CAGCGGCGAATTCAAGTCGT+CGG - chr3_1:87404293-87404312 Msa0384360:exon 55.0%
TTCTCTCTCTCCCTCCACGA+CGG + chr3_1:87404322-87404341 None:intergenic 55.0%
GGAGGGAGAGAGAGAACAAC+AGG - chr3_1:87404326-87404345 Msa0384360:CDS 55.0%
GGGAGAGAGAGAACAACAGG+AGG - chr3_1:87404329-87404348 Msa0384360:CDS 55.0%
GAGACGGAGGAGAGCTATAG+CGG - chr3_1:87404357-87404376 Msa0384360:CDS 55.0%
ACGCGGGATTAAGGTCTCAG+GGG - chr3_1:87404389-87404408 Msa0384360:CDS 55.0%
GGATCAAGGGCAGAAACACC+AGG - chr3_1:87405318-87405337 Msa0384360:intron 55.0%
AAATTTCCTGCACCGTCGCC+TGG + chr3_1:87405339-87405358 None:intergenic 55.0%
! AGACGGGCTCGGAAATGAAG+AGG + chr3_1:87405454-87405473 None:intergenic 55.0%
ATTTCCGAGCCCGTCTCGTA+TGG - chr3_1:87405458-87405477 Msa0384360:intron 55.0%
GGGAACATGCTGCGAGCATA+TGG + chr3_1:87405513-87405532 None:intergenic 55.0%
GATGAGATAGGTGGCGTCAC+AGG + chr3_1:87405576-87405595 None:intergenic 55.0%
GCGCAGAAGCTGCGAAGAAA+GGG + chr3_1:87405677-87405696 None:intergenic 55.0%
!! TTCCGGTGGGATGGACTAGT+AGG + chr3_1:87405699-87405718 None:intergenic 55.0%
TTGACCTGCACCCCAAACTC+TGG + chr3_1:87405921-87405940 None:intergenic 55.0%
TGCAGGTCAAGCCTTGGGTT+GGG - chr3_1:87405931-87405950 Msa0384360:CDS 55.0%
!! TCAAGCCTTGGGTTGGGGAA+AGG - chr3_1:87405937-87405956 Msa0384360:CDS 55.0%
TCAGCTACGACGCAGTTCAG+AGG - chr3_1:87404234-87404253 Msa0384360:three_prime_UTR 55.0%
! AGTTCAGAGGTGCAGCAGTG+TGG - chr3_1:87404247-87404266 Msa0384360:three_prime_UTR 55.0%
! AGAGGTGCAGCAGTGTGGAA+TGG - chr3_1:87404252-87404271 Msa0384360:three_prime_UTR 55.0%
CAGCGGCGAATTCAAGTCGT+CGG - chr3_1:87404293-87404312 Msa0384360:exon 55.0%
TTCTCTCTCTCCCTCCACGA+CGG + chr3_1:87404322-87404341 None:intergenic 55.0%
GGAGGGAGAGAGAGAACAAC+AGG - chr3_1:87404326-87404345 Msa0384360:CDS 55.0%
GGGAGAGAGAGAACAACAGG+AGG - chr3_1:87404329-87404348 Msa0384360:CDS 55.0%
GAGACGGAGGAGAGCTATAG+CGG - chr3_1:87404357-87404376 Msa0384360:CDS 55.0%
ACGCGGGATTAAGGTCTCAG+GGG - chr3_1:87404389-87404408 Msa0384360:CDS 55.0%
GGATCAAGGGCAGAAACACC+AGG - chr3_1:87405318-87405337 Msa0384360:intron 55.0%
AAATTTCCTGCACCGTCGCC+TGG + chr3_1:87405339-87405358 None:intergenic 55.0%
! AGACGGGCTCGGAAATGAAG+AGG + chr3_1:87405454-87405473 None:intergenic 55.0%
ATTTCCGAGCCCGTCTCGTA+TGG - chr3_1:87405458-87405477 Msa0384360:intron 55.0%
GGGAACATGCTGCGAGCATA+TGG + chr3_1:87405513-87405532 None:intergenic 55.0%
GATGAGATAGGTGGCGTCAC+AGG + chr3_1:87405576-87405595 None:intergenic 55.0%
GCGCAGAAGCTGCGAAGAAA+GGG + chr3_1:87405677-87405696 None:intergenic 55.0%
!! TTCCGGTGGGATGGACTAGT+AGG + chr3_1:87405699-87405718 None:intergenic 55.0%
TTGACCTGCACCCCAAACTC+TGG + chr3_1:87405921-87405940 None:intergenic 55.0%
TGCAGGTCAAGCCTTGGGTT+GGG - chr3_1:87405931-87405950 Msa0384360:CDS 55.0%
!! TCAAGCCTTGGGTTGGGGAA+AGG - chr3_1:87405937-87405956 Msa0384360:CDS 55.0%
ACAGGAGGAGAGAGAGACGG+AGG - chr3_1:87404344-87404363 Msa0384360:CDS 60.0%
AGGGCAGAAACACCAGGCGA+CGG - chr3_1:87405324-87405343 Msa0384360:intron 60.0%
! GCATCCATACGAGACGGGCT+CGG + chr3_1:87405465-87405484 None:intergenic 60.0%
GGCGCAGAAGCTGCGAAGAA+AGG + chr3_1:87405678-87405697 None:intergenic 60.0%
CGCCTACTAGTCCATCCCAC+CGG - chr3_1:87405694-87405713 Msa0384360:intron 60.0%
! AGAGCCAGAGTTTGGGGTGC+AGG - chr3_1:87405914-87405933 Msa0384360:CDS 60.0%
TTGGGGTGCAGGTCAAGCCT+TGG - chr3_1:87405925-87405944 Msa0384360:CDS 60.0%
TGGGGTGCAGGTCAAGCCTT+GGG - chr3_1:87405926-87405945 Msa0384360:CDS 60.0%
GTGCAGGTCAAGCCTTGGGT+TGG - chr3_1:87405930-87405949 Msa0384360:CDS 60.0%
! GCAGGTCAAGCCTTGGGTTG+GGG - chr3_1:87405932-87405951 Msa0384360:CDS 60.0%
ACAGGAGGAGAGAGAGACGG+AGG - chr3_1:87404344-87404363 Msa0384360:CDS 60.0%
AGGGCAGAAACACCAGGCGA+CGG - chr3_1:87405324-87405343 Msa0384360:intron 60.0%
! GCATCCATACGAGACGGGCT+CGG + chr3_1:87405465-87405484 None:intergenic 60.0%
GGCGCAGAAGCTGCGAAGAA+AGG + chr3_1:87405678-87405697 None:intergenic 60.0%
CGCCTACTAGTCCATCCCAC+CGG - chr3_1:87405694-87405713 Msa0384360:intron 60.0%
! AGAGCCAGAGTTTGGGGTGC+AGG - chr3_1:87405914-87405933 Msa0384360:CDS 60.0%
TTGGGGTGCAGGTCAAGCCT+TGG - chr3_1:87405925-87405944 Msa0384360:CDS 60.0%
TGGGGTGCAGGTCAAGCCTT+GGG - chr3_1:87405926-87405945 Msa0384360:CDS 60.0%
GTGCAGGTCAAGCCTTGGGT+TGG - chr3_1:87405930-87405949 Msa0384360:CDS 60.0%
! GCAGGTCAAGCCTTGGGTTG+GGG - chr3_1:87405932-87405951 Msa0384360:CDS 60.0%
CAAGTCGTCGGAAGCCGTCG+TGG - chr3_1:87404305-87404324 Msa0384360:CDS 65.0%
TCGTCGGAAGCCGTCGTGGA+GGG - chr3_1:87404309-87404328 Msa0384360:CDS 65.0%
GAAACACCAGGCGACGGTGC+AGG - chr3_1:87405330-87405349 Msa0384360:intron 65.0%
CAAGTCGTCGGAAGCCGTCG+TGG - chr3_1:87404305-87404324 Msa0384360:CDS 65.0%
TCGTCGGAAGCCGTCGTGGA+GGG - chr3_1:87404309-87404328 Msa0384360:CDS 65.0%
GAAACACCAGGCGACGGTGC+AGG - chr3_1:87405330-87405349 Msa0384360:intron 65.0%
GTCGTCGGAAGCCGTCGTGG+AGG - chr3_1:87404308-87404327 Msa0384360:CDS 70.0%
GTCGTCGGAAGCCGTCGTGG+AGG - chr3_1:87404308-87404327 Msa0384360:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87404001 87406315 87404001 ID=Msa0384360;Name=Msa0384360
chr3_1 mRNA 87404001 87406315 87404001 ID=Msa0384360-mRNA-1;Parent=Msa0384360;Name=Msa0384360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=270|1|1|1|1|1|2|293|315
chr3_1 exon 87404001 87404998 87404001 ID=Msa0384360-mRNA-1:exon:23415;Parent=Msa0384360-mRNA-1
chr3_1 exon 87405803 87406315 87405803 ID=Msa0384360-mRNA-1:exon:23414;Parent=Msa0384360-mRNA-1
chr3_1 five_prime_UTR 87406046 87406315 87406046 ID=Msa0384360-mRNA-1:five_prime_utr;Parent=Msa0384360-mRNA-1
chr3_1 CDS 87405803 87406045 87405803 ID=Msa0384360-mRNA-1:cds;Parent=Msa0384360-mRNA-1
chr3_1 CDS 87404294 87404998 87404294 ID=Msa0384360-mRNA-1:cds;Parent=Msa0384360-mRNA-1
chr3_1 three_prime_UTR 87404001 87404293 87404001 ID=Msa0384360-mRNA-1:three_prime_utr;Parent=Msa0384360-mRNA-1
Gene Sequence

>Msa0384360

ATGGCTTCTGACGGAGCAACTTCAGCGGCGAATTCAAGTCGTCGGAAGCCGTCGTGGAGGGAGAGAGAGAACAACAGGAGGAGAGAGAGACGGAGGAGAGCTATAGCGGCAAAGATTTACGCGGGATTAAGGTCTCAGGGGAATTATAATTTACCAAAACACTGTGATAACAATGAGGTCTTGAAAGCTCTTTGTGCTGAAGCTGGTTGGACTGTTGAAGAAGATGGCACCACTTATCGCAGGGGATCAAGGGCAGAAACACCAGGCGACGGTGCAGGAAATTTTAACAGAAACAACCCATTTTCATCTCAAAATCCAAGTCCTCTTTCATCATCATTTCCAAGTCCAATCCCTTCCTACCAAGTTAGCCCATCTTCCTCTTCATTTCCGAGCCCGTCTCGTATGGATGCAAACAACAATGCATCAAATTACATTCCATATGCTCGCAGCATGTTCCCCAACATGTCTCTCCCACCTTTGAGAATATCAAACAGCGCGCCTGTGACGCCACCTATCTCATCACCAACTTCAAGAAATCCCAAACCCATGATTCCAACATGGGAATCAATTGCCAAAGCATCAGGGACATCCTTCAATCACCCTTTCTTCGCAGCTTCTGCGCCTACTAGTCCATCCCACCGGAACCTTTATACACCACCTACTATTCCTGAATGTGATGAGTCTGATACTTCTACTGTTGAGTCTGGCCAATGGTTGAATTTCCAAGCCTTTGCAGCTTCTGCTAAATCAGTCTCTCCTACATTGAACTTTATGAAACCTGTAATTAATGAGCAGCATAACATGCTGCCTCATAACAGAATGCAGGAGATGAGGATTTCAGAGCCAGAGTTTGGGGTGCAGGTCAAGCCTTGGGTTGGGGAAAGGATTCATGAAGTGGGCTTGGATGATTTGGAGCTTACTCTTGGAAATGGAAAGGCACCTAGTTAA
Protein sequence

>Msa0384360

MASDGATSAANSSRRKPSWRERENNRRRERRRRAIAAKIYAGLRSQGNYNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRRGSRAETPGDGAGNFNRNNPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRMDANNNASNYIPYARSMFPNMSLPPLRISNSAPVTPPISSPTSRNPKPMIPTWESIAKASGTSFNHPFFAASAPTSPSHRNLYTPPTIPECDESDTSTVESGQWLNFQAFAASAKSVSPTLNFMKPVINEQHNMLPHNRMQEMRISEPEFGVQVKPWVGERIHEVGLDDLELTLGNGKAPS*