AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0478410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478410 MtrunA17_Chr3g0141061 95.425 765 23 7 1 762 1 756 0.0 1480
Msa0478410 MtrunA17_Chr5g0411491 44.106 789 326 24 3 774 1 691 1.71e-178 528
Msa0478410 MtrunA17_Chr8g0366871 34.387 791 320 23 3 774 1 611 7.35e-114 358
Msa0478410 MtrunA17_Chr2g0326911 31.664 679 347 19 132 759 70 682 5.59e-88 292
Msa0478410 MtrunA17_Chr1g0199601 33.387 620 326 18 132 710 79 652 3.69e-86 288
Msa0478410 MtrunA17_Chr4g0028831 32.524 618 320 19 132 710 71 630 3.08e-80 271
Msa0478410 MtrunA17_Chr2g0290981 29.792 480 248 18 133 596 95 501 1.61e-36 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478410 AT5G49665.1 55.500 800 268 27 3 774 1 740 0.0 731
Msa0478410 AT2G22680.1 41.875 800 320 27 3 774 1 683 5.22e-161 483
Msa0478410 AT4G37890.2 41.488 793 361 22 3 774 1 711 8.29e-155 468
Msa0478410 AT4G37890.1 39.951 821 362 24 3 774 1 739 2.85e-152 462
Msa0478410 AT5G65683.1 37.978 811 370 29 3 774 1 717 1.60e-127 397
Msa0478410 AT2G38970.1 33.642 648 341 20 94 710 32 621 8.59e-95 310
Msa0478410 AT3G54780.1 33.556 599 294 18 132 704 73 593 2.29e-87 290
Msa0478410 AT5G60710.1 33.917 628 336 15 109 710 48 622 2.84e-87 291
Msa0478410 AT3G54780.3 32.530 581 281 16 132 704 74 551 5.42e-82 275
Msa0478410 AT3G54780.2 32.530 581 281 16 132 704 73 550 6.06e-82 275
Msa0478410 AT3G54780.5 32.530 581 281 16 132 704 122 599 1.69e-81 275
Msa0478410 AT3G54780.4 32.530 581 281 16 132 704 123 600 1.83e-81 275
Msa0478410 AT1G08050.1 30.653 597 291 17 133 704 69 567 1.75e-77 263

Find 227 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAATTCTCCCATTTAA+AGG 0.203174 3_3:-83126218 None:intergenic
AAGACAAAGGAATTTAGTTT+AGG 0.233441 3_3:-83123454 None:intergenic
GTGTATGGCCCACCTTTAAA+TGG 0.258034 3_3:+83126206 Msa0478410:three_prime_UTR
CGAAGACTTGGACTAGAAAT+TGG 0.260403 3_3:-83123791 None:intergenic
CTCAATCTAGCACAGCTTCT+TGG 0.275682 3_3:-83123707 None:intergenic
AGCGTATGTTTCGTGTGTTC+TGG 0.277675 3_3:-83124654 None:intergenic
TAGGAGACTTTGTTGATCTT+GGG 0.283485 3_3:-83123889 None:intergenic
TTGAGACTGATCCACGTTCT+TGG 0.283557 3_3:-83124348 None:intergenic
AAAGAACTTATTATAATTAG+AGG 0.284006 3_3:+83126092 Msa0478410:three_prime_UTR
GAGAAAAGCAACTACAGTTT+TGG 0.284089 3_3:+83125000 Msa0478410:CDS
CAGCTTCTTGGACTAGGATT+TGG 0.293853 3_3:-83123695 None:intergenic
AGACAAAGGAATTTAGTTTA+GGG 0.294259 3_3:-83123453 None:intergenic
CATCTCTTGGTCCTTCTGAT+AGG 0.296073 3_3:+83124840 Msa0478410:CDS
CTACTCCTTTCTCCAACTTC+TGG 0.298621 3_3:+83124419 Msa0478410:CDS
AGAGTTCCAGCGTCAGCTTT+AGG 0.303683 3_3:+83125439 Msa0478410:CDS
TTATCTGATATGGTAGATTC+AGG 0.310453 3_3:-83123647 None:intergenic
CGTTTGGTTATTTCATCTCT+TGG 0.311758 3_3:+83124827 Msa0478410:CDS
GAAATTCCGGTTCATGCGTT+TGG 0.312433 3_3:+83125166 Msa0478410:CDS
GAAGAAAGAATGGATCTAAA+AGG 0.313399 3_3:-83123485 None:intergenic
CTAGGAGACTTTGTTGATCT+TGG 0.320258 3_3:-83123890 None:intergenic
AAGAAGAGGGTGCGAAAATA+TGG 0.323943 3_3:+83125858 Msa0478410:CDS
TATACTATCTCTTGACTTGC+GGG 0.335850 3_3:-83125508 None:intergenic
CTGAGCTGGCGGAGCTTCAT+TGG 0.336931 3_3:+83125776 Msa0478410:CDS
GAGTTCCAGCGTCAGCTTTA+GGG 0.338033 3_3:+83125440 Msa0478410:CDS
ACGTTCTTGGTTCTGATAAC+AGG 0.345062 3_3:-83124335 None:intergenic
TTCCATGTGGCGTTGCAGAC+AGG 0.346447 3_3:-83124212 None:intergenic
ATCGTTGACCGGCTTGTTAC+CGG 0.348514 3_3:+83124950 Msa0478410:CDS
GATAGTATACGGCAGAGAAC+AGG 0.349583 3_3:+83125522 Msa0478410:CDS
TCAGGATTTAAGAGTTCAAC+TGG 0.352337 3_3:+83125273 Msa0478410:CDS
GTTCGCTCATATTGAAATTC+CGG 0.357741 3_3:+83125153 Msa0478410:CDS
GTTGTTCTTATTATCTGATA+TGG 0.361487 3_3:-83123657 None:intergenic
AAATTCCGGTTCATGCGTTT+GGG 0.366480 3_3:+83125167 Msa0478410:CDS
AATTAGAGGAAGAAAACAAT+TGG 0.378258 3_3:+83126106 Msa0478410:three_prime_UTR
CCGGTTCATGCGTTTGGGTT+TGG 0.382763 3_3:+83125172 Msa0478410:CDS
ACTGATACGATGGCACATTC+TGG 0.382845 3_3:-83124629 None:intergenic
CGGTGATTCAAGAACTGTTC+AGG 0.383564 3_3:+83124595 Msa0478410:CDS
CTGTTTGAACAGCGTGAAAA+CGG 0.390254 3_3:+83124094 Msa0478410:CDS
GCTAAAACGCGCGATGCGTT+TGG 0.390616 3_3:+83124811 Msa0478410:CDS
TGAAGAAGAAAGAGAGCTTT+TGG 0.391859 3_3:+83125408 Msa0478410:CDS
TCTCAGAATATACGATCAAC+AGG 0.393682 3_3:+83125574 Msa0478410:CDS
TTTAAATGGGAGAATTTGAT+TGG 0.394069 3_3:+83126220 Msa0478410:three_prime_UTR
ATTAGAGGAAGAAAACAATT+GGG 0.396402 3_3:+83126107 Msa0478410:three_prime_UTR
TGTTTGAACAGCGTGAAAAC+GGG 0.401641 3_3:+83124095 Msa0478410:CDS
AACAGCATGACGCTAGCAAC+CGG 0.405649 3_3:-83125043 None:intergenic
TTCTCAAAGTCTGAAACAAA+AGG 0.415025 3_3:+83123550 Msa0478410:five_prime_UTR
GAAAATATGGTGGATGAAAA+TGG 0.415794 3_3:+83125871 Msa0478410:CDS
GATGACAACTGCGAGTTTCA+AGG 0.418436 3_3:+83124497 Msa0478410:CDS
CATGGACTATGATCTTGAAA+AGG 0.419602 3_3:-83126317 None:intergenic
CTAGCACAGCTTCTTGGACT+AGG 0.420558 3_3:-83123701 None:intergenic
TGCTCATCATTTACTTGCCT+CGG 0.421096 3_3:+83125690 Msa0478410:CDS
CTCTCGAGGCGTTTAACTGC+AGG 0.422107 3_3:+83123276 Msa0478410:five_prime_UTR
AAGCGGTTATAGTCATGAAC+CGG 0.424642 3_3:+83125201 Msa0478410:CDS
TCGTGGCTTGGAAGCTGAGC+TGG 0.424913 3_3:+83125762 Msa0478410:CDS
CTGATCTCGGCGGCCCGGGC+CGG 0.425651 3_3:-83125313 None:intergenic
CTCCAACTTCTGGTGGTGGA+AGG 0.428818 3_3:+83124429 Msa0478410:CDS
AACACACGAAACATACGCTT+TGG 0.429505 3_3:+83124658 Msa0478410:CDS
AATGGGAGAATTTGATTGGT+TGG 0.430331 3_3:+83126224 Msa0478410:three_prime_UTR
AAAGGAGAGCGAGGAGAAGT+TGG 0.431736 3_3:-83123932 None:intergenic
GGCTGAGAAGCTGGCTAAGA+TGG 0.431860 3_3:+83125927 Msa0478410:CDS
GACGGCTCAGGGTCAACGTT+TGG 0.433573 3_3:+83124919 Msa0478410:CDS
TGAATCACCGACTCCGTCGC+TGG 0.435437 3_3:-83124582 None:intergenic
AAATTGGTTGAGATTTAGAT+TGG 0.435546 3_3:-83123775 None:intergenic
TTCAATCTGATGATCCGGCC+CGG 0.444036 3_3:+83125299 Msa0478410:CDS
TCTCAACGGTAAGAGCCGTT+TGG 0.445243 3_3:-83124891 None:intergenic
CCAGCGTCAGCTTTAGGGTA+CGG 0.445543 3_3:+83125445 Msa0478410:CDS
GCAAGTCAAGAGATAGTATA+CGG 0.447444 3_3:+83125511 Msa0478410:CDS
CCAAACCCAAACGCATGAAC+CGG 0.450222 3_3:-83125172 None:intergenic
CGTATATTCTGAGATTGATT+CGG 0.452393 3_3:-83125565 None:intergenic
CTTTCTCCAACTTCTGGTGG+TGG 0.453090 3_3:+83124425 Msa0478410:CDS
GAATTTCAATATGAGCGAAC+CGG 0.453411 3_3:-83125150 None:intergenic
TTGGAGAGCGGCTGAGAAGC+TGG 0.453516 3_3:+83125918 Msa0478410:CDS
TTGTGGTTTGGAATTGCATT+GGG 0.453923 3_3:-83124287 None:intergenic
CAGCGTCAGCTTTAGGGTAC+GGG 0.456057 3_3:+83125446 Msa0478410:CDS
TGGTGCAAACGTGGAGTTGA+AGG 0.458578 3_3:-83123755 None:intergenic
GGAATTTAGTTTAGGGAGCA+TGG 0.462544 3_3:-83123446 None:intergenic
GTTCCGCCGCGGAGTGGCGG+TGG 0.462679 3_3:-83124698 None:intergenic
CGTTGCAGACAGGGCAAACA+AGG 0.468208 3_3:-83124202 None:intergenic
TCGTGAATGAAAATGGGTAC+TGG 0.469774 3_3:+83123596 Msa0478410:exon
CTTGTCACTGTTCTCGATGT+TGG 0.470383 3_3:+83124758 Msa0478410:CDS
TTTGATATTGAGTTAACTCT+AGG 0.472211 3_3:-83123908 None:intergenic
TTGGAGGAGACAGCAAGAAC+AGG 0.474369 3_3:+83125795 Msa0478410:CDS
GGGCTTTCAATCTGATGATC+CGG 0.476077 3_3:+83125294 Msa0478410:CDS
CGTGAAAACGGGGCAGGGGA+AGG 0.476652 3_3:+83124106 Msa0478410:CDS
ATCCTTCCACCACCAGAAGT+TGG 0.478748 3_3:-83124431 None:intergenic
TGGCTCGGCGTATCGTTGAC+CGG 0.478939 3_3:+83124939 Msa0478410:CDS
ACTGACACTGTTACCTTCAC+CGG 0.479335 3_3:-83124969 None:intergenic
AGACCCACGCTGTTGAGCTT+AGG 0.482490 3_3:+83125358 Msa0478410:CDS
TTCAGGGTCTCGTGTACAAA+AGG 0.483863 3_3:-83123630 None:intergenic
GTTGAGAAGAATGACGGCTC+AGG 0.487316 3_3:+83124907 Msa0478410:CDS
GAGCTCGCCGTGAAGGATCA+AGG 0.488136 3_3:-83124727 None:intergenic
AGCACTGATCTCGGCGGCCC+GGG 0.490522 3_3:-83125317 None:intergenic
ATCCGACGGTCAAGATGAAA+AGG 0.492993 3_3:+83125066 Msa0478410:CDS
CTCAGGGTCAACGTTTGGCT+CGG 0.493080 3_3:+83124924 Msa0478410:CDS
AGGAGACTTTGTTGATCTTG+GGG 0.496143 3_3:-83123888 None:intergenic
TAGCACTGATCTCGGCGGCC+CGG 0.497684 3_3:-83125318 None:intergenic
TCAGCTGAGCAATATGTTCG+TGG 0.499359 3_3:+83125745 Msa0478410:CDS
GAATTTAGTTTAGGGAGCAT+GGG 0.504116 3_3:-83123445 None:intergenic
GTATACTATCTCTTGACTTG+CGG 0.504508 3_3:-83125509 None:intergenic
GACCGGCTTGTTACCGGTGA+AGG 0.505460 3_3:+83124956 Msa0478410:CDS
GAACAGCGTGAAAACGGGGC+AGG 0.506795 3_3:+83124100 Msa0478410:CDS
CTCCTTTCTCCAACTTCTGG+TGG 0.508187 3_3:+83124422 Msa0478410:CDS
AAGTTCAACGAACTAGACTT+TGG 0.508515 3_3:-83123331 None:intergenic
GTCACTGTTCTCGATGTTGG+TGG 0.508779 3_3:+83124761 Msa0478410:CDS
CAAGCTGAAGTAGGTGTAAG+TGG 0.509486 3_3:-83125898 None:intergenic
ATGGACTATGATCTTGAAAA+GGG 0.509533 3_3:-83126316 None:intergenic
TGTATGGCCCACCTTTAAAT+GGG 0.510023 3_3:+83126207 Msa0478410:three_prime_UTR
TCAATCTGATGATCCGGCCC+GGG 0.510856 3_3:+83125300 Msa0478410:CDS
CCAGCACCCTTGATCCTTCA+CGG 0.510915 3_3:+83124720 Msa0478410:CDS
AAAACAATTGGGGATGGGAA+TGG 0.515689 3_3:+83126118 Msa0478410:three_prime_UTR
TCCATGTGGCGTTGCAGACA+GGG 0.516401 3_3:-83124211 None:intergenic
TATCTGATATGGTAGATTCA+GGG 0.517929 3_3:-83123646 None:intergenic
AGCTGGCGGAGCTTCATTGG+AGG 0.520138 3_3:+83125779 Msa0478410:CDS
TTTGTGGTTTGGAATTGCAT+TGG 0.521882 3_3:-83124288 None:intergenic
AATAAAGTCAGTGACTTACA+TGG 0.522082 3_3:+83125970 Msa0478410:CDS
ACTATCTTCTAATGCACAAA+GGG 0.522294 3_3:-83126167 None:intergenic
AGCTTAGGAGCCGTACGGCT+CGG 0.525452 3_3:+83125373 Msa0478410:CDS
CCGTGAAGGATCAAGGGTGC+TGG 0.526274 3_3:-83124720 None:intergenic
TCTCAAAGTCTGAAACAAAA+GGG 0.527985 3_3:+83123551 Msa0478410:five_prime_UTR
TGATTATGTGATGGAGTGTA+TGG 0.529524 3_3:+83126191 Msa0478410:three_prime_UTR
TTCTTGTGCGCCGCTAGAAG+AGG 0.529764 3_3:-83124242 None:intergenic
ATTGTTCGACAACGAAGACT+TGG 0.533284 3_3:-83123803 None:intergenic
TTTGCAAATGCATCCTCACC+CGG 0.533505 3_3:-83125220 None:intergenic
TTGAAGAGGGACAACTTCAA+AGG 0.534296 3_3:-83123950 None:intergenic
TGAGCAATATGTTCGTGGCT+TGG 0.534296 3_3:+83125750 Msa0478410:CDS
AACAGCGTGAAAACGGGGCA+GGG 0.537796 3_3:+83124101 Msa0478410:CDS
CCCACCATGTGATGACGGTA+AGG 0.540505 3_3:+83125470 Msa0478410:CDS
GTCGCTGGTTTGAATGTCAT+CGG 0.540958 3_3:-83124567 None:intergenic
CTGGTTCCGCCGCGGAGTGG+CGG 0.541009 3_3:-83124701 None:intergenic
GTGCTGGTTCCGCCGCGGAG+TGG 0.541711 3_3:-83124704 None:intergenic
AGGAAGAAAACAATTGGGGA+TGG 0.542265 3_3:+83126112 Msa0478410:three_prime_UTR
AATTTCAATATGAGCGAACC+GGG 0.543870 3_3:-83125149 None:intergenic
CACCACCAGAAGTTGGAGAA+AGG 0.546899 3_3:-83124424 None:intergenic
TCTATCGGAGCTCGCCGTGA+AGG 0.548944 3_3:-83124734 None:intergenic
CACTTACACCTACTTCAGCT+TGG 0.550476 3_3:+83125899 Msa0478410:CDS
CAAATTCTCCCATTTAAAGG+TGG 0.550723 3_3:-83126215 None:intergenic
GCCCTGTCTGCAACGCCACA+TGG 0.554667 3_3:+83124210 Msa0478410:CDS
GGACAAGGATCGAAAGGTTG+AGG 0.556824 3_3:+83125596 Msa0478410:CDS
TAGCATGCGAAGCTTTGCGC+TGG 0.557808 3_3:-83124792 None:intergenic
AGAGTATATAGCACTGATCT+CGG 0.558479 3_3:-83125326 None:intergenic
TGTTTGATTCAGAGTAGCTG+TGG 0.558848 3_3:+83124068 Msa0478410:intron
TACATGGTTTCGAAAATGCT+AGG 0.561353 3_3:+83125986 Msa0478410:CDS
CGTACATGTGCTGCTATGCA+AGG 0.562258 3_3:-83124167 None:intergenic
AAATTCTCCCATTTAAAGGT+GGG 0.565551 3_3:-83126214 None:intergenic
ACAGCGTGAAAACGGGGCAG+GGG 0.566472 3_3:+83124102 Msa0478410:CDS
ATGATGATGCAAAGAAGAAG+AGG 0.566569 3_3:+83125844 Msa0478410:CDS
TTGGTTCTGATAACAGGAGA+GGG 0.567897 3_3:-83124329 None:intergenic
TTATAGTCATGAACCGGGTG+AGG 0.569511 3_3:+83125207 Msa0478410:CDS
GAAGCTGGCTAAGATGGCTA+TGG 0.570165 3_3:+83125933 Msa0478410:CDS
TGGCTTGGAAGCTGAGCTGG+CGG 0.571971 3_3:+83125765 Msa0478410:CDS
AAGAGGGTGCGAAAATATGG+TGG 0.572627 3_3:+83125861 Msa0478410:CDS
GGAAGAAAACAATTGGGGAT+GGG 0.575040 3_3:+83126113 Msa0478410:three_prime_UTR
CAGGGCAAACAAGGGTAGCA+TGG 0.577383 3_3:-83124193 None:intergenic
TACTATCTTCTAATGCACAA+AGG 0.577812 3_3:-83126168 None:intergenic
AAGCCTCCTTGACTCAGCTA+TGG 0.578141 3_3:-83125641 None:intergenic
TTGAGAAGAATGACGGCTCA+GGG 0.581626 3_3:+83124908 Msa0478410:CDS
GATGCATTTGCAAAATGTGT+TGG 0.582126 3_3:+83125229 Msa0478410:CDS
CGTGAATGAAAATGGGTACT+GGG 0.582287 3_3:+83123597 Msa0478410:exon
TACACAAAATACAAACAGCC+AGG 0.582719 3_3:+83123220 None:intergenic
GCATTTGCAAAATGTGTTGG+CGG 0.583323 3_3:+83125232 Msa0478410:CDS
GTATAAATCGCCGAGCCGTA+CGG 0.585496 3_3:-83125383 None:intergenic
AGCTCGCCGTGAAGGATCAA+GGG 0.586235 3_3:-83124726 None:intergenic
ACAACCACGCTTCTTCAACC+CGG 0.593144 3_3:+83125131 Msa0478410:CDS
CGGGTCCCACCATGTGATGA+CGG 0.594441 3_3:+83125465 Msa0478410:CDS
TTTGGGTTTGGTAGCAAAAG+CGG 0.594571 3_3:+83125184 Msa0478410:CDS
GAAGTTGGAGAAAGGAGTAG+AGG 0.596574 3_3:-83124416 None:intergenic
AGAATCAAAATCAAAATCAA+CGG 0.596605 3_3:+83125101 Msa0478410:CDS
AATAAGAACAACAACAACAA+TGG 0.598059 3_3:+83123668 Msa0478410:CDS
ATAGTATACGGCAGAGAACA+GGG 0.598674 3_3:+83125523 Msa0478410:CDS
TACCTTCACCGGTAACAAGC+CGG 0.599061 3_3:-83124958 None:intergenic
CAACAGGGACAAGGATCGAA+AGG 0.599723 3_3:+83125590 Msa0478410:CDS
AAGATAGTATGATTATGTGA+TGG 0.601842 3_3:+83126182 Msa0478410:three_prime_UTR
TGTTCTGGAAACTGATACGA+TGG 0.602317 3_3:-83124639 None:intergenic
GGAGACAAGGTGGTAGCAGA+CGG 0.603225 3_3:+83126139 Msa0478410:three_prime_UTR
GATTTAGATTGGTGCAAACG+TGG 0.604999 3_3:-83123764 None:intergenic
AGAACAGTGACAAGATCTAT+CGG 0.606607 3_3:-83124749 None:intergenic
TAGAGGCTCGTCATCATCGT+AGG 0.609610 3_3:-83124399 None:intergenic
GCCGCTCTCCAAGCTGAAGT+AGG 0.612752 3_3:-83125907 None:intergenic
TTAGAGGAAGAAAACAATTG+GGG 0.614763 3_3:+83126108 Msa0478410:three_prime_UTR
ATATTCTGAGATTGATTCGG+AGG 0.615353 3_3:-83125562 None:intergenic
TGGGGATGGGAATGGAGACA+AGG 0.616259 3_3:+83126126 Msa0478410:three_prime_UTR
TCTCGAGGCGTTTAACTGCA+GGG 0.616353 3_3:+83123277 Msa0478410:five_prime_UTR
ACCTACTTCAGCTTGGAGAG+CGG 0.616379 3_3:+83125906 Msa0478410:CDS
GCAAGAACAGGTTCAAGTTG+AGG 0.620780 3_3:+83125807 Msa0478410:CDS
GACAACTTCAAAGGAGAGCG+AGG 0.621814 3_3:-83123941 None:intergenic
CTTGGTTCTGATAACAGGAG+AGG 0.622597 3_3:-83124330 None:intergenic
GGATGGGAATGGAGACAAGG+TGG 0.622694 3_3:+83126129 Msa0478410:three_prime_UTR
CACGAGCCATAGCTGAGTCA+AGG 0.623356 3_3:+83125635 Msa0478410:CDS
TATCAAAAGAGCACGAGCCG+AGG 0.628477 3_3:-83125707 None:intergenic
CAGGATTTAAGAGTTCAACT+GGG 0.628767 3_3:+83125274 Msa0478410:CDS
GGCTCCTAAGCTCAACAGCG+TGG 0.629591 3_3:-83125362 None:intergenic
AGCGTCATGCTGTTATCCGA+CGG 0.629723 3_3:+83125052 Msa0478410:CDS
ACAGCATGACGCTAGCAACC+GGG 0.631559 3_3:-83125042 None:intergenic
GCTCCTAAGCTCAACAGCGT+GGG 0.636528 3_3:-83125361 None:intergenic
GACACCTTACCGTCATCACA+TGG 0.636879 3_3:-83125474 None:intergenic
ACAATTGAAAGCCTATCAGA+AGG 0.637171 3_3:-83124851 None:intergenic
CCTTACCGTCATCACATGGT+GGG 0.641950 3_3:-83125470 None:intergenic
TGATGATGCAAAGAAGAAGA+GGG 0.644376 3_3:+83125845 Msa0478410:CDS
ATTCAAACCAGCGACGGAGT+CGG 0.647168 3_3:+83124575 Msa0478410:CDS
AGTGCTATATACTCTTGCAG+TGG 0.648460 3_3:+83125334 Msa0478410:CDS
CCGTACCCTAAAGCTGACGC+TGG 0.648963 3_3:-83125445 None:intergenic
AAAGGTGACGCAGAAGACAA+AGG 0.649534 3_3:-83123467 None:intergenic
CGAAGCAGATGAAAATGCAG+AGG 0.652962 3_3:+83124466 Msa0478410:CDS
CTTACCGTTGAGAAGAATGA+CGG 0.653691 3_3:+83124901 Msa0478410:CDS
GCACCACCGCCACTCCGCGG+CGG 0.660211 3_3:+83124695 Msa0478410:CDS
ATATACGATCAACAGGGACA+AGG 0.662088 3_3:+83125581 Msa0478410:CDS
AGCGGTTATAGTCATGAACC+GGG 0.663417 3_3:+83125202 Msa0478410:CDS
GTTTGAACAGCGTGAAAACG+GGG 0.664529 3_3:+83124096 Msa0478410:CDS
TGAGCCGTCATTCTTCTCAA+CGG 0.667424 3_3:-83124905 None:intergenic
CAAGGGTGCTGGTTCCGCCG+CGG 0.673335 3_3:-83124709 None:intergenic
ATACTATCTCTTGACTTGCG+GGG 0.673555 3_3:-83125507 None:intergenic
ACCTTACCGTCATCACATGG+TGG 0.676357 3_3:-83125471 None:intergenic
GATGACATTCAAACCAGCGA+CGG 0.690438 3_3:+83124569 Msa0478410:CDS
TGTTGAGCTTAGGAGCCGTA+CGG 0.693392 3_3:+83125368 Msa0478410:CDS
AAAGCACCACCGCCACTCCG+CGG 0.698878 3_3:+83124692 Msa0478410:CDS
TGTTATCAGAACCAAGAACG+TGG 0.700341 3_3:+83124337 Msa0478410:CDS
GGGAGAATAGATCTCTCTCG+AGG 0.702517 3_3:+83123262 Msa0478410:five_prime_UTR
CTCAGAATATACGATCAACA+GGG 0.703507 3_3:+83125575 Msa0478410:CDS
GAGCCATAGCTGAGTCAAGG+AGG 0.706855 3_3:+83125638 Msa0478410:CDS
GTTGCAGACAGGGCAAACAA+GGG 0.707906 3_3:-83124201 None:intergenic
AAGAGGAACGTCTTTCCATG+TGG 0.708069 3_3:-83124225 None:intergenic
GTACATGTGCTGCTATGCAA+GGG 0.711015 3_3:-83124166 None:intergenic
CGAACCGGGTTGAAGAAGCG+TGG 0.713159 3_3:-83125135 None:intergenic
GAAAGACGTTCCTCTTCTAG+CGG 0.718880 3_3:+83124232 Msa0478410:CDS
GGATCGTAGAGAAAGAAACC+CGG 0.722882 3_3:+83125024 Msa0478410:CDS
GTATATAGCACTGATCTCGG+CGG 0.740345 3_3:-83125323 None:intergenic
GAATGAAAATGGGTACTGGG+TGG 0.746218 3_3:+83123600 Msa0478410:exon
CAAGGTGGTAGCAGACGGCG+CGG 0.753167 3_3:+83126144 Msa0478410:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAATAGAATAGAA+TGG - chr3_3:83123362-83123381 None:intergenic 10.0%
!!! TTATTTTTATTATCTTGATA+TGG + chr3_3:83123386-83123405 Msa0478410:five_prime_UTR 10.0%
!!! CATGTTTTTTTTTTTTTTAT+TGG + chr3_3:83126018-83126037 Msa0478410:three_prime_UTR 10.0%
!! ACATTATATTAAAAACTAAA+AGG - chr3_3:83126277-83126296 None:intergenic 10.0%
!! AATAACATACATAGTAAAAA+AGG - chr3_3:83124020-83124039 None:intergenic 15.0%
!! ATAATATCAGTATCATTATT+TGG - chr3_3:83124048-83124067 None:intergenic 15.0%
!! AAAGAACTTATTATAATTAG+AGG + chr3_3:83126092-83126111 Msa0478410:three_prime_UTR 15.0%
!! AGAATCAAAATCAAAATCAA+CGG + chr3_3:83125101-83125120 Msa0478410:CDS 20.0%
!! AGACAAAGGAATTTAGTTTA+GGG - chr3_3:83123456-83123475 None:intergenic 25.0%
!! AAGACAAAGGAATTTAGTTT+AGG - chr3_3:83123457-83123476 None:intergenic 25.0%
!!! TGTTTGTTTTGAAGAAAGAA+TGG - chr3_3:83123498-83123517 None:intergenic 25.0%
! GTTGTTCTTATTATCTGATA+TGG - chr3_3:83123660-83123679 None:intergenic 25.0%
! AATAAGAACAACAACAACAA+TGG + chr3_3:83123668-83123687 Msa0478410:CDS 25.0%
! AAATTGGTTGAGATTTAGAT+TGG - chr3_3:83123778-83123797 None:intergenic 25.0%
! TTTGATATTGAGTTAACTCT+AGG - chr3_3:83123911-83123930 None:intergenic 25.0%
! AATTAGAGGAAGAAAACAAT+TGG + chr3_3:83126106-83126125 Msa0478410:three_prime_UTR 25.0%
! ATTAGAGGAAGAAAACAATT+GGG + chr3_3:83126107-83126126 Msa0478410:three_prime_UTR 25.0%
! AAGATAGTATGATTATGTGA+TGG + chr3_3:83126182-83126201 Msa0478410:three_prime_UTR 25.0%
! AATCAAATTCTCCCATTTAA+AGG - chr3_3:83126221-83126240 None:intergenic 25.0%
! TTTAAATGGGAGAATTTGAT+TGG + chr3_3:83126220-83126239 Msa0478410:three_prime_UTR 25.0%
GAAGAAAGAATGGATCTAAA+AGG - chr3_3:83123488-83123507 None:intergenic 30.0%
! TTCTCAAAGTCTGAAACAAA+AGG + chr3_3:83123550-83123569 Msa0478410:five_prime_UTR 30.0%
! TCTCAAAGTCTGAAACAAAA+GGG + chr3_3:83123551-83123570 Msa0478410:five_prime_UTR 30.0%
! TACCTTTTCGTGAATGAAAA+TGG + chr3_3:83123589-83123608 Msa0478410:exon 30.0%
! ACCTTTTCGTGAATGAAAAT+GGG + chr3_3:83123590-83123609 Msa0478410:exon 30.0%
TATCTGATATGGTAGATTCA+GGG - chr3_3:83123649-83123668 None:intergenic 30.0%
TTATCTGATATGGTAGATTC+AGG - chr3_3:83123650-83123669 None:intergenic 30.0%
!!! TTTTGCTACTTTGAAATCTG+GGG - chr3_3:83123862-83123881 None:intergenic 30.0%
!!! CTTTTGCTACTTTGAAATCT+GGG - chr3_3:83123863-83123882 None:intergenic 30.0%
!!! ACTTTTGCTACTTTGAAATC+TGG - chr3_3:83123864-83123883 None:intergenic 30.0%
!!! TTTGAAGCTGTTTTTGAAGA+GGG - chr3_3:83123966-83123985 None:intergenic 30.0%
!!! ATTTGAAGCTGTTTTTGAAG+AGG - chr3_3:83123967-83123986 None:intergenic 30.0%
TCAAAAACAGCTTCAAATTC+TGG + chr3_3:83123969-83123988 Msa0478410:CDS 30.0%
CAAAAACAGCTTCAAATTCT+GGG + chr3_3:83123970-83123989 Msa0478410:CDS 30.0%
! TTTCTGTAGTAGGTATTTTG+TGG - chr3_3:83124307-83124326 None:intergenic 30.0%
!! CTTTTTCGTCTATTTCCAAA+CGG + chr3_3:83124876-83124895 Msa0478410:CDS 30.0%
!! CGTATATTCTGAGATTGATT+CGG - chr3_3:83125568-83125587 None:intergenic 30.0%
!! GAAAATATGGTGGATGAAAA+TGG + chr3_3:83125871-83125890 Msa0478410:CDS 30.0%
AATAAAGTCAGTGACTTACA+TGG + chr3_3:83125970-83125989 Msa0478410:CDS 30.0%
TTAGAGGAAGAAAACAATTG+GGG + chr3_3:83126108-83126127 Msa0478410:three_prime_UTR 30.0%
ACTATCTTCTAATGCACAAA+GGG - chr3_3:83126170-83126189 None:intergenic 30.0%
TACTATCTTCTAATGCACAA+AGG - chr3_3:83126171-83126190 None:intergenic 30.0%
AAATTCTCCCATTTAAAGGT+GGG - chr3_3:83126217-83126236 None:intergenic 30.0%
GAGAAGACAAAAAGATATGA+CGG - chr3_3:83126255-83126274 None:intergenic 30.0%
AAGTTCAACGAACTAGACTT+TGG - chr3_3:83123334-83123353 None:intergenic 35.0%
! GAATTTAGTTTAGGGAGCAT+GGG - chr3_3:83123448-83123467 None:intergenic 35.0%
! ACCCATTTTCATTCACGAAA+AGG - chr3_3:83123594-83123613 None:intergenic 35.0%
! GCTAGATTGAGTTTTCTTTC+TGG + chr3_3:83123719-83123738 Msa0478410:CDS 35.0%
! AGATTGAGTTTTCTTTCTGG+TGG + chr3_3:83123722-83123741 Msa0478410:CDS 35.0%
TAGGAGACTTTGTTGATCTT+GGG - chr3_3:83123892-83123911 None:intergenic 35.0%
! TTGTGGTTTGGAATTGCATT+GGG - chr3_3:83124290-83124309 None:intergenic 35.0%
! TTTGTGGTTTGGAATTGCAT+TGG - chr3_3:83124291-83124310 None:intergenic 35.0%
! GTAGTAGGTATTTTGTGGTT+TGG - chr3_3:83124302-83124321 None:intergenic 35.0%
AGAACAGTGACAAGATCTAT+CGG - chr3_3:83124752-83124771 None:intergenic 35.0%
! CGTTTGGTTATTTCATCTCT+TGG + chr3_3:83124827-83124846 Msa0478410:CDS 35.0%
ACAATTGAAAGCCTATCAGA+AGG - chr3_3:83124854-83124873 None:intergenic 35.0%
! GAGAAAAGCAACTACAGTTT+TGG + chr3_3:83125000-83125019 Msa0478410:CDS 35.0%
!! AAAAGCAACTACAGTTTTGG+AGG + chr3_3:83125003-83125022 Msa0478410:CDS 35.0%
AATTTCAATATGAGCGAACC+GGG - chr3_3:83125152-83125171 None:intergenic 35.0%
GAATTTCAATATGAGCGAAC+CGG - chr3_3:83125153-83125172 None:intergenic 35.0%
GTTCGCTCATATTGAAATTC+CGG + chr3_3:83125153-83125172 Msa0478410:CDS 35.0%
GATGCATTTGCAAAATGTGT+TGG + chr3_3:83125229-83125248 Msa0478410:CDS 35.0%
!! TCTTTTAAGTGTTGTGGTTC+AGG + chr3_3:83125255-83125274 Msa0478410:CDS 35.0%
TCAGGATTTAAGAGTTCAAC+TGG + chr3_3:83125273-83125292 Msa0478410:CDS 35.0%
CAGGATTTAAGAGTTCAACT+GGG + chr3_3:83125274-83125293 Msa0478410:CDS 35.0%
!! AGAGTATATAGCACTGATCT+CGG - chr3_3:83125329-83125348 None:intergenic 35.0%
! TGAAGAAGAAAGAGAGCTTT+TGG + chr3_3:83125408-83125427 Msa0478410:CDS 35.0%
!! TATACTATCTCTTGACTTGC+GGG - chr3_3:83125511-83125530 None:intergenic 35.0%
! GTATACTATCTCTTGACTTG+CGG - chr3_3:83125512-83125531 None:intergenic 35.0%
GCAAGTCAAGAGATAGTATA+CGG + chr3_3:83125511-83125530 Msa0478410:CDS 35.0%
!! ATATTCTGAGATTGATTCGG+AGG - chr3_3:83125565-83125584 None:intergenic 35.0%
TCTCAGAATATACGATCAAC+AGG + chr3_3:83125574-83125593 Msa0478410:CDS 35.0%
CTCAGAATATACGATCAACA+GGG + chr3_3:83125575-83125594 Msa0478410:CDS 35.0%
! ATGATGATGCAAAGAAGAAG+AGG + chr3_3:83125844-83125863 Msa0478410:CDS 35.0%
! TGATGATGCAAAGAAGAAGA+GGG + chr3_3:83125845-83125864 Msa0478410:CDS 35.0%
TACATGGTTTCGAAAATGCT+AGG + chr3_3:83125986-83126005 Msa0478410:CDS 35.0%
! TGATTATGTGATGGAGTGTA+TGG + chr3_3:83126191-83126210 Msa0478410:three_prime_UTR 35.0%
CAAATTCTCCCATTTAAAGG+TGG - chr3_3:83126218-83126237 None:intergenic 35.0%
AATGGGAGAATTTGATTGGT+TGG + chr3_3:83126224-83126243 Msa0478410:three_prime_UTR 35.0%
! GGAATTTAGTTTAGGGAGCA+TGG - chr3_3:83123449-83123468 None:intergenic 40.0%
TCGTGAATGAAAATGGGTAC+TGG + chr3_3:83123596-83123615 Msa0478410:exon 40.0%
CGTGAATGAAAATGGGTACT+GGG + chr3_3:83123597-83123616 Msa0478410:exon 40.0%
GATTTAGATTGGTGCAAACG+TGG - chr3_3:83123767-83123786 None:intergenic 40.0%
! CGAAGACTTGGACTAGAAAT+TGG - chr3_3:83123794-83123813 None:intergenic 40.0%
ATTGTTCGACAACGAAGACT+TGG - chr3_3:83123806-83123825 None:intergenic 40.0%
AGGAGACTTTGTTGATCTTG+GGG - chr3_3:83123891-83123910 None:intergenic 40.0%
CTAGGAGACTTTGTTGATCT+TGG - chr3_3:83123893-83123912 None:intergenic 40.0%
TTGAAGAGGGACAACTTCAA+AGG - chr3_3:83123953-83123972 None:intergenic 40.0%
TGTTTGATTCAGAGTAGCTG+TGG + chr3_3:83124068-83124087 Msa0478410:intron 40.0%
CTGTTTGAACAGCGTGAAAA+CGG + chr3_3:83124094-83124113 Msa0478410:CDS 40.0%
TGTTTGAACAGCGTGAAAAC+GGG + chr3_3:83124095-83124114 Msa0478410:CDS 40.0%
!! TTGGTTCTGATAACAGGAGA+GGG - chr3_3:83124332-83124351 None:intergenic 40.0%
!! ACGTTCTTGGTTCTGATAAC+AGG - chr3_3:83124338-83124357 None:intergenic 40.0%
TGTTATCAGAACCAAGAACG+TGG + chr3_3:83124337-83124356 Msa0478410:CDS 40.0%
! TCTGCATTTTCATCTGCTTC+GGG - chr3_3:83124467-83124486 None:intergenic 40.0%
! CTCTGCATTTTCATCTGCTT+CGG - chr3_3:83124468-83124487 None:intergenic 40.0%
!! ATCGGAGTACGTTTTGTTAG+CGG - chr3_3:83124552-83124571 None:intergenic 40.0%
!! TGTTCTGGAAACTGATACGA+TGG - chr3_3:83124642-83124661 None:intergenic 40.0%
AACACACGAAACATACGCTT+TGG + chr3_3:83124658-83124677 Msa0478410:CDS 40.0%
CTTACCGTTGAGAAGAATGA+CGG + chr3_3:83124901-83124920 Msa0478410:CDS 40.0%
! AACCTTTTCATCTTGACCGT+CGG - chr3_3:83125071-83125090 None:intergenic 40.0%
AAATTCCGGTTCATGCGTTT+GGG + chr3_3:83125167-83125186 Msa0478410:CDS 40.0%
! TTTGGGTTTGGTAGCAAAAG+CGG + chr3_3:83125184-83125203 Msa0478410:CDS 40.0%
AAGCGGTTATAGTCATGAAC+CGG + chr3_3:83125201-83125220 Msa0478410:CDS 40.0%
GCATTTGCAAAATGTGTTGG+CGG + chr3_3:83125232-83125251 Msa0478410:CDS 40.0%
AGTGCTATATACTCTTGCAG+TGG + chr3_3:83125334-83125353 Msa0478410:CDS 40.0%
! AGAAGAAAGAGAGCTTTTGG+TGG + chr3_3:83125411-83125430 Msa0478410:CDS 40.0%
!! ATACTATCTCTTGACTTGCG+GGG - chr3_3:83125510-83125529 None:intergenic 40.0%
ATAGTATACGGCAGAGAACA+GGG + chr3_3:83125523-83125542 Msa0478410:CDS 40.0%
ATATACGATCAACAGGGACA+AGG + chr3_3:83125581-83125600 Msa0478410:CDS 40.0%
TGCTCATCATTTACTTGCCT+CGG + chr3_3:83125690-83125709 Msa0478410:CDS 40.0%
! CGTGCTCTTTTGATACAATC+TGG + chr3_3:83125715-83125734 Msa0478410:CDS 40.0%
! AAGAAGAGGGTGCGAAAATA+TGG + chr3_3:83125858-83125877 Msa0478410:CDS 40.0%
AGGAAGAAAACAATTGGGGA+TGG + chr3_3:83126112-83126131 Msa0478410:three_prime_UTR 40.0%
GGAAGAAAACAATTGGGGAT+GGG + chr3_3:83126113-83126132 Msa0478410:three_prime_UTR 40.0%
AAAACAATTGGGGATGGGAA+TGG + chr3_3:83126118-83126137 Msa0478410:three_prime_UTR 40.0%
TGTATGGCCCACCTTTAAAT+GGG + chr3_3:83126207-83126226 Msa0478410:three_prime_UTR 40.0%
AAAGGTGACGCAGAAGACAA+AGG - chr3_3:83123470-83123489 None:intergenic 45.0%
!! GAATGAAAATGGGTACTGGG+TGG + chr3_3:83123600-83123619 Msa0478410:exon 45.0%
TTCAGGGTCTCGTGTACAAA+AGG - chr3_3:83123633-83123652 None:intergenic 45.0%
! CAGCTTCTTGGACTAGGATT+TGG - chr3_3:83123698-83123717 None:intergenic 45.0%
CTCAATCTAGCACAGCTTCT+TGG - chr3_3:83123710-83123729 None:intergenic 45.0%
GTTTGAACAGCGTGAAAACG+GGG + chr3_3:83124096-83124115 Msa0478410:CDS 45.0%
! GTACATGTGCTGCTATGCAA+GGG - chr3_3:83124169-83124188 None:intergenic 45.0%
AAGAGGAACGTCTTTCCATG+TGG - chr3_3:83124228-83124247 None:intergenic 45.0%
GAAAGACGTTCCTCTTCTAG+CGG + chr3_3:83124232-83124251 Msa0478410:CDS 45.0%
! GGAGAGGGATTTTCTGTAGT+AGG - chr3_3:83124317-83124336 None:intergenic 45.0%
!! CTTGGTTCTGATAACAGGAG+AGG - chr3_3:83124333-83124352 None:intergenic 45.0%
TTGAGACTGATCCACGTTCT+TGG - chr3_3:83124351-83124370 None:intergenic 45.0%
GAAGTTGGAGAAAGGAGTAG+AGG - chr3_3:83124419-83124438 None:intergenic 45.0%
CTACTCCTTTCTCCAACTTC+TGG + chr3_3:83124419-83124438 Msa0478410:CDS 45.0%
! CTGCATTTTCATCTGCTTCG+GGG - chr3_3:83124466-83124485 None:intergenic 45.0%
CGAAGCAGATGAAAATGCAG+AGG + chr3_3:83124466-83124485 Msa0478410:CDS 45.0%
GATGACAACTGCGAGTTTCA+AGG + chr3_3:83124497-83124516 Msa0478410:CDS 45.0%
!! GTTTTGTTAGCGGTGGAAGT+AGG - chr3_3:83124542-83124561 None:intergenic 45.0%
!! GTCGCTGGTTTGAATGTCAT+CGG - chr3_3:83124570-83124589 None:intergenic 45.0%
GATGACATTCAAACCAGCGA+CGG + chr3_3:83124569-83124588 Msa0478410:CDS 45.0%
CGGTGATTCAAGAACTGTTC+AGG + chr3_3:83124595-83124614 Msa0478410:CDS 45.0%
ACTGATACGATGGCACATTC+TGG - chr3_3:83124632-83124651 None:intergenic 45.0%
AGCGTATGTTTCGTGTGTTC+TGG - chr3_3:83124657-83124676 None:intergenic 45.0%
CTTGTCACTGTTCTCGATGT+TGG + chr3_3:83124758-83124777 Msa0478410:CDS 45.0%
CATCTCTTGGTCCTTCTGAT+AGG + chr3_3:83124840-83124859 Msa0478410:CDS 45.0%
TGAGCCGTCATTCTTCTCAA+CGG - chr3_3:83124908-83124927 None:intergenic 45.0%
TTGAGAAGAATGACGGCTCA+GGG + chr3_3:83124908-83124927 Msa0478410:CDS 45.0%
ACTGACACTGTTACCTTCAC+CGG - chr3_3:83124972-83124991 None:intergenic 45.0%
GGATCGTAGAGAAAGAAACC+CGG + chr3_3:83125024-83125043 Msa0478410:CDS 45.0%
ATCCGACGGTCAAGATGAAA+AGG + chr3_3:83125066-83125085 Msa0478410:CDS 45.0%
GAAATTCCGGTTCATGCGTT+TGG + chr3_3:83125166-83125185 Msa0478410:CDS 45.0%
AGCGGTTATAGTCATGAACC+GGG + chr3_3:83125202-83125221 Msa0478410:CDS 45.0%
TTATAGTCATGAACCGGGTG+AGG + chr3_3:83125207-83125226 Msa0478410:CDS 45.0%
TTTGCAAATGCATCCTCACC+CGG - chr3_3:83125223-83125242 None:intergenic 45.0%
!! TGGCGGTCTTTTAAGTGTTG+TGG + chr3_3:83125249-83125268 Msa0478410:CDS 45.0%
GGGCTTTCAATCTGATGATC+CGG + chr3_3:83125294-83125313 Msa0478410:CDS 45.0%
!! GTATATAGCACTGATCTCGG+CGG - chr3_3:83125326-83125345 None:intergenic 45.0%
GATAGTATACGGCAGAGAAC+AGG + chr3_3:83125522-83125541 Msa0478410:CDS 45.0%
TCAGCTGAGCAATATGTTCG+TGG + chr3_3:83125745-83125764 Msa0478410:CDS 45.0%
TGAGCAATATGTTCGTGGCT+TGG + chr3_3:83125750-83125769 Msa0478410:CDS 45.0%
!! GCAAGAACAGGTTCAAGTTG+AGG + chr3_3:83125807-83125826 Msa0478410:CDS 45.0%
! AAGAGGGTGCGAAAATATGG+TGG + chr3_3:83125861-83125880 Msa0478410:CDS 45.0%
CAAGCTGAAGTAGGTGTAAG+TGG - chr3_3:83125901-83125920 None:intergenic 45.0%
CACTTACACCTACTTCAGCT+TGG + chr3_3:83125899-83125918 Msa0478410:CDS 45.0%
GTGTATGGCCCACCTTTAAA+TGG + chr3_3:83126206-83126225 Msa0478410:three_prime_UTR 45.0%
!!! ATGTTTTTTTTTTTTTTATT+GGG + chr3_3:83126019-83126038 Msa0478410:three_prime_UTR 5.0%
GGGAGAATAGATCTCTCTCG+AGG + chr3_3:83123262-83123281 Msa0478410:five_prime_UTR 50.0%
! TCTCGAGGCGTTTAACTGCA+GGG + chr3_3:83123277-83123296 Msa0478410:five_prime_UTR 50.0%
CTAGCACAGCTTCTTGGACT+AGG - chr3_3:83123704-83123723 None:intergenic 50.0%
TGGTGCAAACGTGGAGTTGA+AGG - chr3_3:83123758-83123777 None:intergenic 50.0%
AAAGGAGAGCGAGGAGAAGT+TGG - chr3_3:83123935-83123954 None:intergenic 50.0%
GACAACTTCAAAGGAGAGCG+AGG - chr3_3:83123944-83123963 None:intergenic 50.0%
! CGTACATGTGCTGCTATGCA+AGG - chr3_3:83124170-83124189 None:intergenic 50.0%
GTTGCAGACAGGGCAAACAA+GGG - chr3_3:83124204-83124223 None:intergenic 50.0%
TAGAGGCTCGTCATCATCGT+AGG - chr3_3:83124402-83124421 None:intergenic 50.0%
CTCCTTTCTCCAACTTCTGG+TGG + chr3_3:83124422-83124441 Msa0478410:CDS 50.0%
CACCACCAGAAGTTGGAGAA+AGG - chr3_3:83124427-83124446 None:intergenic 50.0%
CTTTCTCCAACTTCTGGTGG+TGG + chr3_3:83124425-83124444 Msa0478410:CDS 50.0%
ATCCTTCCACCACCAGAAGT+TGG - chr3_3:83124434-83124453 None:intergenic 50.0%
!! GGAGTACGTTTTGTTAGCGG+TGG - chr3_3:83124549-83124568 None:intergenic 50.0%
ATTCAAACCAGCGACGGAGT+CGG + chr3_3:83124575-83124594 Msa0478410:CDS 50.0%
GTCACTGTTCTCGATGTTGG+TGG + chr3_3:83124761-83124780 Msa0478410:CDS 50.0%
TCTCAACGGTAAGAGCCGTT+TGG - chr3_3:83124894-83124913 None:intergenic 50.0%
GTTGAGAAGAATGACGGCTC+AGG + chr3_3:83124907-83124926 Msa0478410:CDS 50.0%
!! ATCGTTGACCGGCTTGTTAC+CGG + chr3_3:83124950-83124969 Msa0478410:CDS 50.0%
TACCTTCACCGGTAACAAGC+CGG - chr3_3:83124961-83124980 None:intergenic 50.0%
AACAGCATGACGCTAGCAAC+CGG - chr3_3:83125046-83125065 None:intergenic 50.0%
AGCGTCATGCTGTTATCCGA+CGG + chr3_3:83125052-83125071 Msa0478410:CDS 50.0%
ACAACCACGCTTCTTCAACC+CGG + chr3_3:83125131-83125150 Msa0478410:CDS 50.0%
CCAAACCCAAACGCATGAAC+CGG - chr3_3:83125175-83125194 None:intergenic 50.0%
TTCAATCTGATGATCCGGCC+CGG + chr3_3:83125299-83125318 Msa0478410:CDS 50.0%
TGTTGAGCTTAGGAGCCGTA+CGG + chr3_3:83125368-83125387 Msa0478410:CDS 50.0%
GTATAAATCGCCGAGCCGTA+CGG - chr3_3:83125386-83125405 None:intergenic 50.0%
AGAGTTCCAGCGTCAGCTTT+AGG + chr3_3:83125439-83125458 Msa0478410:CDS 50.0%
GAGTTCCAGCGTCAGCTTTA+GGG + chr3_3:83125440-83125459 Msa0478410:CDS 50.0%
CCTTACCGTCATCACATGGT+GGG - chr3_3:83125473-83125492 None:intergenic 50.0%
ACCTTACCGTCATCACATGG+TGG - chr3_3:83125474-83125493 None:intergenic 50.0%
GACACCTTACCGTCATCACA+TGG - chr3_3:83125477-83125496 None:intergenic 50.0%
CAACAGGGACAAGGATCGAA+AGG + chr3_3:83125590-83125609 Msa0478410:CDS 50.0%
GGACAAGGATCGAAAGGTTG+AGG + chr3_3:83125596-83125615 Msa0478410:CDS 50.0%
AAGCCTCCTTGACTCAGCTA+TGG - chr3_3:83125644-83125663 None:intergenic 50.0%
! TATCAAAAGAGCACGAGCCG+AGG - chr3_3:83125710-83125729 None:intergenic 50.0%
TTGGAGGAGACAGCAAGAAC+AGG + chr3_3:83125795-83125814 Msa0478410:CDS 50.0%
ACCTACTTCAGCTTGGAGAG+CGG + chr3_3:83125906-83125925 Msa0478410:CDS 50.0%
GAAGCTGGCTAAGATGGCTA+TGG + chr3_3:83125933-83125952 Msa0478410:CDS 50.0%
TCGCTCTCTCTCTCTCTACC+TGG - chr3_3:83123241-83123260 None:intergenic 55.0%
AGGTAGAGAGAGAGAGAGCG+AGG + chr3_3:83123240-83123259 Msa0478410:five_prime_UTR 55.0%
GGTAGAGAGAGAGAGAGCGA+GGG + chr3_3:83123241-83123260 Msa0478410:five_prime_UTR 55.0%
GTAGAGAGAGAGAGAGCGAG+GGG + chr3_3:83123242-83123261 Msa0478410:five_prime_UTR 55.0%
! CTCTCGAGGCGTTTAACTGC+AGG + chr3_3:83123276-83123295 Msa0478410:five_prime_UTR 55.0%
AACAGCGTGAAAACGGGGCA+GGG + chr3_3:83124101-83124120 Msa0478410:CDS 55.0%
CAGGGCAAACAAGGGTAGCA+TGG - chr3_3:83124196-83124215 None:intergenic 55.0%
CGTTGCAGACAGGGCAAACA+AGG - chr3_3:83124205-83124224 None:intergenic 55.0%
TCCATGTGGCGTTGCAGACA+GGG - chr3_3:83124214-83124233 None:intergenic 55.0%
TTCCATGTGGCGTTGCAGAC+AGG - chr3_3:83124215-83124234 None:intergenic 55.0%
TTCTTGTGCGCCGCTAGAAG+AGG - chr3_3:83124245-83124264 None:intergenic 55.0%
!! CTCCAACTTCTGGTGGTGGA+AGG + chr3_3:83124429-83124448 Msa0478410:CDS 55.0%
CCAGCACCCTTGATCCTTCA+CGG + chr3_3:83124720-83124739 Msa0478410:CDS 55.0%
AGCTCGCCGTGAAGGATCAA+GGG - chr3_3:83124729-83124748 None:intergenic 55.0%
TAGCATGCGAAGCTTTGCGC+TGG - chr3_3:83124795-83124814 None:intergenic 55.0%
GCTAAAACGCGCGATGCGTT+TGG + chr3_3:83124811-83124830 Msa0478410:CDS 55.0%
CTCAGGGTCAACGTTTGGCT+CGG + chr3_3:83124924-83124943 Msa0478410:CDS 55.0%
ACAGCATGACGCTAGCAACC+GGG - chr3_3:83125045-83125064 None:intergenic 55.0%
! CCGGTTCATGCGTTTGGGTT+TGG + chr3_3:83125172-83125191 Msa0478410:CDS 55.0%
TCAATCTGATGATCCGGCCC+GGG + chr3_3:83125300-83125319 Msa0478410:CDS 55.0%
AGACCCACGCTGTTGAGCTT+AGG + chr3_3:83125358-83125377 Msa0478410:CDS 55.0%
GCTCCTAAGCTCAACAGCGT+GGG - chr3_3:83125364-83125383 None:intergenic 55.0%
!! CCAGCGTCAGCTTTAGGGTA+CGG + chr3_3:83125445-83125464 Msa0478410:CDS 55.0%
!! CAGCGTCAGCTTTAGGGTAC+GGG + chr3_3:83125446-83125465 Msa0478410:CDS 55.0%
!! CCCACCATGTGATGACGGTA+AGG + chr3_3:83125470-83125489 Msa0478410:CDS 55.0%
CACGAGCCATAGCTGAGTCA+AGG + chr3_3:83125635-83125654 Msa0478410:CDS 55.0%
GAGCCATAGCTGAGTCAAGG+AGG + chr3_3:83125638-83125657 Msa0478410:CDS 55.0%
GGCTGAGAAGCTGGCTAAGA+TGG + chr3_3:83125927-83125946 Msa0478410:CDS 55.0%
TGGGGATGGGAATGGAGACA+AGG + chr3_3:83126126-83126145 Msa0478410:three_prime_UTR 55.0%
GGATGGGAATGGAGACAAGG+TGG + chr3_3:83126129-83126148 Msa0478410:three_prime_UTR 55.0%
GGAGACAAGGTGGTAGCAGA+CGG + chr3_3:83126139-83126158 Msa0478410:three_prime_UTR 55.0%
GAACAGCGTGAAAACGGGGC+AGG + chr3_3:83124100-83124119 Msa0478410:CDS 60.0%
ACAGCGTGAAAACGGGGCAG+GGG + chr3_3:83124102-83124121 Msa0478410:CDS 60.0%
!! TGAATCACCGACTCCGTCGC+TGG - chr3_3:83124585-83124604 None:intergenic 60.0%
! CCGTGAAGGATCAAGGGTGC+TGG - chr3_3:83124723-83124742 None:intergenic 60.0%
GAGCTCGCCGTGAAGGATCA+AGG - chr3_3:83124730-83124749 None:intergenic 60.0%
TCTATCGGAGCTCGCCGTGA+AGG - chr3_3:83124737-83124756 None:intergenic 60.0%
GACGGCTCAGGGTCAACGTT+TGG + chr3_3:83124919-83124938 Msa0478410:CDS 60.0%
! TGGCTCGGCGTATCGTTGAC+CGG + chr3_3:83124939-83124958 Msa0478410:CDS 60.0%
!! GACCGGCTTGTTACCGGTGA+AGG + chr3_3:83124956-83124975 Msa0478410:CDS 60.0%
! CGAACCGGGTTGAAGAAGCG+TGG - chr3_3:83125138-83125157 None:intergenic 60.0%
GGCTCCTAAGCTCAACAGCG+TGG - chr3_3:83125365-83125384 None:intergenic 60.0%
AGCTTAGGAGCCGTACGGCT+CGG + chr3_3:83125373-83125392 Msa0478410:CDS 60.0%
CCGTACCCTAAAGCTGACGC+TGG - chr3_3:83125448-83125467 None:intergenic 60.0%
CGGGTCCCACCATGTGATGA+CGG + chr3_3:83125465-83125484 Msa0478410:CDS 60.0%
! TCGTGGCTTGGAAGCTGAGC+TGG + chr3_3:83125762-83125781 Msa0478410:CDS 60.0%
! TGGCTTGGAAGCTGAGCTGG+CGG + chr3_3:83125765-83125784 Msa0478410:CDS 60.0%
CTGAGCTGGCGGAGCTTCAT+TGG + chr3_3:83125776-83125795 Msa0478410:CDS 60.0%
AGCTGGCGGAGCTTCATTGG+AGG + chr3_3:83125779-83125798 Msa0478410:CDS 60.0%
GCCGCTCTCCAAGCTGAAGT+AGG - chr3_3:83125910-83125929 None:intergenic 60.0%
TTGGAGAGCGGCTGAGAAGC+TGG + chr3_3:83125918-83125937 Msa0478410:CDS 60.0%
CGTGAAAACGGGGCAGGGGA+AGG + chr3_3:83124106-83124125 Msa0478410:CDS 65.0%
GCCCTGTCTGCAACGCCACA+TGG + chr3_3:83124210-83124229 Msa0478410:CDS 65.0%
! AAAGCACCACCGCCACTCCG+CGG + chr3_3:83124692-83124711 Msa0478410:CDS 65.0%
!! TAGCACTGATCTCGGCGGCC+CGG - chr3_3:83125321-83125340 None:intergenic 65.0%
CAAGGTGGTAGCAGACGGCG+CGG + chr3_3:83126144-83126163 Msa0478410:three_prime_UTR 65.0%
!! CAAGGGTGCTGGTTCCGCCG+CGG - chr3_3:83124712-83124731 None:intergenic 70.0%
!! AGCACTGATCTCGGCGGCCC+GGG - chr3_3:83125320-83125339 None:intergenic 70.0%
CTGGTTCCGCCGCGGAGTGG+CGG - chr3_3:83124704-83124723 None:intergenic 75.0%
!! GTGCTGGTTCCGCCGCGGAG+TGG - chr3_3:83124707-83124726 None:intergenic 75.0%
! GCACCACCGCCACTCCGCGG+CGG + chr3_3:83124695-83124714 Msa0478410:CDS 80.0%
! GTTCCGCCGCGGAGTGGCGG+TGG - chr3_3:83124701-83124720 None:intergenic 80.0%
! CTGATCTCGGCGGCCCGGGC+CGG - chr3_3:83125316-83125335 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 83123232 83126337 83123232 ID=Msa0478410;Name=Msa0478410
chr3_3 mRNA 83123232 83126337 83123232 ID=Msa0478410-mRNA-1;Parent=Msa0478410;Name=Msa0478410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=370|1|1|1|1|1|2|323|774
chr3_3 exon 83123232 83123991 83123232 ID=Msa0478410-mRNA-1:exon:23262;Parent=Msa0478410-mRNA-1
chr3_3 exon 83124080 83126337 83124080 ID=Msa0478410-mRNA-1:exon:23263;Parent=Msa0478410-mRNA-1
chr3_3 five_prime_UTR 83123232 83123601 83123232 ID=Msa0478410-mRNA-1:five_prime_utr;Parent=Msa0478410-mRNA-1
chr3_3 CDS 83123602 83123991 83123602 ID=Msa0478410-mRNA-1:cds;Parent=Msa0478410-mRNA-1
chr3_3 CDS 83124080 83126014 83124080 ID=Msa0478410-mRNA-1:cds;Parent=Msa0478410-mRNA-1
chr3_3 three_prime_UTR 83126015 83126337 83126015 ID=Msa0478410-mRNA-1:three_prime_utr;Parent=Msa0478410-mRNA-1
Gene Sequence

>Msa0478410

ATGAAAATGGGTACTGGGTGGAGAAGAGCCTTTTGTACACGAGACCCTGAATCTACCATATCAGATAATAAGAACAACAACAACAATGGAAGTCCAAATCCTAGTCCAAGAAGCTGTGCTAGATTGAGTTTTCTTTCTGGTGGTAGTAGTAATCCTTCAACTCCACGTTTGCACCAATCTAAATCTCAACCAATTTCTAGTCCAAGTCTTCGTTGTCGAACAATAACTGAAGCAGCTTCTCAAATTACAAATGATAGCCCCAGATTTCAAAGTAGCAAAAGTAGCACCCCAAGATCAACAAAGTCTCCTAGAGTTAACTCAATATCAAATCCAACTTCTCCTCGCTCTCCTTTGAAGTTGTCCCTCTTCAAAAACAGCTTCAAATTCTGGAGTAGCTGTGGAATCTGTTTGAACAGCGTGAAAACGGGGCAGGGGAAGGCAATATACACAGCAGAATGTGCACATGCTTTTCATTTCCCTTGCATAGCAGCACATGTACGCAACCATGCTACCCTTGTTTGCCCTGTCTGCAACGCCACATGGAAAGACGTTCCTCTTCTAGCGGCGCACAAGAATCTCTCTTCTTCACAAGAAATTCCCAATGCAATTCCAAACCACAAAATACCTACTACAGAAAATCCCTCTCCTGTTATCAGAACCAAGAACGTGGATCAGTCTCAACAAACTAATCATTCTGAATCAATAAGATCCTACGATGATGACGAGCCTCTACTCCTTTCTCCAACTTCTGGTGGTGGAAGGATTAACACTATCCCCGAAGCAGATGAAAATGCAGAGGAAGAAGATGATGACAACTGCGAGTTTCAAGGATTTTTCGTCAACGCAAAACCTACTTCCACCGCTAACAAAACGTACTCCGATGACATTCAAACCAGCGACGGAGTCGGTGATTCAAGAACTGTTCAGGTGAAGTTAATGCCAGAATGTGCCATCGTATCAGTTTCCAGAACACACGAAACATACGCTTTGGTTTTAAAAGTAAAAGCACCACCGCCACTCCGCGGCGGAACCAGCACCCTTGATCCTTCACGGCGAGCTCCGATAGATCTTGTCACTGTTCTCGATGTTGGTGGAAGCATGTCCAGCGCAAAGCTTCGCATGCTAAAACGCGCGATGCGTTTGGTTATTTCATCTCTTGGTCCTTCTGATAGGCTTTCAATTGTTGCTTTTTCGTCTATTTCCAAACGGCTCTTACCGTTGAGAAGAATGACGGCTCAGGGTCAACGTTTGGCTCGGCGTATCGTTGACCGGCTTGTTACCGGTGAAGGTAACAGTGTCAGTGAAGCTTTGAGAAAAGCAACTACAGTTTTGGAGGATCGTAGAGAAAGAAACCCGGTTGCTAGCGTCATGCTGTTATCCGACGGTCAAGATGAAAAGGTTAATAACAGTAAGAATCAAAATCAAAATCAACGGAAGATGTACAACCACGCTTCTTCAACCCGGTTCGCTCATATTGAAATTCCGGTTCATGCGTTTGGGTTTGGTAGCAAAAGCGGTTATAGTCATGAACCGGGTGAGGATGCATTTGCAAAATGTGTTGGCGGTCTTTTAAGTGTTGTGGTTCAGGATTTAAGAGTTCAACTGGGCTTTCAATCTGATGATCCGGCCCGGGCCGCCGAGATCAGTGCTATATACTCTTGCAGTGGAAGACCCACGCTGTTGAGCTTAGGAGCCGTACGGCTCGGCGATTTATACGCTGAAGAAGAAAGAGAGCTTTTGGTGGAGATGAGAGTTCCAGCGTCAGCTTTAGGGTACGGGTCCCACCATGTGATGACGGTAAGGTGTCTTTATAAAGACCCCGCAAGTCAAGAGATAGTATACGGCAGAGAACAGGGACTTACAGTGCAATTACCTCCGAATCAATCTCAGAATATACGATCAACAGGGACAAGGATCGAAAGGTTGAGGAATCTTTTCATAACAACACGAGCCATAGCTGAGTCAAGGAGGCTTTTAGATCATAACAGTGACTTCACAAGTGCTCATCATTTACTTGCCTCGGCTCGTGCTCTTTTGATACAATCTGGCTCAACTTCAGCTGAGCAATATGTTCGTGGCTTGGAAGCTGAGCTGGCGGAGCTTCATTGGAGGAGACAGCAAGAACAGGTTCAAGTTGAGGCTCAGCAGCAACAAATGATGATGCAAAGAAGAAGAGGGTGCGAAAATATGGTGGATGAAAATGGTGAGCCACTTACACCTACTTCAGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGATGGCTATGGTCAAGAAGTCTTTGAATAAAGTCAGTGACTTACATGGTTTCGAAAATGCTAGGTTTTGA
Protein sequence

>Msa0478410

MKMGTGWRRAFCTRDPESTISDNKNNNNNGSPNPSPRSCARLSFLSGGSSNPSTPRLHQSKSQPISSPSLRCRTITEAASQITNDSPRFQSSKSSTPRSTKSPRVNSISNPTSPRSPLKLSLFKNSFKFWSSCGICLNSVKTGQGKAIYTAECAHAFHFPCIAAHVRNHATLVCPVCNATWKDVPLLAAHKNLSSSQEIPNAIPNHKIPTTENPSPVIRTKNVDQSQQTNHSESIRSYDDDEPLLLSPTSGGGRINTIPEADENAEEEDDDNCEFQGFFVNAKPTSTANKTYSDDIQTSDGVGDSRTVQVKLMPECAIVSVSRTHETYALVLKVKAPPPLRGGTSTLDPSRRAPIDLVTVLDVGGSMSSAKLRMLKRAMRLVISSLGPSDRLSIVAFSSISKRLLPLRRMTAQGQRLARRIVDRLVTGEGNSVSEALRKATTVLEDRRERNPVASVMLLSDGQDEKVNNSKNQNQNQRKMYNHASSTRFAHIEIPVHAFGFGSKSGYSHEPGEDAFAKCVGGLLSVVVQDLRVQLGFQSDDPARAAEISAIYSCSGRPTLLSLGAVRLGDLYAEEERELLVEMRVPASALGYGSHHVMTVRCLYKDPASQEIVYGREQGLTVQLPPNQSQNIRSTGTRIERLRNLFITTRAIAESRRLLDHNSDFTSAHHLLASARALLIQSGSTSAEQYVRGLEAELAELHWRRQQEQVQVEAQQQQMMMQRRRGCENMVDENGEPLTPTSAWRAAEKLAKMAMVKKSLNKVSDLHGFENARF*