AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0775430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0775430 MtrunA17_Chr5g0429851 93.548 558 35 1 1 557 73 630 0.0 1016
Msa0775430 MtrunA17_Chr4g0065421 25.246 305 193 13 165 465 161 434 2.26e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0775430 AT5G58760.1 70.784 510 139 4 5 509 6 510 0.0 746
Msa0775430 AT5G58760.2 74.515 412 105 0 98 509 1 412 0.0 670
Msa0775430 AT1G80710.1 25.000 344 206 14 165 492 209 516 1.16e-16 83.6

Find 156 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGTCTGCTTGGATTT+TGG 0.092885 5_2:-52386865 None:intergenic
CCAAACTGCTAACCATTTAT+AGG 0.178321 5_2:+52386967 Msa0775430:three_prime_UTR
CTTCCATCATCTCCGCTAAA+AGG 0.184521 5_2:+52382070 Msa0775430:five_prime_UTR
TCTTCTGTACAGAGAAAATT+TGG 0.200589 5_2:+52387204 Msa0775430:three_prime_UTR
CGTATATGGGATTCTATCTT+TGG 0.201004 5_2:+52385699 Msa0775430:CDS
GGATTCTATCTTTGGTAATA+TGG 0.203494 5_2:+52385707 Msa0775430:CDS
AGGACAATCGTCTTCGTATA+TGG 0.237095 5_2:+52385685 Msa0775430:CDS
AACACCTGGAAAATGCTTTA+TGG 0.242204 5_2:+52384935 Msa0775430:CDS
TATGCATGCGACTTCTCTTT+TGG 0.245861 5_2:+52387043 Msa0775430:three_prime_UTR
CAAAGAAAACAAGGTTTCAT+AGG 0.255454 5_2:-52382507 None:intergenic
CCTATAAATGGTTAGCAGTT+TGG 0.260566 5_2:-52386967 None:intergenic
CATGCCATCCATCAGGATTC+AGG 0.269004 5_2:-52384754 None:intergenic
AACCATTAGTTGTACTGATT+TGG 0.271261 5_2:+52384703 Msa0775430:CDS
CAGCTTTGAAGGGTGTTAAA+TGG 0.287007 5_2:-52385773 None:intergenic
CACATACTCCAAAGGTTTAG+AGG 0.287821 5_2:-52383696 None:intergenic
TCCTGGCAACCGGGAGTTCT+AGG 0.311872 5_2:+52386078 Msa0775430:CDS
CTATATTGTAGGCGCGCATT+TGG 0.318325 5_2:+52385550 Msa0775430:intron
GCATATTTCTCTCCAATAAC+TGG 0.326448 5_2:+52385639 Msa0775430:CDS
TCTCTTTCAATGAGAACTTT+GGG 0.330765 5_2:-52382148 None:intergenic
ATTTAAAAGTGACTATCTAT+TGG 0.343886 5_2:-52387267 None:intergenic
AAATGAAAAGATTGAGAAAC+TGG 0.345976 5_2:+52382258 Msa0775430:CDS
TTGGTCTGGAATCACACATT+TGG 0.346565 5_2:-52384241 None:intergenic
TGGATCCCATTCAGCTTTGA+AGG 0.350384 5_2:-52385784 None:intergenic
CATGACTATGCACAATTTCT+CGG 0.350606 5_2:-52385740 None:intergenic
GTGAAGAAAGCCAAAGTTAT+CGG 0.353261 5_2:-52384996 None:intergenic
AGAAAGGACAACTTGGAGTC+TGG 0.357633 5_2:+52384453 Msa0775430:intron
GGAGCTTGGTAACCTATAAA+TGG 0.367149 5_2:-52386979 None:intergenic
GGACTGATGGTTGTGATGTT+CGG 0.374930 5_2:-52386026 None:intergenic
TTTCTGAGAGTTAGCGTAAT+GGG 0.378118 5_2:-52382316 None:intergenic
GTCTCTTTCAATGAGAACTT+TGG 0.378205 5_2:-52382149 None:intergenic
TTAGAGTCACTCGCTGTTGT+TGG 0.388644 5_2:+52385909 Msa0775430:CDS
TGGTCTGGAATCACACATTT+GGG 0.388716 5_2:-52384240 None:intergenic
TCCGCTAAAAGGGTCGCTTT+CGG 0.395356 5_2:+52382081 Msa0775430:five_prime_UTR
CGCGATGATATCCTGGCAAC+CGG 0.395646 5_2:+52386068 Msa0775430:CDS
TACTGAGCATGGTGTTGTTC+CGG 0.398936 5_2:+52383658 Msa0775430:CDS
CTTGTATCTATAAAATCAAT+AGG 0.399051 5_2:-52385972 None:intergenic
TAATCCTACAAATGATTGTA+TGG 0.401174 5_2:+52384658 Msa0775430:CDS
CAATTTCCATTCAGTCTGCT+TGG 0.404544 5_2:-52386872 None:intergenic
TAGGTGACTTCTCTTTGTAT+AGG 0.406531 5_2:+52387101 Msa0775430:three_prime_UTR
GACTGATGGTTGTGATGTTC+GGG 0.410135 5_2:-52386025 None:intergenic
TGCATCACCATTCCTATGAT+TGG 0.418131 5_2:-52385353 None:intergenic
CCACAAGTCAAAAGGATGTC+TGG 0.420331 5_2:-52385433 None:intergenic
CATCCTGTTGTCGGGAGATA+AGG 0.421944 5_2:+52384335 Msa0775430:CDS
CTCCAAATCAGTACAACTAA+TGG 0.423674 5_2:-52384705 None:intergenic
TATATTGTAGGCGCGCATTT+GGG 0.425675 5_2:+52385551 Msa0775430:intron
ACCTAGAACTCCCGGTTGCC+AGG 0.426830 5_2:-52386079 None:intergenic
TCGACATGCGGTCCAATCAT+AGG 0.436742 5_2:+52385341 Msa0775430:CDS
CACTTTGAATTGTCCACATC+GGG 0.441106 5_2:+52383631 Msa0775430:CDS
TGGTCATGAAGCGGGTTTCA+AGG 0.442646 5_2:+52382464 Msa0775430:CDS
AGTTGTACTGATTTGGAGAC+TGG 0.447052 5_2:+52384710 Msa0775430:CDS
GAATACAAAAGCGTGAAGAT+AGG 0.449811 5_2:-52387152 None:intergenic
CTGGAAAATGCTTTATGGTA+TGG 0.452127 5_2:+52384940 Msa0775430:CDS
TAGACCATACAATCATTTGT+AGG 0.454241 5_2:-52384662 None:intergenic
TAAAAGGGTCGCTTTCGGTT+CGG 0.454313 5_2:+52382086 Msa0775430:five_prime_UTR
CTGTACAGAGAAAATTTGGT+TGG 0.456886 5_2:+52387208 Msa0775430:three_prime_UTR
ATCTGAGACGGTCGAGGAGA+AGG 0.459772 5_2:+52386732 Msa0775430:CDS
GGACAATCGTCTTCGTATAT+GGG 0.460807 5_2:+52385686 Msa0775430:CDS
ACAGCGCAACTCACTTGGTC+TGG 0.463787 5_2:-52384255 None:intergenic
AATGAGAACTTTGGGGAAAG+AGG 0.464363 5_2:-52382140 None:intergenic
CTATCTATTGGCAAATCTGT+TGG 0.470268 5_2:-52387255 None:intergenic
TAACACCCTTCAAAGCTGAA+TGG 0.473837 5_2:+52385778 Msa0775430:CDS
AAAAGGATGTCTGGTTGCAT+TGG 0.474611 5_2:-52385424 None:intergenic
TAGGAATGGCATGTCTTAGC+TGG 0.475369 5_2:-52383727 None:intergenic
TATCTATTGGCAAATCTGTT+GGG 0.478194 5_2:-52387254 None:intergenic
GTGCTCGTGGCCGATAACTT+TGG 0.480261 5_2:+52384986 Msa0775430:CDS
TAACCTTATCTCCCGACAAC+AGG 0.480848 5_2:-52384338 None:intergenic
CTATAAAATCAATAGGATGC+AGG 0.481005 5_2:-52385965 None:intergenic
TGTACAGAGAAAATTTGGTT+GGG 0.481798 5_2:+52387209 Msa0775430:three_prime_UTR
AATATTACATGCCATCCATC+AGG 0.482629 5_2:-52384761 None:intergenic
TCATCCACGCGATGATATCC+TGG 0.483670 5_2:+52386061 Msa0775430:CDS
AAAGAGGTTCTACGAGTAAC+CGG 0.483672 5_2:-52382124 None:intergenic
GATCATTTCCACAAGTCAAA+AGG 0.485595 5_2:-52385441 None:intergenic
GAAAGGACAACTTGGAGTCT+GGG 0.485905 5_2:+52384454 Msa0775430:intron
ACAACAGCGAGTGACTCTAA+TGG 0.486270 5_2:-52385906 None:intergenic
AACACCCTTCAAAGCTGAAT+GGG 0.487045 5_2:+52385779 Msa0775430:CDS
AAGAATAACATCCTGTTGTC+GGG 0.488018 5_2:+52384327 Msa0775430:CDS
TTGAAACCCGCTTCATGACC+AGG 0.490682 5_2:-52382462 None:intergenic
TTTACTAGGGGCCAAACACC+TGG 0.499445 5_2:+52384921 Msa0775430:intron
ACTATGCACAATTTCTCGGC+TGG 0.500089 5_2:-52385736 None:intergenic
AAAGAAAACAAGGTTTCATA+GGG 0.501938 5_2:-52382506 None:intergenic
TATAAAATCAATAGGATGCA+GGG 0.504604 5_2:-52385964 None:intergenic
GTATCATATGCATATTAGAT+TGG 0.505097 5_2:+52387078 Msa0775430:three_prime_UTR
ATCGATGAATCCGATGATGA+TGG 0.505501 5_2:+52386820 Msa0775430:CDS
GAAGAATAACATCCTGTTGT+CGG 0.505802 5_2:+52384326 Msa0775430:CDS
TTCGGTTCGGTTCTTTAACA+TGG 0.507966 5_2:+52382099 Msa0775430:exon
CATATGCATATTAGATTGGT+AGG 0.510662 5_2:+52387082 Msa0775430:three_prime_UTR
CTGAGAAGAAACGTGGTAAG+AGG 0.511583 5_2:+52386785 Msa0775430:CDS
TTCCATCATCTCCGCTAAAA+GGG 0.514932 5_2:+52382071 Msa0775430:five_prime_UTR
TCATAAAAGAAAGGACAACT+TGG 0.517742 5_2:+52384446 Msa0775430:intron
GGATCCCATTCAGCTTTGAA+GGG 0.518856 5_2:-52385783 None:intergenic
GAAAGCAAAATTGTGGTTTG+TGG 0.518880 5_2:+52386757 Msa0775430:CDS
GTCTATTCCGCATCCTCGGA+TGG 0.519643 5_2:+52384680 Msa0775430:CDS
TAGCAGGCGGATAACAAGCT+TGG 0.520126 5_2:+52384290 Msa0775430:CDS
TAACAACACGCTTGTGCTCA+AGG 0.528107 5_2:-52385611 None:intergenic
AAGCTTATTCACCGGACTGA+TGG 0.528676 5_2:-52386039 None:intergenic
TGATAACAGCGCAACTCACT+TGG 0.530316 5_2:-52384260 None:intergenic
AAAGATTGAGAAACTGGAAG+TGG 0.531341 5_2:+52382264 Msa0775430:CDS
ATGGATATTCACTATGAGAA+AGG 0.532012 5_2:+52384959 Msa0775430:CDS
CAAAATCCAAGCAGACTGAA+TGG 0.532156 5_2:+52386866 Msa0775430:CDS
CTCTTTCAATGAGAACTTTG+GGG 0.535912 5_2:-52382147 None:intergenic
TGAGAAGGTTTACGAGAAAG+TGG 0.536172 5_2:+52384481 Msa0775430:CDS
CTATGCACAATTTCTCGGCT+GGG 0.540395 5_2:-52385735 None:intergenic
CCATCAGGATTCAGGTTCAT+CGG 0.543513 5_2:-52384746 None:intergenic
AAGAAGCCTGGTCATGAAGC+GGG 0.545678 5_2:+52382456 Msa0775430:CDS
AATGGTTCCATCCGAGGATG+CGG 0.547198 5_2:-52384687 None:intergenic
CAAAATTCTTACTACGTCAC+AGG 0.548895 5_2:+52385665 Msa0775430:CDS
AACTCTCAGAAAAGTTTGCA+AGG 0.549049 5_2:+52382327 Msa0775430:CDS
GGTCATGAAGCGGGTTTCAA+GGG 0.549246 5_2:+52382465 Msa0775430:CDS
GATATGCGTCACTTAGAAGC+TGG 0.550288 5_2:+52385573 Msa0775430:CDS
AAGATTGAGAAACTGGAAGT+GGG 0.551746 5_2:+52382265 Msa0775430:CDS
TATGGTCTATTCCGCATCCT+CGG 0.554175 5_2:+52384676 Msa0775430:CDS
CTGTTATCAGATATCATAGC+AGG 0.555229 5_2:+52384274 Msa0775430:CDS
CCGATGAACCTGAATCCTGA+TGG 0.557467 5_2:+52384746 Msa0775430:CDS
AAGAAACGTGGTAAGAGGAA+AGG 0.563572 5_2:+52386790 Msa0775430:CDS
TTATAGGTGTGTAAGAAGCC+TGG 0.566694 5_2:+52382444 Msa0775430:intron
ACAGGATGTTATTCTTCGTA+GGG 0.566721 5_2:-52384320 None:intergenic
TTTAGCGGAGATGATGGAAG+CGG 0.572848 5_2:-52382067 None:intergenic
GCAGTTGGTAGCAGAAGTCA+TGG 0.572898 5_2:+52386001 Msa0775430:CDS
TCATTCATACCTAGAACTCC+CGG 0.574789 5_2:-52386087 None:intergenic
AGATACAAGTACAGGGCAGT+TGG 0.578810 5_2:+52385986 Msa0775430:CDS
TGAGAAAGGTCTTGTGCTCG+TGG 0.581673 5_2:+52384973 Msa0775430:CDS
GGAAATGAATCCATCATCAT+CGG 0.582701 5_2:-52386830 None:intergenic
TTAGCGGAGATGATGGAAGC+GGG 0.586776 5_2:-52382066 None:intergenic
TCTGTTCATTTGGAAGCCAA+AGG 0.589673 5_2:+52386705 Msa0775430:CDS
TCGGTTCTTTAACATGGCAC+CGG 0.592131 5_2:+52382105 Msa0775430:exon
CAAAGCTGAATGGGATCCAA+AGG 0.592946 5_2:+52385788 Msa0775430:CDS
GAACATCACAACCATCAGTC+CGG 0.595957 5_2:+52386028 Msa0775430:CDS
ACTTAGGCTTACCGTAGGAA+TGG 0.598093 5_2:-52383741 None:intergenic
ATGCGGTCCAATCATAGGAA+TGG 0.598179 5_2:+52385346 Msa0775430:CDS
GGATGTTATTCTTCGTAGGG+TGG 0.599457 5_2:-52384317 None:intergenic
ATTGTCTCGCTGCTCGACAA+AGG 0.600055 5_2:+52386891 Msa0775430:CDS
CTGGTTGCATTGGATTGCAA+TGG 0.602433 5_2:-52385414 None:intergenic
CGTGGATGAAGCTTATTCAC+CGG 0.603561 5_2:-52386047 None:intergenic
ACAACTAATGGTTCCATCCG+AGG 0.607521 5_2:-52384693 None:intergenic
TAAGAAGCCTGGTCATGAAG+CGG 0.617194 5_2:+52382455 Msa0775430:CDS
CATCGGGTCACTACTGAGCA+TGG 0.620894 5_2:+52383647 Msa0775430:CDS
CGTTCAAACACATACTCCAA+AGG 0.622066 5_2:-52383704 None:intergenic
GCGATGATATCCTGGCAACC+GGG 0.623661 5_2:+52386069 Msa0775430:CDS
AACAGGATGTTATTCTTCGT+AGG 0.624223 5_2:-52384321 None:intergenic
GAAGGACGAAAGCAAAATTG+TGG 0.625614 5_2:+52386750 Msa0775430:CDS
CCACTTTGAATTGTCCACAT+CGG 0.628827 5_2:+52383630 Msa0775430:CDS
TGCTCAGTAGTGACCCGATG+TGG 0.633127 5_2:-52383644 None:intergenic
AGAAGAAGAAGCACTCGAGG+AGG 0.636304 5_2:+52382204 Msa0775430:CDS
GCTAAGACATGCCATTCCTA+CGG 0.637351 5_2:+52383730 Msa0775430:CDS
GCTTGTGCTCAAGGCTACAG+AGG 0.642505 5_2:-52385602 None:intergenic
AGAAGAAGAAGAAGCACTCG+AGG 0.642739 5_2:+52382201 Msa0775430:CDS
TGAACCTGAATCCTGATGGA+TGG 0.648338 5_2:+52384750 Msa0775430:CDS
CTTGTGCTCAAGGCTACAGA+GGG 0.650690 5_2:-52385601 None:intergenic
TCATTTACAGGGTCGACATG+CGG 0.654000 5_2:+52385329 Msa0775430:intron
GTGTTGGGAGTTGAACAAGA+AGG 0.670981 5_2:-52381981 None:intergenic
AGGATTCAGGTTCATCGGAG+AGG 0.675833 5_2:-52384741 None:intergenic
TTATCAGATATCATAGCAGG+CGG 0.676415 5_2:+52384277 Msa0775430:CDS
CCGATGTGGACAATTCAAAG+TGG 0.705167 5_2:-52383630 None:intergenic
GTTGCCAGGATATCATCGCG+TGG 0.707132 5_2:-52386065 None:intergenic
GGAAAAGCTGAGAAGAAACG+TGG 0.725862 5_2:+52386778 Msa0775430:CDS
TTGAACAAGAAGGAACAGTG+TGG 0.730608 5_2:-52381971 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAACAATTTAATTAT+TGG - chr5_2:52384088-52384107 None:intergenic 10.0%
!!! TATATAAGTGAAAATTTTAA+TGG + chr5_2:52385936-52385955 Msa0775430:CDS 10.0%
!!! ATATTTTAAAAGAATGACTT+AGG - chr5_2:52383760-52383779 None:intergenic 15.0%
!!! TTTTAATTGAAAAACTTTGT+AGG + chr5_2:52384633-52384652 Msa0775430:intron 15.0%
!!! TTGAATATGTTTCTTTTAAT+TGG + chr5_2:52385125-52385144 Msa0775430:intron 15.0%
!! ATTCTTAAAAAGATAAATGT+TGG - chr5_2:52385223-52385242 None:intergenic 15.0%
!!! TAAAATTTTCACTTATATAG+CGG - chr5_2:52385935-52385954 None:intergenic 15.0%
!! AATCAAAATTTCAACTTTAA+AGG - chr5_2:52386425-52386444 None:intergenic 15.0%
!! TTTGTTAATTAGATATACAT+AGG + chr5_2:52386599-52386618 Msa0775430:intron 15.0%
!! AAGCTATATTATTAATCTTA+AGG + chr5_2:52386650-52386669 Msa0775430:intron 15.0%
!! AGCTATATTATTAATCTTAA+GGG + chr5_2:52386651-52386670 Msa0775430:intron 15.0%
!! ATTTCTCATATTGTTTGTAT+GGG + chr5_2:52382558-52382577 Msa0775430:intron 20.0%
!!! TTTTATTTTACTAGTGAATG+TGG + chr5_2:52382584-52382603 Msa0775430:intron 20.0%
!! GGGAAAAATATAGAAATTTA+GGG + chr5_2:52383165-52383184 Msa0775430:intron 20.0%
!! GGAAAAATATAGAAATTTAG+GGG + chr5_2:52383166-52383185 Msa0775430:intron 20.0%
!!! TCCTTTTAATATTTTCATTG+TGG + chr5_2:52384057-52384076 Msa0775430:intron 20.0%
!! TCCACAATGAAAATATTAAA+AGG - chr5_2:52384061-52384080 None:intergenic 20.0%
!!! ATAAACATTATGGACTAAAT+AGG - chr5_2:52384134-52384153 None:intergenic 20.0%
!! TGAATGATACATAAACATTA+TGG - chr5_2:52384144-52384163 None:intergenic 20.0%
!!! TTGTATGTGTTATTTTTACT+AGG + chr5_2:52384907-52384926 Msa0775430:intron 20.0%
!!! TGTATGTGTTATTTTTACTA+GGG + chr5_2:52384908-52384927 Msa0775430:intron 20.0%
!!! TATTACATTTTAGGACTATA+TGG - chr5_2:52385072-52385091 None:intergenic 20.0%
!! AAAAAATTCATAACTACGAA+GGG - chr5_2:52385166-52385185 None:intergenic 20.0%
!! AAAATAAGTAGAAACGAAAA+GGG - chr5_2:52385855-52385874 None:intergenic 20.0%
!! TAAAATAAGTAGAAACGAAA+AGG - chr5_2:52385856-52385875 None:intergenic 20.0%
!! AATATTGTTTATGTAATTGC+AGG + chr5_2:52385881-52385900 Msa0775430:intron 20.0%
!! CTTGTATCTATAAAATCAAT+AGG - chr5_2:52385975-52385994 None:intergenic 20.0%
!!! ATTTTATAGATACAAGTACA+GGG + chr5_2:52385979-52385998 Msa0775430:CDS 20.0%
!!! TTTTGATTTACAAAATTGCA+AGG + chr5_2:52386437-52386456 Msa0775430:intron 20.0%
!!! TTTGATTTACAAAATTGCAA+GGG + chr5_2:52386438-52386457 Msa0775430:intron 20.0%
!!! GTTACTTGATATAATTTTTC+AGG + chr5_2:52386680-52386699 Msa0775430:intron 20.0%
!! ATTTAAAAGTGACTATCTAT+TGG - chr5_2:52387270-52387289 None:intergenic 20.0%
!!! TTTGTTTTTGTTTGAGTGTT+GGG - chr5_2:52381999-52382018 None:intergenic 25.0%
!!! TTTTGTTTTTGTTTGAGTGT+TGG - chr5_2:52382000-52382019 None:intergenic 25.0%
! AAGAAGAAGAAGAAGAAAAT+GGG + chr5_2:52382227-52382246 Msa0775430:CDS 25.0%
! AAATGAAAAGATTGAGAAAC+TGG + chr5_2:52382258-52382277 Msa0775430:CDS 25.0%
!!! TTAAGTTGCGATTTTTCTTA+TGG + chr5_2:52382404-52382423 Msa0775430:intron 25.0%
!! TAAGTTGCGATTTTTCTTAT+GGG + chr5_2:52382405-52382424 Msa0775430:intron 25.0%
!!! TGTTGGAATTTTGTTGTTAT+AGG + chr5_2:52382428-52382447 Msa0775430:intron 25.0%
! AAAGAAAACAAGGTTTCATA+GGG - chr5_2:52382509-52382528 None:intergenic 25.0%
! CATTTCTCATATTGTTTGTA+TGG + chr5_2:52382557-52382576 Msa0775430:intron 25.0%
! AAAAATGTTGTGTTTGTTTG+AGG + chr5_2:52382663-52382682 Msa0775430:intron 25.0%
!!! TCCTCAAAGTTGATTTTATA+TGG + chr5_2:52382726-52382745 Msa0775430:intron 25.0%
! TCCATATAAAATCAACTTTG+AGG - chr5_2:52382730-52382749 None:intergenic 25.0%
!!! GTTGATTTTATATGGAACAA+AGG + chr5_2:52382734-52382753 Msa0775430:intron 25.0%
!!! TGATTGATTTGTTCTTGTTA+AGG + chr5_2:52382784-52382803 Msa0775430:intron 25.0%
! CTCATGATAGTTTAAGAAAA+TGG + chr5_2:52382864-52382883 Msa0775430:intron 25.0%
! CGGGAAAAATATAGAAATTT+AGG + chr5_2:52383164-52383183 Msa0775430:intron 25.0%
! AGTATACGTTGAAATTTGAA+TGG - chr5_2:52383299-52383318 None:intergenic 25.0%
! AAGTTGCATTCAAATAACAA+AGG - chr5_2:52383334-52383353 None:intergenic 25.0%
!! ATTTTACCAATTAGGAATGA+TGG + chr5_2:52383488-52383507 Msa0775430:intron 25.0%
! CAATTCAATATCACAAAAGA+TGG - chr5_2:52383601-52383620 None:intergenic 25.0%
!! CTTTTGTGATATTGAATTGA+AGG + chr5_2:52383602-52383621 Msa0775430:intron 25.0%
!!! CTTTAGTTTTGAAGAATGTT+AGG + chr5_2:52383785-52383804 Msa0775430:intron 25.0%
!! CTGTTTTATGTGTTTCAATA+TGG + chr5_2:52383845-52383864 Msa0775430:intron 25.0%
! CAATATGGTATATTGTGATT+TGG + chr5_2:52383860-52383879 Msa0775430:intron 25.0%
!! TAATTACATGACGGAAAAAA+GGG - chr5_2:52383927-52383946 None:intergenic 25.0%
!! ATAATTACATGACGGAAAAA+AGG - chr5_2:52383928-52383947 None:intergenic 25.0%
! TAAGCCTTCAATTTATGAAT+AGG - chr5_2:52384011-52384030 None:intergenic 25.0%
! TATGATTAAAGCAGAAAAAG+AGG - chr5_2:52384431-52384450 None:intergenic 25.0%
! CTGCTTTAATCATAAAAGAA+AGG + chr5_2:52384437-52384456 Msa0775430:intron 25.0%
! GAAAATGAACAATTACATGA+AGG - chr5_2:52384571-52384590 None:intergenic 25.0%
! TAATCCTACAAATGATTGTA+TGG + chr5_2:52384658-52384677 Msa0775430:CDS 25.0%
!!! GTATGTGTTATTTTTACTAG+GGG + chr5_2:52384909-52384928 Msa0775430:intron 25.0%
! GAAAAAATTCATAACTACGA+AGG - chr5_2:52385167-52385186 None:intergenic 25.0%
!!! GTAGTTATGAATTTTTTCCT+TGG + chr5_2:52385169-52385188 Msa0775430:intron 25.0%
!!! TATGAATTTTTTCCTTGGTT+AGG + chr5_2:52385174-52385193 Msa0775430:intron 25.0%
!!! ATGAATTTTTTCCTTGGTTA+GGG + chr5_2:52385175-52385194 Msa0775430:intron 25.0%
! AAAGATAAATGTTGGAAAGA+TGG - chr5_2:52385215-52385234 None:intergenic 25.0%
!! AATTGGTTTCATATATGACA+TGG - chr5_2:52385280-52385299 None:intergenic 25.0%
!!! TAACTTTGCTACCTTTTTTA+TGG - chr5_2:52385387-52385406 None:intergenic 25.0%
! CAAAATGGTTTCTATATTGT+AGG + chr5_2:52385539-52385558 Msa0775430:intron 25.0%
!!! AGAATTTTGTTTCCAGTTAT+TGG - chr5_2:52385654-52385673 None:intergenic 25.0%
! TTAAACAAAAAAGCTACCTT+TGG - chr5_2:52385807-52385826 None:intergenic 25.0%
! TATAAAATCAATAGGATGCA+GGG - chr5_2:52385967-52385986 None:intergenic 25.0%
!! GATTTTATAGATACAAGTAC+AGG + chr5_2:52385978-52385997 Msa0775430:CDS 25.0%
!! ATCTTTTGTCATACATAGAA+AGG - chr5_2:52386180-52386199 None:intergenic 25.0%
!!! TCTTGTTGGTTTAAAACATT+GGG + chr5_2:52386271-52386290 Msa0775430:intron 25.0%
! AAAGGCTTAAAAATTTGAAG+AGG - chr5_2:52386407-52386426 None:intergenic 25.0%
! TTCTGTATCCATACTATTAA+AGG - chr5_2:52386631-52386650 None:intergenic 25.0%
! GTATCATATGCATATTAGAT+TGG + chr5_2:52387078-52387097 Msa0775430:three_prime_UTR 25.0%
!! TTTCACCACTTGTTTGTTTT+TGG - chr5_2:52381918-52381937 None:intergenic 30.0%
CGAAGACAAAAAGAAAGAAA+GGG - chr5_2:52382023-52382042 None:intergenic 30.0%
ACGAAGACAAAAAGAAAGAA+AGG - chr5_2:52382024-52382043 None:intergenic 30.0%
TCTCTTTCAATGAGAACTTT+GGG - chr5_2:52382151-52382170 None:intergenic 30.0%
GAAGAAGAAGAAGAAGAAAA+TGG + chr5_2:52382226-52382245 Msa0775430:CDS 30.0%
AGAAGAAGAAGAAGAAAATG+GGG + chr5_2:52382228-52382247 Msa0775430:CDS 30.0%
!! GTTTTGATGCTAATAGGAAA+GGG + chr5_2:52382287-52382306 Msa0775430:CDS 30.0%
!! AAGTTTGCAAGGTTTGTTAA+TGG + chr5_2:52382338-52382357 Msa0775430:intron 30.0%
CAAAGAAAACAAGGTTTCAT+AGG - chr5_2:52382510-52382529 None:intergenic 30.0%
! GGAGTTTTACAAAGAAAACA+AGG - chr5_2:52382519-52382538 None:intergenic 30.0%
! TGTTTTCTTTGTAAAACTCC+TGG + chr5_2:52382519-52382538 Msa0775430:CDS 30.0%
ATGTTGATATTCAACTTACC+AGG - chr5_2:52382540-52382559 None:intergenic 30.0%
! TGTGGTTTGATGATATATGA+TGG + chr5_2:52382602-52382621 Msa0775430:intron 30.0%
AGAGTATGTTATGTCATGTT+TGG + chr5_2:52382690-52382709 Msa0775430:intron 30.0%
GAGTATGTTATGTCATGTTT+GGG + chr5_2:52382691-52382710 Msa0775430:intron 30.0%
! ATATGGAACAAAGGTGATTT+TGG + chr5_2:52382743-52382762 Msa0775430:intron 30.0%
ATTTGTTCTTGTTAAGGACT+AGG + chr5_2:52382790-52382809 Msa0775430:intron 30.0%
TTTGTTCTTGTTAAGGACTA+GGG + chr5_2:52382791-52382810 Msa0775430:intron 30.0%
TGTCTGACATCAATAAATGT+CGG + chr5_2:52382898-52382917 Msa0775430:intron 30.0%
GTTGTGAAGATATACATAGT+CGG + chr5_2:52382970-52382989 Msa0775430:intron 30.0%
ACTATCCTAGATTCACAATT+AGG + chr5_2:52383103-52383122 Msa0775430:intron 30.0%
CTATCCTAGATTCACAATTA+GGG + chr5_2:52383104-52383123 Msa0775430:intron 30.0%
! TTCTATATTTTTCCCGCTAT+TGG - chr5_2:52383160-52383179 None:intergenic 30.0%
GAGTATTAATCCTACATTCA+CGG + chr5_2:52383262-52383281 Msa0775430:intron 30.0%
TGAAATATCAGATAGAGTTG+CGG - chr5_2:52383408-52383427 None:intergenic 30.0%
CTATCTGATATTTCACATAG+TGG + chr5_2:52383413-52383432 Msa0775430:intron 30.0%
! AAAATGAAGAGTGTATGTCT+GGG - chr5_2:52383473-52383492 None:intergenic 30.0%
! TAAAATGAAGAGTGTATGTC+TGG - chr5_2:52383474-52383493 None:intergenic 30.0%
! CACTCTTCATTTTACCAATT+AGG + chr5_2:52383480-52383499 Msa0775430:intron 30.0%
AGATAACCATCATTCCTAAT+TGG - chr5_2:52383497-52383516 None:intergenic 30.0%
CAGTGTAAACGAAAAAGTAA+TGG - chr5_2:52383891-52383910 None:intergenic 30.0%
TTTGCACGATAATTACATGA+CGG - chr5_2:52383936-52383955 None:intergenic 30.0%
CTTCAATTTATGAATAGGTG+TGG - chr5_2:52384006-52384025 None:intergenic 30.0%
CACACCTATTCATAAATTGA+AGG + chr5_2:52384004-52384023 Msa0775430:intron 30.0%
TCATAAAAGAAAGGACAACT+TGG + chr5_2:52384446-52384465 Msa0775430:intron 30.0%
TAGACCATACAATCATTTGT+AGG - chr5_2:52384665-52384684 None:intergenic 30.0%
!! AACCATTAGTTGTACTGATT+TGG + chr5_2:52384703-52384722 Msa0775430:CDS 30.0%
ATGGATATTCACTATGAGAA+AGG + chr5_2:52384959-52384978 Msa0775430:CDS 30.0%
! GGAGGGATATATTACATTTT+AGG - chr5_2:52385081-52385100 None:intergenic 30.0%
CTATAGCCAACAAAATTTGA+TGG - chr5_2:52385102-52385121 None:intergenic 30.0%
CAATTTATATTCCCTAACCA+AGG - chr5_2:52385189-52385208 None:intergenic 30.0%
TAGTCATTGAGTCCAAAAAA+AGG + chr5_2:52385246-52385265 Msa0775430:intron 30.0%
!!! ATGGCTATTGATCCTTTTTT+TGG - chr5_2:52385261-52385280 None:intergenic 30.0%
!! GCAGTTTTGATCCATAAAAA+AGG + chr5_2:52385373-52385392 Msa0775430:CDS 30.0%
AAAAAAGGTAGCAAAGTTAC+TGG + chr5_2:52385388-52385407 Msa0775430:CDS 30.0%
! GGATTCTATCTTTGGTAATA+TGG + chr5_2:52385707-52385726 Msa0775430:CDS 30.0%
CTATAAAATCAATAGGATGC+AGG - chr5_2:52385968-52385987 None:intergenic 30.0%
ACGATTAGTATGATTATCTG+AGG - chr5_2:52386117-52386136 None:intergenic 30.0%
!! CTCTTGTTGGTTTAAAACAT+TGG + chr5_2:52386270-52386289 Msa0775430:intron 30.0%
AAAATTGAACCTACACAAAG+TGG + chr5_2:52386305-52386324 Msa0775430:intron 30.0%
! TTTAGCACTCACTCTTTTAT+TGG - chr5_2:52386352-52386371 None:intergenic 30.0%
TACATGAGTTTACTCTTCAA+TGG - chr5_2:52386484-52386503 None:intergenic 30.0%
AACCCCAAAAAACATAAGAA+GGG - chr5_2:52387003-52387022 None:intergenic 30.0%
!!! TTCTTATGTTTTTTGGGGTT+GGG + chr5_2:52387003-52387022 Msa0775430:three_prime_UTR 30.0%
CATATGCATATTAGATTGGT+AGG + chr5_2:52387082-52387101 Msa0775430:three_prime_UTR 30.0%
TCTTCTGTACAGAGAAAATT+TGG + chr5_2:52387204-52387223 Msa0775430:three_prime_UTR 30.0%
TGTACAGAGAAAATTTGGTT+GGG + chr5_2:52387209-52387228 Msa0775430:three_prime_UTR 30.0%
TATCTATTGGCAAATCTGTT+GGG - chr5_2:52387257-52387276 None:intergenic 30.0%
CTCTTTCAATGAGAACTTTG+GGG - chr5_2:52382150-52382169 None:intergenic 35.0%
GTCTCTTTCAATGAGAACTT+TGG - chr5_2:52382152-52382171 None:intergenic 35.0%
AAAGATTGAGAAACTGGAAG+TGG + chr5_2:52382264-52382283 Msa0775430:CDS 35.0%
AAGATTGAGAAACTGGAAGT+GGG + chr5_2:52382265-52382284 Msa0775430:CDS 35.0%
!! AAGTGGGTTTTGATGCTAAT+AGG + chr5_2:52382281-52382300 Msa0775430:CDS 35.0%
!! GGTTTTGATGCTAATAGGAA+AGG + chr5_2:52382286-52382305 Msa0775430:CDS 35.0%
! TTTCTGAGAGTTAGCGTAAT+GGG - chr5_2:52382319-52382338 None:intergenic 35.0%
!! TTTTCTGAGAGTTAGCGTAA+TGG - chr5_2:52382320-52382339 None:intergenic 35.0%
AACTCTCAGAAAAGTTTGCA+AGG + chr5_2:52382327-52382346 Msa0775430:CDS 35.0%
!! CAAGGTTTGTTAATGGTCAT+TGG + chr5_2:52382345-52382364 Msa0775430:intron 35.0%
ATGTTATGTCATGTTTGGGA+AGG + chr5_2:52382695-52382714 Msa0775430:intron 35.0%
!!! GAACAAAGGTGATTTTGGTT+TGG + chr5_2:52382748-52382767 Msa0775430:intron 35.0%
CATCAATAAATGTCGGATAC+TGG + chr5_2:52382905-52382924 Msa0775430:intron 35.0%
! TACATAGTCGGTCTAGAATT+TGG + chr5_2:52382982-52383001 Msa0775430:intron 35.0%
! TAGTGTGGCAGTTTTTATAG+CGG - chr5_2:52383087-52383106 None:intergenic 35.0%
! ATTGTGAATCTAGGATAGTG+TGG - chr5_2:52383102-52383121 None:intergenic 35.0%
GTTACCCTAATTGTGAATCT+AGG - chr5_2:52383111-52383130 None:intergenic 35.0%
ATTCACAATTAGGGTAACAG+CGG + chr5_2:52383113-52383132 Msa0775430:intron 35.0%
TCATAGAAACACTGAAGAGT+TGG + chr5_2:52383238-52383257 Msa0775430:intron 35.0%
TTGCATATTACCGTGAATGT+AGG - chr5_2:52383275-52383294 None:intergenic 35.0%
! TTGTCTCGTATTTTTCTCTC+TGG + chr5_2:52383525-52383544 Msa0775430:intron 35.0%
! AAGGTTTAGAGGTTTTTCTG+CGG - chr5_2:52383688-52383707 None:intergenic 35.0%
CAGAAAAACCTCTAAACCTT+TGG + chr5_2:52383688-52383707 Msa0775430:CDS 35.0%
GAATCACAACTGCAAATTAG+TGG - chr5_2:52383819-52383838 None:intergenic 35.0%
! AGAGTTTTTGCTCGAACTTA+GGG + chr5_2:52384034-52384053 Msa0775430:intron 35.0%
TGTATCATTCACTTTGTTCC+AGG + chr5_2:52384153-52384172 Msa0775430:intron 35.0%
CTGTTATCAGATATCATAGC+AGG + chr5_2:52384274-52384293 Msa0775430:CDS 35.0%
TTATCAGATATCATAGCAGG+CGG + chr5_2:52384277-52384296 Msa0775430:CDS 35.0%
ACAGGATGTTATTCTTCGTA+GGG - chr5_2:52384323-52384342 None:intergenic 35.0%
AACAGGATGTTATTCTTCGT+AGG - chr5_2:52384324-52384343 None:intergenic 35.0%
GAAGAATAACATCCTGTTGT+CGG + chr5_2:52384326-52384345 Msa0775430:CDS 35.0%
AAGAATAACATCCTGTTGTC+GGG + chr5_2:52384327-52384346 Msa0775430:CDS 35.0%
AGGAATCAGTGGCTAAATAA+AGG - chr5_2:52384411-52384430 None:intergenic 35.0%
CTCCAAATCAGTACAACTAA+TGG - chr5_2:52384708-52384727 None:intergenic 35.0%
AATATTACATGCCATCCATC+AGG - chr5_2:52384764-52384783 None:intergenic 35.0%
!! TAAAGCATTTTCCAGGTGTT+TGG - chr5_2:52384935-52384954 None:intergenic 35.0%
AACACCTGGAAAATGCTTTA+TGG + chr5_2:52384935-52384954 Msa0775430:CDS 35.0%
!! CATACCATAAAGCATTTTCC+AGG - chr5_2:52384942-52384961 None:intergenic 35.0%
CTGGAAAATGCTTTATGGTA+TGG + chr5_2:52384940-52384959 Msa0775430:CDS 35.0%
GTGAAGAAAGCCAAAGTTAT+CGG - chr5_2:52384999-52385018 None:intergenic 35.0%
! TTTAGGACTATATGGACATG+CGG - chr5_2:52385064-52385083 None:intergenic 35.0%
! ATCCCTCCATCAAATTTTGT+TGG + chr5_2:52385093-52385112 Msa0775430:intron 35.0%
AGCCAACAAAATTTGATGGA+GGG - chr5_2:52385098-52385117 None:intergenic 35.0%
TAGCCAACAAAATTTGATGG+AGG - chr5_2:52385099-52385118 None:intergenic 35.0%
GATATGTCTGGTATGCTAAT+TGG - chr5_2:52385297-52385316 None:intergenic 35.0%
!! TAACCTTCTGTGTCATTTAC+AGG + chr5_2:52385317-52385336 Msa0775430:intron 35.0%
!! AACCTTCTGTGTCATTTACA+GGG + chr5_2:52385318-52385337 Msa0775430:intron 35.0%
GATCATTTCCACAAGTCAAA+AGG - chr5_2:52385444-52385463 None:intergenic 35.0%
ACATGCATGCTGAAACAAAA+TGG + chr5_2:52385524-52385543 Msa0775430:intron 35.0%
GCATATTTCTCTCCAATAAC+TGG + chr5_2:52385639-52385658 Msa0775430:CDS 35.0%
CAAAATTCTTACTACGTCAC+AGG + chr5_2:52385665-52385684 Msa0775430:CDS 35.0%
CGTATATGGGATTCTATCTT+TGG + chr5_2:52385699-52385718 Msa0775430:CDS 35.0%
CATGACTATGCACAATTTCT+CGG - chr5_2:52385743-52385762 None:intergenic 35.0%
GGACTTTGCCTTTAATAGTA+TGG + chr5_2:52386620-52386639 Msa0775430:intron 35.0%
!!! TTTTCAGGTCTCTGTTCATT+TGG + chr5_2:52386695-52386714 Msa0775430:intron 35.0%
GAAAGCAAAATTGTGGTTTG+TGG + chr5_2:52386757-52386776 Msa0775430:CDS 35.0%
GGAAATGAATCCATCATCAT+CGG - chr5_2:52386833-52386852 None:intergenic 35.0%
!!! TTTCAGTTTTTTGTGCGTGA+AGG + chr5_2:52386935-52386954 Msa0775430:three_prime_UTR 35.0%
CCTATAAATGGTTAGCAGTT+TGG - chr5_2:52386970-52386989 None:intergenic 35.0%
CCAAACTGCTAACCATTTAT+AGG + chr5_2:52386967-52386986 Msa0775430:three_prime_UTR 35.0%
AAAAACATAAGAAGGGAGCT+TGG - chr5_2:52386996-52387015 None:intergenic 35.0%
!!! AGCTCCCTTCTTATGTTTTT+TGG + chr5_2:52386996-52387015 Msa0775430:three_prime_UTR 35.0%
!!! GCTCCCTTCTTATGTTTTTT+GGG + chr5_2:52386997-52387016 Msa0775430:three_prime_UTR 35.0%
!!! CTCCCTTCTTATGTTTTTTG+GGG + chr5_2:52386998-52387017 Msa0775430:three_prime_UTR 35.0%
CAACCCCAAAAAACATAAGA+AGG - chr5_2:52387004-52387023 None:intergenic 35.0%
!!! CTTCTTATGTTTTTTGGGGT+TGG + chr5_2:52387002-52387021 Msa0775430:three_prime_UTR 35.0%
!!! TCTTATGTTTTTTGGGGTTG+GGG + chr5_2:52387004-52387023 Msa0775430:three_prime_UTR 35.0%
TAGGTGACTTCTCTTTGTAT+AGG + chr5_2:52387101-52387120 Msa0775430:three_prime_UTR 35.0%
! GAATACAAAAGCGTGAAGAT+AGG - chr5_2:52387155-52387174 None:intergenic 35.0%
CTGTACAGAGAAAATTTGGT+TGG + chr5_2:52387208-52387227 Msa0775430:three_prime_UTR 35.0%
CTATCTATTGGCAAATCTGT+TGG - chr5_2:52387258-52387277 None:intergenic 35.0%
TTGAACAAGAAGGAACAGTG+TGG - chr5_2:52381974-52381993 None:intergenic 40.0%
TTCCATCATCTCCGCTAAAA+GGG + chr5_2:52382071-52382090 Msa0775430:five_prime_UTR 40.0%
!! TTCGGTTCGGTTCTTTAACA+TGG + chr5_2:52382099-52382118 Msa0775430:exon 40.0%
AAAGAGGTTCTACGAGTAAC+CGG - chr5_2:52382127-52382146 None:intergenic 40.0%
! AATGAGAACTTTGGGGAAAG+AGG - chr5_2:52382143-52382162 None:intergenic 40.0%
! GCGATTTTTCTTATGGGTGT+TGG + chr5_2:52382411-52382430 Msa0775430:intron 40.0%
TTATAGGTGTGTAAGAAGCC+TGG + chr5_2:52382444-52382463 Msa0775430:intron 40.0%
!! TCATGTTTGGGAAGGTATTG+AGG + chr5_2:52382703-52382722 Msa0775430:intron 40.0%
CTTGTTAAGGACTAGGGAAA+AGG + chr5_2:52382797-52382816 Msa0775430:intron 40.0%
ACATCTACATCCATGTTTGC+AGG - chr5_2:52382823-52382842 None:intergenic 40.0%
TGCAAACATGGATGTAGATG+TGG + chr5_2:52382822-52382841 Msa0775430:intron 40.0%
! TCATGAGTGAATGACTTGTC+CGG - chr5_2:52382851-52382870 None:intergenic 40.0%
! TCGGTCTAGAATTTGGATGA+AGG + chr5_2:52382989-52383008 Msa0775430:intron 40.0%
GAATTTGGATGAAGGAGACT+AGG + chr5_2:52382997-52383016 Msa0775430:intron 40.0%
CAGTTTCTGTTAGCCAATAG+CGG + chr5_2:52383144-52383163 Msa0775430:intron 40.0%
AGTTTCTGTTAGCCAATAGC+GGG + chr5_2:52383145-52383164 Msa0775430:intron 40.0%
CCACTTTGAATTGTCCACAT+CGG + chr5_2:52383630-52383649 Msa0775430:CDS 40.0%
CACTTTGAATTGTCCACATC+GGG + chr5_2:52383631-52383650 Msa0775430:CDS 40.0%
! AGGTTTAGAGGTTTTTCTGC+GGG - chr5_2:52383687-52383706 None:intergenic 40.0%
CACATACTCCAAAGGTTTAG+AGG - chr5_2:52383699-52383718 None:intergenic 40.0%
CGTTCAAACACATACTCCAA+AGG - chr5_2:52383707-52383726 None:intergenic 40.0%
! GAGAGTTTTTGCTCGAACTT+AGG + chr5_2:52384033-52384052 Msa0775430:intron 40.0%
TGTTCCAGGCTATTGATCAT+AGG + chr5_2:52384167-52384186 Msa0775430:intron 40.0%
! TGGTCTGGAATCACACATTT+GGG - chr5_2:52384243-52384262 None:intergenic 40.0%
! TTGGTCTGGAATCACACATT+TGG - chr5_2:52384244-52384263 None:intergenic 40.0%
AGCAGAAAAAGAGGAATCAG+TGG - chr5_2:52384422-52384441 None:intergenic 40.0%
TGAGAAGGTTTACGAGAAAG+TGG + chr5_2:52384481-52384500 Msa0775430:CDS 40.0%
!! AGTTGTACTGATTTGGAGAC+TGG + chr5_2:52384710-52384729 Msa0775430:CDS 40.0%
CACAGAAGGTTAGATATGTC+TGG - chr5_2:52385309-52385328 None:intergenic 40.0%
TGCATCACCATTCCTATGAT+TGG - chr5_2:52385356-52385375 None:intergenic 40.0%
AAAAGGATGTCTGGTTGCAT+TGG - chr5_2:52385427-52385446 None:intergenic 40.0%
TATATTGTAGGCGCGCATTT+GGG + chr5_2:52385551-52385570 Msa0775430:intron 40.0%
AGGACAATCGTCTTCGTATA+TGG + chr5_2:52385685-52385704 Msa0775430:CDS 40.0%
GGACAATCGTCTTCGTATAT+GGG + chr5_2:52385686-52385705 Msa0775430:CDS 40.0%
!! CAGCTTTGAAGGGTGTTAAA+TGG - chr5_2:52385776-52385795 None:intergenic 40.0%
TAACACCCTTCAAAGCTGAA+TGG + chr5_2:52385778-52385797 Msa0775430:CDS 40.0%
AACACCCTTCAAAGCTGAAT+GGG + chr5_2:52385779-52385798 Msa0775430:CDS 40.0%
TCATTCATACCTAGAACTCC+CGG - chr5_2:52386090-52386109 None:intergenic 40.0%
TCTAGTACTCACTCTCTTGT+TGG + chr5_2:52386257-52386276 Msa0775430:intron 40.0%
ATTGAACCTACACAAAGTGG+TGG + chr5_2:52386308-52386327 Msa0775430:intron 40.0%
TTGAACCTACACAAAGTGGT+GGG + chr5_2:52386309-52386328 Msa0775430:intron 40.0%
TCTGTTCATTTGGAAGCCAA+AGG + chr5_2:52386705-52386724 Msa0775430:CDS 40.0%
GCCAAAGGAAAAATCTGAGA+CGG + chr5_2:52386720-52386739 Msa0775430:CDS 40.0%
! ACCGTCTCAGATTTTTCCTT+TGG - chr5_2:52386724-52386743 None:intergenic 40.0%
GAAGGACGAAAGCAAAATTG+TGG + chr5_2:52386750-52386769 Msa0775430:CDS 40.0%
AAGAAACGTGGTAAGAGGAA+AGG + chr5_2:52386790-52386809 Msa0775430:CDS 40.0%
ATCGATGAATCCGATGATGA+TGG + chr5_2:52386820-52386839 Msa0775430:CDS 40.0%
! CATTCAGTCTGCTTGGATTT+TGG - chr5_2:52386868-52386887 None:intergenic 40.0%
CAAAATCCAAGCAGACTGAA+TGG + chr5_2:52386866-52386885 Msa0775430:CDS 40.0%
CAATTTCCATTCAGTCTGCT+TGG - chr5_2:52386875-52386894 None:intergenic 40.0%
! GGAGCTTGGTAACCTATAAA+TGG - chr5_2:52386982-52387001 None:intergenic 40.0%
! TATGCATGCGACTTCTCTTT+TGG + chr5_2:52387043-52387062 Msa0775430:three_prime_UTR 40.0%
! ATGCATGCGACTTCTCTTTT+GGG + chr5_2:52387044-52387063 Msa0775430:three_prime_UTR 40.0%
GTGTTGGGAGTTGAACAAGA+AGG - chr5_2:52381984-52382003 None:intergenic 45.0%
!! TTTAGCGGAGATGATGGAAG+CGG - chr5_2:52382070-52382089 None:intergenic 45.0%
CTTCCATCATCTCCGCTAAA+AGG + chr5_2:52382070-52382089 Msa0775430:five_prime_UTR 45.0%
! TAAAAGGGTCGCTTTCGGTT+CGG + chr5_2:52382086-52382105 Msa0775430:five_prime_UTR 45.0%
TCGGTTCTTTAACATGGCAC+CGG + chr5_2:52382105-52382124 Msa0775430:exon 45.0%
!! AGAAGAAGAAGAAGCACTCG+AGG + chr5_2:52382201-52382220 Msa0775430:CDS 45.0%
TAAGAAGCCTGGTCATGAAG+CGG + chr5_2:52382455-52382474 Msa0775430:CDS 45.0%
ATGGATGTAGATGTGGACAC+CGG + chr5_2:52382829-52382848 Msa0775430:intron 45.0%
! GTCGACTCACAGATTGAAAG+CGG - chr5_2:52382934-52382953 None:intergenic 45.0%
CCGATGTGGACAATTCAAAG+TGG - chr5_2:52383633-52383652 None:intergenic 45.0%
!! TACTGAGCATGGTGTTGTTC+CGG + chr5_2:52383658-52383677 Msa0775430:CDS 45.0%
! GGTTTAGAGGTTTTTCTGCG+GGG - chr5_2:52383686-52383705 None:intergenic 45.0%
TAGGAATGGCATGTCTTAGC+TGG - chr5_2:52383730-52383749 None:intergenic 45.0%
GCTAAGACATGCCATTCCTA+CGG + chr5_2:52383730-52383749 Msa0775430:CDS 45.0%
ACTTAGGCTTACCGTAGGAA+TGG - chr5_2:52383744-52383763 None:intergenic 45.0%
GAATGACTTAGGCTTACCGT+AGG - chr5_2:52383749-52383768 None:intergenic 45.0%
GTCTCCTATGATCAATAGCC+TGG - chr5_2:52384174-52384193 None:intergenic 45.0%
TGATAACAGCGCAACTCACT+TGG - chr5_2:52384263-52384282 None:intergenic 45.0%
GGATGTTATTCTTCGTAGGG+TGG - chr5_2:52384320-52384339 None:intergenic 45.0%
TAACCTTATCTCCCGACAAC+AGG - chr5_2:52384341-52384360 None:intergenic 45.0%
AGAAAGGACAACTTGGAGTC+TGG + chr5_2:52384453-52384472 Msa0775430:intron 45.0%
GAAAGGACAACTTGGAGTCT+GGG + chr5_2:52384454-52384473 Msa0775430:intron 45.0%
!! TGGAGTCTGGGATTTTGAGA+AGG + chr5_2:52384466-52384485 Msa0775430:CDS 45.0%
TATGGTCTATTCCGCATCCT+CGG + chr5_2:52384676-52384695 Msa0775430:CDS 45.0%
ACAACTAATGGTTCCATCCG+AGG - chr5_2:52384696-52384715 None:intergenic 45.0%
! CCATCAGGATTCAGGTTCAT+CGG - chr5_2:52384749-52384768 None:intergenic 45.0%
TGAACCTGAATCCTGATGGA+TGG + chr5_2:52384750-52384769 Msa0775430:CDS 45.0%
GACATGCGGAGACAGTAAAA+CGG - chr5_2:52385050-52385069 None:intergenic 45.0%
GACCCTGTAAATGACACAGA+AGG - chr5_2:52385323-52385342 None:intergenic 45.0%
TCATTTACAGGGTCGACATG+CGG + chr5_2:52385329-52385348 Msa0775430:intron 45.0%
ATGCGGTCCAATCATAGGAA+TGG + chr5_2:52385346-52385365 Msa0775430:CDS 45.0%
CTGGTTGCATTGGATTGCAA+TGG - chr5_2:52385417-52385436 None:intergenic 45.0%
CCACAAGTCAAAAGGATGTC+TGG - chr5_2:52385436-52385455 None:intergenic 45.0%
!!! CCAGACATCCTTTTGACTTG+TGG + chr5_2:52385433-52385452 Msa0775430:CDS 45.0%
CTATATTGTAGGCGCGCATT+TGG + chr5_2:52385550-52385569 Msa0775430:intron 45.0%
GATATGCGTCACTTAGAAGC+TGG + chr5_2:52385573-52385592 Msa0775430:CDS 45.0%
TAACAACACGCTTGTGCTCA+AGG - chr5_2:52385614-52385633 None:intergenic 45.0%
CTATGCACAATTTCTCGGCT+GGG - chr5_2:52385738-52385757 None:intergenic 45.0%
ACTATGCACAATTTCTCGGC+TGG - chr5_2:52385739-52385758 None:intergenic 45.0%
!! GGATCCCATTCAGCTTTGAA+GGG - chr5_2:52385786-52385805 None:intergenic 45.0%
! TGGATCCCATTCAGCTTTGA+AGG - chr5_2:52385787-52385806 None:intergenic 45.0%
CAAAGCTGAATGGGATCCAA+AGG + chr5_2:52385788-52385807 Msa0775430:CDS 45.0%
AGATACAAGTACAGGGCAGT+TGG + chr5_2:52385986-52386005 Msa0775430:CDS 45.0%
GACTGATGGTTGTGATGTTC+GGG - chr5_2:52386028-52386047 None:intergenic 45.0%
GGACTGATGGTTGTGATGTT+CGG - chr5_2:52386029-52386048 None:intergenic 45.0%
GAACATCACAACCATCAGTC+CGG + chr5_2:52386028-52386047 Msa0775430:CDS 45.0%
AAGCTTATTCACCGGACTGA+TGG - chr5_2:52386042-52386061 None:intergenic 45.0%
CGTGGATGAAGCTTATTCAC+CGG - chr5_2:52386050-52386069 None:intergenic 45.0%
TATGTCCCACCACTTTGTGT+AGG - chr5_2:52386317-52386336 None:intergenic 45.0%
GGAAAAGCTGAGAAGAAACG+TGG + chr5_2:52386778-52386797 Msa0775430:CDS 45.0%
CTGAGAAGAAACGTGGTAAG+AGG + chr5_2:52386785-52386804 Msa0775430:CDS 45.0%
!!! GGATTTTGGCTTCTTGAGCT+TGG - chr5_2:52386854-52386873 None:intergenic 45.0%
! TGCATGCGACTTCTCTTTTG+GGG + chr5_2:52387045-52387064 Msa0775430:three_prime_UTR 45.0%
!! ATAATTTAAGAAAAAATATT+TGG - chr5_2:52384792-52384811 None:intergenic 5.0%
!! TTAGCGGAGATGATGGAAGC+GGG - chr5_2:52382069-52382088 None:intergenic 50.0%
! GACCCTTTTAGCGGAGATGA+TGG - chr5_2:52382076-52382095 None:intergenic 50.0%
! TCCGCTAAAAGGGTCGCTTT+CGG + chr5_2:52382081-52382100 Msa0775430:five_prime_UTR 50.0%
! ACCGAAAGCGACCCTTTTAG+CGG - chr5_2:52382085-52382104 None:intergenic 50.0%
!! AGAAGAAGAAGCACTCGAGG+AGG + chr5_2:52382204-52382223 Msa0775430:CDS 50.0%
AAGAAGCCTGGTCATGAAGC+GGG + chr5_2:52382456-52382475 Msa0775430:CDS 50.0%
TTGAAACCCGCTTCATGACC+AGG - chr5_2:52382465-52382484 None:intergenic 50.0%
! TGGTCATGAAGCGGGTTTCA+AGG + chr5_2:52382464-52382483 Msa0775430:CDS 50.0%
! GGTCATGAAGCGGGTTTCAA+GGG + chr5_2:52382465-52382484 Msa0775430:CDS 50.0%
AGGGAAAAGGCCTGCAAACA+TGG + chr5_2:52382810-52382829 Msa0775430:intron 50.0%
CAATCTGTGAGTCGACTGTG+TGG + chr5_2:52382938-52382957 Msa0775430:intron 50.0%
TGGATGAAGGAGACTAGGAG+AGG + chr5_2:52383002-52383021 Msa0775430:intron 50.0%
GGATGAAGGAGACTAGGAGA+GGG + chr5_2:52383003-52383022 Msa0775430:intron 50.0%
GCGGAAAACTAGACGCATAG+CGG - chr5_2:52383389-52383408 None:intergenic 50.0%
TAGCAGGCGGATAACAAGCT+TGG + chr5_2:52384290-52384309 Msa0775430:CDS 50.0%
CATCCTGTTGTCGGGAGATA+AGG + chr5_2:52384335-52384354 Msa0775430:CDS 50.0%
AATGGTTCCATCCGAGGATG+CGG - chr5_2:52384690-52384709 None:intergenic 50.0%
! AGGATTCAGGTTCATCGGAG+AGG - chr5_2:52384744-52384763 None:intergenic 50.0%
CCGATGAACCTGAATCCTGA+TGG + chr5_2:52384746-52384765 Msa0775430:CDS 50.0%
CATGCCATCCATCAGGATTC+AGG - chr5_2:52384757-52384776 None:intergenic 50.0%
TTTACTAGGGGCCAAACACC+TGG + chr5_2:52384921-52384940 Msa0775430:intron 50.0%
! TGAGAAAGGTCTTGTGCTCG+TGG + chr5_2:52384973-52384992 Msa0775430:CDS 50.0%
TCGACATGCGGTCCAATCAT+AGG + chr5_2:52385341-52385360 Msa0775430:CDS 50.0%
CTTGTGCTCAAGGCTACAGA+GGG - chr5_2:52385604-52385623 None:intergenic 50.0%
!! GCAGTTGGTAGCAGAAGTCA+TGG + chr5_2:52386001-52386020 Msa0775430:CDS 50.0%
TCATCCACGCGATGATATCC+TGG + chr5_2:52386061-52386080 Msa0775430:CDS 50.0%
! GGAAAAATCTGAGACGGTCG+AGG + chr5_2:52386726-52386745 Msa0775430:CDS 50.0%
ATTGTCTCGCTGCTCGACAA+AGG + chr5_2:52386891-52386910 Msa0775430:CDS 50.0%
AGGAGACTAGGAGAGGGTTG+TGG + chr5_2:52383009-52383028 Msa0775430:intron 55.0%
TGCTCAGTAGTGACCCGATG+TGG - chr5_2:52383647-52383666 None:intergenic 55.0%
CATCGGGTCACTACTGAGCA+TGG + chr5_2:52383647-52383666 Msa0775430:CDS 55.0%
ACAGCGCAACTCACTTGGTC+TGG - chr5_2:52384258-52384277 None:intergenic 55.0%
GTCTATTCCGCATCCTCGGA+TGG + chr5_2:52384680-52384699 Msa0775430:CDS 55.0%
TGACCTTGAGTAGACTCGCG+CGG - chr5_2:52384844-52384863 None:intergenic 55.0%
GTGCTCGTGGCCGATAACTT+TGG + chr5_2:52384986-52385005 Msa0775430:CDS 55.0%
GCTTGTGCTCAAGGCTACAG+AGG - chr5_2:52385605-52385624 None:intergenic 55.0%
GTTGCCAGGATATCATCGCG+TGG - chr5_2:52386068-52386087 None:intergenic 55.0%
CGCGATGATATCCTGGCAAC+CGG + chr5_2:52386068-52386087 Msa0775430:CDS 55.0%
GCGATGATATCCTGGCAACC+GGG + chr5_2:52386069-52386088 Msa0775430:CDS 55.0%
! ATCTGAGACGGTCGAGGAGA+AGG + chr5_2:52386732-52386751 Msa0775430:CDS 55.0%
! GAGGTTTTTCTGCGGGGTGC+CGG - chr5_2:52383680-52383699 None:intergenic 60.0%
TGACCGCGCGAGTCTACTCA+AGG + chr5_2:52384838-52384857 Msa0775430:intron 60.0%
TCCTGGCAACCGGGAGTTCT+AGG + chr5_2:52386078-52386097 Msa0775430:CDS 60.0%
ACCTAGAACTCCCGGTTGCC+AGG - chr5_2:52386082-52386101 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 52381915 52387289 52381915 ID=Msa0775430;Name=Msa0775430
chr5_2 mRNA 52381915 52387289 52381915 ID=Msa0775430-mRNA-1;Parent=Msa0775430;Name=Msa0775430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=203|1|1|1|1|1|11|365|557
chr5_2 exon 52381915 52382348 52381915 ID=Msa0775430-mRNA-1:exon:15602;Parent=Msa0775430-mRNA-1
chr5_2 exon 52382450 52382540 52382450 ID=Msa0775430-mRNA-1:exon:15603;Parent=Msa0775430-mRNA-1
chr5_2 exon 52383624 52383751 52383624 ID=Msa0775430-mRNA-1:exon:15604;Parent=Msa0775430-mRNA-1
chr5_2 exon 52384234 52384356 52384234 ID=Msa0775430-mRNA-1:exon:15605;Parent=Msa0775430-mRNA-1
chr5_2 exon 52384455 52384543 52384455 ID=Msa0775430-mRNA-1:exon:15606;Parent=Msa0775430-mRNA-1
chr5_2 exon 52384655 52384775 52384655 ID=Msa0775430-mRNA-1:exon:15607;Parent=Msa0775430-mRNA-1
chr5_2 exon 52384929 52385020 52384929 ID=Msa0775430-mRNA-1:exon:15608;Parent=Msa0775430-mRNA-1
chr5_2 exon 52385339 52385468 52385339 ID=Msa0775430-mRNA-1:exon:15609;Parent=Msa0775430-mRNA-1
chr5_2 exon 52385561 52385809 52385561 ID=Msa0775430-mRNA-1:exon:15610;Parent=Msa0775430-mRNA-1
chr5_2 exon 52385903 52386099 52385903 ID=Msa0775430-mRNA-1:exon:15611;Parent=Msa0775430-mRNA-1
chr5_2 exon 52386702 52387289 52386702 ID=Msa0775430-mRNA-1:exon:15612;Parent=Msa0775430-mRNA-1
chr5_2 five_prime_UTR 52381915 52382117 52381915 ID=Msa0775430-mRNA-1:five_prime_utr;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52382118 52382348 52382118 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52382450 52382540 52382450 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52383624 52383751 52383624 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52384234 52384356 52384234 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52384455 52384543 52384455 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52384655 52384775 52384655 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52384929 52385020 52384929 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52385339 52385468 52385339 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52385561 52385809 52385561 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52385903 52386099 52385903 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 CDS 52386702 52386924 52386702 ID=Msa0775430-mRNA-1:cds;Parent=Msa0775430-mRNA-1
chr5_2 three_prime_UTR 52386925 52387289 52386925 ID=Msa0775430-mRNA-1:three_prime_utr;Parent=Msa0775430-mRNA-1
Gene Sequence

>Msa0775430

ATGGCACCGGTTACTCGTAGAACCTCTTTCCCCAAAGTTCTCATTGAAAGAGACTCTGACTCTGAACAGAGTTCTTCTGATGAAGAAGAAGAAGAAGCACTCGAGGAGGAAGAAGAAGAAGAAGAAAATGGGGTTGCTGAAAATGAAAAGATTGAGAAACTGGAAGTGGGTTTTGATGCTAATAGGAAAGGGAAAAAACCCATTACGCTAACTCTCAGAAAAGTTTGCAAGGTGTGTAAGAAGCCTGGTCATGAAGCGGGTTTCAAGGGTGCTACTTACATTGATTGCCCTATGAAACCTTGTTTTCTTTGTAAAACTCCTGGACATACCACTTTGAATTGTCCACATCGGGTCACTACTGAGCATGGTGTTGTTCCGGCACCCCGCAGAAAAACCTCTAAACCTTTGGAGTATGTGTTTGAACGCCAGCTAAGACATGCCATTCCTACGATCAAGCCCAAATGTGTGATTCCAGACCAAGTGAGTTGCGCTGTTATCAGATATCATAGCAGGCGGATAACAAGCTTGGAGTTCCACCCTACGAAGAATAACATCCTGTTGTCGGGAGATAAGAAAGGACAACTTGGAGTCTGGGATTTTGAGAAGGTTTACGAGAAAGTGGTCTATGAGAACATACACTCTTGTATACTGAACAACATGAAGTTTAATCCTACAAATGATTGTATGGTCTATTCCGCATCCTCGGATGGAACCATTAGTTGTACTGATTTGGAGACTGGAATATCATCCTCTCCGATGAACCTGAATCCTGATGGATGGCATGGGCCAAACACCTGGAAAATGCTTTATGGTATGGATATTCACTATGAGAAAGGTCTTGTGCTCGTGGCCGATAACTTTGGCTTTCTTCACTTGGTCGACATGCGGTCCAATCATAGGAATGGTGATGCAGTTTTGATCCATAAAAAAGGTAGCAAAGTTACTGGTATCCATTGCAATCCAATGCAACCAGACATCCTTTTGACTTGTGGAAATGATCATTATGCGCGCATTTGGGATATGCGTCACTTAGAAGCTGGATCATCCCTCTGTAGCCTTGAGCACAAGCGTGTTGTTAACTCTGCATATTTCTCTCCAATAACTGGAAACAAAATTCTTACTACGTCACAGGACAATCGTCTTCGTATATGGGATTCTATCTTTGGTAATATGGCATCTCCCAGCCGAGAAATTGTGCATAGTCATGATTTCAATCGCCATTTAACACCCTTCAAAGCTGAATGGGATCCAAAGGATCCATTAGAGTCACTCGCTGTTGTTGGCCGCTATATAAGTGAAAATTTTAATGGCACAGCCCTGCATCCTATTGATTTTATAGATACAAGTACAGGGCAGTTGGTAGCAGAAGTCATGGACCCGAACATCACAACCATCAGTCCGGTGAATAAGCTTCATCCACGCGATGATATCCTGGCAACCGGGAGTTCTAGGTCTCTGTTCATTTGGAAGCCAAAGGAAAAATCTGAGACGGTCGAGGAGAAGGACGAAAGCAAAATTGTGGTTTGTGGAAAAGCTGAGAAGAAACGTGGTAAGAGGAAAGGTGATAACATCGATGAATCCGATGATGATGGATTCATTTCCAAGCTCAAGAAGCCAAAATCCAAGCAGACTGAATGGAAATTGTCTCGCTGCTCGACAAAGGATAATCGCTAA

Protein sequence

>Msa0775430

MAPVTRRTSFPKVLIERDSDSEQSSSDEEEEEALEEEEEEEENGVAENEKIEKLEVGFDANRKGKKPITLTLRKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKTPGHTTLNCPHRVTTEHGVVPAPRRKTSKPLEYVFERQLRHAIPTIKPKCVIPDQVSCAVIRYHSRRITSLEFHPTKNNILLSGDKKGQLGVWDFEKVYEKVVYENIHSCILNNMKFNPTNDCMVYSASSDGTISCTDLETGISSSPMNLNPDGWHGPNTWKMLYGMDIHYEKGLVLVADNFGFLHLVDMRSNHRNGDAVLIHKKGSKVTGIHCNPMQPDILLTCGNDHYARIWDMRHLEAGSSLCSLEHKRVVNSAYFSPITGNKILTTSQDNRLRIWDSIFGNMASPSREIVHSHDFNRHLTPFKAEWDPKDPLESLAVVGRYISENFNGTALHPIDFIDTSTGQLVAEVMDPNITTISPVNKLHPRDDILATGSSRSLFIWKPKEKSETVEEKDESKIVVCGKAEKKRGKRKGDNIDESDDDGFISKLKKPKSKQTEWKLSRCSTKDNR*