AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436620 MtrunA17_Chr5g0429851 94.803 558 29 0 1 558 73 630 0.0 1021
Msa0436620 MtrunA17_Chr4g0065421 25.246 305 193 13 166 466 161 434 2.21e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436620 AT5G58760.1 70.980 510 139 4 5 510 6 510 0.0 746
Msa0436620 AT5G58760.2 74.515 412 105 0 99 510 1 412 0.0 670
Msa0436620 AT1G80710.1 25.000 344 206 14 166 493 209 516 1.01e-16 83.6

Find 150 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGTCTGCTTGGATTT+TGG 0.092885 3_2:-90242512 None:intergenic
CCAAACTGCTAACCATTTAT+AGG 0.178321 3_2:+90242614 Msa0436620:three_prime_UTR
TCTTCTGTATAGAGAAAATT+TGG 0.200589 3_2:+90242851 Msa0436620:three_prime_UTR
CGTATATGGGATTCTATCTT+TGG 0.201004 3_2:+90241345 Msa0436620:CDS
GGATTCTATCTTTGGTAATA+TGG 0.203494 3_2:+90241353 Msa0436620:CDS
AGGACAATCGTCTTCGTATA+TGG 0.237095 3_2:+90241331 Msa0436620:CDS
AACACCTGGAAAATGCTTTA+TGG 0.242204 3_2:+90240581 Msa0436620:CDS
TATGCATGCGACTTCTCTTT+TGG 0.245861 3_2:+90242690 Msa0436620:three_prime_UTR
CAAAGAAAACAAGGTTTCAT+AGG 0.255454 3_2:-90238161 None:intergenic
CCTATAAATGGTTAGCAGTT+TGG 0.260566 3_2:-90242614 None:intergenic
CATGCCATCCATCAGGATTC+AGG 0.269004 3_2:-90240400 None:intergenic
AACCATTAGTTGTACTGATT+TGG 0.271261 3_2:+90240349 Msa0436620:CDS
CAGCTTTGAAGGGTGTTAAA+TGG 0.287007 3_2:-90241419 None:intergenic
CACATACTCCAAAGGTTTAG+AGG 0.287821 3_2:-90239324 None:intergenic
TCCTGGCAACCGGGAGTTCT+AGG 0.311872 3_2:+90241724 Msa0436620:CDS
CTATATTGTAGGCGCGCATT+TGG 0.318325 3_2:+90241196 Msa0436620:intron
GCATATTTCTCTCCAATAAC+TGG 0.326448 3_2:+90241285 Msa0436620:CDS
TCTCTTTCAATGAGAACTTT+GGG 0.330765 3_2:-90237796 None:intergenic
ATTTAAAAGTGACTATCTAT+TGG 0.343886 3_2:-90242914 None:intergenic
AAATGAAAAGATTGAGAAAC+TGG 0.345976 3_2:+90237909 Msa0436620:CDS
TTGGTCTGGAATCACACATT+TGG 0.346565 3_2:-90239887 None:intergenic
TGGATCCCATTCAGCTTTGA+AGG 0.350384 3_2:-90241430 None:intergenic
CATGACTATGCACAATTTCT+CGG 0.350606 3_2:-90241386 None:intergenic
GTGAAGAAAGCCAAAGTTAT+CGG 0.353261 3_2:-90240642 None:intergenic
AGAAAGGACAACTTGGAGTC+TGG 0.357633 3_2:+90240099 Msa0436620:intron
GGAGCTTGGTAACCTATAAA+TGG 0.367149 3_2:-90242626 None:intergenic
CTTCCATCGTCACCGCAAAA+AGG 0.371769 3_2:+90237718 Msa0436620:five_prime_UTR
GGACTGATGGTTGTGATGTT+CGG 0.374930 3_2:-90241672 None:intergenic
TTTCTGAGAGTTAGCGTAAT+GGG 0.378118 3_2:-90237967 None:intergenic
GTCTCTTTCAATGAGAACTT+TGG 0.378205 3_2:-90237797 None:intergenic
TTAGAGTCACTCGCTGTTGT+TGG 0.388644 3_2:+90241555 Msa0436620:CDS
TGGTCTGGAATCACACATTT+GGG 0.388716 3_2:-90239886 None:intergenic
CGCGATGATATCCTGGCAAC+CGG 0.395646 3_2:+90241714 Msa0436620:CDS
TACTGAGCATGGTGTTGTTC+CGG 0.398936 3_2:+90239286 Msa0436620:CDS
CTTGTATCTATAAAATCAAT+AGG 0.399051 3_2:-90241618 None:intergenic
TAATCCTACAAATGATTGTA+TGG 0.401174 3_2:+90240304 Msa0436620:CDS
CAATTTCCATTCAGTCTGCT+TGG 0.404544 3_2:-90242519 None:intergenic
TAGGTGACTTCTCTTTGTAT+AGG 0.406531 3_2:+90242748 Msa0436620:three_prime_UTR
GACTGATGGTTGTGATGTTC+GGG 0.410135 3_2:-90241671 None:intergenic
TGCATCACCATTCCTATGAT+TGG 0.418131 3_2:-90240999 None:intergenic
CCACAAGTCAAAAGGATGTC+TGG 0.420331 3_2:-90241079 None:intergenic
CATCCTGTTGTCGGGAGATA+AGG 0.421944 3_2:+90239981 Msa0436620:CDS
CTCCAAATCAGTACAACTAA+TGG 0.423674 3_2:-90240351 None:intergenic
TATATTGTAGGCGCGCATTT+GGG 0.425675 3_2:+90241197 Msa0436620:intron
ACCTAGAACTCCCGGTTGCC+AGG 0.426830 3_2:-90241725 None:intergenic
TCGACATGCGGTCCAATCAT+AGG 0.436742 3_2:+90240987 Msa0436620:CDS
CACTTTGAATTGTCCACATC+GGG 0.441106 3_2:+90239259 Msa0436620:CDS
AGTTGTACTGATTTGGAGAC+TGG 0.447052 3_2:+90240356 Msa0436620:CDS
GAATACAAAAGCGTGAAGAT+AGG 0.449811 3_2:-90242799 None:intergenic
CTGGAAAATGCTTTATGGTA+TGG 0.452127 3_2:+90240586 Msa0436620:CDS
TAGACCATACAATCATTTGT+AGG 0.454241 3_2:-90240308 None:intergenic
CTGTATAGAGAAAATTTGGT+TGG 0.455317 3_2:+90242855 Msa0436620:three_prime_UTR
ATCTGAGACGGTCGAGGAGA+AGG 0.459772 3_2:+90242379 Msa0436620:CDS
GGACAATCGTCTTCGTATAT+GGG 0.460807 3_2:+90241332 Msa0436620:CDS
TGTATAGAGAAAATTTGGTT+GGG 0.462057 3_2:+90242856 Msa0436620:three_prime_UTR
CTGTTATCAGATATCATAGT+AGG 0.462205 3_2:+90239920 Msa0436620:CDS
ACAGCGCAACTCACTTGGTC+TGG 0.463787 3_2:-90239901 None:intergenic
AATGAGAACTTTGGGGAAAG+AGG 0.464363 3_2:-90237788 None:intergenic
CTATCTATTGGCAAATCTGT+TGG 0.470268 3_2:-90242902 None:intergenic
TAACACCCTTCAAAGCTGAA+TGG 0.473837 3_2:+90241424 Msa0436620:CDS
AAAAGGATGTCTGGTTGCAT+TGG 0.474611 3_2:-90241070 None:intergenic
TAGGAATGGCATGTCTTAGC+TGG 0.475369 3_2:-90239355 None:intergenic
TATCTATTGGCAAATCTGTT+GGG 0.478194 3_2:-90242901 None:intergenic
GTGCTCGTGGCCGATAACTT+TGG 0.480261 3_2:+90240632 Msa0436620:CDS
TAACCTTATCTCCCGACAAC+AGG 0.480848 3_2:-90239984 None:intergenic
CTATAAAATCAATAGGATGC+AGG 0.481005 3_2:-90241611 None:intergenic
AATATTACATGCCATCCATC+AGG 0.482629 3_2:-90240407 None:intergenic
TCATCCACGCGATGATATCC+TGG 0.483670 3_2:+90241707 Msa0436620:CDS
AAAGAGGTTCTACGAGTAAC+CGG 0.483672 3_2:-90237772 None:intergenic
GATCATTTCCACAAGTCAAA+AGG 0.485595 3_2:-90241087 None:intergenic
GAAAGGACAACTTGGAGTCT+GGG 0.485905 3_2:+90240100 Msa0436620:intron
ACAACAGCGAGTGACTCTAA+TGG 0.486270 3_2:-90241552 None:intergenic
AACACCCTTCAAAGCTGAAT+GGG 0.487045 3_2:+90241425 Msa0436620:CDS
AAGAATAACATCCTGTTGTC+GGG 0.488018 3_2:+90239973 Msa0436620:CDS
TTTACTAGGGGCCAAACACC+TGG 0.499445 3_2:+90240567 Msa0436620:intron
ACTATGCACAATTTCTCGGC+TGG 0.500089 3_2:-90241382 None:intergenic
AAAGAAAACAAGGTTTCATA+GGG 0.501938 3_2:-90238160 None:intergenic
TATAAAATCAATAGGATGCA+GGG 0.504604 3_2:-90241610 None:intergenic
GTATCATATGCATATTAGAT+TGG 0.505097 3_2:+90242725 Msa0436620:three_prime_UTR
ATCGATGAATCCGATGATGA+TGG 0.505501 3_2:+90242467 Msa0436620:CDS
GAAGAATAACATCCTGTTGT+CGG 0.505802 3_2:+90239972 Msa0436620:CDS
TTAAAACCCGCTTCATGACC+AGG 0.507060 3_2:-90238116 None:intergenic
TTCGGTTCGGTTCTTTAACA+TGG 0.507966 3_2:+90237747 Msa0436620:exon
CATATGCATATTAGATTGGT+AGG 0.510662 3_2:+90242729 Msa0436620:three_prime_UTR
CTGAGAAGAAACGTGGTAAG+AGG 0.511583 3_2:+90242432 Msa0436620:CDS
TTTGCGGTGACGATGGAAGC+GGG 0.513533 3_2:-90237714 None:intergenic
TCATAAAAGAAAGGACAACT+TGG 0.517742 3_2:+90240092 Msa0436620:intron
GGATCCCATTCAGCTTTGAA+GGG 0.518856 3_2:-90241429 None:intergenic
GAAAGCAAAATTGTGGTTTG+TGG 0.518880 3_2:+90242404 Msa0436620:CDS
GTCTATTCCGCATCCTCGGA+TGG 0.519643 3_2:+90240326 Msa0436620:CDS
TAACAACACGCTTGTGCTCA+AGG 0.528107 3_2:-90241257 None:intergenic
AAGCTTATTCACCGGACTGA+TGG 0.528676 3_2:-90241685 None:intergenic
TGATAACAGCGCAACTCACT+TGG 0.530316 3_2:-90239906 None:intergenic
AAAGATTGAGAAACTGGAAG+TGG 0.531341 3_2:+90237915 Msa0436620:CDS
ATGGATATTCACTATGAGAA+AGG 0.532012 3_2:+90240605 Msa0436620:CDS
CAAAATCCAAGCAGACTGAA+TGG 0.532156 3_2:+90242513 Msa0436620:CDS
CTCTTTCAATGAGAACTTTG+GGG 0.535912 3_2:-90237795 None:intergenic
TGAGAAGGTTTACGAGAAAG+TGG 0.536172 3_2:+90240127 Msa0436620:CDS
CTATGCACAATTTCTCGGCT+GGG 0.540395 3_2:-90241381 None:intergenic
CCATCAGGATTCAGGTTCAT+CGG 0.543513 3_2:-90240392 None:intergenic
AAGAAGCCTGGTCATGAAGC+GGG 0.545678 3_2:+90238110 Msa0436620:CDS
AATGGTTCCATCCGAGGATG+CGG 0.547198 3_2:-90240333 None:intergenic
CAAAATTCTTACTACGTCAC+AGG 0.548895 3_2:+90241311 Msa0436620:CDS
AACTCTCAGAAAAGTTTGCA+AGG 0.549049 3_2:+90237978 Msa0436620:CDS
GATATGCGTCACTTAGAAGC+TGG 0.550288 3_2:+90241219 Msa0436620:CDS
AAGATTGAGAAACTGGAAGT+GGG 0.551746 3_2:+90237916 Msa0436620:CDS
TATGGTCTATTCCGCATCCT+CGG 0.554175 3_2:+90240322 Msa0436620:CDS
CCGATGAACCTGAATCCTGA+TGG 0.557467 3_2:+90240392 Msa0436620:CDS
TTACAGGTGTGTAAGAAGCC+TGG 0.560215 3_2:+90238098 Msa0436620:intron
AAGAAACGTGGTAAGAGGAA+AGG 0.563572 3_2:+90242437 Msa0436620:CDS
ACAGGATGTTATTCTTCGTA+GGG 0.566721 3_2:-90239966 None:intergenic
TAGTAGGCGGATAACAAGCT+TGG 0.572553 3_2:+90239936 Msa0436620:CDS
GCAGTTGGTAGCAGAAGTCA+TGG 0.572898 3_2:+90241647 Msa0436620:CDS
TCATTCATACCTAGAACTCC+CGG 0.574789 3_2:-90241733 None:intergenic
AGATACAAGTACAGGGCAGT+TGG 0.578810 3_2:+90241632 Msa0436620:CDS
TGAGAAAGGTCTTGTGCTCG+TGG 0.581673 3_2:+90240619 Msa0436620:CDS
GGAAATGAATCCATCATCAT+CGG 0.582701 3_2:-90242477 None:intergenic
TCTGTTCATTTGGAAGCCAA+AGG 0.589673 3_2:+90242352 Msa0436620:CDS
TCGGTTCTTTAACATGGCAC+CGG 0.592131 3_2:+90237753 Msa0436620:exon
CAAAGCTGAATGGGATCCAA+AGG 0.592946 3_2:+90241434 Msa0436620:CDS
GAACATCACAACCATCAGTC+CGG 0.595957 3_2:+90241674 Msa0436620:CDS
ACTTAGGCTTACCGTAGGAA+TGG 0.598093 3_2:-90239369 None:intergenic
ATGCGGTCCAATCATAGGAA+TGG 0.598179 3_2:+90240992 Msa0436620:CDS
GGATGTTATTCTTCGTAGGG+TGG 0.599457 3_2:-90239963 None:intergenic
ATTGTCTCGCTGCTCGACAA+AGG 0.600055 3_2:+90242538 Msa0436620:CDS
CTGGTTGCATTGGATTGCAA+TGG 0.602433 3_2:-90241060 None:intergenic
CGTGGATGAAGCTTATTCAC+CGG 0.603561 3_2:-90241693 None:intergenic
ACAACTAATGGTTCCATCCG+AGG 0.607521 3_2:-90240339 None:intergenic
TAAGAAGCCTGGTCATGAAG+CGG 0.617194 3_2:+90238109 Msa0436620:CDS
CATCGGGTCACTACTGAGCA+TGG 0.620894 3_2:+90239275 Msa0436620:CDS
CGTTCAAACACATACTCCAA+AGG 0.622066 3_2:-90239332 None:intergenic
GCGATGATATCCTGGCAACC+GGG 0.623661 3_2:+90241715 Msa0436620:CDS
AACAGGATGTTATTCTTCGT+AGG 0.624223 3_2:-90239967 None:intergenic
GAAGGACGAAAGCAAAATTG+TGG 0.625614 3_2:+90242397 Msa0436620:CDS
CCACTTTGAATTGTCCACAT+CGG 0.628827 3_2:+90239258 Msa0436620:CDS
TGCTCAGTAGTGACCCGATG+TGG 0.633127 3_2:-90239272 None:intergenic
AGAAGAAGAAGCACTCGAGG+AGG 0.636304 3_2:+90237852 Msa0436620:CDS
GCTAAGACATGCCATTCCTA+CGG 0.637351 3_2:+90239358 Msa0436620:CDS
GCTTGTGCTCAAGGCTACAG+AGG 0.642505 3_2:-90241248 None:intergenic
AGAAGAAGAAGAAGCACTCG+AGG 0.642739 3_2:+90237849 Msa0436620:CDS
TGAACCTGAATCCTGATGGA+TGG 0.648338 3_2:+90240396 Msa0436620:CDS
CTTGTGCTCAAGGCTACAGA+GGG 0.650690 3_2:-90241247 None:intergenic
GTGTTGGGAGTTGAACAGAA+AGG 0.651463 3_2:-90237629 None:intergenic
TCATTTACAGGGTCGACATG+CGG 0.654000 3_2:+90240975 Msa0436620:intron
AGGATTCAGGTTCATCGGAG+AGG 0.675833 3_2:-90240387 None:intergenic
TTATCAGATATCATAGTAGG+CGG 0.676415 3_2:+90239923 Msa0436620:CDS
CCGATGTGGACAATTCAAAG+TGG 0.705167 3_2:-90239258 None:intergenic
GTTGCCAGGATATCATCGCG+TGG 0.707132 3_2:-90241711 None:intergenic
TTGAACAGAAAGGAACAGTG+TGG 0.715365 3_2:-90237619 None:intergenic
GGAAAAGCTGAGAAGAAACG+TGG 0.725862 3_2:+90242425 Msa0436620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAACAATTTAATTAT+TGG - chr3_2:90239719-90239738 None:intergenic 10.0%
!!! TATATAAGTGAAAATTTTAA+TGG + chr3_2:90241582-90241601 Msa0436620:CDS 10.0%
!!! ATATTTTAAAAGAATGACTT+AGG - chr3_2:90239388-90239407 None:intergenic 15.0%
!!! TTTTAATTGAAAAACTTTGT+AGG + chr3_2:90240279-90240298 Msa0436620:intron 15.0%
!!! TTGAATATGTTTCTTTTAAT+TGG + chr3_2:90240771-90240790 Msa0436620:intron 15.0%
!! ATTCTTAAAAAGATAAATGT+TGG - chr3_2:90240869-90240888 None:intergenic 15.0%
!!! TAAAATTTTCACTTATATAG+CGG - chr3_2:90241581-90241600 None:intergenic 15.0%
!! AATCAAAATTTCAACTTTAA+AGG - chr3_2:90242071-90242090 None:intergenic 15.0%
!! TTTGTTAATTAGATATACAT+AGG + chr3_2:90242246-90242265 Msa0436620:intron 15.0%
!! AAGCTATATTATTAATCTTA+AGG + chr3_2:90242297-90242316 Msa0436620:intron 15.0%
!! AGCTATATTATTAATCTTAA+GGG + chr3_2:90242298-90242317 Msa0436620:intron 15.0%
!!! TATTGGAATTTTGTTATTAC+AGG + chr3_2:90238082-90238101 Msa0436620:intron 20.0%
!!! TCTTCAAAGTTGATTTTATA+TGG + chr3_2:90238379-90238398 Msa0436620:intron 20.0%
!! CTGATAATAGTTTAAGTAAA+TGG + chr3_2:90238492-90238511 Msa0436620:intron 20.0%
!! AGTATACATTGAAATTTGAA+TGG - chr3_2:90238927-90238946 None:intergenic 20.0%
!!! TCCTTTTAATATTTTCATTG+TGG + chr3_2:90239688-90239707 Msa0436620:intron 20.0%
!! TCCACAATGAAAATATTAAA+AGG - chr3_2:90239692-90239711 None:intergenic 20.0%
!! TGAATGATACATAAACATTA+TGG - chr3_2:90239790-90239809 None:intergenic 20.0%
!!! TTGTATGTGTTATTTTTACT+AGG + chr3_2:90240553-90240572 Msa0436620:intron 20.0%
!!! TGTATGTGTTATTTTTACTA+GGG + chr3_2:90240554-90240573 Msa0436620:intron 20.0%
!!! TATTACATTTTAGGACTATA+TGG - chr3_2:90240718-90240737 None:intergenic 20.0%
!! AAAAAATTCATAACTACGAA+GGG - chr3_2:90240812-90240831 None:intergenic 20.0%
!! AAAATAAGTAGAAACGAAAA+GGG - chr3_2:90241501-90241520 None:intergenic 20.0%
!! TAAAATAAGTAGAAACGAAA+AGG - chr3_2:90241502-90241521 None:intergenic 20.0%
!! AATATTGTTTATGTAATTGC+AGG + chr3_2:90241527-90241546 Msa0436620:intron 20.0%
!! CTTGTATCTATAAAATCAAT+AGG - chr3_2:90241621-90241640 None:intergenic 20.0%
!!! ATTTTATAGATACAAGTACA+GGG + chr3_2:90241625-90241644 Msa0436620:CDS 20.0%
!!! TTTTGATTTACAAAATTGCA+AGG + chr3_2:90242083-90242102 Msa0436620:intron 20.0%
!!! TTTGATTTACAAAATTGCAA+GGG + chr3_2:90242084-90242103 Msa0436620:intron 20.0%
!!! GTTACTTGATATAATTTTTC+AGG + chr3_2:90242327-90242346 Msa0436620:intron 20.0%
!! ATTTAAAAGTGACTATCTAT+TGG - chr3_2:90242917-90242936 None:intergenic 20.0%
!!! TTTGTTTTTGTTTGAGTGTT+GGG - chr3_2:90237647-90237666 None:intergenic 25.0%
!!! TTTTGTTTTTGTTTGAGTGT+TGG - chr3_2:90237648-90237667 None:intergenic 25.0%
! AAGAAGAAGAAGAAGAAAAT+GGG + chr3_2:90237878-90237897 Msa0436620:CDS 25.0%
! AAATGAAAAGATTGAGAAAC+TGG + chr3_2:90237909-90237928 Msa0436620:CDS 25.0%
! AAAGAAAACAAGGTTTCATA+GGG - chr3_2:90238163-90238182 None:intergenic 25.0%
!!! TTTGATTTTACTAGTGAATG+TGG + chr3_2:90238237-90238256 Msa0436620:intron 25.0%
! AAAAATGTTGTGTTTGTTTG+AGG + chr3_2:90238316-90238335 Msa0436620:intron 25.0%
!!! GTTGATTTTATATGGAACAA+AGG + chr3_2:90238387-90238406 Msa0436620:intron 25.0%
!!! TGATTGATTTGTTCTTGTTA+AGG + chr3_2:90238437-90238456 Msa0436620:intron 25.0%
! AACACAATGTTGTCAAATTA+CGG + chr3_2:90238661-90238680 Msa0436620:intron 25.0%
! ACTATCCTAGATTCATAATT+AGG + chr3_2:90238731-90238750 Msa0436620:intron 25.0%
! CTATCCTAGATTCATAATTA+GGG + chr3_2:90238732-90238751 Msa0436620:intron 25.0%
! AAGTTGCATACAAATAACAA+AGG - chr3_2:90238962-90238981 None:intergenic 25.0%
!! ATTTTACCAATTAGGAATGA+TGG + chr3_2:90239116-90239135 Msa0436620:intron 25.0%
! CAATTCAATATCACAAAAGA+TGG - chr3_2:90239229-90239248 None:intergenic 25.0%
!! CTTTTGTGATATTGAATTGA+AGG + chr3_2:90239230-90239249 Msa0436620:intron 25.0%
!!! CTTTAGTTTTGAAGAATGTT+AGG + chr3_2:90239413-90239432 Msa0436620:intron 25.0%
!! CTGTTTTATGTGTTTCAATA+TGG + chr3_2:90239476-90239495 Msa0436620:intron 25.0%
! CAATATGGTATATTGTGATT+TGG + chr3_2:90239491-90239510 Msa0436620:intron 25.0%
!! TAATTACATGACGGAAAAAA+GGG - chr3_2:90239558-90239577 None:intergenic 25.0%
!! ATAATTACATGACGGAAAAA+AGG - chr3_2:90239559-90239578 None:intergenic 25.0%
! TAAGCCTTCAATTTATGAAT+AGG - chr3_2:90239642-90239661 None:intergenic 25.0%
! TCATATATGAAGGACTAAAT+AGG - chr3_2:90239765-90239784 None:intergenic 25.0%
! TATGATTAAAGCAGAAAAAG+AGG - chr3_2:90240077-90240096 None:intergenic 25.0%
! CTGCTTTAATCATAAAAGAA+AGG + chr3_2:90240083-90240102 Msa0436620:intron 25.0%
! GAAAATGAACAATTACATGA+AGG - chr3_2:90240217-90240236 None:intergenic 25.0%
! TAATCCTACAAATGATTGTA+TGG + chr3_2:90240304-90240323 Msa0436620:CDS 25.0%
!!! GTATGTGTTATTTTTACTAG+GGG + chr3_2:90240555-90240574 Msa0436620:intron 25.0%
! GAAAAAATTCATAACTACGA+AGG - chr3_2:90240813-90240832 None:intergenic 25.0%
!!! GTAGTTATGAATTTTTTCCT+TGG + chr3_2:90240815-90240834 Msa0436620:intron 25.0%
!!! TATGAATTTTTTCCTTGGTT+AGG + chr3_2:90240820-90240839 Msa0436620:intron 25.0%
!!! ATGAATTTTTTCCTTGGTTA+GGG + chr3_2:90240821-90240840 Msa0436620:intron 25.0%
! AAAGATAAATGTTGGAAAGA+TGG - chr3_2:90240861-90240880 None:intergenic 25.0%
!! AATTGGTTTCATATATGACA+TGG - chr3_2:90240926-90240945 None:intergenic 25.0%
!!! TAACTTTGCTACCTTTTTTA+TGG - chr3_2:90241033-90241052 None:intergenic 25.0%
! CAAAATGGTTTCTATATTGT+AGG + chr3_2:90241185-90241204 Msa0436620:intron 25.0%
!!! AGAATTTTGTTTCCAGTTAT+TGG - chr3_2:90241300-90241319 None:intergenic 25.0%
! TTAAACAAAAAAGCTACCTT+TGG - chr3_2:90241453-90241472 None:intergenic 25.0%
! TATAAAATCAATAGGATGCA+GGG - chr3_2:90241613-90241632 None:intergenic 25.0%
!! GATTTTATAGATACAAGTAC+AGG + chr3_2:90241624-90241643 Msa0436620:CDS 25.0%
!! ATCTTTTGTCATACATAGAA+AGG - chr3_2:90241826-90241845 None:intergenic 25.0%
!!! TCTTGTTGGTTTAAAACATT+GGG + chr3_2:90241917-90241936 Msa0436620:intron 25.0%
! AAAGGCTTAAAAATTTGAAG+AGG - chr3_2:90242053-90242072 None:intergenic 25.0%
! TTCTGTATCCATACTATTAA+AGG - chr3_2:90242278-90242297 None:intergenic 25.0%
! GTATCATATGCATATTAGAT+TGG + chr3_2:90242725-90242744 Msa0436620:three_prime_UTR 25.0%
! TCTTCTGTATAGAGAAAATT+TGG + chr3_2:90242851-90242870 Msa0436620:three_prime_UTR 25.0%
! TGTATAGAGAAAATTTGGTT+GGG + chr3_2:90242856-90242875 Msa0436620:three_prime_UTR 25.0%
!! TTTCACCACTTGTTTGTTTT+TGG - chr3_2:90237566-90237585 None:intergenic 30.0%
CGAAGACAAAAAGAAAGAAA+GGG - chr3_2:90237671-90237690 None:intergenic 30.0%
ACGAAGACAAAAAGAAAGAA+AGG - chr3_2:90237672-90237691 None:intergenic 30.0%
TCTCTTTCAATGAGAACTTT+GGG - chr3_2:90237799-90237818 None:intergenic 30.0%
GAAGAAGAAGAAGAAGAAAA+TGG + chr3_2:90237877-90237896 Msa0436620:CDS 30.0%
AGAAGAAGAAGAAGAAAATG+GGG + chr3_2:90237879-90237898 Msa0436620:CDS 30.0%
!! GTTTTGATGCTAATAGGAAA+GGG + chr3_2:90237938-90237957 Msa0436620:CDS 30.0%
!! AAGTTTGCAAGGTTTGTTAA+TGG + chr3_2:90237989-90238008 Msa0436620:intron 30.0%
!! TCAAGTTGCGATTTTTCTTA+TGG + chr3_2:90238058-90238077 Msa0436620:intron 30.0%
! CAAGTTGCGATTTTTCTTAT+GGG + chr3_2:90238059-90238078 Msa0436620:intron 30.0%
CAAAGAAAACAAGGTTTCAT+AGG - chr3_2:90238164-90238183 None:intergenic 30.0%
! GGAGTTTTACAAAGAAAACA+AGG - chr3_2:90238173-90238192 None:intergenic 30.0%
! TGTTTTCTTTGTAAAACTCC+TGG + chr3_2:90238173-90238192 Msa0436620:CDS 30.0%
!!! ATGTTGATTTTCAACTTACC+AGG - chr3_2:90238194-90238213 None:intergenic 30.0%
ATTCCTCGTATTGTTTGTAT+TGG + chr3_2:90238212-90238231 Msa0436620:intron 30.0%
ATACCAATACAAACAATACG+AGG - chr3_2:90238218-90238237 None:intergenic 30.0%
! TGTGGTTTGATGATATATGA+TGG + chr3_2:90238255-90238274 Msa0436620:intron 30.0%
!! GAACAAAGGTGATTTTGTTT+TGG + chr3_2:90238401-90238420 Msa0436620:intron 30.0%
ATTTGTTCTTGTTAAGGACT+AGG + chr3_2:90238443-90238462 Msa0436620:intron 30.0%
TTTGTTCTTGTTAAGGACTA+GGG + chr3_2:90238444-90238463 Msa0436620:intron 30.0%
TGTCTGACATCAATAAATGT+CGG + chr3_2:90238526-90238545 Msa0436620:intron 30.0%
! ATTATGAATCTAGGATAGTG+TGG - chr3_2:90238730-90238749 None:intergenic 30.0%
GTTACCCTAATTATGAATCT+AGG - chr3_2:90238739-90238758 None:intergenic 30.0%
ATTCATAATTAGGGTAACAG+CGG + chr3_2:90238741-90238760 Msa0436620:intron 30.0%
GGGGAAAAGATAGAAATTTA+GGG + chr3_2:90238793-90238812 Msa0436620:intron 30.0%
GGGAAAAGATAGAAATTTAG+GGG + chr3_2:90238794-90238813 Msa0436620:intron 30.0%
GAGTATTAATCCTACATTCA+CGG + chr3_2:90238890-90238909 Msa0436620:intron 30.0%
TGAAATATCAGATAGAGTTG+CGG - chr3_2:90239036-90239055 None:intergenic 30.0%
CTATCTGATATTTCACATAG+TGG + chr3_2:90239041-90239060 Msa0436620:intron 30.0%
! AAAATGAAGAGTGTATGTCT+GGG - chr3_2:90239101-90239120 None:intergenic 30.0%
! TAAAATGAAGAGTGTATGTC+TGG - chr3_2:90239102-90239121 None:intergenic 30.0%
! CACTCTTCATTTTACCAATT+AGG + chr3_2:90239108-90239127 Msa0436620:intron 30.0%
AGATAACCATCATTCCTAAT+TGG - chr3_2:90239125-90239144 None:intergenic 30.0%
CAGTGTAAACGAAAAAGTAA+TGG - chr3_2:90239522-90239541 None:intergenic 30.0%
TTTGCACGATAATTACATGA+CGG - chr3_2:90239567-90239586 None:intergenic 30.0%
CTTCAATTTATGAATAGGTG+TGG - chr3_2:90239637-90239656 None:intergenic 30.0%
CACACCTATTCATAAATTGA+AGG + chr3_2:90239635-90239654 Msa0436620:intron 30.0%
CATTATGGACTCATATATGA+AGG - chr3_2:90239775-90239794 None:intergenic 30.0%
CTGTTATCAGATATCATAGT+AGG + chr3_2:90239920-90239939 Msa0436620:CDS 30.0%
TTATCAGATATCATAGTAGG+CGG + chr3_2:90239923-90239942 Msa0436620:CDS 30.0%
TCATAAAAGAAAGGACAACT+TGG + chr3_2:90240092-90240111 Msa0436620:intron 30.0%
TAGACCATACAATCATTTGT+AGG - chr3_2:90240311-90240330 None:intergenic 30.0%
!! AACCATTAGTTGTACTGATT+TGG + chr3_2:90240349-90240368 Msa0436620:CDS 30.0%
ATGGATATTCACTATGAGAA+AGG + chr3_2:90240605-90240624 Msa0436620:CDS 30.0%
! GGAGGGATATATTACATTTT+AGG - chr3_2:90240727-90240746 None:intergenic 30.0%
CTATAGCCAACAAAATTTGA+TGG - chr3_2:90240748-90240767 None:intergenic 30.0%
CAATTTATATTCCCTAACCA+AGG - chr3_2:90240835-90240854 None:intergenic 30.0%
TAGTCATTGAGTCCAAAAAA+AGG + chr3_2:90240892-90240911 Msa0436620:intron 30.0%
!!! ATGGCTATTGATCCTTTTTT+TGG - chr3_2:90240907-90240926 None:intergenic 30.0%
!! GCAGTTTTGATCCATAAAAA+AGG + chr3_2:90241019-90241038 Msa0436620:CDS 30.0%
AAAAAAGGTAGCAAAGTTAC+TGG + chr3_2:90241034-90241053 Msa0436620:CDS 30.0%
! GGATTCTATCTTTGGTAATA+TGG + chr3_2:90241353-90241372 Msa0436620:CDS 30.0%
CTATAAAATCAATAGGATGC+AGG - chr3_2:90241614-90241633 None:intergenic 30.0%
ACGATTAGTATGATTATCTG+AGG - chr3_2:90241763-90241782 None:intergenic 30.0%
!! CTCTTGTTGGTTTAAAACAT+TGG + chr3_2:90241916-90241935 Msa0436620:intron 30.0%
AAAATTGAACCTACACAAAG+TGG + chr3_2:90241951-90241970 Msa0436620:intron 30.0%
! TTTAGCACTCACTCTTTTAT+TGG - chr3_2:90241998-90242017 None:intergenic 30.0%
TACATGAGTTTACTCTTCAA+TGG - chr3_2:90242130-90242149 None:intergenic 30.0%
AACCCCAAAAAACATAAGAA+GGG - chr3_2:90242650-90242669 None:intergenic 30.0%
!!! TTCTTATGTTTTTTGGGGTT+GGG + chr3_2:90242650-90242669 Msa0436620:three_prime_UTR 30.0%
CATATGCATATTAGATTGGT+AGG + chr3_2:90242729-90242748 Msa0436620:three_prime_UTR 30.0%
CTGTATAGAGAAAATTTGGT+TGG + chr3_2:90242855-90242874 Msa0436620:three_prime_UTR 30.0%
TATCTATTGGCAAATCTGTT+GGG - chr3_2:90242904-90242923 None:intergenic 30.0%
CTCTTTCAATGAGAACTTTG+GGG - chr3_2:90237798-90237817 None:intergenic 35.0%
GTCTCTTTCAATGAGAACTT+TGG - chr3_2:90237800-90237819 None:intergenic 35.0%
AAAGATTGAGAAACTGGAAG+TGG + chr3_2:90237915-90237934 Msa0436620:CDS 35.0%
AAGATTGAGAAACTGGAAGT+GGG + chr3_2:90237916-90237935 Msa0436620:CDS 35.0%
!! AAGTGGGTTTTGATGCTAAT+AGG + chr3_2:90237932-90237951 Msa0436620:CDS 35.0%
!! GGTTTTGATGCTAATAGGAA+AGG + chr3_2:90237937-90237956 Msa0436620:CDS 35.0%
! TTTCTGAGAGTTAGCGTAAT+GGG - chr3_2:90237970-90237989 None:intergenic 35.0%
!! TTTTCTGAGAGTTAGCGTAA+TGG - chr3_2:90237971-90237990 None:intergenic 35.0%
AACTCTCAGAAAAGTTTGCA+AGG + chr3_2:90237978-90237997 Msa0436620:CDS 35.0%
!! CAAGGTTTGTTAATGGTCAT+TGG + chr3_2:90237996-90238015 Msa0436620:intron 35.0%
! GCGATTTTTCTTATGGGTAT+TGG + chr3_2:90238065-90238084 Msa0436620:intron 35.0%
AGAGTATGTTGTGTCATGTT+TGG + chr3_2:90238343-90238362 Msa0436620:intron 35.0%
GAGTATGTTGTGTCATGTTT+GGG + chr3_2:90238344-90238363 Msa0436620:intron 35.0%
CATCAATAAATGTCGGATAC+TGG + chr3_2:90238533-90238552 Msa0436620:intron 35.0%
! TAGTGTGGCAGTTTTTATAG+CGG - chr3_2:90238715-90238734 None:intergenic 35.0%
CGGGGAAAAGATAGAAATTT+AGG + chr3_2:90238792-90238811 Msa0436620:intron 35.0%
TTGCATATTACCGTGAATGT+AGG - chr3_2:90238903-90238922 None:intergenic 35.0%
! TTGTCTCGTATTTTTCTCTC+TGG + chr3_2:90239153-90239172 Msa0436620:intron 35.0%
! AAGGTTTAGAGGTTTTTCTG+CGG - chr3_2:90239316-90239335 None:intergenic 35.0%
CAGAAAAACCTCTAAACCTT+TGG + chr3_2:90239316-90239335 Msa0436620:CDS 35.0%
GAATCACAACTGCAAATTAG+TGG - chr3_2:90239450-90239469 None:intergenic 35.0%
! AGAGTTTTTGCTCGAACTTA+GGG + chr3_2:90239665-90239684 Msa0436620:intron 35.0%
TGTATCATTCACTTTGTTCC+AGG + chr3_2:90239799-90239818 Msa0436620:intron 35.0%
ACAGGATGTTATTCTTCGTA+GGG - chr3_2:90239969-90239988 None:intergenic 35.0%
AACAGGATGTTATTCTTCGT+AGG - chr3_2:90239970-90239989 None:intergenic 35.0%
GAAGAATAACATCCTGTTGT+CGG + chr3_2:90239972-90239991 Msa0436620:CDS 35.0%
AAGAATAACATCCTGTTGTC+GGG + chr3_2:90239973-90239992 Msa0436620:CDS 35.0%
AGGAATCAGTGGCTAAATAA+AGG - chr3_2:90240057-90240076 None:intergenic 35.0%
CTCCAAATCAGTACAACTAA+TGG - chr3_2:90240354-90240373 None:intergenic 35.0%
AATATTACATGCCATCCATC+AGG - chr3_2:90240410-90240429 None:intergenic 35.0%
!! TAAAGCATTTTCCAGGTGTT+TGG - chr3_2:90240581-90240600 None:intergenic 35.0%
AACACCTGGAAAATGCTTTA+TGG + chr3_2:90240581-90240600 Msa0436620:CDS 35.0%
!! CATACCATAAAGCATTTTCC+AGG - chr3_2:90240588-90240607 None:intergenic 35.0%
CTGGAAAATGCTTTATGGTA+TGG + chr3_2:90240586-90240605 Msa0436620:CDS 35.0%
GTGAAGAAAGCCAAAGTTAT+CGG - chr3_2:90240645-90240664 None:intergenic 35.0%
! TTTAGGACTATATGGACATG+CGG - chr3_2:90240710-90240729 None:intergenic 35.0%
! ATCCCTCCATCAAATTTTGT+TGG + chr3_2:90240739-90240758 Msa0436620:intron 35.0%
AGCCAACAAAATTTGATGGA+GGG - chr3_2:90240744-90240763 None:intergenic 35.0%
TAGCCAACAAAATTTGATGG+AGG - chr3_2:90240745-90240764 None:intergenic 35.0%
GATATGTCTGGTATGCTAAT+TGG - chr3_2:90240943-90240962 None:intergenic 35.0%
!! TAACCTTCTGTGTCATTTAC+AGG + chr3_2:90240963-90240982 Msa0436620:intron 35.0%
!! AACCTTCTGTGTCATTTACA+GGG + chr3_2:90240964-90240983 Msa0436620:intron 35.0%
GATCATTTCCACAAGTCAAA+AGG - chr3_2:90241090-90241109 None:intergenic 35.0%
ACATGCATGCTGAAACAAAA+TGG + chr3_2:90241170-90241189 Msa0436620:intron 35.0%
GCATATTTCTCTCCAATAAC+TGG + chr3_2:90241285-90241304 Msa0436620:CDS 35.0%
CAAAATTCTTACTACGTCAC+AGG + chr3_2:90241311-90241330 Msa0436620:CDS 35.0%
CGTATATGGGATTCTATCTT+TGG + chr3_2:90241345-90241364 Msa0436620:CDS 35.0%
CATGACTATGCACAATTTCT+CGG - chr3_2:90241389-90241408 None:intergenic 35.0%
GGACTTTGCCTTTAATAGTA+TGG + chr3_2:90242267-90242286 Msa0436620:intron 35.0%
!!! TTTTCAGGTCTCTGTTCATT+TGG + chr3_2:90242342-90242361 Msa0436620:intron 35.0%
GAAAGCAAAATTGTGGTTTG+TGG + chr3_2:90242404-90242423 Msa0436620:CDS 35.0%
GGAAATGAATCCATCATCAT+CGG - chr3_2:90242480-90242499 None:intergenic 35.0%
!!! TTTCAGTTTTTTGTGCGTGA+AGG + chr3_2:90242582-90242601 Msa0436620:three_prime_UTR 35.0%
CCTATAAATGGTTAGCAGTT+TGG - chr3_2:90242617-90242636 None:intergenic 35.0%
CCAAACTGCTAACCATTTAT+AGG + chr3_2:90242614-90242633 Msa0436620:three_prime_UTR 35.0%
AAAAACATAAGAAGGGAGCT+TGG - chr3_2:90242643-90242662 None:intergenic 35.0%
!!! AGCTCCCTTCTTATGTTTTT+TGG + chr3_2:90242643-90242662 Msa0436620:three_prime_UTR 35.0%
!!! GCTCCCTTCTTATGTTTTTT+GGG + chr3_2:90242644-90242663 Msa0436620:three_prime_UTR 35.0%
!!! CTCCCTTCTTATGTTTTTTG+GGG + chr3_2:90242645-90242664 Msa0436620:three_prime_UTR 35.0%
CAACCCCAAAAAACATAAGA+AGG - chr3_2:90242651-90242670 None:intergenic 35.0%
!!! CTTCTTATGTTTTTTGGGGT+TGG + chr3_2:90242649-90242668 Msa0436620:three_prime_UTR 35.0%
!!! TCTTATGTTTTTTGGGGTTG+GGG + chr3_2:90242651-90242670 Msa0436620:three_prime_UTR 35.0%
TAGGTGACTTCTCTTTGTAT+AGG + chr3_2:90242748-90242767 Msa0436620:three_prime_UTR 35.0%
! GAATACAAAAGCGTGAAGAT+AGG - chr3_2:90242802-90242821 None:intergenic 35.0%
CTATCTATTGGCAAATCTGT+TGG - chr3_2:90242905-90242924 None:intergenic 35.0%
TTGAACAGAAAGGAACAGTG+TGG - chr3_2:90237622-90237641 None:intergenic 40.0%
AAAAAGGATCGCTTTCGGTT+CGG + chr3_2:90237734-90237753 Msa0436620:five_prime_UTR 40.0%
!! TTCGGTTCGGTTCTTTAACA+TGG + chr3_2:90237747-90237766 Msa0436620:exon 40.0%
AAAGAGGTTCTACGAGTAAC+CGG - chr3_2:90237775-90237794 None:intergenic 40.0%
! AATGAGAACTTTGGGGAAAG+AGG - chr3_2:90237791-90237810 None:intergenic 40.0%
CTTGTTAAGGACTAGGGAAA+AGG + chr3_2:90238450-90238469 Msa0436620:intron 40.0%
!! TCAGTGTATGACTTGTTTGC+AGG - chr3_2:90238476-90238495 None:intergenic 40.0%
GCTGTGAAGATATACATAGC+CGG + chr3_2:90238598-90238617 Msa0436620:intron 40.0%
! TACATAGCCGGTCTAGAATT+TGG + chr3_2:90238610-90238629 Msa0436620:intron 40.0%
CCTTCATCCAAATTCTAGAC+CGG - chr3_2:90238620-90238639 None:intergenic 40.0%
GAATTTGGATGAAGGAGACT+AGG + chr3_2:90238625-90238644 Msa0436620:intron 40.0%
CAGTTTCTGTTAGCCAATAG+CGG + chr3_2:90238772-90238791 Msa0436620:intron 40.0%
AGTTTCTGTTAGCCAATAGC+GGG + chr3_2:90238773-90238792 Msa0436620:intron 40.0%
! TTCTATCTTTTCCCCGCTAT+TGG - chr3_2:90238788-90238807 None:intergenic 40.0%
TCGTAGAAACACTGAAGAGT+TGG + chr3_2:90238866-90238885 Msa0436620:intron 40.0%
ATAGAGTTGCGGAAAACTAG+AGG - chr3_2:90239025-90239044 None:intergenic 40.0%
CCACTTTGAATTGTCCACAT+CGG + chr3_2:90239258-90239277 Msa0436620:CDS 40.0%
CACTTTGAATTGTCCACATC+GGG + chr3_2:90239259-90239278 Msa0436620:CDS 40.0%
! AGGTTTAGAGGTTTTTCTGC+GGG - chr3_2:90239315-90239334 None:intergenic 40.0%
CACATACTCCAAAGGTTTAG+AGG - chr3_2:90239327-90239346 None:intergenic 40.0%
CGTTCAAACACATACTCCAA+AGG - chr3_2:90239335-90239354 None:intergenic 40.0%
! GAGAGTTTTTGCTCGAACTT+AGG + chr3_2:90239664-90239683 Msa0436620:intron 40.0%
TGTTCCAGGCTATTGATCAT+AGG + chr3_2:90239813-90239832 Msa0436620:intron 40.0%
! TGGTCTGGAATCACACATTT+GGG - chr3_2:90239889-90239908 None:intergenic 40.0%
! TTGGTCTGGAATCACACATT+TGG - chr3_2:90239890-90239909 None:intergenic 40.0%
AGCAGAAAAAGAGGAATCAG+TGG - chr3_2:90240068-90240087 None:intergenic 40.0%
TGAGAAGGTTTACGAGAAAG+TGG + chr3_2:90240127-90240146 Msa0436620:CDS 40.0%
!! AGTTGTACTGATTTGGAGAC+TGG + chr3_2:90240356-90240375 Msa0436620:CDS 40.0%
CACAGAAGGTTAGATATGTC+TGG - chr3_2:90240955-90240974 None:intergenic 40.0%
TGCATCACCATTCCTATGAT+TGG - chr3_2:90241002-90241021 None:intergenic 40.0%
AAAAGGATGTCTGGTTGCAT+TGG - chr3_2:90241073-90241092 None:intergenic 40.0%
TATATTGTAGGCGCGCATTT+GGG + chr3_2:90241197-90241216 Msa0436620:intron 40.0%
AGGACAATCGTCTTCGTATA+TGG + chr3_2:90241331-90241350 Msa0436620:CDS 40.0%
GGACAATCGTCTTCGTATAT+GGG + chr3_2:90241332-90241351 Msa0436620:CDS 40.0%
!! CAGCTTTGAAGGGTGTTAAA+TGG - chr3_2:90241422-90241441 None:intergenic 40.0%
TAACACCCTTCAAAGCTGAA+TGG + chr3_2:90241424-90241443 Msa0436620:CDS 40.0%
AACACCCTTCAAAGCTGAAT+GGG + chr3_2:90241425-90241444 Msa0436620:CDS 40.0%
TCATTCATACCTAGAACTCC+CGG - chr3_2:90241736-90241755 None:intergenic 40.0%
TCTAGTACTCACTCTCTTGT+TGG + chr3_2:90241903-90241922 Msa0436620:intron 40.0%
ATTGAACCTACACAAAGTGG+TGG + chr3_2:90241954-90241973 Msa0436620:intron 40.0%
TTGAACCTACACAAAGTGGT+GGG + chr3_2:90241955-90241974 Msa0436620:intron 40.0%
TCTGTTCATTTGGAAGCCAA+AGG + chr3_2:90242352-90242371 Msa0436620:CDS 40.0%
GCCAAAGGAAAAATCTGAGA+CGG + chr3_2:90242367-90242386 Msa0436620:CDS 40.0%
! ACCGTCTCAGATTTTTCCTT+TGG - chr3_2:90242371-90242390 None:intergenic 40.0%
GAAGGACGAAAGCAAAATTG+TGG + chr3_2:90242397-90242416 Msa0436620:CDS 40.0%
AAGAAACGTGGTAAGAGGAA+AGG + chr3_2:90242437-90242456 Msa0436620:CDS 40.0%
ATCGATGAATCCGATGATGA+TGG + chr3_2:90242467-90242486 Msa0436620:CDS 40.0%
! CATTCAGTCTGCTTGGATTT+TGG - chr3_2:90242515-90242534 None:intergenic 40.0%
CAAAATCCAAGCAGACTGAA+TGG + chr3_2:90242513-90242532 Msa0436620:CDS 40.0%
CAATTTCCATTCAGTCTGCT+TGG - chr3_2:90242522-90242541 None:intergenic 40.0%
! GGAGCTTGGTAACCTATAAA+TGG - chr3_2:90242629-90242648 None:intergenic 40.0%
! TATGCATGCGACTTCTCTTT+TGG + chr3_2:90242690-90242709 Msa0436620:three_prime_UTR 40.0%
! ATGCATGCGACTTCTCTTTT+GGG + chr3_2:90242691-90242710 Msa0436620:three_prime_UTR 40.0%
GTGTTGGGAGTTGAACAGAA+AGG - chr3_2:90237632-90237651 None:intergenic 45.0%
ACCGCAAAAAGGATCGCTTT+CGG + chr3_2:90237729-90237748 Msa0436620:five_prime_UTR 45.0%
! ACCGAAAGCGATCCTTTTTG+CGG - chr3_2:90237733-90237752 None:intergenic 45.0%
TCGGTTCTTTAACATGGCAC+CGG + chr3_2:90237753-90237772 Msa0436620:exon 45.0%
!! AGAAGAAGAAGAAGCACTCG+AGG + chr3_2:90237849-90237868 Msa0436620:CDS 45.0%
TTACAGGTGTGTAAGAAGCC+TGG + chr3_2:90238098-90238117 Msa0436620:intron 45.0%
TAAGAAGCCTGGTCATGAAG+CGG + chr3_2:90238109-90238128 Msa0436620:CDS 45.0%
TTAAAACCCGCTTCATGACC+AGG - chr3_2:90238119-90238138 None:intergenic 45.0%
!! TGGTCATGAAGCGGGTTTTA+AGG + chr3_2:90238118-90238137 Msa0436620:CDS 45.0%
!! GGTCATGAAGCGGGTTTTAA+GGG + chr3_2:90238119-90238138 Msa0436620:CDS 45.0%
! GTCGACTCACAGATTGAAAG+CGG - chr3_2:90238562-90238581 None:intergenic 45.0%
! CCGGTCTAGAATTTGGATGA+AGG + chr3_2:90238617-90238636 Msa0436620:intron 45.0%
GTTTCTGTTAGCCAATAGCG+GGG + chr3_2:90238774-90238793 Msa0436620:intron 45.0%
CCGATGTGGACAATTCAAAG+TGG - chr3_2:90239261-90239280 None:intergenic 45.0%
!! TACTGAGCATGGTGTTGTTC+CGG + chr3_2:90239286-90239305 Msa0436620:CDS 45.0%
! GGTTTAGAGGTTTTTCTGCG+GGG - chr3_2:90239314-90239333 None:intergenic 45.0%
TAGGAATGGCATGTCTTAGC+TGG - chr3_2:90239358-90239377 None:intergenic 45.0%
GCTAAGACATGCCATTCCTA+CGG + chr3_2:90239358-90239377 Msa0436620:CDS 45.0%
ACTTAGGCTTACCGTAGGAA+TGG - chr3_2:90239372-90239391 None:intergenic 45.0%
GAATGACTTAGGCTTACCGT+AGG - chr3_2:90239377-90239396 None:intergenic 45.0%
GTCTCCTATGATCAATAGCC+TGG - chr3_2:90239820-90239839 None:intergenic 45.0%
TGATAACAGCGCAACTCACT+TGG - chr3_2:90239909-90239928 None:intergenic 45.0%
TAGTAGGCGGATAACAAGCT+TGG + chr3_2:90239936-90239955 Msa0436620:CDS 45.0%
GGATGTTATTCTTCGTAGGG+TGG - chr3_2:90239966-90239985 None:intergenic 45.0%
TAACCTTATCTCCCGACAAC+AGG - chr3_2:90239987-90240006 None:intergenic 45.0%
AGAAAGGACAACTTGGAGTC+TGG + chr3_2:90240099-90240118 Msa0436620:intron 45.0%
GAAAGGACAACTTGGAGTCT+GGG + chr3_2:90240100-90240119 Msa0436620:intron 45.0%
!! TGGAGTCTGGGATTTTGAGA+AGG + chr3_2:90240112-90240131 Msa0436620:CDS 45.0%
TATGGTCTATTCCGCATCCT+CGG + chr3_2:90240322-90240341 Msa0436620:CDS 45.0%
ACAACTAATGGTTCCATCCG+AGG - chr3_2:90240342-90240361 None:intergenic 45.0%
! CCATCAGGATTCAGGTTCAT+CGG - chr3_2:90240395-90240414 None:intergenic 45.0%
TGAACCTGAATCCTGATGGA+TGG + chr3_2:90240396-90240415 Msa0436620:CDS 45.0%
GACATGCGGAGACAGTAAAA+CGG - chr3_2:90240696-90240715 None:intergenic 45.0%
GACCCTGTAAATGACACAGA+AGG - chr3_2:90240969-90240988 None:intergenic 45.0%
TCATTTACAGGGTCGACATG+CGG + chr3_2:90240975-90240994 Msa0436620:intron 45.0%
ATGCGGTCCAATCATAGGAA+TGG + chr3_2:90240992-90241011 Msa0436620:CDS 45.0%
CTGGTTGCATTGGATTGCAA+TGG - chr3_2:90241063-90241082 None:intergenic 45.0%
CCACAAGTCAAAAGGATGTC+TGG - chr3_2:90241082-90241101 None:intergenic 45.0%
!!! CCAGACATCCTTTTGACTTG+TGG + chr3_2:90241079-90241098 Msa0436620:CDS 45.0%
CTATATTGTAGGCGCGCATT+TGG + chr3_2:90241196-90241215 Msa0436620:intron 45.0%
GATATGCGTCACTTAGAAGC+TGG + chr3_2:90241219-90241238 Msa0436620:CDS 45.0%
TAACAACACGCTTGTGCTCA+AGG - chr3_2:90241260-90241279 None:intergenic 45.0%
CTATGCACAATTTCTCGGCT+GGG - chr3_2:90241384-90241403 None:intergenic 45.0%
ACTATGCACAATTTCTCGGC+TGG - chr3_2:90241385-90241404 None:intergenic 45.0%
!! GGATCCCATTCAGCTTTGAA+GGG - chr3_2:90241432-90241451 None:intergenic 45.0%
! TGGATCCCATTCAGCTTTGA+AGG - chr3_2:90241433-90241452 None:intergenic 45.0%
CAAAGCTGAATGGGATCCAA+AGG + chr3_2:90241434-90241453 Msa0436620:CDS 45.0%
AGATACAAGTACAGGGCAGT+TGG + chr3_2:90241632-90241651 Msa0436620:CDS 45.0%
GACTGATGGTTGTGATGTTC+GGG - chr3_2:90241674-90241693 None:intergenic 45.0%
GGACTGATGGTTGTGATGTT+CGG - chr3_2:90241675-90241694 None:intergenic 45.0%
GAACATCACAACCATCAGTC+CGG + chr3_2:90241674-90241693 Msa0436620:CDS 45.0%
AAGCTTATTCACCGGACTGA+TGG - chr3_2:90241688-90241707 None:intergenic 45.0%
CGTGGATGAAGCTTATTCAC+CGG - chr3_2:90241696-90241715 None:intergenic 45.0%
TATGTCCCACCACTTTGTGT+AGG - chr3_2:90241963-90241982 None:intergenic 45.0%
GGAAAAGCTGAGAAGAAACG+TGG + chr3_2:90242425-90242444 Msa0436620:CDS 45.0%
CTGAGAAGAAACGTGGTAAG+AGG + chr3_2:90242432-90242451 Msa0436620:CDS 45.0%
!!! GGATTTTGGCTTCTTGAGCT+TGG - chr3_2:90242501-90242520 None:intergenic 45.0%
! TGCATGCGACTTCTCTTTTG+GGG + chr3_2:90242692-90242711 Msa0436620:three_prime_UTR 45.0%
!! ATAATTTAAGAAAAAATATT+TGG - chr3_2:90240438-90240457 None:intergenic 5.0%
! TTTTGCGGTGACGATGGAAG+CGG - chr3_2:90237718-90237737 None:intergenic 50.0%
CTTCCATCGTCACCGCAAAA+AGG + chr3_2:90237718-90237737 Msa0436620:five_prime_UTR 50.0%
! GATCCTTTTTGCGGTGACGA+TGG - chr3_2:90237724-90237743 None:intergenic 50.0%
!! AGAAGAAGAAGCACTCGAGG+AGG + chr3_2:90237852-90237871 Msa0436620:CDS 50.0%
AAGAAGCCTGGTCATGAAGC+GGG + chr3_2:90238110-90238129 Msa0436620:CDS 50.0%
CAATCTGTGAGTCGACTGTG+TGG + chr3_2:90238566-90238585 Msa0436620:intron 50.0%
TGGATGAAGGAGACTAGGAG+AGG + chr3_2:90238630-90238649 Msa0436620:intron 50.0%
GGATGAAGGAGACTAGGAGA+GGG + chr3_2:90238631-90238650 Msa0436620:intron 50.0%
! GCGGAAAACTAGAGGCATAG+CGG - chr3_2:90239017-90239036 None:intergenic 50.0%
CATCCTGTTGTCGGGAGATA+AGG + chr3_2:90239981-90240000 Msa0436620:CDS 50.0%
AATGGTTCCATCCGAGGATG+CGG - chr3_2:90240336-90240355 None:intergenic 50.0%
! AGGATTCAGGTTCATCGGAG+AGG - chr3_2:90240390-90240409 None:intergenic 50.0%
CCGATGAACCTGAATCCTGA+TGG + chr3_2:90240392-90240411 Msa0436620:CDS 50.0%
CATGCCATCCATCAGGATTC+AGG - chr3_2:90240403-90240422 None:intergenic 50.0%
TTTACTAGGGGCCAAACACC+TGG + chr3_2:90240567-90240586 Msa0436620:intron 50.0%
! TGAGAAAGGTCTTGTGCTCG+TGG + chr3_2:90240619-90240638 Msa0436620:CDS 50.0%
TCGACATGCGGTCCAATCAT+AGG + chr3_2:90240987-90241006 Msa0436620:CDS 50.0%
CTTGTGCTCAAGGCTACAGA+GGG - chr3_2:90241250-90241269 None:intergenic 50.0%
!! GCAGTTGGTAGCAGAAGTCA+TGG + chr3_2:90241647-90241666 Msa0436620:CDS 50.0%
TCATCCACGCGATGATATCC+TGG + chr3_2:90241707-90241726 Msa0436620:CDS 50.0%
! GGAAAAATCTGAGACGGTCG+AGG + chr3_2:90242373-90242392 Msa0436620:CDS 50.0%
ATTGTCTCGCTGCTCGACAA+AGG + chr3_2:90242538-90242557 Msa0436620:CDS 50.0%
TTTGCGGTGACGATGGAAGC+GGG - chr3_2:90237717-90237736 None:intergenic 55.0%
AGGAGACTAGGAGAGGGTTG+TGG + chr3_2:90238637-90238656 Msa0436620:intron 55.0%
TGCTCAGTAGTGACCCGATG+TGG - chr3_2:90239275-90239294 None:intergenic 55.0%
CATCGGGTCACTACTGAGCA+TGG + chr3_2:90239275-90239294 Msa0436620:CDS 55.0%
ACAGCGCAACTCACTTGGTC+TGG - chr3_2:90239904-90239923 None:intergenic 55.0%
GTCTATTCCGCATCCTCGGA+TGG + chr3_2:90240326-90240345 Msa0436620:CDS 55.0%
TGACCACGCGAGTCTACTCA+AGG + chr3_2:90240484-90240503 Msa0436620:intron 55.0%
TGACCTTGAGTAGACTCGCG+TGG - chr3_2:90240490-90240509 None:intergenic 55.0%
GTGCTCGTGGCCGATAACTT+TGG + chr3_2:90240632-90240651 Msa0436620:CDS 55.0%
GCTTGTGCTCAAGGCTACAG+AGG - chr3_2:90241251-90241270 None:intergenic 55.0%
GTTGCCAGGATATCATCGCG+TGG - chr3_2:90241714-90241733 None:intergenic 55.0%
CGCGATGATATCCTGGCAAC+CGG + chr3_2:90241714-90241733 Msa0436620:CDS 55.0%
GCGATGATATCCTGGCAACC+GGG + chr3_2:90241715-90241734 Msa0436620:CDS 55.0%
! ATCTGAGACGGTCGAGGAGA+AGG + chr3_2:90242379-90242398 Msa0436620:CDS 55.0%
! GAGGTTTTTCTGCGGGGTGC+CGG - chr3_2:90239308-90239327 None:intergenic 60.0%
TCCTGGCAACCGGGAGTTCT+AGG + chr3_2:90241724-90241743 Msa0436620:CDS 60.0%
ACCTAGAACTCCCGGTTGCC+AGG - chr3_2:90241728-90241747 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 90237563 90242936 90237563 ID=Msa0436620;Name=Msa0436620
chr3_2 mRNA 90237563 90242936 90237563 ID=Msa0436620-mRNA-1;Parent=Msa0436620;Name=Msa0436620-mRNA-1;_AED=0.08;_eAED=0.08;_QI=203|1|1|1|1|1|11|365|558
chr3_2 exon 90237563 90237999 90237563 ID=Msa0436620-mRNA-1:exon:26796;Parent=Msa0436620-mRNA-1
chr3_2 exon 90238104 90238194 90238104 ID=Msa0436620-mRNA-1:exon:26797;Parent=Msa0436620-mRNA-1
chr3_2 exon 90239252 90239379 90239252 ID=Msa0436620-mRNA-1:exon:26798;Parent=Msa0436620-mRNA-1
chr3_2 exon 90239880 90240002 90239880 ID=Msa0436620-mRNA-1:exon:26799;Parent=Msa0436620-mRNA-1
chr3_2 exon 90240101 90240189 90240101 ID=Msa0436620-mRNA-1:exon:26800;Parent=Msa0436620-mRNA-1
chr3_2 exon 90240301 90240421 90240301 ID=Msa0436620-mRNA-1:exon:26801;Parent=Msa0436620-mRNA-1
chr3_2 exon 90240575 90240666 90240575 ID=Msa0436620-mRNA-1:exon:26802;Parent=Msa0436620-mRNA-1
chr3_2 exon 90240985 90241114 90240985 ID=Msa0436620-mRNA-1:exon:26803;Parent=Msa0436620-mRNA-1
chr3_2 exon 90241207 90241455 90241207 ID=Msa0436620-mRNA-1:exon:26804;Parent=Msa0436620-mRNA-1
chr3_2 exon 90241549 90241745 90241549 ID=Msa0436620-mRNA-1:exon:26805;Parent=Msa0436620-mRNA-1
chr3_2 exon 90242349 90242936 90242349 ID=Msa0436620-mRNA-1:exon:26806;Parent=Msa0436620-mRNA-1
chr3_2 five_prime_UTR 90237563 90237765 90237563 ID=Msa0436620-mRNA-1:five_prime_utr;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90237766 90237999 90237766 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90238104 90238194 90238104 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90239252 90239379 90239252 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90239880 90240002 90239880 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90240101 90240189 90240101 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90240301 90240421 90240301 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90240575 90240666 90240575 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90240985 90241114 90240985 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90241207 90241455 90241207 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90241549 90241745 90241549 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 CDS 90242349 90242571 90242349 ID=Msa0436620-mRNA-1:cds;Parent=Msa0436620-mRNA-1
chr3_2 three_prime_UTR 90242572 90242936 90242572 ID=Msa0436620-mRNA-1:three_prime_utr;Parent=Msa0436620-mRNA-1
Gene Sequence

>Msa0436620

ATGGCACCGGTTACTCGTAGAACCTCTTTCCCCAAAGTTCTCATTGAAAGAGACTCTGACTCTGAACAGAGTTCTTCTGATGAAGAAGAAGAAGAAGCACTCGAGGAGGAAGAAGAAGAAGAAGAAGAAAATGGGGTTGCTGAAAATGAAAAGATTGAGAAACTGGAAGTGGGTTTTGATGCTAATAGGAAAGGGAAAAAACCCATTACGCTAACTCTCAGAAAAGTTTGCAAGGTGTGTAAGAAGCCTGGTCATGAAGCGGGTTTTAAGGGTGCTACTTACATTGATTGCCCTATGAAACCTTGTTTTCTTTGTAAAACTCCTGGACATACCACTTTGAATTGTCCACATCGGGTCACTACTGAGCATGGTGTTGTTCCGGCACCCCGCAGAAAAACCTCTAAACCTTTGGAGTATGTGTTTGAACGCCAGCTAAGACATGCCATTCCTACGATCAAGCCCAAATGTGTGATTCCAGACCAAGTGAGTTGCGCTGTTATCAGATATCATAGTAGGCGGATAACAAGCTTGGAGTTCCACCCTACGAAGAATAACATCCTGTTGTCGGGAGATAAGAAAGGACAACTTGGAGTCTGGGATTTTGAGAAGGTTTACGAGAAAGTGGTCTATGAGAACATACACTCTTGTATACTGAACAACATGAAGTTTAATCCTACAAATGATTGTATGGTCTATTCCGCATCCTCGGATGGAACCATTAGTTGTACTGATTTGGAGACTGGAATATCATCCTCTCCGATGAACCTGAATCCTGATGGATGGCATGGGCCAAACACCTGGAAAATGCTTTATGGTATGGATATTCACTATGAGAAAGGTCTTGTGCTCGTGGCCGATAACTTTGGCTTTCTTCACTTGGTCGACATGCGGTCCAATCATAGGAATGGTGATGCAGTTTTGATCCATAAAAAAGGTAGCAAAGTTACTGGTATCCATTGCAATCCAATGCAACCAGACATCCTTTTGACTTGTGGAAATGATCATTATGCGCGCATTTGGGATATGCGTCACTTAGAAGCTGGATCATCCCTCTGTAGCCTTGAGCACAAGCGTGTTGTTAACTCTGCATATTTCTCTCCAATAACTGGAAACAAAATTCTTACTACGTCACAGGACAATCGTCTTCGTATATGGGATTCTATCTTTGGTAATATGGCATCTCCCAGCCGAGAAATTGTGCATAGTCATGATTTCAATCGCCATTTAACACCCTTCAAAGCTGAATGGGATCCAAAGGATCCATTAGAGTCACTCGCTGTTGTTGGCCGCTATATAAGTGAAAATTTTAATGGCACAGCCCTGCATCCTATTGATTTTATAGATACAAGTACAGGGCAGTTGGTAGCAGAAGTCATGGACCCGAACATCACAACCATCAGTCCGGTGAATAAGCTTCATCCACGCGATGATATCCTGGCAACCGGGAGTTCTAGGTCTCTGTTCATTTGGAAGCCAAAGGAAAAATCTGAGACGGTCGAGGAGAAGGACGAAAGCAAAATTGTGGTTTGTGGAAAAGCTGAGAAGAAACGTGGTAAGAGGAAAGGTGATAACATCGATGAATCCGATGATGATGGATTCATTTCCAAGCTCAAGAAGCCAAAATCCAAGCAGACTGAATGGAAATTGTCTCGCTGCTCGACAAAGGATAATCGCTAA

Protein sequence

>Msa0436620

MAPVTRRTSFPKVLIERDSDSEQSSSDEEEEEALEEEEEEEEENGVAENEKIEKLEVGFDANRKGKKPITLTLRKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKTPGHTTLNCPHRVTTEHGVVPAPRRKTSKPLEYVFERQLRHAIPTIKPKCVIPDQVSCAVIRYHSRRITSLEFHPTKNNILLSGDKKGQLGVWDFEKVYEKVVYENIHSCILNNMKFNPTNDCMVYSASSDGTISCTDLETGISSSPMNLNPDGWHGPNTWKMLYGMDIHYEKGLVLVADNFGFLHLVDMRSNHRNGDAVLIHKKGSKVTGIHCNPMQPDILLTCGNDHYARIWDMRHLEAGSSLCSLEHKRVVNSAYFSPITGNKILTTSQDNRLRIWDSIFGNMASPSREIVHSHDFNRHLTPFKAEWDPKDPLESLAVVGRYISENFNGTALHPIDFIDTSTGQLVAEVMDPNITTISPVNKLHPRDDILATGSSRSLFIWKPKEKSETVEEKDESKIVVCGKAEKKRGKRKGDNIDESDDDGFISKLKKPKSKQTEWKLSRCSTKDNR*