AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434640 MtrunA17_Chr3g0141061 95.276 762 23 7 1 755 1 756 0.0 1474
Msa0434640 MtrunA17_Chr5g0411491 44.133 784 326 24 3 767 1 691 3.46e-177 524
Msa0434640 MtrunA17_Chr8g0366871 34.478 786 319 22 3 767 1 611 2.21e-115 362
Msa0434640 MtrunA17_Chr2g0326911 31.563 678 347 18 129 752 68 682 2.21e-88 293
Msa0434640 MtrunA17_Chr1g0199601 33.179 648 332 20 108 703 54 652 6.14e-86 287
Msa0434640 MtrunA17_Chr4g0028831 32.415 617 320 20 129 703 69 630 1.32e-78 267
Msa0434640 MtrunA17_Chr2g0290981 29.735 491 262 18 115 589 78 501 3.91e-39 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434640 AT5G49665.1 55.682 792 272 26 3 767 1 740 0.0 735
Msa0434640 AT2G22680.1 41.457 796 322 27 3 767 1 683 1.29e-160 481
Msa0434640 AT4G37890.2 41.414 792 356 23 3 767 1 711 8.02e-154 465
Msa0434640 AT4G37890.1 43.731 670 285 18 118 767 142 739 1.27e-151 460
Msa0434640 AT5G65683.1 37.918 807 369 29 3 767 1 717 5.67e-128 398
Msa0434640 AT2G38970.1 33.540 644 341 19 93 703 32 621 5.39e-96 313
Msa0434640 AT3G54780.1 33.727 593 295 18 131 697 73 593 3.41e-88 292
Msa0434640 AT5G60710.1 34.572 619 338 15 108 703 48 622 4.30e-88 293
Msa0434640 AT3G54780.3 32.756 577 283 16 129 697 72 551 1.72e-83 278
Msa0434640 AT3G54780.2 32.870 575 281 16 131 697 73 550 3.89e-83 278
Msa0434640 AT3G54780.4 32.756 577 283 16 129 697 121 600 8.20e-83 278
Msa0434640 AT3G54780.5 32.870 575 281 16 131 697 122 599 1.30e-82 277
Msa0434640 AT1G08050.1 31.145 594 286 18 132 697 69 567 1.50e-78 265

Find 220 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAATTCTCCCATTTAA+AGG 0.203174 3_2:+87551813 None:intergenic
TACTCCTTTCTCCAACTTCT+AGG 0.229181 3_2:-87553595 Msa0434640:CDS
AAGACAAAGGAATTTAGTTT+AGG 0.233441 3_2:+87554562 None:intergenic
GTGTATGGCCCACCTTTAAA+TGG 0.258034 3_2:-87551825 Msa0434640:three_prime_UTR
CTCAATCTAGCACAGCTTCT+TGG 0.275682 3_2:+87554308 None:intergenic
AGCGTATGTTTCGTGTGTTC+TGG 0.277675 3_2:+87553370 None:intergenic
TGGTGCAAACGTGGAGTTAA+AGG 0.280307 3_2:+87554260 None:intergenic
TAGGAGACTTTGTTGATCTT+GGG 0.283485 3_2:+87554126 None:intergenic
TTGAGACTGATCCACGTTCT+TGG 0.283557 3_2:+87553667 None:intergenic
AAAGAACTTATTATAATTAG+AGG 0.284006 3_2:-87551945 Msa0434640:three_prime_UTR
GAGAAAAGCAACTACAGTTT+TGG 0.284089 3_2:-87553024 Msa0434640:CDS
CAGCTTCTTGGACTAGGATT+TGG 0.293853 3_2:+87554320 None:intergenic
AGACAAAGGAATTTAGTTTA+GGG 0.294259 3_2:+87554563 None:intergenic
CATCTCTTGGTCCTTCTGAT+AGG 0.296073 3_2:-87553184 Msa0434640:CDS
GAAGAAGGAATGGATCTAAA+AGG 0.297547 3_2:+87554531 None:intergenic
AGAGTTCCAGCGTCAGCTTT+AGG 0.303683 3_2:-87552594 Msa0434640:CDS
TTATCTGATATGGTAGATTC+AGG 0.310453 3_2:+87554365 None:intergenic
CGTTTGGTTATTTCATCTCT+TGG 0.311758 3_2:-87553197 Msa0434640:CDS
GAAATTCCGGTTCATGCGTT+TGG 0.312433 3_2:-87552867 Msa0434640:CDS
TGCTCATCATTTACTTGCTT+CGG 0.315746 3_2:-87552343 Msa0434640:CDS
CTAGGAGACTTTGTTGATCT+TGG 0.320258 3_2:+87554125 None:intergenic
AAGAAGAGGGTGCGAAAATA+TGG 0.323943 3_2:-87552175 Msa0434640:CDS
TATACTATCTCTTGACTTGC+GGG 0.335850 3_2:+87552525 None:intergenic
CTGAGCTGGCGGAGCTTCAT+TGG 0.336931 3_2:-87552257 Msa0434640:CDS
GAGTTCCAGCGTCAGCTTTA+GGG 0.338033 3_2:-87552593 Msa0434640:CDS
ATTGTTCTTATTATCTGATA+TGG 0.338434 3_2:+87554355 None:intergenic
ACGTTCTTGGTTCTGATAAC+AGG 0.345062 3_2:+87553680 None:intergenic
TTCCATGTGGCGTTGCAGAC+AGG 0.346447 3_2:+87553803 None:intergenic
ATCGTTGACCGGCTTGTTAC+CGG 0.348514 3_2:-87553074 Msa0434640:CDS
GATAGTATACGGCAGAGAAC+AGG 0.349583 3_2:-87552511 Msa0434640:CDS
TCAGGATTTAAGAGTTCAAC+TGG 0.352337 3_2:-87552760 Msa0434640:CDS
GTTCGCTCATATTGAAATTC+CGG 0.357741 3_2:-87552880 Msa0434640:CDS
AAATTCCGGTTCATGCGTTT+GGG 0.366480 3_2:-87552866 Msa0434640:CDS
AATTAGAGGAAGAAAACAAT+TGG 0.378258 3_2:-87551931 Msa0434640:three_prime_UTR
CCGGTTCATGCGTTTGGGTT+TGG 0.382763 3_2:-87552861 Msa0434640:CDS
ACTGATACGATGGCACATTC+TGG 0.382845 3_2:+87553395 None:intergenic
CGGTGATTCAAGAACTGTTC+AGG 0.383564 3_2:-87553429 Msa0434640:CDS
GCTAAAACGCGCGATGCGTT+TGG 0.384841 3_2:-87553213 Msa0434640:CDS
CTGTTTGAACAGCGTGAAAA+CGG 0.390254 3_2:-87553921 Msa0434640:CDS
TGAAGAAGAAAGAGAGCTTT+TGG 0.391859 3_2:-87552625 Msa0434640:CDS
TCTCAGAATATACGATCAAC+AGG 0.393682 3_2:-87552459 Msa0434640:CDS
TTTAAATGGGAGAATTTGAT+TGG 0.394069 3_2:-87551811 Msa0434640:three_prime_UTR
TTCTCAAAGTCTAAAACAAA+AGG 0.395460 3_2:-87554462 Msa0434640:five_prime_UTR
ATTAGAGGAAGAAAACAATT+GGG 0.396402 3_2:-87551930 Msa0434640:three_prime_UTR
TGTTTGAACAGCGTGAAAAC+GGG 0.401641 3_2:-87553920 Msa0434640:CDS
AACAGCATGACGCTAGCAAC+CGG 0.405649 3_2:+87552981 None:intergenic
CGAAGACTTGGACTAGAAAC+TGG 0.406962 3_2:+87554224 None:intergenic
CAAGGACTATGATCTTGAAA+AGG 0.409257 3_2:+87551714 None:intergenic
AAACTGGTTGAGATTTAGAT+TGG 0.410433 3_2:+87554240 None:intergenic
GAAAATATGGTGGATGAAAA+TGG 0.415794 3_2:-87552162 Msa0434640:CDS
GATGACAACTGCGAGTTTCA+AGG 0.418436 3_2:-87553527 Msa0434640:CDS
CTAGCACAGCTTCTTGGACT+AGG 0.420558 3_2:+87554314 None:intergenic
CTCTCGAGGCGTTTAACTGC+AGG 0.422107 3_2:-87554723 Msa0434640:five_prime_UTR
AAGCGGTTATAGTCATGAAC+CGG 0.424642 3_2:-87552832 Msa0434640:CDS
TCGTGGCTTGGAAGCTGAGC+TGG 0.424913 3_2:-87552271 Msa0434640:CDS
CTGATCTCGGCGGCCCGGGC+CGG 0.425651 3_2:+87552720 None:intergenic
AACACACGAAACATACGCTT+TGG 0.429505 3_2:-87553366 Msa0434640:CDS
AATGGGAGAATTTGATTGGT+TGG 0.430331 3_2:-87551807 Msa0434640:three_prime_UTR
AAAGGAGAGCGAGGAGAAGT+TGG 0.431736 3_2:+87554083 None:intergenic
GGCTGAGAAGCTGGCTAAGA+TGG 0.431860 3_2:-87552106 Msa0434640:CDS
GACGGCTCAGGGTCAACGTT+TGG 0.433573 3_2:-87553105 Msa0434640:CDS
TGAATCACCGACTCCGTCGC+TGG 0.435437 3_2:+87553442 None:intergenic
TTCAATCTGATGATCCGGCC+CGG 0.444036 3_2:-87552734 Msa0434640:CDS
TCTCAACGGTAAGAGCCGTT+TGG 0.445243 3_2:+87553133 None:intergenic
CCAGCGTCAGCTTTAGGGTA+CGG 0.445543 3_2:-87552588 Msa0434640:CDS
GCAAGTCAAGAGATAGTATA+CGG 0.447444 3_2:-87552522 Msa0434640:CDS
CCAAACCCAAACGCATGAAC+CGG 0.450222 3_2:+87552861 None:intergenic
GAATTTCAATATGAGCGAAC+CGG 0.453411 3_2:+87552883 None:intergenic
TTGGAGAGCGGCTGAGAAGC+TGG 0.453516 3_2:-87552115 Msa0434640:CDS
TTGTGGTTTGGAATTGCATT+GGG 0.453923 3_2:+87553728 None:intergenic
CAGCGTCAGCTTTAGGGTAC+GGG 0.456057 3_2:-87552587 Msa0434640:CDS
GGAATTTAGTTTAGGGAGCA+TGG 0.462544 3_2:+87554570 None:intergenic
GTTCCGCCGCGGAGTGGCGG+TGG 0.462679 3_2:+87553326 None:intergenic
CGTTGCAGACAGGGCAAACA+AGG 0.468208 3_2:+87553813 None:intergenic
TCGTGAATGAAAATGGGTAC+TGG 0.469774 3_2:-87554416 Msa0434640:exon
CTTGTCACTGTTCTCGATGT+TGG 0.470383 3_2:-87553266 Msa0434640:CDS
TTTGATATTGAGTTAACTCT+AGG 0.472211 3_2:+87554107 None:intergenic
TTGGAGGAGACAGCAAGAAC+AGG 0.474369 3_2:-87552238 Msa0434640:CDS
GGGCTTTCAATCTGATGATC+CGG 0.476077 3_2:-87552739 Msa0434640:CDS
CGTGAAAACGGGGCAGGGGA+AGG 0.476652 3_2:-87553909 Msa0434640:CDS
ACTAACACTGTTACCTTCAC+CGG 0.477706 3_2:+87553055 None:intergenic
TGGCTCGGCGTATCGTTGAC+CGG 0.478939 3_2:-87553085 Msa0434640:CDS
AGATTACGTGATGGAGTGTA+TGG 0.481840 3_2:-87551840 Msa0434640:three_prime_UTR
AGACCCACGCTGTTGAGCTT+AGG 0.482490 3_2:-87552675 Msa0434640:CDS
TTCAGGGTCTCGTGTACAAA+AGG 0.483863 3_2:+87554382 None:intergenic
GTTGAGAAGAATGACGGCTC+AGG 0.487316 3_2:-87553117 Msa0434640:CDS
AGCACTGATCTCGGCGGCCC+GGG 0.490522 3_2:+87552716 None:intergenic
ATCCGACGGTCAAGATGAAA+AGG 0.492993 3_2:-87552958 Msa0434640:CDS
CTCAGGGTCAACGTTTGGCT+CGG 0.493080 3_2:-87553100 Msa0434640:CDS
AGGAGACTTTGTTGATCTTG+GGG 0.496143 3_2:+87554127 None:intergenic
TAGCACTGATCTCGGCGGCC+CGG 0.497684 3_2:+87552715 None:intergenic
TCAGCTGAGCAATATGTTCG+TGG 0.499359 3_2:-87552288 Msa0434640:CDS
GAATTTAGTTTAGGGAGCAT+GGG 0.504116 3_2:+87554571 None:intergenic
AAGGACTATGATCTTGAAAA+GGG 0.504126 3_2:+87551715 None:intergenic
GTATACTATCTCTTGACTTG+CGG 0.504508 3_2:+87552524 None:intergenic
GACCGGCTTGTTACCGGTGA+AGG 0.505460 3_2:-87553068 Msa0434640:CDS
GAACAGCGTGAAAACGGGGC+AGG 0.506795 3_2:-87553915 Msa0434640:CDS
GTCACTGTTCTCGATGTTGG+TGG 0.508779 3_2:-87553263 Msa0434640:CDS
CAAGCTGAAGTAGGTGTAAG+TGG 0.509486 3_2:+87552135 None:intergenic
TGTATGGCCCACCTTTAAAT+GGG 0.510023 3_2:-87551824 Msa0434640:three_prime_UTR
TCAATCTGATGATCCGGCCC+GGG 0.510856 3_2:-87552733 Msa0434640:CDS
AAAACAATTGGGGATGGGAA+TGG 0.515689 3_2:-87551919 Msa0434640:three_prime_UTR
TCCATGTGGCGTTGCAGACA+GGG 0.516401 3_2:+87553804 None:intergenic
TATCTGATATGGTAGATTCA+GGG 0.517929 3_2:+87554366 None:intergenic
TCTCAAAGTCTAAAACAAAA+GGG 0.520054 3_2:-87554461 Msa0434640:five_prime_UTR
AGCTGGCGGAGCTTCATTGG+AGG 0.520138 3_2:-87552254 Msa0434640:CDS
TTTGTGGTTTGGAATTGCAT+TGG 0.521882 3_2:+87553727 None:intergenic
AATAAAGTCAGTGACTTACA+TGG 0.522082 3_2:-87552063 Msa0434640:CDS
ACTATCTTCTAATGCACAAA+GGG 0.522294 3_2:+87551870 None:intergenic
AAGTTCAACGAACTAGACTT+TGG 0.524651 3_2:+87554668 None:intergenic
AGCTTAGGAGCCGTACGGCT+CGG 0.525452 3_2:-87552660 Msa0434640:CDS
CCAGCACACTTGATCCTTCA+CGG 0.529684 3_2:-87553304 Msa0434640:CDS
TTCTTGTGCGCCGCTAGAAG+AGG 0.529764 3_2:+87553773 None:intergenic
ATAGTGTTAATCCTAGAAGT+TGG 0.531635 3_2:+87553584 None:intergenic
ATTGTTCGACAACGAAGACT+TGG 0.533284 3_2:+87554212 None:intergenic
TTTGCAAATGCATCCTCACC+CGG 0.533505 3_2:+87552813 None:intergenic
TGAGCAATATGTTCGTGGCT+TGG 0.534296 3_2:-87552283 Msa0434640:CDS
TTGAAGAGGGACAACTTCAA+AGG 0.534296 3_2:+87554065 None:intergenic
AACAGCGTGAAAACGGGGCA+GGG 0.537796 3_2:-87553914 Msa0434640:CDS
CCCACCATGTGATGACGGTA+AGG 0.540505 3_2:-87552563 Msa0434640:CDS
GTCGCTGGTTTGAATGTCAT+CGG 0.540958 3_2:+87553457 None:intergenic
GTGCTGGTTCCGCCGCGGAG+TGG 0.541711 3_2:+87553320 None:intergenic
AGGAAGAAAACAATTGGGGA+TGG 0.542265 3_2:-87551925 Msa0434640:three_prime_UTR
AATTTCAATATGAGCGAACC+GGG 0.543870 3_2:+87552884 None:intergenic
TCTATCGGAGCTCGCCGTGA+AGG 0.548944 3_2:+87553290 None:intergenic
CACTTACACCTACTTCAGCT+TGG 0.550476 3_2:-87552134 Msa0434640:CDS
CAAATTCTCCCATTTAAAGG+TGG 0.550723 3_2:+87551816 None:intergenic
CCGTGAAGGATCAAGTGTGC+TGG 0.551020 3_2:+87553304 None:intergenic
GCCCTGTCTGCAACGCCACA+TGG 0.554667 3_2:-87553805 Msa0434640:CDS
GGACAAGGATCGAAAGGTTG+AGG 0.556824 3_2:-87552437 Msa0434640:CDS
AGAGTATATAGCACTGATCT+CGG 0.558479 3_2:+87552707 None:intergenic
TACATGGTTTCGAAAATGCT+AGG 0.561353 3_2:-87552047 Msa0434640:CDS
CGTACATGTGCTGCTATGCA+AGG 0.562258 3_2:+87553848 None:intergenic
TGATTCATTCAGAGTAGCTG+TGG 0.564549 3_2:-87553947 Msa0434640:intron
AAATTCTCCCATTTAAAGGT+GGG 0.565551 3_2:+87551817 None:intergenic
ACAGCGTGAAAACGGGGCAG+GGG 0.566472 3_2:-87553913 Msa0434640:CDS
ATGATGATGCAAAGAAGAAG+AGG 0.566569 3_2:-87552189 Msa0434640:CDS
TTGGTTCTGATAACAGGAGA+GGG 0.567897 3_2:+87553686 None:intergenic
TTATAGTCATGAACCGGGTG+AGG 0.569511 3_2:-87552826 Msa0434640:CDS
GAAGCTGGCTAAGATGGCTA+TGG 0.570165 3_2:-87552100 Msa0434640:CDS
TGGCTTGGAAGCTGAGCTGG+CGG 0.571971 3_2:-87552268 Msa0434640:CDS
AAGAGGGTGCGAAAATATGG+TGG 0.572627 3_2:-87552172 Msa0434640:CDS
TAGCATGTGAAGCTTTGCGC+TGG 0.574375 3_2:+87553232 None:intergenic
GGAAGAAAACAATTGGGGAT+GGG 0.575040 3_2:-87551924 Msa0434640:three_prime_UTR
ATATTCTGAGATTGATTCTG+AGG 0.576073 3_2:+87552471 None:intergenic
TAATCCTAGAAGTTGGAGAA+AGG 0.576364 3_2:+87553591 None:intergenic
CAGGGCAAACAAGGGTAGCA+TGG 0.577383 3_2:+87553822 None:intergenic
TACTATCTTCTAATGCACAA+AGG 0.577812 3_2:+87551869 None:intergenic
AAGCCTCCTTGACTCAGCTA+TGG 0.578141 3_2:+87552392 None:intergenic
TTGAGAAGAATGACGGCTCA+GGG 0.581626 3_2:-87553116 Msa0434640:CDS
GATGCATTTGCAAAATGTGT+TGG 0.582126 3_2:-87552804 Msa0434640:CDS
CGTGAATGAAAATGGGTACT+GGG 0.582287 3_2:-87554415 Msa0434640:exon
TACACAAAATACAAACAGCC+AGG 0.582719 3_2:-87554777 None:intergenic
GCATTTGCAAAATGTGTTGG+CGG 0.583323 3_2:-87552801 Msa0434640:CDS
GTATAAATCGCCGAGCCGTA+CGG 0.585496 3_2:+87552650 None:intergenic
CTGGTTCCGCCGCGGAGTGG+CGG 0.587009 3_2:+87553323 None:intergenic
ACAACCACGCTTCTTCAACC+CGG 0.593144 3_2:-87552902 Msa0434640:CDS
CGGGTCCCACCATGTGATGA+CGG 0.594441 3_2:-87552568 Msa0434640:CDS
TTTGGGTTTGGTAGCAAAAG+CGG 0.594571 3_2:-87552849 Msa0434640:CDS
AGAATCAAAATCAAAATCAA+CGG 0.596605 3_2:-87552932 Msa0434640:CDS
GAAGTTGGAGAAAGGAGTAG+AGG 0.597828 3_2:+87553599 None:intergenic
ATAGTATACGGCAGAGAACA+GGG 0.598674 3_2:-87552510 Msa0434640:CDS
TACCTTCACCGGTAACAAGC+CGG 0.599061 3_2:+87553066 None:intergenic
CAACAGGGACAAGGATCGAA+AGG 0.599723 3_2:-87552443 Msa0434640:CDS
TGTTCTGGAAACTGATACGA+TGG 0.602317 3_2:+87553385 None:intergenic
GGAGACAAGGTGGTAGCAGA+CGG 0.603225 3_2:-87551898 Msa0434640:three_prime_UTR
GATTTAGATTGGTGCAAACG+TGG 0.604999 3_2:+87554251 None:intergenic
AGAACAGTGACAAGATCTAT+CGG 0.606607 3_2:+87553275 None:intergenic
TAGAGGCTCGTCATCATCGT+AGG 0.609610 3_2:+87553616 None:intergenic
GCCGCTCTCCAAGCTGAAGT+AGG 0.612752 3_2:+87552126 None:intergenic
TTAGAGGAAGAAAACAATTG+GGG 0.614763 3_2:-87551929 Msa0434640:three_prime_UTR
TGGGGATGGGAATGGAGACA+AGG 0.616259 3_2:-87551911 Msa0434640:three_prime_UTR
TCTCGAGGCGTTTAACTGCA+GGG 0.616353 3_2:-87554722 Msa0434640:five_prime_UTR
ACCTACTTCAGCTTGGAGAG+CGG 0.616379 3_2:-87552127 Msa0434640:CDS
GCAAGAACAGGTTCAAGTTG+AGG 0.620780 3_2:-87552226 Msa0434640:CDS
GACAACTTCAAAGGAGAGCG+AGG 0.621814 3_2:+87554074 None:intergenic
CTTGGTTCTGATAACAGGAG+AGG 0.622597 3_2:+87553685 None:intergenic
GGATGGGAATGGAGACAAGG+TGG 0.622694 3_2:-87551908 Msa0434640:three_prime_UTR
CACGAGCCATAGCTGAGTCA+AGG 0.623356 3_2:-87552398 Msa0434640:CDS
CAGGATTTAAGAGTTCAACT+GGG 0.628767 3_2:-87552759 Msa0434640:CDS
GGCTCCTAAGCTCAACAGCG+TGG 0.629591 3_2:+87552671 None:intergenic
AGCGTCATGCTGTTATCCGA+CGG 0.629723 3_2:-87552972 Msa0434640:CDS
ACAGCATGACGCTAGCAACC+GGG 0.631559 3_2:+87552982 None:intergenic
GCTCCTAAGCTCAACAGCGT+GGG 0.636528 3_2:+87552672 None:intergenic
GACACCTTACCGTCATCACA+TGG 0.636879 3_2:+87552559 None:intergenic
ACAATTGAAAGCCTATCAGA+AGG 0.637171 3_2:+87553173 None:intergenic
CCTTACCGTCATCACATGGT+GGG 0.641950 3_2:+87552563 None:intergenic
TGATGATGCAAAGAAGAAGA+GGG 0.644376 3_2:-87552188 Msa0434640:CDS
ATTCAAACCAGCGACGGAGT+CGG 0.647168 3_2:-87553449 Msa0434640:CDS
AGTGCTATATACTCTTGCAG+TGG 0.648460 3_2:-87552699 Msa0434640:CDS
CCGTACCCTAAAGCTGACGC+TGG 0.648963 3_2:+87552588 None:intergenic
AAAGGTGACGCAGAAGACAA+AGG 0.649534 3_2:+87554549 None:intergenic
CGAAGCAGATGAAAATGCAG+AGG 0.652962 3_2:-87553558 Msa0434640:CDS
CTTACCGTTGAGAAGAATGA+CGG 0.653691 3_2:-87553123 Msa0434640:CDS
GCACCACCGCCACTCCGCGG+CGG 0.660211 3_2:-87553329 Msa0434640:CDS
GATAATAAGAACAATAACAA+CGG 0.660824 3_2:-87554347 Msa0434640:CDS
ATATACGATCAACAGGGACA+AGG 0.662088 3_2:-87552452 Msa0434640:CDS
AGCGGTTATAGTCATGAACC+GGG 0.663417 3_2:-87552831 Msa0434640:CDS
GTTTGAACAGCGTGAAAACG+GGG 0.664529 3_2:-87553919 Msa0434640:CDS
TGAGCCGTCATTCTTCTCAA+CGG 0.667424 3_2:+87553119 None:intergenic
GTATGATTAAGATTACGTGA+TGG 0.671169 3_2:-87551849 Msa0434640:three_prime_UTR
ATACTATCTCTTGACTTGCG+GGG 0.673555 3_2:+87552526 None:intergenic
ACCTTACCGTCATCACATGG+TGG 0.676357 3_2:+87552562 None:intergenic
GATGACATTCAAACCAGCGA+CGG 0.690438 3_2:-87553455 Msa0434640:CDS
TGTTGAGCTTAGGAGCCGTA+CGG 0.693392 3_2:-87552665 Msa0434640:CDS
AAAGCACCACCGCCACTCCG+CGG 0.698878 3_2:-87553332 Msa0434640:CDS
TGTTATCAGAACCAAGAACG+TGG 0.700341 3_2:-87553678 Msa0434640:CDS
CAAGTGTGCTGGTTCCGCCG+CGG 0.700524 3_2:+87553315 None:intergenic
CTCAGAATATACGATCAACA+GGG 0.703507 3_2:-87552458 Msa0434640:CDS
GGGAGAATAGATCTCTCTCG+AGG 0.703811 3_2:-87554737 Msa0434640:five_prime_UTR
GAGCCATAGCTGAGTCAAGG+AGG 0.706855 3_2:-87552395 Msa0434640:CDS
GTTGCAGACAGGGCAAACAA+GGG 0.707906 3_2:+87553814 None:intergenic
AAGAGGAACGTCTTTCCATG+TGG 0.708069 3_2:+87553790 None:intergenic
GTACATGTGCTGCTATGCAA+GGG 0.711015 3_2:+87553849 None:intergenic
CGAACCGGGTTGAAGAAGCG+TGG 0.713159 3_2:+87552898 None:intergenic
GAAAGACGTTCCTCTTCTAG+CGG 0.718880 3_2:-87553783 Msa0434640:CDS
GGATCGTAGAGAAAGAAACC+CGG 0.722882 3_2:-87553000 Msa0434640:CDS
GTATATAGCACTGATCTCGG+CGG 0.740345 3_2:+87552710 None:intergenic
GAATGAAAATGGGTACTGGG+TGG 0.746218 3_2:-87554412 Msa0434640:CDS
CAAGGTGGTAGCAGACGGCG+CGG 0.753167 3_2:-87551893 Msa0434640:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTATTATCTTGATA+TGG - chr3_2:87551853-87551872 Msa0434640:three_prime_UTR 10.0%
!!! ATTACATGTTTTTTTTTTTT+TGG - chr3_2:87554464-87554483 Msa0434640:five_prime_UTR 10.0%
!!! TTACATGTTTTTTTTTTTTT+GGG - chr3_2:87554465-87554484 Msa0434640:five_prime_UTR 10.0%
!! ATAATATCAGTATCATTATT+TGG + chr3_2:87552512-87552531 None:intergenic 15.0%
!! AAAGAACTTATTATAATTAG+AGG - chr3_2:87554538-87554557 Msa0434640:five_prime_UTR 15.0%
!! ATTGTTCTTATTATCTGATA+TGG + chr3_2:87552131-87552150 None:intergenic 20.0%
!! GATAATAAGAACAATAACAA+CGG - chr3_2:87552136-87552155 Msa0434640:CDS 20.0%
!! TCTCAATAACATAGTAAAAA+AGG + chr3_2:87552488-87552507 None:intergenic 20.0%
!! AGAATCAAAATCAAAATCAA+CGG - chr3_2:87553551-87553570 Msa0434640:CDS 20.0%
!! AGACAAAGGAATTTAGTTTA+GGG + chr3_2:87551923-87551942 None:intergenic 25.0%
!! AAGACAAAGGAATTTAGTTT+AGG + chr3_2:87551924-87551943 None:intergenic 25.0%
!!! AGTTTTGTTTGTTTTGAAGA+AGG + chr3_2:87551970-87551989 None:intergenic 25.0%
!! TTCTCAAAGTCTAAAACAAA+AGG - chr3_2:87552021-87552040 Msa0434640:three_prime_UTR 25.0%
!! TCTCAAAGTCTAAAACAAAA+GGG - chr3_2:87552022-87552041 Msa0434640:exon 25.0%
! TTTGATATTGAGTTAACTCT+AGG + chr3_2:87552379-87552398 None:intergenic 25.0%
! AATTAGAGGAAGAAAACAAT+TGG - chr3_2:87554552-87554571 Msa0434640:five_prime_UTR 25.0%
! ATTAGAGGAAGAAAACAATT+GGG - chr3_2:87554553-87554572 Msa0434640:five_prime_UTR 25.0%
! AATCAAATTCTCCCATTTAA+AGG + chr3_2:87554673-87554692 None:intergenic 25.0%
! TTTAAATGGGAGAATTTGAT+TGG - chr3_2:87554672-87554691 Msa0434640:five_prime_UTR 25.0%
!!! TGTTTGTTTTGAAGAAGGAA+TGG + chr3_2:87551965-87551984 None:intergenic 30.0%
! TACCTTTTCGTGAATGAAAA+TGG - chr3_2:87552060-87552079 Msa0434640:CDS 30.0%
! ACCTTTTCGTGAATGAAAAT+GGG - chr3_2:87552061-87552080 Msa0434640:CDS 30.0%
TATCTGATATGGTAGATTCA+GGG + chr3_2:87552120-87552139 None:intergenic 30.0%
TTATCTGATATGGTAGATTC+AGG + chr3_2:87552121-87552140 None:intergenic 30.0%
AAACTGGTTGAGATTTAGAT+TGG + chr3_2:87552246-87552265 None:intergenic 30.0%
!!! TTTTGCTACTTTGAAATCTG+GGG + chr3_2:87552330-87552349 None:intergenic 30.0%
!!! CTTTTGCTACTTTGAAATCT+GGG + chr3_2:87552331-87552350 None:intergenic 30.0%
!!! ACTTTTGCTACTTTGAAATC+TGG + chr3_2:87552332-87552351 None:intergenic 30.0%
!!! TTTGAAGCTGTTTTTGAAGA+GGG + chr3_2:87552434-87552453 None:intergenic 30.0%
!!! ATTTGAAGCTGTTTTTGAAG+AGG + chr3_2:87552435-87552454 None:intergenic 30.0%
TCAAAAACAGCTTCAAATTC+AGG - chr3_2:87552437-87552456 Msa0434640:CDS 30.0%
CAAAAACAGCTTCAAATTCA+GGG - chr3_2:87552438-87552457 Msa0434640:CDS 30.0%
! TTTCTGTAGTAGGTATTTTG+TGG + chr3_2:87552775-87552794 None:intergenic 30.0%
ATAGTGTTAATCCTAGAAGT+TGG + chr3_2:87552902-87552921 None:intergenic 30.0%
!! CTTTTTCGTCTATTTCCAAA+CGG - chr3_2:87553335-87553354 Msa0434640:CDS 30.0%
!! ATATTCTGAGATTGATTCTG+AGG + chr3_2:87554015-87554034 None:intergenic 30.0%
!! GAAAATATGGTGGATGAAAA+TGG - chr3_2:87554321-87554340 Msa0434640:CDS 30.0%
AATAAAGTCAGTGACTTACA+TGG - chr3_2:87554420-87554439 Msa0434640:exon 30.0%
TTAGAGGAAGAAAACAATTG+GGG - chr3_2:87554554-87554573 Msa0434640:five_prime_UTR 30.0%
ACTATCTTCTAATGCACAAA+GGG + chr3_2:87554616-87554635 None:intergenic 30.0%
TACTATCTTCTAATGCACAA+AGG + chr3_2:87554617-87554636 None:intergenic 30.0%
GTATGATTAAGATTACGTGA+TGG - chr3_2:87554634-87554653 Msa0434640:five_prime_UTR 30.0%
AAATTCTCCCATTTAAAGGT+GGG + chr3_2:87554669-87554688 None:intergenic 30.0%
GAGAAGACAAAAAGATATGA+CGG + chr3_2:87554707-87554726 None:intergenic 30.0%
AAGTTCAACGAACTAGACTT+TGG + chr3_2:87551818-87551837 None:intergenic 35.0%
! GAATTTAGTTTAGGGAGCAT+GGG + chr3_2:87551915-87551934 None:intergenic 35.0%
GAAGAAGGAATGGATCTAAA+AGG + chr3_2:87551955-87551974 None:intergenic 35.0%
! ACCCATTTTCATTCACGAAA+AGG + chr3_2:87552065-87552084 None:intergenic 35.0%
! GCTAGATTGAGTTTTCTTTC+TGG - chr3_2:87552187-87552206 Msa0434640:CDS 35.0%
! AGATTGAGTTTTCTTTCTGG+TGG - chr3_2:87552190-87552209 Msa0434640:CDS 35.0%
TAGGAGACTTTGTTGATCTT+GGG + chr3_2:87552360-87552379 None:intergenic 35.0%
! TTGTGGTTTGGAATTGCATT+GGG + chr3_2:87552758-87552777 None:intergenic 35.0%
! TTTGTGGTTTGGAATTGCAT+TGG + chr3_2:87552759-87552778 None:intergenic 35.0%
! GTAGTAGGTATTTTGTGGTT+TGG + chr3_2:87552770-87552789 None:intergenic 35.0%
TAATCCTAGAAGTTGGAGAA+AGG + chr3_2:87552895-87552914 None:intergenic 35.0%
AGAACAGTGACAAGATCTAT+CGG + chr3_2:87553211-87553230 None:intergenic 35.0%
! CGTTTGGTTATTTCATCTCT+TGG - chr3_2:87553286-87553305 Msa0434640:CDS 35.0%
ACAATTGAAAGCCTATCAGA+AGG + chr3_2:87553313-87553332 None:intergenic 35.0%
! GAGAAAAGCAACTACAGTTT+TGG - chr3_2:87553459-87553478 Msa0434640:CDS 35.0%
!! AAAAGCAACTACAGTTTTGG+AGG - chr3_2:87553462-87553481 Msa0434640:CDS 35.0%
AATTTCAATATGAGCGAACC+GGG + chr3_2:87553602-87553621 None:intergenic 35.0%
GAATTTCAATATGAGCGAAC+CGG + chr3_2:87553603-87553622 None:intergenic 35.0%
GTTCGCTCATATTGAAATTC+CGG - chr3_2:87553603-87553622 Msa0434640:CDS 35.0%
GATGCATTTGCAAAATGTGT+TGG - chr3_2:87553679-87553698 Msa0434640:CDS 35.0%
TCAGGATTTAAGAGTTCAAC+TGG - chr3_2:87553723-87553742 Msa0434640:CDS 35.0%
CAGGATTTAAGAGTTCAACT+GGG - chr3_2:87553724-87553743 Msa0434640:CDS 35.0%
!! AGAGTATATAGCACTGATCT+CGG + chr3_2:87553779-87553798 None:intergenic 35.0%
! TGAAGAAGAAAGAGAGCTTT+TGG - chr3_2:87553858-87553877 Msa0434640:CDS 35.0%
!! TATACTATCTCTTGACTTGC+GGG + chr3_2:87553961-87553980 None:intergenic 35.0%
! GTATACTATCTCTTGACTTG+CGG + chr3_2:87553962-87553981 None:intergenic 35.0%
GCAAGTCAAGAGATAGTATA+CGG - chr3_2:87553961-87553980 Msa0434640:intron 35.0%
TCTCAGAATATACGATCAAC+AGG - chr3_2:87554024-87554043 Msa0434640:intron 35.0%
CTCAGAATATACGATCAACA+GGG - chr3_2:87554025-87554044 Msa0434640:intron 35.0%
TGCTCATCATTTACTTGCTT+CGG - chr3_2:87554140-87554159 Msa0434640:CDS 35.0%
! ATGATGATGCAAAGAAGAAG+AGG - chr3_2:87554294-87554313 Msa0434640:CDS 35.0%
! TGATGATGCAAAGAAGAAGA+GGG - chr3_2:87554295-87554314 Msa0434640:CDS 35.0%
TACATGGTTTCGAAAATGCT+AGG - chr3_2:87554436-87554455 Msa0434640:five_prime_UTR 35.0%
CAAATTCTCCCATTTAAAGG+TGG + chr3_2:87554670-87554689 None:intergenic 35.0%
AATGGGAGAATTTGATTGGT+TGG - chr3_2:87554676-87554695 Msa0434640:five_prime_UTR 35.0%
! GGAATTTAGTTTAGGGAGCA+TGG + chr3_2:87551916-87551935 None:intergenic 40.0%
TCGTGAATGAAAATGGGTAC+TGG - chr3_2:87552067-87552086 Msa0434640:CDS 40.0%
CGTGAATGAAAATGGGTACT+GGG - chr3_2:87552068-87552087 Msa0434640:CDS 40.0%
GATTTAGATTGGTGCAAACG+TGG + chr3_2:87552235-87552254 None:intergenic 40.0%
ATTGTTCGACAACGAAGACT+TGG + chr3_2:87552274-87552293 None:intergenic 40.0%
AGGAGACTTTGTTGATCTTG+GGG + chr3_2:87552359-87552378 None:intergenic 40.0%
CTAGGAGACTTTGTTGATCT+TGG + chr3_2:87552361-87552380 None:intergenic 40.0%
TTGAAGAGGGACAACTTCAA+AGG + chr3_2:87552421-87552440 None:intergenic 40.0%
TGATTCATTCAGAGTAGCTG+TGG - chr3_2:87552536-87552555 Msa0434640:CDS 40.0%
CTGTTTGAACAGCGTGAAAA+CGG - chr3_2:87552562-87552581 Msa0434640:CDS 40.0%
TGTTTGAACAGCGTGAAAAC+GGG - chr3_2:87552563-87552582 Msa0434640:CDS 40.0%
!! TTGGTTCTGATAACAGGAGA+GGG + chr3_2:87552800-87552819 None:intergenic 40.0%
!! ACGTTCTTGGTTCTGATAAC+AGG + chr3_2:87552806-87552825 None:intergenic 40.0%
TGTTATCAGAACCAAGAACG+TGG - chr3_2:87552805-87552824 Msa0434640:CDS 40.0%
TACTCCTTTCTCCAACTTCT+AGG - chr3_2:87552888-87552907 Msa0434640:CDS 40.0%
! TCTGCATTTTCATCTGCTTC+GGG + chr3_2:87552926-87552945 None:intergenic 40.0%
! CTCTGCATTTTCATCTGCTT+CGG + chr3_2:87552927-87552946 None:intergenic 40.0%
!! ATCGGAGTACGTTTTGTTAG+GGG + chr3_2:87553011-87553030 None:intergenic 40.0%
!! CATCGGAGTACGTTTTGTTA+GGG + chr3_2:87553012-87553031 None:intergenic 40.0%
!! TCATCGGAGTACGTTTTGTT+AGG + chr3_2:87553013-87553032 None:intergenic 40.0%
!! TGTTCTGGAAACTGATACGA+TGG + chr3_2:87553101-87553120 None:intergenic 40.0%
AACACACGAAACATACGCTT+TGG - chr3_2:87553117-87553136 Msa0434640:CDS 40.0%
CTTACCGTTGAGAAGAATGA+CGG - chr3_2:87553360-87553379 Msa0434640:CDS 40.0%
ACTAACACTGTTACCTTCAC+CGG + chr3_2:87553431-87553450 None:intergenic 40.0%
! AACCTTTTCATCTTGACCGT+CGG + chr3_2:87553530-87553549 None:intergenic 40.0%
AAATTCCGGTTCATGCGTTT+GGG - chr3_2:87553617-87553636 Msa0434640:CDS 40.0%
! TTTGGGTTTGGTAGCAAAAG+CGG - chr3_2:87553634-87553653 Msa0434640:CDS 40.0%
AAGCGGTTATAGTCATGAAC+CGG - chr3_2:87553651-87553670 Msa0434640:CDS 40.0%
GCATTTGCAAAATGTGTTGG+CGG - chr3_2:87553682-87553701 Msa0434640:CDS 40.0%
!! TCTTTTGAGTGTTGTGGTTC+AGG - chr3_2:87553705-87553724 Msa0434640:CDS 40.0%
AGTGCTATATACTCTTGCAG+TGG - chr3_2:87553784-87553803 Msa0434640:CDS 40.0%
! AGAAGAAAGAGAGCTTTTGG+TGG - chr3_2:87553861-87553880 Msa0434640:CDS 40.0%
!! ATACTATCTCTTGACTTGCG+GGG + chr3_2:87553960-87553979 None:intergenic 40.0%
ATAGTATACGGCAGAGAACA+GGG - chr3_2:87553973-87553992 Msa0434640:intron 40.0%
ATATACGATCAACAGGGACA+AGG - chr3_2:87554031-87554050 Msa0434640:intron 40.0%
! CGTGCTCTTTTGATACAATC+TGG - chr3_2:87554165-87554184 Msa0434640:CDS 40.0%
! AAGAAGAGGGTGCGAAAATA+TGG - chr3_2:87554308-87554327 Msa0434640:CDS 40.0%
AGGAAGAAAACAATTGGGGA+TGG - chr3_2:87554558-87554577 Msa0434640:five_prime_UTR 40.0%
GGAAGAAAACAATTGGGGAT+GGG - chr3_2:87554559-87554578 Msa0434640:five_prime_UTR 40.0%
AAAACAATTGGGGATGGGAA+TGG - chr3_2:87554564-87554583 Msa0434640:five_prime_UTR 40.0%
! AGATTACGTGATGGAGTGTA+TGG - chr3_2:87554643-87554662 Msa0434640:five_prime_UTR 40.0%
TGTATGGCCCACCTTTAAAT+GGG - chr3_2:87554659-87554678 Msa0434640:five_prime_UTR 40.0%
AAAGGTGACGCAGAAGACAA+AGG + chr3_2:87551937-87551956 None:intergenic 45.0%
!! GAATGAAAATGGGTACTGGG+TGG - chr3_2:87552071-87552090 Msa0434640:CDS 45.0%
TTCAGGGTCTCGTGTACAAA+AGG + chr3_2:87552104-87552123 None:intergenic 45.0%
! CAGCTTCTTGGACTAGGATT+TGG + chr3_2:87552166-87552185 None:intergenic 45.0%
CTCAATCTAGCACAGCTTCT+TGG + chr3_2:87552178-87552197 None:intergenic 45.0%
TGGTGCAAACGTGGAGTTAA+AGG + chr3_2:87552226-87552245 None:intergenic 45.0%
! CGAAGACTTGGACTAGAAAC+TGG + chr3_2:87552262-87552281 None:intergenic 45.0%
GTTTGAACAGCGTGAAAACG+GGG - chr3_2:87552564-87552583 Msa0434640:CDS 45.0%
! GTACATGTGCTGCTATGCAA+GGG + chr3_2:87552637-87552656 None:intergenic 45.0%
AAGAGGAACGTCTTTCCATG+TGG + chr3_2:87552696-87552715 None:intergenic 45.0%
GAAAGACGTTCCTCTTCTAG+CGG - chr3_2:87552700-87552719 Msa0434640:CDS 45.0%
! GGAGAGGGATTTTCTGTAGT+AGG + chr3_2:87552785-87552804 None:intergenic 45.0%
!! CTTGGTTCTGATAACAGGAG+AGG + chr3_2:87552801-87552820 None:intergenic 45.0%
TTGAGACTGATCCACGTTCT+TGG + chr3_2:87552819-87552838 None:intergenic 45.0%
GAAGTTGGAGAAAGGAGTAG+AGG + chr3_2:87552887-87552906 None:intergenic 45.0%
! CTGCATTTTCATCTGCTTCG+GGG + chr3_2:87552925-87552944 None:intergenic 45.0%
CGAAGCAGATGAAAATGCAG+AGG - chr3_2:87552925-87552944 Msa0434640:CDS 45.0%
GATGACAACTGCGAGTTTCA+AGG - chr3_2:87552956-87552975 Msa0434640:CDS 45.0%
!! GTTTTGTTAGGGGTGGAAGT+AGG + chr3_2:87553001-87553020 None:intergenic 45.0%
!! GTCGCTGGTTTGAATGTCAT+CGG + chr3_2:87553029-87553048 None:intergenic 45.0%
GATGACATTCAAACCAGCGA+CGG - chr3_2:87553028-87553047 Msa0434640:CDS 45.0%
CGGTGATTCAAGAACTGTTC+AGG - chr3_2:87553054-87553073 Msa0434640:CDS 45.0%
ACTGATACGATGGCACATTC+TGG + chr3_2:87553091-87553110 None:intergenic 45.0%
AGCGTATGTTTCGTGTGTTC+TGG + chr3_2:87553116-87553135 None:intergenic 45.0%
CTTGTCACTGTTCTCGATGT+TGG - chr3_2:87553217-87553236 Msa0434640:CDS 45.0%
CATCTCTTGGTCCTTCTGAT+AGG - chr3_2:87553299-87553318 Msa0434640:CDS 45.0%
TGAGCCGTCATTCTTCTCAA+CGG + chr3_2:87553367-87553386 None:intergenic 45.0%
TTGAGAAGAATGACGGCTCA+GGG - chr3_2:87553367-87553386 Msa0434640:CDS 45.0%
GGATCGTAGAGAAAGAAACC+CGG - chr3_2:87553483-87553502 Msa0434640:CDS 45.0%
ATCCGACGGTCAAGATGAAA+AGG - chr3_2:87553525-87553544 Msa0434640:CDS 45.0%
GAAATTCCGGTTCATGCGTT+TGG - chr3_2:87553616-87553635 Msa0434640:CDS 45.0%
AGCGGTTATAGTCATGAACC+GGG - chr3_2:87553652-87553671 Msa0434640:CDS 45.0%
TTATAGTCATGAACCGGGTG+AGG - chr3_2:87553657-87553676 Msa0434640:CDS 45.0%
TTTGCAAATGCATCCTCACC+CGG + chr3_2:87553673-87553692 None:intergenic 45.0%
GGGCTTTCAATCTGATGATC+CGG - chr3_2:87553744-87553763 Msa0434640:CDS 45.0%
!! GTATATAGCACTGATCTCGG+CGG + chr3_2:87553776-87553795 None:intergenic 45.0%
GATAGTATACGGCAGAGAAC+AGG - chr3_2:87553972-87553991 Msa0434640:intron 45.0%
TCAGCTGAGCAATATGTTCG+TGG - chr3_2:87554195-87554214 Msa0434640:CDS 45.0%
TGAGCAATATGTTCGTGGCT+TGG - chr3_2:87554200-87554219 Msa0434640:CDS 45.0%
!! GCAAGAACAGGTTCAAGTTG+AGG - chr3_2:87554257-87554276 Msa0434640:CDS 45.0%
! AAGAGGGTGCGAAAATATGG+TGG - chr3_2:87554311-87554330 Msa0434640:CDS 45.0%
CAAGCTGAAGTAGGTGTAAG+TGG + chr3_2:87554351-87554370 None:intergenic 45.0%
CACTTACACCTACTTCAGCT+TGG - chr3_2:87554349-87554368 Msa0434640:CDS 45.0%
GTGTATGGCCCACCTTTAAA+TGG - chr3_2:87554658-87554677 Msa0434640:five_prime_UTR 45.0%
!! ATAATAAAAATAAAATAGAA+TGG + chr3_2:87551846-87551865 None:intergenic 5.0%
CAGGTAGAGAGAGAGAGAGA+GGG - chr3_2:87551725-87551744 Msa0434640:three_prime_UTR 50.0%
AGGTAGAGAGAGAGAGAGAG+GGG - chr3_2:87551726-87551745 Msa0434640:three_prime_UTR 50.0%
GGGAGAATAGATCTCTCTCG+AGG - chr3_2:87551746-87551765 Msa0434640:three_prime_UTR 50.0%
! TCTCGAGGCGTTTAACTGCA+GGG - chr3_2:87551761-87551780 Msa0434640:three_prime_UTR 50.0%
CTAGCACAGCTTCTTGGACT+AGG + chr3_2:87552172-87552191 None:intergenic 50.0%
AAAGGAGAGCGAGGAGAAGT+TGG + chr3_2:87552403-87552422 None:intergenic 50.0%
GACAACTTCAAAGGAGAGCG+AGG + chr3_2:87552412-87552431 None:intergenic 50.0%
! CGTACATGTGCTGCTATGCA+AGG + chr3_2:87552638-87552657 None:intergenic 50.0%
GTTGCAGACAGGGCAAACAA+GGG + chr3_2:87552672-87552691 None:intergenic 50.0%
TAGAGGCTCGTCATCATCGT+AGG + chr3_2:87552870-87552889 None:intergenic 50.0%
!! GGAGTACGTTTTGTTAGGGG+TGG + chr3_2:87553008-87553027 None:intergenic 50.0%
ATTCAAACCAGCGACGGAGT+CGG - chr3_2:87553034-87553053 Msa0434640:CDS 50.0%
CCAGCACACTTGATCCTTCA+CGG - chr3_2:87553179-87553198 Msa0434640:CDS 50.0%
GTCACTGTTCTCGATGTTGG+TGG - chr3_2:87553220-87553239 Msa0434640:CDS 50.0%
TAGCATGTGAAGCTTTGCGC+TGG + chr3_2:87553254-87553273 None:intergenic 50.0%
TCTCAACGGTAAGAGCCGTT+TGG + chr3_2:87553353-87553372 None:intergenic 50.0%
GTTGAGAAGAATGACGGCTC+AGG - chr3_2:87553366-87553385 Msa0434640:CDS 50.0%
!! ATCGTTGACCGGCTTGTTAC+CGG - chr3_2:87553409-87553428 Msa0434640:CDS 50.0%
TACCTTCACCGGTAACAAGC+CGG + chr3_2:87553420-87553439 None:intergenic 50.0%
AACAGCATGACGCTAGCAAC+CGG + chr3_2:87553505-87553524 None:intergenic 50.0%
AGCGTCATGCTGTTATCCGA+CGG - chr3_2:87553511-87553530 Msa0434640:CDS 50.0%
ACAACCACGCTTCTTCAACC+CGG - chr3_2:87553581-87553600 Msa0434640:CDS 50.0%
CCAAACCCAAACGCATGAAC+CGG + chr3_2:87553625-87553644 None:intergenic 50.0%
!! TGGCGGTCTTTTGAGTGTTG+TGG - chr3_2:87553699-87553718 Msa0434640:CDS 50.0%
TTCAATCTGATGATCCGGCC+CGG - chr3_2:87553749-87553768 Msa0434640:CDS 50.0%
TGTTGAGCTTAGGAGCCGTA+CGG - chr3_2:87553818-87553837 Msa0434640:CDS 50.0%
GTATAAATCGCCGAGCCGTA+CGG + chr3_2:87553836-87553855 None:intergenic 50.0%
AGAGTTCCAGCGTCAGCTTT+AGG - chr3_2:87553889-87553908 Msa0434640:CDS 50.0%
GAGTTCCAGCGTCAGCTTTA+GGG - chr3_2:87553890-87553909 Msa0434640:CDS 50.0%
CCTTACCGTCATCACATGGT+GGG + chr3_2:87553923-87553942 None:intergenic 50.0%
ACCTTACCGTCATCACATGG+TGG + chr3_2:87553924-87553943 None:intergenic 50.0%
GACACCTTACCGTCATCACA+TGG + chr3_2:87553927-87553946 None:intergenic 50.0%
CAACAGGGACAAGGATCGAA+AGG - chr3_2:87554040-87554059 Msa0434640:intron 50.0%
GGACAAGGATCGAAAGGTTG+AGG - chr3_2:87554046-87554065 Msa0434640:CDS 50.0%
AAGCCTCCTTGACTCAGCTA+TGG + chr3_2:87554094-87554113 None:intergenic 50.0%
TTGGAGGAGACAGCAAGAAC+AGG - chr3_2:87554245-87554264 Msa0434640:CDS 50.0%
ACCTACTTCAGCTTGGAGAG+CGG - chr3_2:87554356-87554375 Msa0434640:CDS 50.0%
GAAGCTGGCTAAGATGGCTA+TGG - chr3_2:87554383-87554402 Msa0434640:CDS 50.0%
CCTCTCTCTCTCTCTCTACC+TGG + chr3_2:87551727-87551746 None:intergenic 55.0%
CCAGGTAGAGAGAGAGAGAG+AGG - chr3_2:87551724-87551743 Msa0434640:three_prime_UTR 55.0%
! CTCTCGAGGCGTTTAACTGC+AGG - chr3_2:87551760-87551779 Msa0434640:three_prime_UTR 55.0%
AACAGCGTGAAAACGGGGCA+GGG - chr3_2:87552569-87552588 Msa0434640:CDS 55.0%
CAGGGCAAACAAGGGTAGCA+TGG + chr3_2:87552664-87552683 None:intergenic 55.0%
CGTTGCAGACAGGGCAAACA+AGG + chr3_2:87552673-87552692 None:intergenic 55.0%
TCCATGTGGCGTTGCAGACA+GGG + chr3_2:87552682-87552701 None:intergenic 55.0%
TTCCATGTGGCGTTGCAGAC+AGG + chr3_2:87552683-87552702 None:intergenic 55.0%
TTCTTGTGCGCCGCTAGAAG+AGG + chr3_2:87552713-87552732 None:intergenic 55.0%
CCGTGAAGGATCAAGTGTGC+TGG + chr3_2:87553182-87553201 None:intergenic 55.0%
GCTAAAACGCGCGATGCGTT+TGG - chr3_2:87553270-87553289 Msa0434640:CDS 55.0%
CTCAGGGTCAACGTTTGGCT+CGG - chr3_2:87553383-87553402 Msa0434640:CDS 55.0%
ACAGCATGACGCTAGCAACC+GGG + chr3_2:87553504-87553523 None:intergenic 55.0%
! CCGGTTCATGCGTTTGGGTT+TGG - chr3_2:87553622-87553641 Msa0434640:CDS 55.0%
TCAATCTGATGATCCGGCCC+GGG - chr3_2:87553750-87553769 Msa0434640:CDS 55.0%
AGACCCACGCTGTTGAGCTT+AGG - chr3_2:87553808-87553827 Msa0434640:CDS 55.0%
GCTCCTAAGCTCAACAGCGT+GGG + chr3_2:87553814-87553833 None:intergenic 55.0%
!! CCAGCGTCAGCTTTAGGGTA+CGG - chr3_2:87553895-87553914 Msa0434640:CDS 55.0%
!! CAGCGTCAGCTTTAGGGTAC+GGG - chr3_2:87553896-87553915 Msa0434640:CDS 55.0%
!! CCCACCATGTGATGACGGTA+AGG - chr3_2:87553920-87553939 Msa0434640:CDS 55.0%
CACGAGCCATAGCTGAGTCA+AGG - chr3_2:87554085-87554104 Msa0434640:CDS 55.0%
GAGCCATAGCTGAGTCAAGG+AGG - chr3_2:87554088-87554107 Msa0434640:CDS 55.0%
GGCTGAGAAGCTGGCTAAGA+TGG - chr3_2:87554377-87554396 Msa0434640:CDS 55.0%
TGGGGATGGGAATGGAGACA+AGG - chr3_2:87554572-87554591 Msa0434640:five_prime_UTR 55.0%
GGATGGGAATGGAGACAAGG+TGG - chr3_2:87554575-87554594 Msa0434640:five_prime_UTR 55.0%
GGAGACAAGGTGGTAGCAGA+CGG - chr3_2:87554585-87554604 Msa0434640:five_prime_UTR 55.0%
GAACAGCGTGAAAACGGGGC+AGG - chr3_2:87552568-87552587 Msa0434640:CDS 60.0%
ACAGCGTGAAAACGGGGCAG+GGG - chr3_2:87552570-87552589 Msa0434640:CDS 60.0%
!! TGAATCACCGACTCCGTCGC+TGG + chr3_2:87553044-87553063 None:intergenic 60.0%
TCTATCGGAGCTCGCCGTGA+AGG + chr3_2:87553196-87553215 None:intergenic 60.0%
GACGGCTCAGGGTCAACGTT+TGG - chr3_2:87553378-87553397 Msa0434640:CDS 60.0%
! TGGCTCGGCGTATCGTTGAC+CGG - chr3_2:87553398-87553417 Msa0434640:CDS 60.0%
!! GACCGGCTTGTTACCGGTGA+AGG - chr3_2:87553415-87553434 Msa0434640:CDS 60.0%
! CGAACCGGGTTGAAGAAGCG+TGG + chr3_2:87553588-87553607 None:intergenic 60.0%
GGCTCCTAAGCTCAACAGCG+TGG + chr3_2:87553815-87553834 None:intergenic 60.0%
AGCTTAGGAGCCGTACGGCT+CGG - chr3_2:87553823-87553842 Msa0434640:CDS 60.0%
CCGTACCCTAAAGCTGACGC+TGG + chr3_2:87553898-87553917 None:intergenic 60.0%
CGGGTCCCACCATGTGATGA+CGG - chr3_2:87553915-87553934 Msa0434640:CDS 60.0%
! TCGTGGCTTGGAAGCTGAGC+TGG - chr3_2:87554212-87554231 Msa0434640:CDS 60.0%
! TGGCTTGGAAGCTGAGCTGG+CGG - chr3_2:87554215-87554234 Msa0434640:CDS 60.0%
CTGAGCTGGCGGAGCTTCAT+TGG - chr3_2:87554226-87554245 Msa0434640:CDS 60.0%
AGCTGGCGGAGCTTCATTGG+AGG - chr3_2:87554229-87554248 Msa0434640:CDS 60.0%
GCCGCTCTCCAAGCTGAAGT+AGG + chr3_2:87554360-87554379 None:intergenic 60.0%
TTGGAGAGCGGCTGAGAAGC+TGG - chr3_2:87554368-87554387 Msa0434640:CDS 60.0%
CGTGAAAACGGGGCAGGGGA+AGG - chr3_2:87552574-87552593 Msa0434640:CDS 65.0%
GCCCTGTCTGCAACGCCACA+TGG - chr3_2:87552678-87552697 Msa0434640:CDS 65.0%
! AAAGCACCACCGCCACTCCG+CGG - chr3_2:87553151-87553170 Msa0434640:CDS 65.0%
!! CAAGTGTGCTGGTTCCGCCG+CGG + chr3_2:87553171-87553190 None:intergenic 65.0%
!! TAGCACTGATCTCGGCGGCC+CGG + chr3_2:87553771-87553790 None:intergenic 65.0%
CAAGGTGGTAGCAGACGGCG+CGG - chr3_2:87554590-87554609 Msa0434640:five_prime_UTR 65.0%
!! AGCACTGATCTCGGCGGCCC+GGG + chr3_2:87553770-87553789 None:intergenic 70.0%
CTGGTTCCGCCGCGGAGTGG+CGG + chr3_2:87553163-87553182 None:intergenic 75.0%
!! GTGCTGGTTCCGCCGCGGAG+TGG + chr3_2:87553166-87553185 None:intergenic 75.0%
! GCACCACCGCCACTCCGCGG+CGG - chr3_2:87553154-87553173 Msa0434640:CDS 80.0%
! GTTCCGCCGCGGAGTGGCGG+TGG + chr3_2:87553160-87553179 None:intergenic 80.0%
! CTGATCTCGGCGGCCCGGGC+CGG + chr3_2:87553766-87553785 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 87551717 87554788 87551717 ID=Msa0434640;Name=Msa0434640
chr3_2 mRNA 87551717 87554788 87551717 ID=Msa0434640-mRNA-1;Parent=Msa0434640;Name=Msa0434640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=356|1|1|1|1|1|2|324|767
chr3_2 exon 87551717 87553957 87551717 ID=Msa0434640-mRNA-1:exon:25528;Parent=Msa0434640-mRNA-1
chr3_2 exon 87554046 87554788 87554046 ID=Msa0434640-mRNA-1:exon:25527;Parent=Msa0434640-mRNA-1
chr3_2 five_prime_UTR 87554433 87554788 87554433 ID=Msa0434640-mRNA-1:five_prime_utr;Parent=Msa0434640-mRNA-1
chr3_2 CDS 87554046 87554432 87554046 ID=Msa0434640-mRNA-1:cds;Parent=Msa0434640-mRNA-1
chr3_2 CDS 87552041 87553957 87552041 ID=Msa0434640-mRNA-1:cds;Parent=Msa0434640-mRNA-1
chr3_2 three_prime_UTR 87551717 87552040 87551717 ID=Msa0434640-mRNA-1:three_prime_utr;Parent=Msa0434640-mRNA-1
Gene Sequence

>Msa0434640

ATGAAAATGGGTACTGGGTGGAGAAGAGCCTTTTGTACACGAGACCCTGAATCTACCATATCAGATAATAAGAACAATAACAACGGAAGTCCAAATCCTAGTCCAAGAAGCTGTGCTAGATTGAGTTTTCTTTCTGGTGGTAGTAGTAATCCTTTAACTCCACGTTTGCACCAATCTAAATCTCAACCAGTTTCTAGTCCAAGTCTTCGTTGTCGAACAATAACTGAAGCAGCTTCTCAAATAACAAATGATAGCCCCAGATTTCAAAGTAGCAAAAGTAGCACCCCAAGATCAACAAAGTCTCCTAGAGTTAACTCAATATCAAATCCAACTTCTCCTCGCTCTCCTTTGAAGTTGTCCCTCTTCAAAAACAGCTTCAAATTCAGGAGTAGCTGTGGAATCTGTTTGAACAGCGTGAAAACGGGGCAGGGGAAGGCAATATACACAGCAGAATGTGCACATGCTTTTCATTTCCCTTGCATAGCAGCACATGTACGCAACCATGCTACCCTTGTTTGCCCTGTCTGCAACGCCACATGGAAAGACGTTCCTCTTCTAGCGGCGCACAAGAATCTCTCTTCTTCACAAGAAATTCCCAATGCAATTCCAAACCACAAAATACCTACTACAGAAAATCCCTCTCCTGTTATCAGAACCAAGAACGTGGATCAGTCTCAACAAACTAATCATTCTGAATCAATAAGATCCTACGATGATGACGAGCCTCTACTCCTTTCTCCAACTTCTAGGATTAACACTATCCCCGAAGCAGATGAAAATGCAGAGGAAGAAGATGATGACAACTGCGAGTTTCAAGGATTTTTCGTCAACGCAAAACCTACTTCCACCCCTAACAAAACGTACTCCGATGACATTCAAACCAGCGACGGAGTCGGTGATTCAAGAACTGTTCAGGTGAAGTTAATGCCAGAATGTGCCATCGTATCAGTTTCCAGAACACACGAAACATACGCTTTGGTTTTAAAAGTAAAAGCACCACCGCCACTCCGCGGCGGAACCAGCACACTTGATCCTTCACGGCGAGCTCCGATAGATCTTGTCACTGTTCTCGATGTTGGTGGAAGCATGTCCAGCGCAAAGCTTCACATGCTAAAACGCGCGATGCGTTTGGTTATTTCATCTCTTGGTCCTTCTGATAGGCTTTCAATTGTTGCTTTTTCGTCTATTTCCAAACGGCTCTTACCGTTGAGAAGAATGACGGCTCAGGGTCAACGTTTGGCTCGGCGTATCGTTGACCGGCTTGTTACCGGTGAAGGTAACAGTGTTAGTGAAGCTTTGAGAAAAGCAACTACAGTTTTGGAGGATCGTAGAGAAAGAAACCCGGTTGCTAGCGTCATGCTGTTATCCGACGGTCAAGATGAAAAGGTTAAGAATCAAAATCAAAATCAACGGAAGATGTACAACCACGCTTCTTCAACCCGGTTCGCTCATATTGAAATTCCGGTTCATGCGTTTGGGTTTGGTAGCAAAAGCGGTTATAGTCATGAACCGGGTGAGGATGCATTTGCAAAATGTGTTGGCGGTCTTTTGAGTGTTGTGGTTCAGGATTTAAGAGTTCAACTGGGCTTTCAATCTGATGATCCGGCCCGGGCCGCCGAGATCAGTGCTATATACTCTTGCAGTGGAAGACCCACGCTGTTGAGCTTAGGAGCCGTACGGCTCGGCGATTTATACGCTGAAGAAGAAAGAGAGCTTTTGGTGGAGATGAGAGTTCCAGCGTCAGCTTTAGGGTACGGGTCCCACCATGTGATGACGGTAAGGTGTCTTTATAAAGACCCCGCAAGTCAAGAGATAGTATACGGCAGAGAACAGGGACTTACAGTGCAACTACCTCAGAATCAATCTCAGAATATACGATCAACAGGGACAAGGATCGAAAGGTTGAGGAATCTTTTCATAACAACACGAGCCATAGCTGAGTCAAGGAGGCTTTTAGATCATAACAGTGACTTCACAAGTGCTCATCATTTACTTGCTTCGGCTCGTGCTCTTTTGATACAATCTGGCTCAACTTCAGCTGAGCAATATGTTCGTGGCTTGGAAGCTGAGCTGGCGGAGCTTCATTGGAGGAGACAGCAAGAACAGGTTCAAGTTGAGGCTCAGCAGCAACAAATGATGATGCAAAGAAGAAGAGGGTGCGAAAATATGGTGGATGAAAATGGTGAGCCACTTACACCTACTTCAGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGATGGCTATGGTCAAGAAGTCTTTGAATAAAGTCAGTGACTTACATGGTTTCGAAAATGCTAGGTTTTGA
Protein sequence

>Msa0434640

MKMGTGWRRAFCTRDPESTISDNKNNNNGSPNPSPRSCARLSFLSGGSSNPLTPRLHQSKSQPVSSPSLRCRTITEAASQITNDSPRFQSSKSSTPRSTKSPRVNSISNPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGKAIYTAECAHAFHFPCIAAHVRNHATLVCPVCNATWKDVPLLAAHKNLSSSQEIPNAIPNHKIPTTENPSPVIRTKNVDQSQQTNHSESIRSYDDDEPLLLSPTSRINTIPEADENAEEEDDDNCEFQGFFVNAKPTSTPNKTYSDDIQTSDGVGDSRTVQVKLMPECAIVSVSRTHETYALVLKVKAPPPLRGGTSTLDPSRRAPIDLVTVLDVGGSMSSAKLHMLKRAMRLVISSLGPSDRLSIVAFSSISKRLLPLRRMTAQGQRLARRIVDRLVTGEGNSVSEALRKATTVLEDRRERNPVASVMLLSDGQDEKVKNQNQNQRKMYNHASSTRFAHIEIPVHAFGFGSKSGYSHEPGEDAFAKCVGGLLSVVVQDLRVQLGFQSDDPARAAEISAIYSCSGRPTLLSLGAVRLGDLYAEEERELLVEMRVPASALGYGSHHVMTVRCLYKDPASQEIVYGREQGLTVQLPQNQSQNIRSTGTRIERLRNLFITTRAIAESRRLLDHNSDFTSAHHLLASARALLIQSGSTSAEQYVRGLEAELAELHWRRQQEQVQVEAQQQQMMMQRRRGCENMVDENGEPLTPTSAWRAAEKLAKMAMVKKSLNKVSDLHGFENARF*