AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381370 MtrunA17_Chr3g0134981 96.659 449 15 0 1 449 1 449 0.0 895
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381370 AT1G27480.1 59.059 425 164 4 10 431 4 421 0.0 518

Find 95 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTAGGTCGTTTAGGAATT+TGG 0.093532 3_1:+83441394 None:intergenic
AAAATGGATGGTTTAGATTA+TGG 0.209097 3_1:-83442901 Msa0381370:CDS
AAAATTAAATTTGCAGATAA+TGG 0.219301 3_1:+83440537 None:intergenic
AAGAAGAAGGGTTTCGATTA+AGG 0.254545 3_1:+83441282 None:intergenic
GTTGCACTTGATGAAATAAT+TGG 0.291740 3_1:-83440696 Msa0381370:CDS
TTAATCGAAACCCTTCTTCT+TGG 0.309291 3_1:-83441280 Msa0381370:CDS
TCAAATTCTTTAGGTCGTTT+AGG 0.309491 3_1:+83441387 None:intergenic
TTATCAATATCAAATATCTT+AGG 0.316150 3_1:+83441086 None:intergenic
TGTTGGCACTTGAATCTCTA+TGG 0.323866 3_1:-83440794 Msa0381370:CDS
CTTTGTTTCTAGTGAAGCTT+TGG 0.328266 3_1:+83443181 None:intergenic
CTCATGCTCAACTTGATTTG+AGG 0.335869 3_1:-83440653 Msa0381370:CDS
ATACCATGGATCACAAATTA+AGG 0.343972 3_1:+83442940 None:intergenic
TGCGCTAAATAGCTTCTATA+TGG 0.354848 3_1:+83441047 None:intergenic
CTGTGTGAGACAAGTATTAC+TGG 0.359637 3_1:+83441332 None:intergenic
GGTAGAAGGTTTATATTTAG+TGG 0.367636 3_1:+83442961 None:intergenic
GGATCACAAATTAAGGTAGA+AGG 0.371811 3_1:+83442947 None:intergenic
GTTGTTGTTGCTTGTGCTAA+TGG 0.373911 3_1:+83443042 None:intergenic
GTGCGTATGACTTGTATTAT+AGG 0.376436 3_1:-83440924 Msa0381370:CDS
ATATGAGTTGCATATTTAGT+AGG 0.380193 3_1:+83443241 None:intergenic
AAGCTATTTAGCGCATGATA+TGG 0.385056 3_1:-83441039 Msa0381370:CDS
TTTGCATCAGGCAATACTTT+GGG 0.393921 3_1:-83441185 Msa0381370:CDS
GAACAGCTTGGTTACATAGA+TGG 0.397233 3_1:-83441491 Msa0381370:CDS
TAGACCATATCGAAAATCAT+AGG 0.397497 3_1:+83441448 None:intergenic
TACTTGAAAGTTATTAAGAT+TGG 0.398069 3_1:-83440753 Msa0381370:CDS
ATAGATGGTGAAAATCTGTT+TGG 0.403610 3_1:-83441476 Msa0381370:CDS
TTATAGCACTTTCTGCTCCA+TGG 0.410868 3_1:-83441235 Msa0381370:CDS
ATATCAAATATCTTAGGATT+AGG 0.419667 3_1:+83441092 None:intergenic
CTACCTTAATTTGTGATCCA+TGG 0.426147 3_1:-83442943 Msa0381370:CDS
ACTAGCAAAGGGTTTACTAA+TGG 0.433212 3_1:+83441158 None:intergenic
GAGACACGTGTCCCTAGCTT+TGG 0.437492 3_1:-83442773 Msa0381370:CDS
TATAGCACTTTCTGCTCCAT+GGG 0.439917 3_1:-83441234 Msa0381370:CDS
TATTACTGGCTTCCCTCCAT+TGG 0.440820 3_1:+83441346 None:intergenic
CTGTTCTAATGATTCTACTA+AGG 0.448413 3_1:+83441508 None:intergenic
GGTAAAATGCGAGTTTCATA+AGG 0.448911 3_1:+83440975 None:intergenic
AGTTGGTTCCCTCCATTACC+TGG 0.449098 3_1:+83442998 None:intergenic
TTCCTATAAAACAATTCCTC+TGG 0.453117 3_1:+83440885 None:intergenic
AATTTCTTGCGCCAAGAAGA+AGG 0.458486 3_1:+83441269 None:intergenic
GTTCATTTCTTACTAGCAAA+GGG 0.458490 3_1:+83441147 None:intergenic
ATACAAGTCATACGCACTTC+CGG 0.459063 3_1:+83440930 None:intergenic
TTACCTGGTATTAGTATCAC+TGG 0.464879 3_1:+83443013 None:intergenic
CATACGAGAAGCAAAACATT+TGG 0.473192 3_1:+83442847 None:intergenic
TGAAAGTTATTAAGATTGGT+GGG 0.480822 3_1:-83440749 Msa0381370:CDS
TGTTCATTTCTTACTAGCAA+AGG 0.481119 3_1:+83441146 None:intergenic
TTGAAAGTTATTAAGATTGG+TGG 0.484679 3_1:-83440750 Msa0381370:CDS
TACTTGTGTAGGCTTGTCAC+AGG 0.491877 3_1:-83441542 Msa0381370:intron
ATACTTGTCTCACACAGCTT+AGG 0.493585 3_1:-83441326 Msa0381370:CDS
CTTGTCTCACACAGCTTAGG+AGG 0.497176 3_1:-83441323 Msa0381370:CDS
GAGGAAGTAGAACCAAAGCT+AGG 0.502927 3_1:+83442761 None:intergenic
GTAGAATCATTAGAACAGCT+TGG 0.503633 3_1:-83441503 Msa0381370:CDS
GTGATACTAATACCAGGTAA+TGG 0.511981 3_1:-83443010 Msa0381370:CDS
AATTTGGAACCAACTTGAGA+TGG 0.518350 3_1:+83441410 None:intergenic
TGTGAACATGGTGAGCTTGT+TGG 0.520209 3_1:-83440811 Msa0381370:CDS
CCATCACCATAAGAAAACTC+TGG 0.520727 3_1:+83440843 None:intergenic
CTACAATTTCAAAACATCAA+TGG 0.521982 3_1:+83440434 None:intergenic
CGATATGGTCTAGCTGCACC+AGG 0.525375 3_1:-83441437 Msa0381370:CDS
ATGACTTGTATTATAGGAAA+GGG 0.531822 3_1:-83440918 Msa0381370:CDS
GGGACACGTGTCTCCACTCC+AGG 0.536426 3_1:+83442782 None:intergenic
CATCACCATAAGAAAACTCT+GGG 0.540159 3_1:+83440844 None:intergenic
TTCTTGAAAGGAGGATACCA+TGG 0.540741 3_1:+83442926 None:intergenic
CACTAACAGTGTTAATGTGT+TGG 0.541443 3_1:+83443096 None:intergenic
GTATTAGTATCACTGGATTG+AGG 0.543116 3_1:+83443020 None:intergenic
ATTTGGAACCAACTTGAGAT+GGG 0.545508 3_1:+83441411 None:intergenic
ATTTCTTGCGCCAAGAAGAA+GGG 0.548066 3_1:+83441270 None:intergenic
TATGACTTGTATTATAGGAA+AGG 0.548615 3_1:-83440919 Msa0381370:CDS
TAGGATTAGGCAAAAGCCAT+AGG 0.550005 3_1:+83441105 None:intergenic
TAGGCTTGTCACAGGGTACA+TGG 0.553390 3_1:-83441534 Msa0381370:CDS
TCATCAACAGTTCCACCCCA+TGG 0.553701 3_1:+83441218 None:intergenic
GATAGCGAAAATAGATGCAC+CGG 0.558129 3_1:-83440949 Msa0381370:CDS
GAAAGTTATTAAGATTGGTG+GGG 0.564534 3_1:-83440748 Msa0381370:CDS
GAAGCAAAACATTTGGTGAA+AGG 0.565167 3_1:+83442854 None:intergenic
AAAGCTAGTACTTGATGCGA+TGG 0.565432 3_1:-83440570 Msa0381370:three_prime_UTR
TGTTCTAATGATTCTACTAA+GGG 0.567395 3_1:+83441509 None:intergenic
GCACTTTCTGCTCCATGGGG+TGG 0.574507 3_1:-83441230 Msa0381370:CDS
AGGAAGTAGAACCAAAGCTA+GGG 0.574724 3_1:+83442762 None:intergenic
AGACCATATCGAAAATCATA+GGG 0.574772 3_1:+83441449 None:intergenic
GCTTGTGCTAATGGCAACAT+TGG 0.575689 3_1:+83443051 None:intergenic
AGGATTAAGATAAAGAAGAG+AGG 0.580569 3_1:+83442742 None:intergenic
CACATTAACACTGTTAGTGA+TGG 0.588711 3_1:-83443092 Msa0381370:CDS
GAACTTCTGAGAGTAACCTA+TGG 0.593616 3_1:-83441121 Msa0381370:CDS
CCAACTTGAGATGGGTGACC+TGG 0.599702 3_1:+83441419 None:intergenic
ATACTAATACCAGGTAATGG+AGG 0.600946 3_1:-83443007 Msa0381370:CDS
AAAGCAAGCAATTCCAATGG+AGG 0.603247 3_1:-83441359 Msa0381370:CDS
CCAGGTCACCCATCTCAAGT+TGG 0.608401 3_1:-83441419 Msa0381370:CDS
TGGTGACGGAACTGTGAACA+TGG 0.612065 3_1:-83440823 Msa0381370:CDS
ACTTGTGTAGGCTTGTCACA+GGG 0.624634 3_1:-83441541 Msa0381370:intron
AAGCAAGCAATTCCAATGGA+GGG 0.626020 3_1:-83441358 Msa0381370:CDS
TACTAATACCAGGTAATGGA+GGG 0.631997 3_1:-83443006 Msa0381370:CDS
TGTTTCGTTTCACTCAAACA+TGG 0.636137 3_1:+83443208 None:intergenic
ATAGCACTTTCTGCTCCATG+GGG 0.637994 3_1:-83441233 Msa0381370:CDS
AATCCAGTGATACTAATACC+AGG 0.663374 3_1:-83443016 Msa0381370:CDS
AAATAAACTTACTTAAGACG+AGG 0.677738 3_1:+83442722 None:intergenic
TCACCATAAGAAAACTCTGG+GGG 0.705714 3_1:+83440846 None:intergenic
CATTTGATGAGAAATGATCG+TGG 0.720069 3_1:-83440614 Msa0381370:exon
AAAGGGTGTGAAGACTCCAG+AGG 0.728760 3_1:-83440901 Msa0381370:CDS
ATCACCATAAGAAAACTCTG+GGG 0.774332 3_1:+83440845 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATCTTTCAATTATTATA+TGG - chr3_1:83441678-83441697 Msa0381370:intron 10.0%
!! TTATCTTTCAATTATTATAT+GGG - chr3_1:83441679-83441698 Msa0381370:intron 10.0%
!! TTCTATAAAAAGTTATTATA+TGG - chr3_1:83442060-83442079 Msa0381370:intron 10.0%
!! AGGAAATAAAACAAAATTTA+AGG + chr3_1:83440970-83440989 None:intergenic 15.0%
!! TTATCAATATCAAATATCTT+AGG + chr3_1:83442566-83442585 None:intergenic 15.0%
!! AAAATTAAATTTGCAGATAA+TGG + chr3_1:83443115-83443134 None:intergenic 15.0%
!!! TGACATTTTATTATTGATAT+AGG - chr3_1:83443151-83443170 Msa0381370:five_prime_UTR 15.0%
!!! TTTTTTTTTTATCGTGATGA+AGG - chr3_1:83440506-83440525 Msa0381370:three_prime_UTR 20.0%
!! ATTAAAGTTTCACTAAATCA+AGG + chr3_1:83441080-83441099 None:intergenic 20.0%
!!! ATTCATGTTTGTCTTTTTTT+AGG - chr3_1:83441256-83441275 Msa0381370:CDS 20.0%
!!! AATTTTTTTTTGGTGTTAAC+CGG + chr3_1:83441484-83441503 None:intergenic 20.0%
!!! AAAAGTGTCTTTTTTTTCTT+TGG + chr3_1:83441898-83441917 None:intergenic 20.0%
!! TTTACATCTATATAAAGCTA+CGG - chr3_1:83441916-83441935 Msa0381370:intron 20.0%
!! AACATTACTGTATTATTGTA+AGG + chr3_1:83442088-83442107 None:intergenic 20.0%
!!! CTTTTTCTATCAAATTCTTT+AGG + chr3_1:83442274-83442293 None:intergenic 20.0%
!! ATATCAAATATCTTAGGATT+AGG + chr3_1:83442560-83442579 None:intergenic 20.0%
!!! GTTGATTTTCTTAAAGATAT+TGG - chr3_1:83442632-83442651 Msa0381370:intron 20.0%
!! TACTTGAAAGTTATTAAGAT+TGG - chr3_1:83442896-83442915 Msa0381370:CDS 20.0%
! AAAATGGATGGTTTAGATTA+TGG - chr3_1:83440748-83440767 Msa0381370:CDS 25.0%
! GTGCATTAAAAAAATCATCA+AGG + chr3_1:83440848-83440867 None:intergenic 25.0%
! AAATAAACTTACTTAAGACG+AGG + chr3_1:83440930-83440949 None:intergenic 25.0%
!!! TTATTTCCTGTACTTTGTTT+TGG - chr3_1:83440981-83441000 Msa0381370:CDS 25.0%
! ATATTATCAAATTAGTCCGA+AGG + chr3_1:83441294-83441313 None:intergenic 25.0%
! AAAAGATTTAACATTGCTCA+TGG + chr3_1:83441390-83441409 None:intergenic 25.0%
!! ATGAGCAATGTTAAATCTTT+TGG - chr3_1:83441389-83441408 Msa0381370:CDS 25.0%
!! TGAGCAATGTTAAATCTTTT+GGG - chr3_1:83441390-83441409 Msa0381370:CDS 25.0%
!!! ATTTTTTTTTGGTGTTAACC+GGG + chr3_1:83441483-83441502 None:intergenic 25.0%
! GACGAGAAATTATAAATTGT+TGG + chr3_1:83441549-83441568 None:intergenic 25.0%
! CTTTCAATTATTATATGGGA+AGG - chr3_1:83441683-83441702 Msa0381370:intron 25.0%
!!! ATCTAGAAAAGTGTTCATAT+AGG + chr3_1:83441739-83441758 None:intergenic 25.0%
!! CTTTTCTAGATAGATTGAAT+CGG - chr3_1:83441748-83441767 Msa0381370:intron 25.0%
! TGTTCTAATGATTCTACTAA+GGG + chr3_1:83442143-83442162 None:intergenic 25.0%
!! TATGACTTGTATTATAGGAA+AGG - chr3_1:83442730-83442749 Msa0381370:intron 25.0%
!! ATGACTTGTATTATAGGAAA+GGG - chr3_1:83442731-83442750 Msa0381370:intron 25.0%
! TTGAAAGTTATTAAGATTGG+TGG - chr3_1:83442899-83442918 Msa0381370:CDS 25.0%
! TGAAAGTTATTAAGATTGGT+GGG - chr3_1:83442900-83442919 Msa0381370:CDS 25.0%
! CTACAATTTCAAAACATCAA+TGG + chr3_1:83443218-83443237 None:intergenic 25.0%
!!! GTGAGTTTTGATATTAAGAA+TGG - chr3_1:83443237-83443256 Msa0381370:five_prime_UTR 25.0%
GGTAGAAGGTTTATATTTAG+TGG + chr3_1:83440691-83440710 None:intergenic 30.0%
ATACCATGGATCACAAATTA+AGG + chr3_1:83440712-83440731 None:intergenic 30.0%
!! CATCCATTTTTCTTCTTGAA+AGG + chr3_1:83440738-83440757 None:intergenic 30.0%
CTTTCAAGAAGAAAAATGGA+TGG - chr3_1:83440736-83440755 Msa0381370:CDS 30.0%
!!! GATGATTTTTTTAATGCACC+TGG - chr3_1:83440849-83440868 Msa0381370:CDS 30.0%
AGGATTAAGATAAAGAAGAG+AGG + chr3_1:83440910-83440929 None:intergenic 30.0%
AAACTTCCAAAACAAAGTAC+AGG + chr3_1:83440990-83441009 None:intergenic 30.0%
CATTATGAGATCATCCAATT+TGG - chr3_1:83441040-83441059 Msa0381370:CDS 30.0%
ATAATAACTAGAGCTCATGA+TGG + chr3_1:83441163-83441182 None:intergenic 30.0%
! TAGGCTAAGTTTTTAACCTT+CGG - chr3_1:83441275-83441294 Msa0381370:CDS 30.0%
! GAGCAATGTTAAATCTTTTG+GGG - chr3_1:83441391-83441410 Msa0381370:CDS 30.0%
! AGCAATGTTAAATCTTTTGG+GGG - chr3_1:83441392-83441411 Msa0381370:CDS 30.0%
TGCTAAAAGACTATACTGTT+TGG - chr3_1:83441513-83441532 Msa0381370:CDS 30.0%
TAATTTCTCGTCAATTTCGT+AGG - chr3_1:83441557-83441576 Msa0381370:intron 30.0%
TTAGAACCTTGAAATTGTAG+GGG + chr3_1:83441604-83441623 None:intergenic 30.0%
GTTAGAACCTTGAAATTGTA+GGG + chr3_1:83441605-83441624 None:intergenic 30.0%
!!! AGTGTCTTTTTTTTCTTTGG+TGG + chr3_1:83441895-83441914 None:intergenic 30.0%
! TACAGTAATGTTACTTGTGT+AGG - chr3_1:83442096-83442115 Msa0381370:intron 30.0%
CTGTTCTAATGATTCTACTA+AGG + chr3_1:83442144-83442163 None:intergenic 30.0%
ATAGATGGTGAAAATCTGTT+TGG - chr3_1:83442173-83442192 Msa0381370:intron 30.0%
AGACCATATCGAAAATCATA+GGG + chr3_1:83442203-83442222 None:intergenic 30.0%
TAGACCATATCGAAAATCAT+AGG + chr3_1:83442204-83442223 None:intergenic 30.0%
TCAAATTCTTTAGGTCGTTT+AGG + chr3_1:83442265-83442284 None:intergenic 30.0%
!! GAAATGTTTACTTTTGCATC+AGG - chr3_1:83442452-83442471 Msa0381370:intron 30.0%
GTTCATTTCTTACTAGCAAA+GGG + chr3_1:83442505-83442524 None:intergenic 30.0%
TGTTCATTTCTTACTAGCAA+AGG + chr3_1:83442506-83442525 None:intergenic 30.0%
!!! TAAAGATATTGGTTTTCCTG+AGG - chr3_1:83442643-83442662 Msa0381370:intron 30.0%
!!! AAAGATATTGGTTTTCCTGA+GGG - chr3_1:83442644-83442663 Msa0381370:intron 30.0%
TTCCTATAAAACAATTCCTC+TGG + chr3_1:83442767-83442786 None:intergenic 30.0%
!! GAGGAATTGTTTTATAGGAA+TGG - chr3_1:83442767-83442786 Msa0381370:CDS 30.0%
GAAAGTTATTAAGATTGGTG+GGG - chr3_1:83442901-83442920 Msa0381370:CDS 30.0%
GTTGCACTTGATGAAATAAT+TGG - chr3_1:83442953-83442972 Msa0381370:CDS 30.0%
TGTTTCGTTTCACTCAAACA+TGG + chr3_1:83440444-83440463 None:intergenic 35.0%
!! CTTTGTTTCTAGTGAAGCTT+TGG + chr3_1:83440471-83440490 None:intergenic 35.0%
CACTAACAGTGTTAATGTGT+TGG + chr3_1:83440556-83440575 None:intergenic 35.0%
CACATTAACACTGTTAGTGA+TGG - chr3_1:83440557-83440576 Msa0381370:three_prime_UTR 35.0%
GTATTAGTATCACTGGATTG+AGG + chr3_1:83440632-83440651 None:intergenic 35.0%
AATCCAGTGATACTAATACC+AGG - chr3_1:83440633-83440652 Msa0381370:CDS 35.0%
TTACCTGGTATTAGTATCAC+TGG + chr3_1:83440639-83440658 None:intergenic 35.0%
GTGATACTAATACCAGGTAA+TGG - chr3_1:83440639-83440658 Msa0381370:CDS 35.0%
! ATACTAATACCAGGTAATGG+AGG - chr3_1:83440642-83440661 Msa0381370:CDS 35.0%
!! TACTAATACCAGGTAATGGA+GGG - chr3_1:83440643-83440662 Msa0381370:CDS 35.0%
!!! TGGTTAGTTTTGCTTCTAGT+TGG + chr3_1:83440671-83440690 None:intergenic 35.0%
GGATCACAAATTAAGGTAGA+AGG + chr3_1:83440705-83440724 None:intergenic 35.0%
!! CTACCTTAATTTGTGATCCA+TGG - chr3_1:83440706-83440725 Msa0381370:CDS 35.0%
!! CCATTTTTCTTCTTGAAAGG+AGG + chr3_1:83440735-83440754 None:intergenic 35.0%
CCTCCTTTCAAGAAGAAAAA+TGG - chr3_1:83440732-83440751 Msa0381370:CDS 35.0%
! GAAGCAAAACATTTGGTGAA+AGG + chr3_1:83440798-83440817 None:intergenic 35.0%
CATACGAGAAGCAAAACATT+TGG + chr3_1:83440805-83440824 None:intergenic 35.0%
!!! TTTTTTTAATGCACCTGGAG+TGG - chr3_1:83440854-83440873 Msa0381370:CDS 35.0%
AGATCATCCAATTTGGTTGT+GGG - chr3_1:83441047-83441066 Msa0381370:CDS 35.0%
GTTTCACTAAATCAAGGACT+TGG + chr3_1:83441074-83441093 None:intergenic 35.0%
ACAATACCCCTACAATTTCA+AGG - chr3_1:83441595-83441614 Msa0381370:intron 35.0%
GGTTAGAACCTTGAAATTGT+AGG + chr3_1:83441606-83441625 None:intergenic 35.0%
! ACAATTTCAAGGTTCTAACC+TGG - chr3_1:83441606-83441625 Msa0381370:intron 35.0%
TTATCAATGAGTGTATCACC+AGG + chr3_1:83441627-83441646 None:intergenic 35.0%
GACAGTGCATAAAATATGCA+AGG - chr3_1:83441854-83441873 Msa0381370:intron 35.0%
!!! GTCTTTTTTTTCTTTGGTGG+TGG + chr3_1:83441892-83441911 None:intergenic 35.0%
TGCATTAATCAGTGTTCTCA+TGG - chr3_1:83442003-83442022 Msa0381370:intron 35.0%
ATTAATCAGTGTTCTCATGG+CGG - chr3_1:83442006-83442025 Msa0381370:intron 35.0%
GTAGAATCATTAGAACAGCT+TGG - chr3_1:83442146-83442165 Msa0381370:intron 35.0%
! ATTTGGAACCAACTTGAGAT+GGG + chr3_1:83442241-83442260 None:intergenic 35.0%
! AATTTGGAACCAACTTGAGA+TGG + chr3_1:83442242-83442261 None:intergenic 35.0%
CTTTAGGTCGTTTAGGAATT+TGG + chr3_1:83442258-83442277 None:intergenic 35.0%
GAAAAAGCAAGCAATTCCAA+TGG - chr3_1:83442287-83442306 Msa0381370:intron 35.0%
AAGAAGAAGGGTTTCGATTA+AGG + chr3_1:83442370-83442389 None:intergenic 35.0%
TTAATCGAAACCCTTCTTCT+TGG - chr3_1:83442369-83442388 Msa0381370:intron 35.0%
! TTTTGCATCAGGCAATACTT+TGG - chr3_1:83442463-83442482 Msa0381370:intron 35.0%
TTTGCATCAGGCAATACTTT+GGG - chr3_1:83442464-83442483 Msa0381370:intron 35.0%
ACTAGCAAAGGGTTTACTAA+TGG + chr3_1:83442494-83442513 None:intergenic 35.0%
TGCGCTAAATAGCTTCTATA+TGG + chr3_1:83442605-83442624 None:intergenic 35.0%
AAGCTATTTAGCGCATGATA+TGG - chr3_1:83442610-83442629 Msa0381370:intron 35.0%
!!! AAGATATTGGTTTTCCTGAG+GGG - chr3_1:83442645-83442664 Msa0381370:intron 35.0%
GGTAAAATGCGAGTTTCATA+AGG + chr3_1:83442677-83442696 None:intergenic 35.0%
! GCATCTATTTTCGCTATCAA+AGG + chr3_1:83442698-83442717 None:intergenic 35.0%
! GTGCGTATGACTTGTATTAT+AGG - chr3_1:83442725-83442744 Msa0381370:intron 35.0%
!! CTCCAGAGGAATTGTTTTAT+AGG - chr3_1:83442762-83442781 Msa0381370:CDS 35.0%
ATCACCATAAGAAAACTCTG+GGG + chr3_1:83442807-83442826 None:intergenic 35.0%
CATCACCATAAGAAAACTCT+GGG + chr3_1:83442808-83442827 None:intergenic 35.0%
!!! TTTTCTTATGGTGATGGTGA+CGG - chr3_1:83442812-83442831 Msa0381370:CDS 35.0%
CATTTGATGAGAAATGATCG+TGG - chr3_1:83443035-83443054 Msa0381370:CDS 35.0%
! GTTGTTGTTGCTTGTGCTAA+TGG + chr3_1:83440610-83440629 None:intergenic 40.0%
TTCTTGAAAGGAGGATACCA+TGG + chr3_1:83440726-83440745 None:intergenic 40.0%
AGGAAGTAGAACCAAAGCTA+GGG + chr3_1:83440890-83440909 None:intergenic 40.0%
GAGATCATCCAATTTGGTTG+TGG - chr3_1:83441046-83441065 Msa0381370:CDS 40.0%
CGATCGAATTGACAAACTCA+CGG + chr3_1:83441123-83441142 None:intergenic 40.0%
! AGAGCTCATGATGGAAAGTT+TGG + chr3_1:83441154-83441173 None:intergenic 40.0%
TTCAGCTTAACCAAAGATCC+TGG - chr3_1:83441353-83441372 Msa0381370:CDS 40.0%
TAGATTCGAACCAGGATCTT+TGG + chr3_1:83441366-83441385 None:intergenic 40.0%
TACAAAGACTAATCCCTCGA+AGG + chr3_1:83441441-83441460 None:intergenic 40.0%
TGGGAAGGAATATAATGCAG+TGG - chr3_1:83441698-83441717 Msa0381370:intron 40.0%
!!! TTTTTTTCTTTGGTGGTGGC+CGG + chr3_1:83441888-83441907 None:intergenic 40.0%
!! TTCTCATGGCGGACAAAATA+GGG - chr3_1:83442017-83442036 Msa0381370:intron 40.0%
GAACAGCTTGGTTACATAGA+TGG - chr3_1:83442158-83442177 Msa0381370:intron 40.0%
! GCTCCCTATGATTTTCGATA+TGG - chr3_1:83442197-83442216 Msa0381370:intron 40.0%
AAAGCAAGCAATTCCAATGG+AGG - chr3_1:83442290-83442309 Msa0381370:intron 40.0%
AAGCAAGCAATTCCAATGGA+GGG - chr3_1:83442291-83442310 Msa0381370:intron 40.0%
CTGTGTGAGACAAGTATTAC+TGG + chr3_1:83442320-83442339 None:intergenic 40.0%
ATACTTGTCTCACACAGCTT+AGG - chr3_1:83442323-83442342 Msa0381370:intron 40.0%
ATTTCTTGCGCCAAGAAGAA+GGG + chr3_1:83442382-83442401 None:intergenic 40.0%
AATTTCTTGCGCCAAGAAGA+AGG + chr3_1:83442383-83442402 None:intergenic 40.0%
TTATAGCACTTTCTGCTCCA+TGG - chr3_1:83442414-83442433 Msa0381370:intron 40.0%
TATAGCACTTTCTGCTCCAT+GGG - chr3_1:83442415-83442434 Msa0381370:intron 40.0%
! GAACTTCTGAGAGTAACCTA+TGG - chr3_1:83442528-83442547 Msa0381370:intron 40.0%
TAGGATTAGGCAAAAGCCAT+AGG + chr3_1:83442547-83442566 None:intergenic 40.0%
!!! AGATATTGGTTTTCCTGAGG+GGG - chr3_1:83442646-83442665 Msa0381370:intron 40.0%
GATAGCGAAAATAGATGCAC+CGG - chr3_1:83442700-83442719 Msa0381370:intron 40.0%
ATACAAGTCATACGCACTTC+CGG + chr3_1:83442722-83442741 None:intergenic 40.0%
TCACCATAAGAAAACTCTGG+GGG + chr3_1:83442806-83442825 None:intergenic 40.0%
CCATCACCATAAGAAAACTC+TGG + chr3_1:83442809-83442828 None:intergenic 40.0%
! CCAGAGTTTTCTTATGGTGA+TGG - chr3_1:83442806-83442825 Msa0381370:CDS 40.0%
TGTTGGCACTTGAATCTCTA+TGG - chr3_1:83442855-83442874 Msa0381370:CDS 40.0%
! CTCATGCTCAACTTGATTTG+AGG - chr3_1:83442996-83443015 Msa0381370:CDS 40.0%
AAAGCTAGTACTTGATGCGA+TGG - chr3_1:83443079-83443098 Msa0381370:CDS 40.0%
GCTTGTGCTAATGGCAACAT+TGG + chr3_1:83440601-83440620 None:intergenic 45.0%
GAGGAAGTAGAACCAAAGCT+AGG + chr3_1:83440891-83440910 None:intergenic 45.0%
ACTTGGTCCCACAACCAAAT+TGG + chr3_1:83441057-83441076 None:intergenic 45.0%
! GCTCATGATGGAAAGTTTGG+TGG + chr3_1:83441151-83441170 None:intergenic 45.0%
!! GCAAGAGCGTTTGAATGAGA+TGG - chr3_1:83441318-83441337 Msa0381370:CDS 45.0%
CTTTGTATAGTTGCGTGCAG+AGG - chr3_1:83441454-83441473 Msa0381370:CDS 45.0%
AATATGCAAGGTTCGAACCC+CGG - chr3_1:83441866-83441885 Msa0381370:intron 45.0%
!!! TTTTTTCTTTGGTGGTGGCC+GGG + chr3_1:83441887-83441906 None:intergenic 45.0%
!! GTTCTCATGGCGGACAAAAT+AGG - chr3_1:83442016-83442035 Msa0381370:intron 45.0%
TACTTGTGTAGGCTTGTCAC+AGG - chr3_1:83442107-83442126 Msa0381370:intron 45.0%
ACTTGTGTAGGCTTGTCACA+GGG - chr3_1:83442108-83442127 Msa0381370:intron 45.0%
!! TATTACTGGCTTCCCTCCAT+TGG + chr3_1:83442306-83442325 None:intergenic 45.0%
ATAGCACTTTCTGCTCCATG+GGG - chr3_1:83442416-83442435 Msa0381370:intron 45.0%
TCATAAGGATAAACCCCCTC+AGG + chr3_1:83442662-83442681 None:intergenic 45.0%
TGTGAACATGGTGAGCTTGT+TGG - chr3_1:83442838-83442857 Msa0381370:CDS 45.0%
!! AAAAAAAATATATAATTACT+GGG + chr3_1:83440494-83440513 None:intergenic 5.0%
!! AAAAAAAAATATATAATTAC+TGG + chr3_1:83440495-83440514 None:intergenic 5.0%
!!! AAATATTTTCAATTTTTTTT+TGG + chr3_1:83441494-83441513 None:intergenic 5.0%
! AGTTGGTTCCCTCCATTACC+TGG + chr3_1:83440654-83440673 None:intergenic 50.0%
CTCATGGCTAGATTCGAACC+AGG + chr3_1:83441374-83441393 None:intergenic 50.0%
GAGAACTTTGCCACCCATTG+CGG - chr3_1:83441414-83441433 Msa0381370:CDS 50.0%
!!! TTTTTCTTTGGTGGTGGCCG+GGG + chr3_1:83441886-83441905 None:intergenic 50.0%
TAGGCTTGTCACAGGGTACA+TGG - chr3_1:83442115-83442134 Msa0381370:intron 50.0%
CTTGTCTCACACAGCTTAGG+AGG - chr3_1:83442326-83442345 Msa0381370:intron 50.0%
TCATCAACAGTTCCACCCCA+TGG + chr3_1:83442434-83442453 None:intergenic 50.0%
! AAAGGGTGTGAAGACTCCAG+AGG - chr3_1:83442748-83442767 Msa0381370:CDS 50.0%
! GAGCCCCCAGAGTTTTCTTA+TGG - chr3_1:83442800-83442819 Msa0381370:CDS 50.0%
!! TGGTGACGGAACTGTGAACA+TGG - chr3_1:83442826-83442845 Msa0381370:CDS 50.0%
GAGACACGTGTCCCTAGCTT+TGG - chr3_1:83440876-83440895 Msa0381370:CDS 55.0%
ATCCCTCGAAGGACCGCAAT+GGG + chr3_1:83441430-83441449 None:intergenic 55.0%
AATCCCTCGAAGGACCGCAA+TGG + chr3_1:83441431-83441450 None:intergenic 55.0%
AGTTGCGTGCAGAGGATACC+CGG - chr3_1:83441462-83441481 Msa0381370:CDS 55.0%
TGAGCCTAGCTCAGTTGGCA+GGG - chr3_1:83441832-83441851 Msa0381370:intron 55.0%
CGATATGGTCTAGCTGCACC+AGG - chr3_1:83442212-83442231 Msa0381370:intron 55.0%
CCAACTTGAGATGGGTGACC+TGG + chr3_1:83442233-83442252 None:intergenic 55.0%
CCAGGTCACCCATCTCAAGT+TGG - chr3_1:83442230-83442249 Msa0381370:intron 55.0%
CACCCATTGCGGTCCTTCGA+GGG - chr3_1:83441425-83441444 Msa0381370:CDS 60.0%
CCAACTGAGCTAGGCTCACG+AGG + chr3_1:83441830-83441849 None:intergenic 60.0%
CCTCGTGAGCCTAGCTCAGT+TGG - chr3_1:83441827-83441846 Msa0381370:intron 60.0%
GTGAGCCTAGCTCAGTTGGC+AGG - chr3_1:83441831-83441850 Msa0381370:intron 60.0%
CTGTCCCTGCCAACTGAGCT+AGG + chr3_1:83441839-83441858 None:intergenic 60.0%
GCACTTTCTGCTCCATGGGG+TGG - chr3_1:83442419-83442438 Msa0381370:intron 60.0%
GGGACACGTGTCTCCACTCC+AGG + chr3_1:83440870-83440889 None:intergenic 65.0%
CCTCGAAGGACCGCAATGGG+TGG + chr3_1:83441427-83441446 None:intergenic 65.0%
CCACCCATTGCGGTCCTTCG+AGG - chr3_1:83441424-83441443 Msa0381370:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83440411 83443260 83440411 ID=Msa0381370;Name=Msa0381370
chr3_1 mRNA 83440411 83443260 83440411 ID=Msa0381370-mRNA-1;Parent=Msa0381370;Name=Msa0381370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111|1|1|1|1|1|2|209|449
chr3_1 exon 83440411 83441553 83440411 ID=Msa0381370-mRNA-1:exon:21466;Parent=Msa0381370-mRNA-1
chr3_1 exon 83442734 83443260 83442734 ID=Msa0381370-mRNA-1:exon:21465;Parent=Msa0381370-mRNA-1
chr3_1 five_prime_UTR 83443150 83443260 83443150 ID=Msa0381370-mRNA-1:five_prime_utr;Parent=Msa0381370-mRNA-1
chr3_1 CDS 83442734 83443149 83442734 ID=Msa0381370-mRNA-1:cds;Parent=Msa0381370-mRNA-1
chr3_1 CDS 83440620 83441553 83440620 ID=Msa0381370-mRNA-1:cds;Parent=Msa0381370-mRNA-1
chr3_1 three_prime_UTR 83440411 83440619 83440411 ID=Msa0381370-mRNA-1:three_prime_utr;Parent=Msa0381370-mRNA-1
Gene Sequence

>Msa0381370

ATGAAGGAACATAGTCTCAAAATTTGCATTACCAACACATTAACACTGTTAGTGATGGTATCATTAATTTGTTGCACCAATGTTGCCATTAGCACAAGCAACAACAACCTCAATCCAGTGATACTAATACCAGGTAATGGAGGGAACCAACTAGAAGCAAAACTAACCACTAAATATAAACCTTCTACCTTAATTTGTGATCCATGGTATCCTCCTTTCAAGAAGAAAAATGGATGGTTTAGATTATGGTTTGACTCAAGTGTCTTACTTGCTCCTTTCACCAAATGTTTTGCTTCTCGTATGACTCTTTATTATGATCAAGACCTTGATGATTTTTTTAATGCACCTGGAGTGGAGACACGTGTCCCTAGCTTTGGTTCTACTTCCTCTCTTCTTTATCTTAATCCTCGTCTTAAGCTTGTCACAGGGTACATGGCGCCCTTAGTAGAATCATTAGAACAGCTTGGTTACATAGATGGTGAAAATCTGTTTGGAGCTCCCTATGATTTTCGATATGGTCTAGCTGCACCAGGTCACCCATCTCAAGTTGGTTCCAAATTCCTAAACGACCTAAAGAATTTGATAGAAAAAGCAAGCAATTCCAATGGAGGGAAGCCAGTAATACTTGTCTCACACAGCTTAGGAGGTTTATTTGTTCTCGAACTCCTTAATCGAAACCCTTCTTCTTGGCGCAAGAAATTTATTAAACATTTTATAGCACTTTCTGCTCCATGGGGTGGAACTGTTGATGAAATGTTTACTTTTGCATCAGGCAATACTTTGGGAGTGCCATTAGTAAACCCTTTGCTAGTAAGAAATGAACAGAGAACTTCTGAGAGTAACCTATGGCTTTTGCCTAATCCTAAGATATTTGATATTGATAAATCTTTAGTTACTACTCCATATAGAAGCTATTTAGCGCATGATATGGTTGATTTTCTTAAAGATATTGGTTTTCCTGAGGGGGTTTATCCTTATGAAACTCGCATTTTACCTTTGATAGCGAAAATAGATGCACCGGAAGTGCGTATGACTTGTATTATAGGAAAGGGTGTGAAGACTCCAGAGGAATTGTTTTATAGGAATGGTGATTTTGACGAGCCCCCAGAGTTTTCTTATGGTGATGGTGACGGAACTGTGAACATGGTGAGCTTGTTGGCACTTGAATCTCTATGGAAAGATGAAAAAAATCAGTACTTGAAAGTTATTAAGATTGGTGGGGTGACTCATACTTCAATATTGAAAGATAAAGTTGCACTTGATGAAATAATTGGTGAGATTAGTAGAATTAATTCTCATGCTCAACTTGATTTGAGGAATATTTCTTTAGCTGCATTTGATGAGAAATGA

Protein sequence

>Msa0381370

MKEHSLKICITNTLTLLVMVSLICCTNVAISTSNNNLNPVILIPGNGGNQLEAKLTTKYKPSTLICDPWYPPFKKKNGWFRLWFDSSVLLAPFTKCFASRMTLYYDQDLDDFFNAPGVETRVPSFGSTSSLLYLNPRLKLVTGYMAPLVESLEQLGYIDGENLFGAPYDFRYGLAAPGHPSQVGSKFLNDLKNLIEKASNSNGGKPVILVSHSLGGLFVLELLNRNPSSWRKKFIKHFIALSAPWGGTVDEMFTFASGNTLGVPLVNPLLVRNEQRTSESNLWLLPNPKIFDIDKSLVTTPYRSYLAHDMVDFLKDIGFPEGVYPYETRILPLIAKIDAPEVRMTCIIGKGVKTPEELFYRNGDFDEPPEFSYGDGDGTVNMVSLLALESLWKDEKNQYLKVIKIGGVTHTSILKDKVALDEIIGEISRINSHAQLDLRNISLAAFDEK*