AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0478640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478640 MtrunA17_Chr3g0141401 99.048 315 3 0 1 315 1 315 0.0 638
Msa0478640 MtrunA17_Chr1g0154651 47.284 313 99 7 1 313 1 247 1.85e-81 247
Msa0478640 MtrunA17_Chr5g0403631 54.908 326 123 8 8 313 2 323 1.00e-74 232
Msa0478640 MtrunA17_Chr2g0315211 43.155 336 139 15 12 312 3 321 1.24e-33 125
Msa0478640 MtrunA17_Chr2g0315201 41.246 337 137 10 12 312 3 314 5.77e-32 121
Msa0478640 MtrunA17_Chr5g0408851 57.143 56 24 0 26 81 61 116 2.80e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478640 AT1G75080.2 65.094 318 88 10 14 313 22 334 3.83e-110 323
Msa0478640 AT1G75080.1 65.094 318 88 10 14 313 22 334 3.83e-110 323
Msa0478640 AT1G19350.3 64.375 320 91 9 14 315 43 357 3.55e-109 322
Msa0478640 AT1G19350.5 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0478640 AT1G19350.1 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0478640 AT1G19350.6 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0478640 AT1G19350.4 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0478640 AT3G50750.1 53.376 311 100 8 2 310 3 270 9.76e-71 221
Msa0478640 AT4G36780.1 58.794 199 75 3 15 209 16 211 1.82e-44 153
Msa0478640 AT1G78700.1 39.773 352 126 13 12 310 3 321 3.69e-37 135
Msa0478640 AT4G18890.1 41.720 314 136 13 12 312 3 282 2.25e-29 114
Msa0478640 AT2G45880.1 45.455 88 48 0 1 88 55 142 9.02e-15 75.5
Msa0478640 AT5G45300.2 57.143 56 24 0 26 81 97 152 1.62e-13 71.6
Msa0478640 AT5G45300.3 57.143 56 24 0 26 81 111 166 1.66e-13 71.6
Msa0478640 AT5G45300.1 57.143 56 24 0 26 81 97 152 1.66e-13 71.6

Find 130 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGGACGGAACTCTTATTT+TGG 0.091564 3_3:-83483896 None:intergenic
TGCAGGTCAAGCCTTGGGTT+GGG 0.244939 3_3:+83483577 Msa0478640:CDS
TAATAATCCTTTAAAATCTA+TGG 0.260043 3_3:+83483869 Msa0478640:three_prime_UTR
TTATGCTGCTCATTAATTAC+AGG 0.267539 3_3:-83483498 None:intergenic
CAAAGATTTACGCGGGATTA+AGG 0.278250 3_3:+83482026 Msa0478640:CDS
TGAAGTGGGCTTGGATGATT+TGG 0.316017 3_3:+83483611 Msa0478640:CDS
AGGATTTCAGAGCCAGAGTT+TGG 0.317045 3_3:+83483552 Msa0478640:CDS
CCATGTTGGAATCATGGGTT+TGG 0.326849 3_3:-83483259 None:intergenic
CATGTTGGAATCATGGGTTT+GGG 0.346172 3_3:-83483258 None:intergenic
ACAAGAACAACAGTAGTATA+AGG 0.369884 3_3:+83481752 Msa0478640:five_prime_UTR
AAGAGAATAAATGAGAGTTC+TGG 0.370557 3_3:-83483734 None:intergenic
TCATTGTTATCACAGTGTTT+TGG 0.378019 3_3:-83482070 None:intergenic
GAATCAATTGCCAAAGCATC+AGG 0.379878 3_3:+83483282 Msa0478640:CDS
AGTTAATGAAGACTAGTATA+TGG 0.383852 3_3:+83483663 Msa0478640:exon
GTGCAGGTCAAGCCTTGGGT+TGG 0.384192 3_3:+83483576 Msa0478640:CDS
GGATTTCAGAGCCAGAGTTT+GGG 0.385062 3_3:+83483553 Msa0478640:CDS
TTGGAGCTTACTCTTGGAAA+TGG 0.386518 3_3:+83483630 Msa0478640:CDS
TGGGGTGCAGGTCAAGCCTT+GGG 0.386786 3_3:+83483572 Msa0478640:CDS
TGATTCCCATGTTGGAATCA+TGG 0.387349 3_3:-83483265 None:intergenic
TTGGGGTGCAGGTCAAGCCT+TGG 0.395856 3_3:+83483571 Msa0478640:CDS
AGAGCCAGAGTTTGGGGTGC+AGG 0.400385 3_3:+83483560 Msa0478640:CDS
GAATAGTAGGTGGTGTATAA+AGG 0.410535 3_3:-83483365 None:intergenic
GATGATTTGGAGCTTACTCT+TGG 0.411343 3_3:+83483624 Msa0478640:CDS
GGCGCAGAAGCTGCGAAGAA+AGG 0.412024 3_3:-83483321 None:intergenic
GTATCAGACTCATCACATTC+AGG 0.421362 3_3:-83483387 None:intergenic
CTTGAAGTTGGTGATGAGAT+AGG 0.423563 3_3:-83483231 None:intergenic
GGGAACATGCTGCGAGCATA+TGG 0.428278 3_3:-83483156 None:intergenic
AAGGATTCATGAAGTGGGCT+TGG 0.442178 3_3:+83483602 Msa0478640:CDS
GCAGGTCAAGCCTTGGGTTG+GGG 0.445549 3_3:+83483578 Msa0478640:CDS
GAAACACCAGGCGACGGTGC+AGG 0.453828 3_3:+83482976 Msa0478640:CDS
GGAGGGAGAGAGAGAACAAC+AGG 0.454864 3_3:+83481972 Msa0478640:CDS
GAAGGATGTCCCTGATGCTT+TGG 0.455024 3_3:-83483292 None:intergenic
TAGGTGGTGTATAAAGGTTC+CGG 0.456174 3_3:-83483359 None:intergenic
TCATCACATTCAGGAATAGT+AGG 0.457941 3_3:-83483378 None:intergenic
ATTTCCGAGCCCGTCTCGTA+TGG 0.458323 3_3:+83483104 Msa0478640:CDS
AAGAGGAAGATGGGCTAACT+TGG 0.459342 3_3:-83483080 None:intergenic
TTACGCGGGATTAAGGTCTC+AGG 0.461228 3_3:+83482033 Msa0478640:CDS
AAATTTCCTGCACCGTCGCC+TGG 0.461316 3_3:-83482982 None:intergenic
AAAGCTCTTTGTGCTGAAGC+TGG 0.466712 3_3:+83482100 Msa0478640:CDS
CAAAGGTGGGAGAGACATGT+TGG 0.476794 3_3:-83483178 None:intergenic
TGAACACTGAACAGGGATCA+AGG 0.477060 3_3:+83482950 Msa0478640:intron
GATTCCCATGTTGGAATCAT+GGG 0.479782 3_3:-83483264 None:intergenic
GATACTTCTACTGTTGAGTC+TGG 0.480255 3_3:+83483405 Msa0478640:CDS
TAGCAGAAGCTGCAAAGGCT+TGG 0.482094 3_3:-83483443 None:intergenic
TCAAGCCTTGGGTTGGGGAA+AGG 0.483086 3_3:+83483583 Msa0478640:CDS
GCATCCATACGAGACGGGCT+CGG 0.486953 3_3:-83483108 None:intergenic
TGGTAGGAAGGGATTGGACT+TGG 0.487033 3_3:-83483060 None:intergenic
AATGATGATGAAAGAGGACT+TGG 0.489656 3_3:-83483036 None:intergenic
TTGGCAATTGATTCCCATGT+TGG 0.490224 3_3:-83483273 None:intergenic
ATCTCCTGCATTCTGTTATG+AGG 0.491673 3_3:-83483528 None:intergenic
CTCTTTGTGCTGAAGCTGGT+TGG 0.493463 3_3:+83482104 Msa0478640:CDS
TTGACCTGCACCCCAAACTC+TGG 0.493982 3_3:-83483564 None:intergenic
GCGCAGAAGCTGCGAAGAAA+GGG 0.494226 3_3:-83483320 None:intergenic
AAAGGTGGGAGAGACATGTT+GGG 0.494510 3_3:-83483177 None:intergenic
GGTTTGGGATTTCTTGAAGT+TGG 0.496117 3_3:-83483243 None:intergenic
AGGCTTGGAAATTCAACCAT+TGG 0.499150 3_3:-83483428 None:intergenic
CCAAAATAAGAGTTCCGTCC+AGG 0.499282 3_3:+83483896 Msa0478640:three_prime_UTR
GGTTTCATAAAGTTCAATGT+AGG 0.500604 3_3:-83483477 None:intergenic
CTCGGAAATGAAGAGGAAGA+TGG 0.501823 3_3:-83483090 None:intergenic
GATGGGCTAACTTGGTAGGA+AGG 0.510153 3_3:-83483072 None:intergenic
ACTCTCATTACAAGTTTACC+TGG 0.512143 3_3:-83483914 None:intergenic
TAAAAGTACCCTGCGATAAG+TGG 0.514725 3_3:-83482146 None:intergenic
TGCGAAGAAAGGGTGATTGA+AGG 0.517777 3_3:-83483310 None:intergenic
GGCTTCTGACGGAGCAACTT+CGG 0.519371 3_3:+83481919 Msa0478640:CDS
GATGAGATAGGTGGCGTCAC+AGG 0.527145 3_3:-83483219 None:intergenic
CTAACTTGGTAGGAAGGGAT+TGG 0.532618 3_3:-83483066 None:intergenic
TGATTTAGCAGAAGCTGCAA+AGG 0.535526 3_3:-83483448 None:intergenic
TGTTTGCATCCATACGAGAC+GGG 0.538446 3_3:-83483113 None:intergenic
CTGTTTGATATTCTCAAAGG+TGG 0.543504 3_3:-83483192 None:intergenic
TTCCGGTGGGATGGACTAGT+AGG 0.544807 3_3:-83483342 None:intergenic
GTATAAAGGTTCCGGTGGGA+TGG 0.546631 3_3:-83483351 None:intergenic
TGAATCCTTTCCCCAACCCA+AGG 0.565111 3_3:-83483588 None:intergenic
AAGATGGCACCACTTATCGC+AGG 0.566281 3_3:+83482137 Msa0478640:CDS
GGTTGGACAGTTGAAGAAGA+TGG 0.566419 3_3:+83482121 Msa0478640:CDS
GGATCAAGGGCAGAAACACC+AGG 0.568579 3_3:+83482964 Msa0478640:CDS
TCGTCGGAAGCCGTCGTGGA+GGG 0.569962 3_3:+83481955 Msa0478640:CDS
GGAAGATGGGCTAACTTGGT+AGG 0.570068 3_3:-83483076 None:intergenic
AACAACAACGAGGAGAGGAC+AGG 0.573582 3_3:+83481807 Msa0478640:five_prime_UTR
ATGGGCTAACTTGGTAGGAA+GGG 0.578259 3_3:-83483071 None:intergenic
CCAAACCCATGATTCCAACA+TGG 0.578571 3_3:+83483259 Msa0478640:CDS
AGAGGTGCAGCAGTGTGGAA+TGG 0.578750 3_3:+83481898 Msa0478640:exon
TACGCGGGATTAAGGTCTCA+GGG 0.579295 3_3:+83482034 Msa0478640:CDS
CTACTGTTGAGTCTGGCCAA+TGG 0.579821 3_3:+83483412 Msa0478640:CDS
TTGTTTGCATCCATACGAGA+CGG 0.580413 3_3:-83483114 None:intergenic
CTTGGAAATGATGATGAAAG+AGG 0.585676 3_3:-83483042 None:intergenic
TATACTAGTCTTCATTAACT+AGG 0.587526 3_3:-83483660 None:intergenic
TCGGAAATGAAGAGGAAGAT+GGG 0.591259 3_3:-83483089 None:intergenic
GAACACTGAACAGGGATCAA+GGG 0.592233 3_3:+83482951 Msa0478640:intron
GCTGCCTCATAACAGAATGC+AGG 0.597111 3_3:+83483524 Msa0478640:CDS
GATTTCAGAGCCAGAGTTTG+GGG 0.597331 3_3:+83483554 Msa0478640:CDS
AAGACGGAGGAGAGCTATAG+CGG 0.598645 3_3:+83482003 Msa0478640:CDS
GTGGTGTATAAAGGTTCCGG+TGG 0.599334 3_3:-83483356 None:intergenic
TGGGGAAAGGATTCATGAAG+TGG 0.599526 3_3:+83483596 Msa0478640:CDS
GCGCTGTTTGATATTCTCAA+AGG 0.602416 3_3:-83483195 None:intergenic
TCATTACAAGTTTACCTGGA+CGG 0.603161 3_3:-83483910 None:intergenic
ACAACAGGAGGAGAGAAAGA+CGG 0.605859 3_3:+83481987 Msa0478640:CDS
CAGTGTGGAATGGCTTCTGA+CGG 0.605971 3_3:+83481908 Msa0478640:exon
TTGTAATGAGAGTGTAATGA+CGG 0.606652 3_3:+83483924 Msa0478640:three_prime_UTR
GTCGTCGGAAGCCGTCGTGG+AGG 0.608313 3_3:+83481954 Msa0478640:CDS
CGCCTACTAGTCCATCCCAC+CGG 0.608831 3_3:+83483340 Msa0478640:CDS
TGTTTGATATTCTCAAAGGT+GGG 0.611100 3_3:-83483191 None:intergenic
ATAACAGAATGCAGGAGATG+AGG 0.612424 3_3:+83483532 Msa0478640:CDS
AGGGCAGAAACACCAGGCGA+CGG 0.612624 3_3:+83482970 Msa0478640:CDS
TTCTCTCTCTCCCTCCACGA+CGG 0.613396 3_3:-83481965 None:intergenic
CAAACCCATGATTCCAACAT+GGG 0.619565 3_3:+83483260 Msa0478640:CDS
AGACGGGCTCGGAAATGAAG+AGG 0.620195 3_3:-83483097 None:intergenic
AATTGAACAACAACGAGGAG+AGG 0.620364 3_3:+83481802 Msa0478640:five_prime_UTR
CGGCGGCGAATTCAAGTCGT+CGG 0.624367 3_3:+83481939 Msa0478640:CDS
GCTTACTCTTGGAAATGGAA+AGG 0.624748 3_3:+83483635 Msa0478640:CDS
CAAGTCGTCGGAAGCCGTCG+TGG 0.626877 3_3:+83481951 Msa0478640:CDS
GGGGAAAGGATTCATGAAGT+GGG 0.628370 3_3:+83483597 Msa0478640:CDS
TCAGCTACGACGCAGTTCAG+AGG 0.629961 3_3:+83481880 Msa0478640:five_prime_UTR
GGGAGAGAGAGAACAACAGG+AGG 0.636818 3_3:+83481975 Msa0478640:CDS
ATAGCGGCAAAGATTTACGC+GGG 0.642415 3_3:+83482019 Msa0478640:CDS
AATCAATTGCCAAAGCATCA+GGG 0.645925 3_3:+83483283 Msa0478640:CDS
TGTAATGACGGAATGACCCA+TGG 0.646414 3_3:+83483936 Msa0478640:three_prime_UTR
TCACATTCAGGAATAGTAGG+TGG 0.669687 3_3:-83483375 None:intergenic
ACAGGAGGAGAGAAAGACGG+AGG 0.669701 3_3:+83481990 Msa0478640:CDS
AAAACACTGTGATAACAATG+AGG 0.672851 3_3:+83482072 Msa0478640:CDS
TTCTGACGGAGCAACTTCGG+CGG 0.678019 3_3:+83481922 Msa0478640:CDS
AGATGGCACCACTTATCGCA+GGG 0.680637 3_3:+83482138 Msa0478640:CDS
TGGTGTATAAAGGTTCCGGT+GGG 0.684999 3_3:-83483355 None:intergenic
AAATGAACTCACGAGGAATG+CGG 0.687204 3_3:-83481832 None:intergenic
GAGTAGTAAATGAACTCACG+AGG 0.700575 3_3:-83481839 None:intergenic
TATAGCGGCAAAGATTTACG+CGG 0.709001 3_3:+83482018 Msa0478640:CDS
AGTTCAGAGGTGCAGCAGTG+TGG 0.709625 3_3:+83481893 Msa0478640:five_prime_UTR
ACGCGGGATTAAGGTCTCAG+GGG 0.722971 3_3:+83482035 Msa0478640:CDS
AAGGTGGGAGAGACATGTTG+GGG 0.734444 3_3:-83483176 None:intergenic
GAAGTTGGTGATGAGATAGG+TGG 0.736539 3_3:-83483228 None:intergenic
TCATAAATTGAACAACAACG+AGG 0.799135 3_3:+83481797 Msa0478640:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTGAAGAAAGA+TGG - chr3_3:83482593-83482612 None:intergenic 15.0%
!! ATAGTAAAAATAAGTTCATT+AGG - chr3_3:83482807-83482826 None:intergenic 15.0%
!! TTGAATAAACAACTTAATTA+AGG - chr3_3:83482874-83482893 None:intergenic 15.0%
!!! TAATAATCCTTTAAAATCTA+TGG + chr3_3:83483869-83483888 Msa0478640:three_prime_UTR 15.0%
!!! TTTATTTTTTTGAAGAAAGA+TGG - chr3_3:83482593-83482612 None:intergenic 15.0%
!! ATAGTAAAAATAAGTTCATT+AGG - chr3_3:83482807-83482826 None:intergenic 15.0%
!! TTGAATAAACAACTTAATTA+AGG - chr3_3:83482874-83482893 None:intergenic 15.0%
!!! TAATAATCCTTTAAAATCTA+TGG + chr3_3:83483869-83483888 Msa0478640:three_prime_UTR 15.0%
!!! AGTTTTGATGAAATTTTGTT+TGG + chr3_3:83482299-83482318 Msa0478640:intron 20.0%
!! AATCTGAGTCAAATTAATTT+CGG + chr3_3:83482363-83482382 Msa0478640:intron 20.0%
!!! AGTTTTGATGAAATTTTGTT+TGG + chr3_3:83482299-83482318 Msa0478640:intron 20.0%
!! AATCTGAGTCAAATTAATTT+CGG + chr3_3:83482363-83482382 Msa0478640:intron 20.0%
!!! TTCTTGTTTTTTGTTTGGTT+TGG - chr3_3:83481739-83481758 None:intergenic 25.0%
!!! TGTTGTTCTTGTTTTTTGTT+TGG - chr3_3:83481744-83481763 None:intergenic 25.0%
!!! TGATGAAATTTTGTTTGGTT+TGG + chr3_3:83482304-83482323 Msa0478640:intron 25.0%
! AACTAGTAGTTGATTAATTG+AGG - chr3_3:83482400-83482419 None:intergenic 25.0%
! TTGAACAATCTAATCTGATT+TGG + chr3_3:83482662-83482681 Msa0478640:intron 25.0%
! TGAACAATCTAATCTGATTT+GGG + chr3_3:83482663-83482682 Msa0478640:intron 25.0%
!! TATCTGATAAGAATCTGTTT+TGG + chr3_3:83482903-83482922 Msa0478640:intron 25.0%
!!! TTGGATTTTGAGATGAAAAT+GGG - chr3_3:83483020-83483039 None:intergenic 25.0%
!!! TATACTAGTCTTCATTAACT+AGG - chr3_3:83483663-83483682 None:intergenic 25.0%
! AGTTAATGAAGACTAGTATA+TGG + chr3_3:83483663-83483682 Msa0478640:exon 25.0%
!!! TTCTTGTTTTTTGTTTGGTT+TGG - chr3_3:83481739-83481758 None:intergenic 25.0%
!!! TGTTGTTCTTGTTTTTTGTT+TGG - chr3_3:83481744-83481763 None:intergenic 25.0%
!!! TGATGAAATTTTGTTTGGTT+TGG + chr3_3:83482304-83482323 Msa0478640:intron 25.0%
! AACTAGTAGTTGATTAATTG+AGG - chr3_3:83482400-83482419 None:intergenic 25.0%
! TTGAACAATCTAATCTGATT+TGG + chr3_3:83482662-83482681 Msa0478640:intron 25.0%
! TGAACAATCTAATCTGATTT+GGG + chr3_3:83482663-83482682 Msa0478640:intron 25.0%
!! TATCTGATAAGAATCTGTTT+TGG + chr3_3:83482903-83482922 Msa0478640:intron 25.0%
!!! TTGGATTTTGAGATGAAAAT+GGG - chr3_3:83483020-83483039 None:intergenic 25.0%
!!! TATACTAGTCTTCATTAACT+AGG - chr3_3:83483663-83483682 None:intergenic 25.0%
! AGTTAATGAAGACTAGTATA+TGG + chr3_3:83483663-83483682 Msa0478640:exon 25.0%
! TGCTTTTCATGAAAGAAAAG+AGG - chr3_3:83481688-83481707 None:intergenic 30.0%
!!! GTTTTTTGTTTGGTTTGGTT+TGG - chr3_3:83481734-83481753 None:intergenic 30.0%
ACAAGAACAACAGTAGTATA+AGG + chr3_3:83481752-83481771 Msa0478640:five_prime_UTR 30.0%
TCATAAATTGAACAACAACG+AGG + chr3_3:83481797-83481816 Msa0478640:five_prime_UTR 30.0%
! TCATTGTTATCACAGTGTTT+TGG - chr3_3:83482073-83482092 None:intergenic 30.0%
AAAACACTGTGATAACAATG+AGG + chr3_3:83482072-83482091 Msa0478640:CDS 30.0%
!! TCTCTCTCACTTTTCTTTTT+TGG + chr3_3:83482171-83482190 Msa0478640:intron 30.0%
GATTCAAATCTTACTGCAAT+TGG + chr3_3:83482254-83482273 Msa0478640:intron 30.0%
TTCCTTTGACTGAAAATACA+AGG - chr3_3:83482337-83482356 None:intergenic 30.0%
! ATTTTCCAATGTGGCATAAT+TGG - chr3_3:83482524-83482543 None:intergenic 30.0%
TGATAGCATTTCATTTCACA+CGG - chr3_3:83482550-83482569 None:intergenic 30.0%
AAACAATGGGTAATCCTAAT+TGG + chr3_3:83482626-83482645 Msa0478640:intron 30.0%
!!! CTTGGATTTTGAGATGAAAA+TGG - chr3_3:83483021-83483040 None:intergenic 30.0%
TGTTTGATATTCTCAAAGGT+GGG - chr3_3:83483194-83483213 None:intergenic 30.0%
GGTTTCATAAAGTTCAATGT+AGG - chr3_3:83483480-83483499 None:intergenic 30.0%
TTATGCTGCTCATTAATTAC+AGG - chr3_3:83483501-83483520 None:intergenic 30.0%
ATAAAAATGCTCATAGCATC+TGG - chr3_3:83483695-83483714 None:intergenic 30.0%
AAGAGAATAAATGAGAGTTC+TGG - chr3_3:83483737-83483756 None:intergenic 30.0%
! TGGGTATCCATAGATTTTAA+AGG - chr3_3:83483879-83483898 None:intergenic 30.0%
! TTGTAATGAGAGTGTAATGA+CGG + chr3_3:83483924-83483943 Msa0478640:three_prime_UTR 30.0%
! TGCTTTTCATGAAAGAAAAG+AGG - chr3_3:83481688-83481707 None:intergenic 30.0%
!!! GTTTTTTGTTTGGTTTGGTT+TGG - chr3_3:83481734-83481753 None:intergenic 30.0%
ACAAGAACAACAGTAGTATA+AGG + chr3_3:83481752-83481771 Msa0478640:five_prime_UTR 30.0%
TCATAAATTGAACAACAACG+AGG + chr3_3:83481797-83481816 Msa0478640:five_prime_UTR 30.0%
! TCATTGTTATCACAGTGTTT+TGG - chr3_3:83482073-83482092 None:intergenic 30.0%
AAAACACTGTGATAACAATG+AGG + chr3_3:83482072-83482091 Msa0478640:CDS 30.0%
!! TCTCTCTCACTTTTCTTTTT+TGG + chr3_3:83482171-83482190 Msa0478640:intron 30.0%
GATTCAAATCTTACTGCAAT+TGG + chr3_3:83482254-83482273 Msa0478640:intron 30.0%
TTCCTTTGACTGAAAATACA+AGG - chr3_3:83482337-83482356 None:intergenic 30.0%
! ATTTTCCAATGTGGCATAAT+TGG - chr3_3:83482524-83482543 None:intergenic 30.0%
TGATAGCATTTCATTTCACA+CGG - chr3_3:83482550-83482569 None:intergenic 30.0%
AAACAATGGGTAATCCTAAT+TGG + chr3_3:83482626-83482645 Msa0478640:intron 30.0%
!!! CTTGGATTTTGAGATGAAAA+TGG - chr3_3:83483021-83483040 None:intergenic 30.0%
TGTTTGATATTCTCAAAGGT+GGG - chr3_3:83483194-83483213 None:intergenic 30.0%
GGTTTCATAAAGTTCAATGT+AGG - chr3_3:83483480-83483499 None:intergenic 30.0%
TTATGCTGCTCATTAATTAC+AGG - chr3_3:83483501-83483520 None:intergenic 30.0%
ATAAAAATGCTCATAGCATC+TGG - chr3_3:83483695-83483714 None:intergenic 30.0%
AAGAGAATAAATGAGAGTTC+TGG - chr3_3:83483737-83483756 None:intergenic 30.0%
! TGGGTATCCATAGATTTTAA+AGG - chr3_3:83483879-83483898 None:intergenic 30.0%
! TTGTAATGAGAGTGTAATGA+CGG + chr3_3:83483924-83483943 Msa0478640:three_prime_UTR 30.0%
TCTTCATATCTACGTACTGT+TGG + chr3_3:83482232-83482251 Msa0478640:intron 35.0%
CAAATCTTACTGCAATTGGT+TGG + chr3_3:83482258-83482277 Msa0478640:intron 35.0%
! TGCCTTGTATTTTCAGTCAA+AGG + chr3_3:83482332-83482351 Msa0478640:intron 35.0%
!! TTGCTGCTTTGTCCAATTTA+AGG + chr3_3:83482476-83482495 Msa0478640:intron 35.0%
! TGCTTTGTCCAATTTAAGGT+AGG + chr3_3:83482480-83482499 Msa0478640:intron 35.0%
CATAGACACCTACCTTAAAT+TGG - chr3_3:83482491-83482510 None:intergenic 35.0%
AATCAAACACAGCACCAATT+AGG - chr3_3:83482643-83482662 None:intergenic 35.0%
ATCAGTGATGTGTGACTATT+TGG + chr3_3:83482717-83482736 Msa0478640:intron 35.0%
TTTGTGAATGAACACTGAAC+AGG + chr3_3:83482942-83482961 Msa0478640:intron 35.0%
TTGTGAATGAACACTGAACA+GGG + chr3_3:83482943-83482962 Msa0478640:intron 35.0%
! AATGATGATGAAAGAGGACT+TGG - chr3_3:83483039-83483058 None:intergenic 35.0%
! CTTGGAAATGATGATGAAAG+AGG - chr3_3:83483045-83483064 None:intergenic 35.0%
CTGTTTGATATTCTCAAAGG+TGG - chr3_3:83483195-83483214 None:intergenic 35.0%
! AATCAATTGCCAAAGCATCA+GGG + chr3_3:83483283-83483302 Msa0478640:CDS 35.0%
GAATAGTAGGTGGTGTATAA+AGG - chr3_3:83483368-83483387 None:intergenic 35.0%
TCATCACATTCAGGAATAGT+AGG - chr3_3:83483381-83483400 None:intergenic 35.0%
TCATTACAAGTTTACCTGGA+CGG - chr3_3:83483913-83483932 None:intergenic 35.0%
ACTCTCATTACAAGTTTACC+TGG - chr3_3:83483917-83483936 None:intergenic 35.0%
TCTTCATATCTACGTACTGT+TGG + chr3_3:83482232-83482251 Msa0478640:intron 35.0%
CAAATCTTACTGCAATTGGT+TGG + chr3_3:83482258-83482277 Msa0478640:intron 35.0%
! TGCCTTGTATTTTCAGTCAA+AGG + chr3_3:83482332-83482351 Msa0478640:intron 35.0%
!! TTGCTGCTTTGTCCAATTTA+AGG + chr3_3:83482476-83482495 Msa0478640:intron 35.0%
! TGCTTTGTCCAATTTAAGGT+AGG + chr3_3:83482480-83482499 Msa0478640:intron 35.0%
CATAGACACCTACCTTAAAT+TGG - chr3_3:83482491-83482510 None:intergenic 35.0%
AATCAAACACAGCACCAATT+AGG - chr3_3:83482643-83482662 None:intergenic 35.0%
ATCAGTGATGTGTGACTATT+TGG + chr3_3:83482717-83482736 Msa0478640:intron 35.0%
TTTGTGAATGAACACTGAAC+AGG + chr3_3:83482942-83482961 Msa0478640:intron 35.0%
TTGTGAATGAACACTGAACA+GGG + chr3_3:83482943-83482962 Msa0478640:intron 35.0%
! AATGATGATGAAAGAGGACT+TGG - chr3_3:83483039-83483058 None:intergenic 35.0%
! CTTGGAAATGATGATGAAAG+AGG - chr3_3:83483045-83483064 None:intergenic 35.0%
CTGTTTGATATTCTCAAAGG+TGG - chr3_3:83483195-83483214 None:intergenic 35.0%
! AATCAATTGCCAAAGCATCA+GGG + chr3_3:83483283-83483302 Msa0478640:CDS 35.0%
GAATAGTAGGTGGTGTATAA+AGG - chr3_3:83483368-83483387 None:intergenic 35.0%
TCATCACATTCAGGAATAGT+AGG - chr3_3:83483381-83483400 None:intergenic 35.0%
TCATTACAAGTTTACCTGGA+CGG - chr3_3:83483913-83483932 None:intergenic 35.0%
ACTCTCATTACAAGTTTACC+TGG - chr3_3:83483917-83483936 None:intergenic 35.0%
AATTGAACAACAACGAGGAG+AGG + chr3_3:83481802-83481821 Msa0478640:five_prime_UTR 40.0%
AAATGAACTCACGAGGAATG+CGG - chr3_3:83481835-83481854 None:intergenic 40.0%
GAGTAGTAAATGAACTCACG+AGG - chr3_3:83481842-83481861 None:intergenic 40.0%
TATAGCGGCAAAGATTTACG+CGG + chr3_3:83482018-83482037 Msa0478640:CDS 40.0%
CAAAGATTTACGCGGGATTA+AGG + chr3_3:83482026-83482045 Msa0478640:CDS 40.0%
!! TAAAAGTACCCTGCGATAAG+TGG - chr3_3:83482149-83482168 None:intergenic 40.0%
TCCATCCAATTATGCCACAT+TGG + chr3_3:83482516-83482535 Msa0478640:intron 40.0%
TCCAATGTGGCATAATTGGA+TGG - chr3_3:83482520-83482539 None:intergenic 40.0%
! ACACGGAAGATTTTCCAATG+TGG - chr3_3:83482533-83482552 None:intergenic 40.0%
TCGGAAATGAAGAGGAAGAT+GGG - chr3_3:83483092-83483111 None:intergenic 40.0%
TTGTTTGCATCCATACGAGA+CGG - chr3_3:83483117-83483136 None:intergenic 40.0%
GCGCTGTTTGATATTCTCAA+AGG - chr3_3:83483198-83483217 None:intergenic 40.0%
!! CTTGAAGTTGGTGATGAGAT+AGG - chr3_3:83483234-83483253 None:intergenic 40.0%
! GGTTTGGGATTTCTTGAAGT+TGG - chr3_3:83483246-83483265 None:intergenic 40.0%
CATGTTGGAATCATGGGTTT+GGG - chr3_3:83483261-83483280 None:intergenic 40.0%
CAAACCCATGATTCCAACAT+GGG + chr3_3:83483260-83483279 Msa0478640:CDS 40.0%
GATTCCCATGTTGGAATCAT+GGG - chr3_3:83483267-83483286 None:intergenic 40.0%
TGATTCCCATGTTGGAATCA+TGG - chr3_3:83483268-83483287 None:intergenic 40.0%
! TTGGCAATTGATTCCCATGT+TGG - chr3_3:83483276-83483295 None:intergenic 40.0%
! GAATCAATTGCCAAAGCATC+AGG + chr3_3:83483282-83483301 Msa0478640:CDS 40.0%
TAGGTGGTGTATAAAGGTTC+CGG - chr3_3:83483362-83483381 None:intergenic 40.0%
TCACATTCAGGAATAGTAGG+TGG - chr3_3:83483378-83483397 None:intergenic 40.0%
GTATCAGACTCATCACATTC+AGG - chr3_3:83483390-83483409 None:intergenic 40.0%
GATACTTCTACTGTTGAGTC+TGG + chr3_3:83483405-83483424 Msa0478640:CDS 40.0%
AGGCTTGGAAATTCAACCAT+TGG - chr3_3:83483431-83483450 None:intergenic 40.0%
TGATTTAGCAGAAGCTGCAA+AGG - chr3_3:83483451-83483470 None:intergenic 40.0%
ATCTCCTGCATTCTGTTATG+AGG - chr3_3:83483531-83483550 None:intergenic 40.0%
ATAACAGAATGCAGGAGATG+AGG + chr3_3:83483532-83483551 Msa0478640:CDS 40.0%
! GATGATTTGGAGCTTACTCT+TGG + chr3_3:83483624-83483643 Msa0478640:CDS 40.0%
TTGGAGCTTACTCTTGGAAA+TGG + chr3_3:83483630-83483649 Msa0478640:CDS 40.0%
GCTTACTCTTGGAAATGGAA+AGG + chr3_3:83483635-83483654 Msa0478640:CDS 40.0%
!!! CTGGACGGAACTCTTATTTT+GGG - chr3_3:83483898-83483917 None:intergenic 40.0%
AATTGAACAACAACGAGGAG+AGG + chr3_3:83481802-83481821 Msa0478640:five_prime_UTR 40.0%
AAATGAACTCACGAGGAATG+CGG - chr3_3:83481835-83481854 None:intergenic 40.0%
GAGTAGTAAATGAACTCACG+AGG - chr3_3:83481842-83481861 None:intergenic 40.0%
TATAGCGGCAAAGATTTACG+CGG + chr3_3:83482018-83482037 Msa0478640:CDS 40.0%
CAAAGATTTACGCGGGATTA+AGG + chr3_3:83482026-83482045 Msa0478640:CDS 40.0%
!! TAAAAGTACCCTGCGATAAG+TGG - chr3_3:83482149-83482168 None:intergenic 40.0%
TCCATCCAATTATGCCACAT+TGG + chr3_3:83482516-83482535 Msa0478640:intron 40.0%
TCCAATGTGGCATAATTGGA+TGG - chr3_3:83482520-83482539 None:intergenic 40.0%
! ACACGGAAGATTTTCCAATG+TGG - chr3_3:83482533-83482552 None:intergenic 40.0%
TCGGAAATGAAGAGGAAGAT+GGG - chr3_3:83483092-83483111 None:intergenic 40.0%
TTGTTTGCATCCATACGAGA+CGG - chr3_3:83483117-83483136 None:intergenic 40.0%
GCGCTGTTTGATATTCTCAA+AGG - chr3_3:83483198-83483217 None:intergenic 40.0%
!! CTTGAAGTTGGTGATGAGAT+AGG - chr3_3:83483234-83483253 None:intergenic 40.0%
! GGTTTGGGATTTCTTGAAGT+TGG - chr3_3:83483246-83483265 None:intergenic 40.0%
CATGTTGGAATCATGGGTTT+GGG - chr3_3:83483261-83483280 None:intergenic 40.0%
CAAACCCATGATTCCAACAT+GGG + chr3_3:83483260-83483279 Msa0478640:CDS 40.0%
GATTCCCATGTTGGAATCAT+GGG - chr3_3:83483267-83483286 None:intergenic 40.0%
TGATTCCCATGTTGGAATCA+TGG - chr3_3:83483268-83483287 None:intergenic 40.0%
! TTGGCAATTGATTCCCATGT+TGG - chr3_3:83483276-83483295 None:intergenic 40.0%
! GAATCAATTGCCAAAGCATC+AGG + chr3_3:83483282-83483301 Msa0478640:CDS 40.0%
TAGGTGGTGTATAAAGGTTC+CGG - chr3_3:83483362-83483381 None:intergenic 40.0%
TCACATTCAGGAATAGTAGG+TGG - chr3_3:83483378-83483397 None:intergenic 40.0%
GTATCAGACTCATCACATTC+AGG - chr3_3:83483390-83483409 None:intergenic 40.0%
GATACTTCTACTGTTGAGTC+TGG + chr3_3:83483405-83483424 Msa0478640:CDS 40.0%
AGGCTTGGAAATTCAACCAT+TGG - chr3_3:83483431-83483450 None:intergenic 40.0%
TGATTTAGCAGAAGCTGCAA+AGG - chr3_3:83483451-83483470 None:intergenic 40.0%
ATCTCCTGCATTCTGTTATG+AGG - chr3_3:83483531-83483550 None:intergenic 40.0%
ATAACAGAATGCAGGAGATG+AGG + chr3_3:83483532-83483551 Msa0478640:CDS 40.0%
! GATGATTTGGAGCTTACTCT+TGG + chr3_3:83483624-83483643 Msa0478640:CDS 40.0%
TTGGAGCTTACTCTTGGAAA+TGG + chr3_3:83483630-83483649 Msa0478640:CDS 40.0%
GCTTACTCTTGGAAATGGAA+AGG + chr3_3:83483635-83483654 Msa0478640:CDS 40.0%
!!! CTGGACGGAACTCTTATTTT+GGG - chr3_3:83483898-83483917 None:intergenic 40.0%
ACAACAGGAGGAGAGAAAGA+CGG + chr3_3:83481987-83482006 Msa0478640:CDS 45.0%
ATAGCGGCAAAGATTTACGC+GGG + chr3_3:83482019-83482038 Msa0478640:CDS 45.0%
AAAGCTCTTTGTGCTGAAGC+TGG + chr3_3:83482100-83482119 Msa0478640:CDS 45.0%
GGTTGGACAGTTGAAGAAGA+TGG + chr3_3:83482121-83482140 Msa0478640:CDS 45.0%
TGAACACTGAACAGGGATCA+AGG + chr3_3:83482950-83482969 Msa0478640:intron 45.0%
GAACACTGAACAGGGATCAA+GGG + chr3_3:83482951-83482970 Msa0478640:intron 45.0%
CTAACTTGGTAGGAAGGGAT+TGG - chr3_3:83483069-83483088 None:intergenic 45.0%
! ATGGGCTAACTTGGTAGGAA+GGG - chr3_3:83483074-83483093 None:intergenic 45.0%
!! AAGAGGAAGATGGGCTAACT+TGG - chr3_3:83483083-83483102 None:intergenic 45.0%
CTCGGAAATGAAGAGGAAGA+TGG - chr3_3:83483093-83483112 None:intergenic 45.0%
TGTTTGCATCCATACGAGAC+GGG - chr3_3:83483116-83483135 None:intergenic 45.0%
AAAGGTGGGAGAGACATGTT+GGG - chr3_3:83483180-83483199 None:intergenic 45.0%
!! GAAGTTGGTGATGAGATAGG+TGG - chr3_3:83483231-83483250 None:intergenic 45.0%
CCATGTTGGAATCATGGGTT+TGG - chr3_3:83483262-83483281 None:intergenic 45.0%
CCAAACCCATGATTCCAACA+TGG + chr3_3:83483259-83483278 Msa0478640:CDS 45.0%
TGCGAAGAAAGGGTGATTGA+AGG - chr3_3:83483313-83483332 None:intergenic 45.0%
TGGTGTATAAAGGTTCCGGT+GGG - chr3_3:83483358-83483377 None:intergenic 45.0%
AGGATTTCAGAGCCAGAGTT+TGG + chr3_3:83483552-83483571 Msa0478640:CDS 45.0%
GGATTTCAGAGCCAGAGTTT+GGG + chr3_3:83483553-83483572 Msa0478640:CDS 45.0%
GATTTCAGAGCCAGAGTTTG+GGG + chr3_3:83483554-83483573 Msa0478640:CDS 45.0%
TGGGGAAAGGATTCATGAAG+TGG + chr3_3:83483596-83483615 Msa0478640:CDS 45.0%
GGGGAAAGGATTCATGAAGT+GGG + chr3_3:83483597-83483616 Msa0478640:CDS 45.0%
! AAGGATTCATGAAGTGGGCT+TGG + chr3_3:83483602-83483621 Msa0478640:CDS 45.0%
! TGAAGTGGGCTTGGATGATT+TGG + chr3_3:83483611-83483630 Msa0478640:CDS 45.0%
!! CCTGGACGGAACTCTTATTT+TGG - chr3_3:83483899-83483918 None:intergenic 45.0%
CCAAAATAAGAGTTCCGTCC+AGG + chr3_3:83483896-83483915 Msa0478640:three_prime_UTR 45.0%
! TGTAATGACGGAATGACCCA+TGG + chr3_3:83483936-83483955 Msa0478640:three_prime_UTR 45.0%
ACAACAGGAGGAGAGAAAGA+CGG + chr3_3:83481987-83482006 Msa0478640:CDS 45.0%
ATAGCGGCAAAGATTTACGC+GGG + chr3_3:83482019-83482038 Msa0478640:CDS 45.0%
AAAGCTCTTTGTGCTGAAGC+TGG + chr3_3:83482100-83482119 Msa0478640:CDS 45.0%
GGTTGGACAGTTGAAGAAGA+TGG + chr3_3:83482121-83482140 Msa0478640:CDS 45.0%
TGAACACTGAACAGGGATCA+AGG + chr3_3:83482950-83482969 Msa0478640:intron 45.0%
GAACACTGAACAGGGATCAA+GGG + chr3_3:83482951-83482970 Msa0478640:intron 45.0%
CTAACTTGGTAGGAAGGGAT+TGG - chr3_3:83483069-83483088 None:intergenic 45.0%
! ATGGGCTAACTTGGTAGGAA+GGG - chr3_3:83483074-83483093 None:intergenic 45.0%
!! AAGAGGAAGATGGGCTAACT+TGG - chr3_3:83483083-83483102 None:intergenic 45.0%
CTCGGAAATGAAGAGGAAGA+TGG - chr3_3:83483093-83483112 None:intergenic 45.0%
TGTTTGCATCCATACGAGAC+GGG - chr3_3:83483116-83483135 None:intergenic 45.0%
AAAGGTGGGAGAGACATGTT+GGG - chr3_3:83483180-83483199 None:intergenic 45.0%
!! GAAGTTGGTGATGAGATAGG+TGG - chr3_3:83483231-83483250 None:intergenic 45.0%
CCATGTTGGAATCATGGGTT+TGG - chr3_3:83483262-83483281 None:intergenic 45.0%
CCAAACCCATGATTCCAACA+TGG + chr3_3:83483259-83483278 Msa0478640:CDS 45.0%
TGCGAAGAAAGGGTGATTGA+AGG - chr3_3:83483313-83483332 None:intergenic 45.0%
TGGTGTATAAAGGTTCCGGT+GGG - chr3_3:83483358-83483377 None:intergenic 45.0%
AGGATTTCAGAGCCAGAGTT+TGG + chr3_3:83483552-83483571 Msa0478640:CDS 45.0%
GGATTTCAGAGCCAGAGTTT+GGG + chr3_3:83483553-83483572 Msa0478640:CDS 45.0%
GATTTCAGAGCCAGAGTTTG+GGG + chr3_3:83483554-83483573 Msa0478640:CDS 45.0%
TGGGGAAAGGATTCATGAAG+TGG + chr3_3:83483596-83483615 Msa0478640:CDS 45.0%
GGGGAAAGGATTCATGAAGT+GGG + chr3_3:83483597-83483616 Msa0478640:CDS 45.0%
! AAGGATTCATGAAGTGGGCT+TGG + chr3_3:83483602-83483621 Msa0478640:CDS 45.0%
! TGAAGTGGGCTTGGATGATT+TGG + chr3_3:83483611-83483630 Msa0478640:CDS 45.0%
!! CCTGGACGGAACTCTTATTT+TGG - chr3_3:83483899-83483918 None:intergenic 45.0%
CCAAAATAAGAGTTCCGTCC+AGG + chr3_3:83483896-83483915 Msa0478640:three_prime_UTR 45.0%
!! AATAAAAAATAAAAAAACAA+TGG + chr3_3:83482612-83482631 Msa0478640:intron 5.0%
!! ATAAAAAATAAAAAAACAAT+GGG + chr3_3:83482613-83482632 Msa0478640:intron 5.0%
!! AATAAAAAATAAAAAAACAA+TGG + chr3_3:83482612-83482631 Msa0478640:intron 5.0%
!! ATAAAAAATAAAAAAACAAT+GGG + chr3_3:83482613-83482632 Msa0478640:intron 5.0%
AACAACAACGAGGAGAGGAC+AGG + chr3_3:83481807-83481826 Msa0478640:five_prime_UTR 50.0%
CAGTGTGGAATGGCTTCTGA+CGG + chr3_3:83481908-83481927 Msa0478640:exon 50.0%
AAGACGGAGGAGAGCTATAG+CGG + chr3_3:83482003-83482022 Msa0478640:CDS 50.0%
TTACGCGGGATTAAGGTCTC+AGG + chr3_3:83482033-83482052 Msa0478640:CDS 50.0%
TACGCGGGATTAAGGTCTCA+GGG + chr3_3:83482034-83482053 Msa0478640:CDS 50.0%
CTCTTTGTGCTGAAGCTGGT+TGG + chr3_3:83482104-83482123 Msa0478640:CDS 50.0%
AAGATGGCACCACTTATCGC+AGG + chr3_3:83482137-83482156 Msa0478640:CDS 50.0%
AGATGGCACCACTTATCGCA+GGG + chr3_3:83482138-83482157 Msa0478640:CDS 50.0%
TGGTAGGAAGGGATTGGACT+TGG - chr3_3:83483063-83483082 None:intergenic 50.0%
!! GATGGGCTAACTTGGTAGGA+AGG - chr3_3:83483075-83483094 None:intergenic 50.0%
!! GGAAGATGGGCTAACTTGGT+AGG - chr3_3:83483079-83483098 None:intergenic 50.0%
AAGGTGGGAGAGACATGTTG+GGG - chr3_3:83483179-83483198 None:intergenic 50.0%
CAAAGGTGGGAGAGACATGT+TGG - chr3_3:83483181-83483200 None:intergenic 50.0%
GAAGGATGTCCCTGATGCTT+TGG - chr3_3:83483295-83483314 None:intergenic 50.0%
GTATAAAGGTTCCGGTGGGA+TGG - chr3_3:83483354-83483373 None:intergenic 50.0%
GTGGTGTATAAAGGTTCCGG+TGG - chr3_3:83483359-83483378 None:intergenic 50.0%
CTACTGTTGAGTCTGGCCAA+TGG + chr3_3:83483412-83483431 Msa0478640:CDS 50.0%
TAGCAGAAGCTGCAAAGGCT+TGG - chr3_3:83483446-83483465 None:intergenic 50.0%
GCTGCCTCATAACAGAATGC+AGG + chr3_3:83483524-83483543 Msa0478640:CDS 50.0%
TGAATCCTTTCCCCAACCCA+AGG - chr3_3:83483591-83483610 None:intergenic 50.0%
AACAACAACGAGGAGAGGAC+AGG + chr3_3:83481807-83481826 Msa0478640:five_prime_UTR 50.0%
CAGTGTGGAATGGCTTCTGA+CGG + chr3_3:83481908-83481927 Msa0478640:exon 50.0%
AAGACGGAGGAGAGCTATAG+CGG + chr3_3:83482003-83482022 Msa0478640:CDS 50.0%
TTACGCGGGATTAAGGTCTC+AGG + chr3_3:83482033-83482052 Msa0478640:CDS 50.0%
TACGCGGGATTAAGGTCTCA+GGG + chr3_3:83482034-83482053 Msa0478640:CDS 50.0%
CTCTTTGTGCTGAAGCTGGT+TGG + chr3_3:83482104-83482123 Msa0478640:CDS 50.0%
AAGATGGCACCACTTATCGC+AGG + chr3_3:83482137-83482156 Msa0478640:CDS 50.0%
AGATGGCACCACTTATCGCA+GGG + chr3_3:83482138-83482157 Msa0478640:CDS 50.0%
TGGTAGGAAGGGATTGGACT+TGG - chr3_3:83483063-83483082 None:intergenic 50.0%
!! GATGGGCTAACTTGGTAGGA+AGG - chr3_3:83483075-83483094 None:intergenic 50.0%
!! GGAAGATGGGCTAACTTGGT+AGG - chr3_3:83483079-83483098 None:intergenic 50.0%
AAGGTGGGAGAGACATGTTG+GGG - chr3_3:83483179-83483198 None:intergenic 50.0%
CAAAGGTGGGAGAGACATGT+TGG - chr3_3:83483181-83483200 None:intergenic 50.0%
GAAGGATGTCCCTGATGCTT+TGG - chr3_3:83483295-83483314 None:intergenic 50.0%
GTATAAAGGTTCCGGTGGGA+TGG - chr3_3:83483354-83483373 None:intergenic 50.0%
GTGGTGTATAAAGGTTCCGG+TGG - chr3_3:83483359-83483378 None:intergenic 50.0%
CTACTGTTGAGTCTGGCCAA+TGG + chr3_3:83483412-83483431 Msa0478640:CDS 50.0%
TAGCAGAAGCTGCAAAGGCT+TGG - chr3_3:83483446-83483465 None:intergenic 50.0%
GCTGCCTCATAACAGAATGC+AGG + chr3_3:83483524-83483543 Msa0478640:CDS 50.0%
TGAATCCTTTCCCCAACCCA+AGG - chr3_3:83483591-83483610 None:intergenic 50.0%
TCAGCTACGACGCAGTTCAG+AGG + chr3_3:83481880-83481899 Msa0478640:five_prime_UTR 55.0%
! AGTTCAGAGGTGCAGCAGTG+TGG + chr3_3:83481893-83481912 Msa0478640:five_prime_UTR 55.0%
! AGAGGTGCAGCAGTGTGGAA+TGG + chr3_3:83481898-83481917 Msa0478640:exon 55.0%
GGCTTCTGACGGAGCAACTT+CGG + chr3_3:83481919-83481938 Msa0478640:CDS 55.0%
TTCTGACGGAGCAACTTCGG+CGG + chr3_3:83481922-83481941 Msa0478640:CDS 55.0%
TTCTCTCTCTCCCTCCACGA+CGG - chr3_3:83481968-83481987 None:intergenic 55.0%
GGAGGGAGAGAGAGAACAAC+AGG + chr3_3:83481972-83481991 Msa0478640:CDS 55.0%
GGGAGAGAGAGAACAACAGG+AGG + chr3_3:83481975-83481994 Msa0478640:CDS 55.0%
ACAGGAGGAGAGAAAGACGG+AGG + chr3_3:83481990-83482009 Msa0478640:CDS 55.0%
ACGCGGGATTAAGGTCTCAG+GGG + chr3_3:83482035-83482054 Msa0478640:CDS 55.0%
GGATCAAGGGCAGAAACACC+AGG + chr3_3:83482964-83482983 Msa0478640:CDS 55.0%
AAATTTCCTGCACCGTCGCC+TGG - chr3_3:83482985-83483004 None:intergenic 55.0%
! AGACGGGCTCGGAAATGAAG+AGG - chr3_3:83483100-83483119 None:intergenic 55.0%
ATTTCCGAGCCCGTCTCGTA+TGG + chr3_3:83483104-83483123 Msa0478640:CDS 55.0%
GGGAACATGCTGCGAGCATA+TGG - chr3_3:83483159-83483178 None:intergenic 55.0%
GATGAGATAGGTGGCGTCAC+AGG - chr3_3:83483222-83483241 None:intergenic 55.0%
GCGCAGAAGCTGCGAAGAAA+GGG - chr3_3:83483323-83483342 None:intergenic 55.0%
!! TTCCGGTGGGATGGACTAGT+AGG - chr3_3:83483345-83483364 None:intergenic 55.0%
TTGACCTGCACCCCAAACTC+TGG - chr3_3:83483567-83483586 None:intergenic 55.0%
TGCAGGTCAAGCCTTGGGTT+GGG + chr3_3:83483577-83483596 Msa0478640:CDS 55.0%
!! TCAAGCCTTGGGTTGGGGAA+AGG + chr3_3:83483583-83483602 Msa0478640:CDS 55.0%
TCAGCTACGACGCAGTTCAG+AGG + chr3_3:83481880-83481899 Msa0478640:five_prime_UTR 55.0%
! AGTTCAGAGGTGCAGCAGTG+TGG + chr3_3:83481893-83481912 Msa0478640:five_prime_UTR 55.0%
! AGAGGTGCAGCAGTGTGGAA+TGG + chr3_3:83481898-83481917 Msa0478640:exon 55.0%
GGCTTCTGACGGAGCAACTT+CGG + chr3_3:83481919-83481938 Msa0478640:CDS 55.0%
TTCTGACGGAGCAACTTCGG+CGG + chr3_3:83481922-83481941 Msa0478640:CDS 55.0%
TTCTCTCTCTCCCTCCACGA+CGG - chr3_3:83481968-83481987 None:intergenic 55.0%
GGAGGGAGAGAGAGAACAAC+AGG + chr3_3:83481972-83481991 Msa0478640:CDS 55.0%
GGGAGAGAGAGAACAACAGG+AGG + chr3_3:83481975-83481994 Msa0478640:CDS 55.0%
ACAGGAGGAGAGAAAGACGG+AGG + chr3_3:83481990-83482009 Msa0478640:CDS 55.0%
ACGCGGGATTAAGGTCTCAG+GGG + chr3_3:83482035-83482054 Msa0478640:CDS 55.0%
GGATCAAGGGCAGAAACACC+AGG + chr3_3:83482964-83482983 Msa0478640:CDS 55.0%
AAATTTCCTGCACCGTCGCC+TGG - chr3_3:83482985-83483004 None:intergenic 55.0%
! AGACGGGCTCGGAAATGAAG+AGG - chr3_3:83483100-83483119 None:intergenic 55.0%
ATTTCCGAGCCCGTCTCGTA+TGG + chr3_3:83483104-83483123 Msa0478640:CDS 55.0%
GGGAACATGCTGCGAGCATA+TGG - chr3_3:83483159-83483178 None:intergenic 55.0%
GATGAGATAGGTGGCGTCAC+AGG - chr3_3:83483222-83483241 None:intergenic 55.0%
GCGCAGAAGCTGCGAAGAAA+GGG - chr3_3:83483323-83483342 None:intergenic 55.0%
!! TTCCGGTGGGATGGACTAGT+AGG - chr3_3:83483345-83483364 None:intergenic 55.0%
TTGACCTGCACCCCAAACTC+TGG - chr3_3:83483567-83483586 None:intergenic 55.0%
TGCAGGTCAAGCCTTGGGTT+GGG + chr3_3:83483577-83483596 Msa0478640:CDS 55.0%
!! TCAAGCCTTGGGTTGGGGAA+AGG + chr3_3:83483583-83483602 Msa0478640:CDS 55.0%
CGGCGGCGAATTCAAGTCGT+CGG + chr3_3:83481939-83481958 Msa0478640:CDS 60.0%
AGGGCAGAAACACCAGGCGA+CGG + chr3_3:83482970-83482989 Msa0478640:CDS 60.0%
! GCATCCATACGAGACGGGCT+CGG - chr3_3:83483111-83483130 None:intergenic 60.0%
GGCGCAGAAGCTGCGAAGAA+AGG - chr3_3:83483324-83483343 None:intergenic 60.0%
CGCCTACTAGTCCATCCCAC+CGG + chr3_3:83483340-83483359 Msa0478640:CDS 60.0%
! AGAGCCAGAGTTTGGGGTGC+AGG + chr3_3:83483560-83483579 Msa0478640:CDS 60.0%
TTGGGGTGCAGGTCAAGCCT+TGG + chr3_3:83483571-83483590 Msa0478640:CDS 60.0%
TGGGGTGCAGGTCAAGCCTT+GGG + chr3_3:83483572-83483591 Msa0478640:CDS 60.0%
GTGCAGGTCAAGCCTTGGGT+TGG + chr3_3:83483576-83483595 Msa0478640:CDS 60.0%
! GCAGGTCAAGCCTTGGGTTG+GGG + chr3_3:83483578-83483597 Msa0478640:CDS 60.0%
CGGCGGCGAATTCAAGTCGT+CGG + chr3_3:83481939-83481958 Msa0478640:CDS 60.0%
AGGGCAGAAACACCAGGCGA+CGG + chr3_3:83482970-83482989 Msa0478640:CDS 60.0%
! GCATCCATACGAGACGGGCT+CGG - chr3_3:83483111-83483130 None:intergenic 60.0%
GGCGCAGAAGCTGCGAAGAA+AGG - chr3_3:83483324-83483343 None:intergenic 60.0%
CGCCTACTAGTCCATCCCAC+CGG + chr3_3:83483340-83483359 Msa0478640:CDS 60.0%
! AGAGCCAGAGTTTGGGGTGC+AGG + chr3_3:83483560-83483579 Msa0478640:CDS 60.0%
TTGGGGTGCAGGTCAAGCCT+TGG + chr3_3:83483571-83483590 Msa0478640:CDS 60.0%
TGGGGTGCAGGTCAAGCCTT+GGG + chr3_3:83483572-83483591 Msa0478640:CDS 60.0%
GTGCAGGTCAAGCCTTGGGT+TGG + chr3_3:83483576-83483595 Msa0478640:CDS 60.0%
! GCAGGTCAAGCCTTGGGTTG+GGG + chr3_3:83483578-83483597 Msa0478640:CDS 60.0%
CAAGTCGTCGGAAGCCGTCG+TGG + chr3_3:83481951-83481970 Msa0478640:CDS 65.0%
TCGTCGGAAGCCGTCGTGGA+GGG + chr3_3:83481955-83481974 Msa0478640:CDS 65.0%
GAAACACCAGGCGACGGTGC+AGG + chr3_3:83482976-83482995 Msa0478640:CDS 65.0%
CAAGTCGTCGGAAGCCGTCG+TGG + chr3_3:83481951-83481970 Msa0478640:CDS 65.0%
TCGTCGGAAGCCGTCGTGGA+GGG + chr3_3:83481955-83481974 Msa0478640:CDS 65.0%
GAAACACCAGGCGACGGTGC+AGG + chr3_3:83482976-83482995 Msa0478640:CDS 65.0%
GTCGTCGGAAGCCGTCGTGG+AGG + chr3_3:83481954-83481973 Msa0478640:CDS 70.0%
GTCGTCGGAAGCCGTCGTGG+AGG + chr3_3:83481954-83481973 Msa0478640:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 83481649 83483958 83481649 ID=Msa0478640;Name=Msa0478640
chr3_3 mRNA 83481649 83483958 83481649 ID=Msa0478640-mRNA-1;Parent=Msa0478640;Name=Msa0478640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=268|1|1|1|1|1|2|290|315
chr3_3 exon 83481649 83482159 83481649 ID=Msa0478640-mRNA-1:exon:23474;Parent=Msa0478640-mRNA-1
chr3_3 exon 83482964 83483958 83482964 ID=Msa0478640-mRNA-1:exon:23475;Parent=Msa0478640-mRNA-1
chr3_3 five_prime_UTR 83481649 83481916 83481649 ID=Msa0478640-mRNA-1:five_prime_utr;Parent=Msa0478640-mRNA-1
chr3_3 CDS 83481917 83482159 83481917 ID=Msa0478640-mRNA-1:cds;Parent=Msa0478640-mRNA-1
chr3_3 CDS 83482964 83483668 83482964 ID=Msa0478640-mRNA-1:cds;Parent=Msa0478640-mRNA-1
chr3_3 three_prime_UTR 83483669 83483958 83483669 ID=Msa0478640-mRNA-1:three_prime_utr;Parent=Msa0478640-mRNA-1
Gene Sequence

>Msa0478640

ATGGCTTCTGACGGAGCAACTTCGGCGGCGAATTCAAGTCGTCGGAAGCCGTCGTGGAGGGAGAGAGAGAACAACAGGAGGAGAGAAAGACGGAGGAGAGCTATAGCGGCAAAGATTTACGCGGGATTAAGGTCTCAGGGGAATTATAATTTACCAAAACACTGTGATAACAATGAGGTCTTGAAAGCTCTTTGTGCTGAAGCTGGTTGGACAGTTGAAGAAGATGGCACCACTTATCGCAGGGGATCAAGGGCAGAAACACCAGGCGACGGTGCAGGAAATTTTAACAGAAACAACCCATTTTCATCTCAAAATCCAAGTCCTCTTTCATCATCATTTCCAAGTCCAATCCCTTCCTACCAAGTTAGCCCATCTTCCTCTTCATTTCCGAGCCCGTCTCGTATGGATGCAAACAACAATGCATCAAATTACATTCCATATGCTCGCAGCATGTTCCCCAACATGTCTCTCCCACCTTTGAGAATATCAAACAGCGCGCCTGTGACGCCACCTATCTCATCACCAACTTCAAGAAATCCCAAACCCATGATTCCAACATGGGAATCAATTGCCAAAGCATCAGGGACATCCTTCAATCACCCTTTCTTCGCAGCTTCTGCGCCTACTAGTCCATCCCACCGGAACCTTTATACACCACCTACTATTCCTGAATGTGATGAGTCTGATACTTCTACTGTTGAGTCTGGCCAATGGTTGAATTTCCAAGCCTTTGCAGCTTCTGCTAAATCAGTCTCTCCTACATTGAACTTTATGAAACCTGTAATTAATGAGCAGCATAACATGCTGCCTCATAACAGAATGCAGGAGATGAGGATTTCAGAGCCAGAGTTTGGGGTGCAGGTCAAGCCTTGGGTTGGGGAAAGGATTCATGAAGTGGGCTTGGATGATTTGGAGCTTACTCTTGGAAATGGAAAGGCACCTAGTTAA
Protein sequence

>Msa0478640

MASDGATSAANSSRRKPSWRERENNRRRERRRRAIAAKIYAGLRSQGNYNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRRGSRAETPGDGAGNFNRNNPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRMDANNNASNYIPYARSMFPNMSLPPLRISNSAPVTPPISSPTSRNPKPMIPTWESIAKASGTSFNHPFFAASAPTSPSHRNLYTPPTIPECDESDTSTVESGQWLNFQAFAASAKSVSPTLNFMKPVINEQHNMLPHNRMQEMRISEPEFGVQVKPWVGERIHEVGLDDLELTLGNGKAPS*