Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437750 | XP_003613466.1 | 97.342 | 602 | 15 | 1 | 1 | 602 | 1 | 601 | 0.0 | 1226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437750 | sp|B9S2H4|Y232_RICCO | 53.642 | 604 | 248 | 9 | 1 | 600 | 1 | 576 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437750 | G7K6Z2 | 97.342 | 602 | 15 | 1 | 1 | 602 | 1 | 601 | 0.0 | 1226 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0194010 | Msa0437750 | 0.835897 | 1.284418e-56 | -8.615850e-47 |
| Msa0235880 | Msa0437750 | 0.836289 | 1.020800e-56 | -8.615850e-47 |
| Msa0437750 | Msa1040980 | 0.813354 | 2.670107e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437750 | MtrunA17_Chr5g0415151 | 97.342 | 602 | 15 | 1 | 1 | 602 | 1 | 601 | 0.0 | 1226 |
| Msa0437750 | MtrunA17_Chr2g0291711 | 43.045 | 532 | 244 | 14 | 81 | 601 | 63 | 546 | 7.39e-146 | 433 |
| Msa0437750 | MtrunA17_Chr3g0143971 | 39.443 | 431 | 217 | 12 | 178 | 588 | 196 | 602 | 5.26e-87 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437750 | AT1G27200.1 | 53.249 | 554 | 203 | 12 | 65 | 599 | 55 | 571 | 0.0 | 570 |
| Msa0437750 | AT5G40720.2 | 41.516 | 607 | 286 | 14 | 5 | 599 | 2 | 551 | 1.70e-149 | 444 |
| Msa0437750 | AT5G40720.3 | 41.516 | 607 | 286 | 14 | 5 | 599 | 2 | 551 | 1.70e-149 | 444 |
| Msa0437750 | AT5G40720.1 | 41.516 | 607 | 286 | 14 | 5 | 599 | 2 | 551 | 1.70e-149 | 444 |
| Msa0437750 | AT3G27330.1 | 41.356 | 590 | 267 | 16 | 25 | 600 | 27 | 551 | 1.09e-144 | 442 |
| Msa0437750 | AT4G37420.1 | 38.152 | 422 | 219 | 7 | 186 | 599 | 201 | 588 | 1.09e-87 | 284 |
Find 128 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATCAAGGTTATGCTTTA+AGG | 0.143169 | 3_3:-1748508 | Msa0437750:CDS |
| AAGCTAGAGAGGAGTGTAAA+TGG | 0.251244 | 3_3:-1748307 | Msa0437750:CDS |
| AGAACAACTTGTCATAGTTT+TGG | 0.281538 | 3_3:-1748128 | Msa0437750:CDS |
| ATGAGTTTCGTCGTAATAAT+CGG | 0.281984 | 3_3:-1748244 | Msa0437750:CDS |
| ATTGATTTGGGAAGAGGATT+TGG | 0.283721 | 3_3:+1749206 | None:intergenic |
| GTTGAATTCGTTTGAGGAAA+TGG | 0.286544 | 3_3:+1749022 | None:intergenic |
| AAAATAATAAGGTATTGATT+TGG | 0.288516 | 3_3:+1749193 | None:intergenic |
| GGTTTGGGATACTGGCTTAA+AGG | 0.302438 | 3_3:-1747742 | Msa0437750:CDS |
| TTGTGAAAGGGTTGAATCTT+AGG | 0.305694 | 3_3:-1748853 | Msa0437750:CDS |
| AAGCTATTGAACCACCTAAT+TGG | 0.312470 | 3_3:-1747782 | Msa0437750:CDS |
| TTTCAACTCAAGGAGGGATA+TGG | 0.318511 | 3_3:-1747969 | Msa0437750:CDS |
| GAAAACTTCTCAACCCAAAA+TGG | 0.330512 | 3_3:+1748795 | None:intergenic |
| AATGGATTATGTATCATTCT+TGG | 0.335524 | 3_3:-1748484 | Msa0437750:CDS |
| CCTAAACAAGGGGTTACTAT+AGG | 0.337660 | 3_3:-1748083 | Msa0437750:CDS |
| AAATAATAAGGTATTGATTT+GGG | 0.342733 | 3_3:+1749194 | None:intergenic |
| ACCATTACAAGTATCAAGTT+TGG | 0.346761 | 3_3:-1747911 | Msa0437750:CDS |
| GAATCAAGGTTATGCTTTAA+GGG | 0.349048 | 3_3:-1748507 | Msa0437750:CDS |
| TGAGCTTTGTGTTTGTACTA+TGG | 0.352799 | 3_3:-1748534 | Msa0437750:CDS |
| CAAAACCTTAACCTCCAATT+AGG | 0.356908 | 3_3:+1747768 | None:intergenic |
| GTTGTTGACTTGCGGCGTTC+CGG | 0.364096 | 3_3:-1748980 | Msa0437750:CDS |
| AACCACCTAATTGGAGGTTA+AGG | 0.370730 | 3_3:-1747773 | Msa0437750:CDS |
| AGAATCAAACACCTCAATCT+TGG | 0.377651 | 3_3:-1748925 | Msa0437750:CDS |
| TGTACTATGGTTTGGAATCA+AGG | 0.380045 | 3_3:-1748521 | Msa0437750:CDS |
| TTATTACGACGAAACTCATT+AGG | 0.389227 | 3_3:+1748248 | None:intergenic |
| TTAGTAGAAAAGTTTGGCCT+TGG | 0.392267 | 3_3:-1748370 | Msa0437750:CDS |
| CAAGGCATTAACCCTGTTGT+AGG | 0.397822 | 3_3:+1747693 | None:intergenic |
| CACTACCTTCAGGCATGTTA+TGG | 0.399944 | 3_3:+1747943 | None:intergenic |
| GCGTATGAAGCTAGTTTAGA+TGG | 0.402437 | 3_3:-1748893 | Msa0437750:CDS |
| TTGCCTTCTGTGGCTAGGAT+TGG | 0.403108 | 3_3:-1748596 | Msa0437750:CDS |
| GGCTTATTCATCACACTTTG+TGG | 0.403362 | 3_3:+1748692 | None:intergenic |
| CTAAACAAGGGGTTACTATA+GGG | 0.404493 | 3_3:-1748082 | Msa0437750:CDS |
| CCTATAGTAACCCCTTGTTT+AGG | 0.405189 | 3_3:+1748083 | None:intergenic |
| AGCTAGAGAGGAGTGTAAAT+GGG | 0.406710 | 3_3:-1748306 | Msa0437750:CDS |
| GGTAGTAGTAGTGGTGTTCC+TGG | 0.407725 | 3_3:-1748212 | Msa0437750:CDS |
| TTCGTCGTAATAATCGGGTT+GGG | 0.409553 | 3_3:-1748238 | Msa0437750:CDS |
| TCTTGATGTTCATGCTGAAC+CGG | 0.410036 | 3_3:-1749092 | Msa0437750:CDS |
| TTGAATTCGTTTGAGGAAAT+GGG | 0.415517 | 3_3:+1749023 | None:intergenic |
| AGCTCGTGGCGTTCGCGTTA+CGG | 0.415689 | 3_3:-1748663 | Msa0437750:CDS |
| CCATTACAAGTATCAAGTTT+GGG | 0.419582 | 3_3:-1747910 | Msa0437750:CDS |
| TTTGTGTTTGTACTATGGTT+TGG | 0.422451 | 3_3:-1748529 | Msa0437750:CDS |
| TCCTAGCCACAGAAGGCAAA+AGG | 0.430570 | 3_3:+1748600 | None:intergenic |
| ATAGCTTCTGTTCCAAGTCC+TGG | 0.433484 | 3_3:+1747798 | None:intergenic |
| CCTTCTGTGGCTAGGATTGG+TGG | 0.433671 | 3_3:-1748593 | Msa0437750:CDS |
| TTGGTGGTGGAAGTGATTAT+AGG | 0.435940 | 3_3:-1748577 | Msa0437750:CDS |
| TAAGGTATTGATTTGGGAAG+AGG | 0.436897 | 3_3:+1749200 | None:intergenic |
| AAGGTTATGCTTTAAGGGAA+TGG | 0.437599 | 3_3:-1748502 | Msa0437750:CDS |
| GTCATTTGAGTGGGAATTTG+AGG | 0.439286 | 3_3:-1748637 | Msa0437750:CDS |
| AGACTCGCGTCGAGCATATC+CGG | 0.442218 | 3_3:+1748011 | None:intergenic |
| GAATCAAACACCTCAATCTT+GGG | 0.446981 | 3_3:-1748924 | Msa0437750:CDS |
| CACAATGGATTTGTGCCGCT+CGG | 0.448077 | 3_3:+1748037 | None:intergenic |
| AAACACACTCAAGTGATTCA+TGG | 0.448693 | 3_3:+1749152 | None:intergenic |
| GAGATAGTTGAATTCGTTTG+AGG | 0.450180 | 3_3:+1749016 | None:intergenic |
| CTACAACAGGGTTAATGCCT+TGG | 0.452904 | 3_3:-1747692 | Msa0437750:CDS |
| CCCAAACTTGATACTTGTAA+TGG | 0.458376 | 3_3:+1747910 | None:intergenic |
| TGGATTAAGACACAAGAAGC+AGG | 0.470063 | 3_3:-1748350 | Msa0437750:CDS |
| ATTATGTATCATTCTTGGCT+TGG | 0.470928 | 3_3:-1748479 | Msa0437750:CDS |
| AAACAACGGTTCAACTAAAC+CGG | 0.471074 | 3_3:-1749116 | Msa0437750:CDS |
| TTGCGGCGTTCCGGCGAAGT+GGG | 0.472468 | 3_3:-1748971 | Msa0437750:CDS |
| TACAACAGGGTTAATGCCTT+GGG | 0.479325 | 3_3:-1747691 | Msa0437750:CDS |
| CTTGGCTTGGTGTGGAGCGT+TGG | 0.482384 | 3_3:-1748466 | Msa0437750:CDS |
| GCACAAATCCATTGTGCGGC+CGG | 0.489703 | 3_3:-1748030 | Msa0437750:CDS |
| CGTAATAATCGGGTTGGGGA+AGG | 0.490942 | 3_3:-1748233 | Msa0437750:CDS |
| AGAGAGGAGTGTAAATGGGT+TGG | 0.492364 | 3_3:-1748302 | Msa0437750:CDS |
| TGAGTTTCGTCGTAATAATC+GGG | 0.492991 | 3_3:-1748243 | Msa0437750:CDS |
| TTCACTATAGCACTACCTTC+AGG | 0.497597 | 3_3:+1747933 | None:intergenic |
| ACAATGGATTTGTGCCGCTC+GGG | 0.498482 | 3_3:+1748038 | None:intergenic |
| ATAATGTTAGTAGAAAAGTT+TGG | 0.498771 | 3_3:-1748376 | Msa0437750:CDS |
| TCAGCATGAACATCAAGAAC+CGG | 0.499058 | 3_3:+1749097 | None:intergenic |
| AACACACTCAAGTGATTCAT+GGG | 0.499072 | 3_3:+1749153 | None:intergenic |
| GCTTCTTGTGTCTTAATCCA+AGG | 0.499195 | 3_3:+1748353 | None:intergenic |
| TTGCTACTTATGTTGCTGAT+TGG | 0.500984 | 3_3:-1747857 | Msa0437750:CDS |
| ATTAATGATCTTGATTCTGA+AGG | 0.502435 | 3_3:-1748401 | Msa0437750:CDS |
| AGTGATTATAGGAAGAAGAA+TGG | 0.513112 | 3_3:-1748566 | Msa0437750:CDS |
| GGGTTAAAGTTGTTGACTTG+CGG | 0.520309 | 3_3:-1748988 | Msa0437750:CDS |
| AAGGATAGAGCACCAGGACT+TGG | 0.522984 | 3_3:-1747810 | Msa0437750:CDS |
| CAAACGAATTCAACTATCTC+CGG | 0.526628 | 3_3:-1749013 | Msa0437750:CDS |
| GTATCATTCTTGGCTTGGTG+TGG | 0.528785 | 3_3:-1748474 | Msa0437750:CDS |
| GAAGGCAAAAGGGTCCTCAC+TGG | 0.528854 | 3_3:+1748611 | None:intergenic |
| GTTCCGGCGAAGTGGGTCAT+CGG | 0.531613 | 3_3:-1748964 | Msa0437750:CDS |
| CTATTGAACCACCTAATTGG+AGG | 0.535527 | 3_3:-1747779 | Msa0437750:CDS |
| ATAGAGAAGTGATAAAGTAG+AGG | 0.536926 | 3_3:+1749315 | None:intergenic |
| CTTGCGGCGTTCCGGCGAAG+TGG | 0.537943 | 3_3:-1748972 | Msa0437750:CDS |
| TTTCGTCGTAATAATCGGGT+TGG | 0.538170 | 3_3:-1748239 | Msa0437750:CDS |
| CTGTGGCACAAGAGCTTGTG+AGG | 0.538293 | 3_3:-1748724 | Msa0437750:CDS |
| TCGTCGTAATAATCGGGTTG+GGG | 0.539828 | 3_3:-1748237 | Msa0437750:CDS |
| ACTCCGATGACCCACTTCGC+CGG | 0.543819 | 3_3:+1748961 | None:intergenic |
| GGTTCAAAGGATAGAGCACC+AGG | 0.544003 | 3_3:-1747816 | Msa0437750:CDS |
| TAGAGAAGTGATAAAGTAGA+GGG | 0.547645 | 3_3:+1749316 | None:intergenic |
| CCTAGCCACAGAAGGCAAAA+GGG | 0.550021 | 3_3:+1748601 | None:intergenic |
| TTAATGATCTTGATTCTGAA+GGG | 0.553020 | 3_3:-1748400 | Msa0437750:CDS |
| GGATCAAAACAAAGGTTCAA+AGG | 0.556850 | 3_3:-1747829 | Msa0437750:CDS |
| ACTCAAGTGATTCATGGGGT+TGG | 0.561290 | 3_3:+1749158 | None:intergenic |
| TTGAAGAGATAAAGAAAGTG+TGG | 0.567016 | 3_3:+1749231 | None:intergenic |
| TTGTGCTTTGAAAGCTAGAG+AGG | 0.573063 | 3_3:-1748318 | Msa0437750:CDS |
| TAGTGATGATGATATTGAAA+AGG | 0.578001 | 3_3:-1748426 | Msa0437750:CDS |
| AACATCTTCACATATCATCA+AGG | 0.579405 | 3_3:-1749414 | Msa0437750:CDS |
| TGAATTCAAAACCTAAACAA+GGG | 0.582962 | 3_3:-1748094 | Msa0437750:CDS |
| CGAATTCAACTATCTCCGGT+GGG | 0.583201 | 3_3:-1749009 | Msa0437750:CDS |
| TCTGTGGCTAGGATTGGTGG+TGG | 0.584173 | 3_3:-1748590 | Msa0437750:CDS |
| TTACGGTGAGTCATTTGAGT+GGG | 0.590130 | 3_3:-1748646 | Msa0437750:CDS |
| ATGAATTTCGATCTATAGCA+AGG | 0.590801 | 3_3:-1749048 | Msa0437750:CDS |
| TTATGTTGCTGATTGGCAAG+AGG | 0.591089 | 3_3:-1747850 | Msa0437750:CDS |
| TTGAATTCAAAACCTAAACA+AGG | 0.592792 | 3_3:-1748095 | Msa0437750:CDS |
| AACCTTAACCTCCAATTAGG+TGG | 0.595636 | 3_3:+1747771 | None:intergenic |
| GTCAACAACTTTAACCCCAC+CGG | 0.596792 | 3_3:+1748994 | None:intergenic |
| GGATTAAGACACAAGAAGCA+GGG | 0.597457 | 3_3:-1748349 | Msa0437750:CDS |
| ACGAATTCAACTATCTCCGG+TGG | 0.598414 | 3_3:-1749010 | Msa0437750:CDS |
| GATCTCAACGATTTCTCACC+AGG | 0.602583 | 3_3:+1748194 | None:intergenic |
| GAATTCAAAACCTAAACAAG+GGG | 0.602828 | 3_3:-1748093 | Msa0437750:CDS |
| TAGTACAAATGCAGTTTCTG+TGG | 0.603149 | 3_3:-1748741 | Msa0437750:CDS |
| GAGCATATCCGGCCGCACAA+TGG | 0.604550 | 3_3:+1748022 | None:intergenic |
| GCTACTCTATCCCAAGATTG+AGG | 0.606981 | 3_3:+1748914 | None:intergenic |
| CGACGCGAGTCTTCTGAATG+TGG | 0.611346 | 3_3:-1748000 | Msa0437750:CDS |
| GCATCGAAAATTCGTCGGAT+CGG | 0.614574 | 3_3:+1748817 | None:intergenic |
| CCACCAATCCTAGCCACAGA+AGG | 0.620135 | 3_3:+1748593 | None:intergenic |
| TGAGAAATCGTTGAGATCGA+TGG | 0.636518 | 3_3:-1748189 | Msa0437750:CDS |
| GTTGGGGAAGGTAGTAGTAG+TGG | 0.641024 | 3_3:-1748221 | Msa0437750:CDS |
| TATTATACTCTAGAAAACAA+CGG | 0.642637 | 3_3:-1749130 | Msa0437750:CDS |
| AAATGGCATCGAAAATTCGT+CGG | 0.644871 | 3_3:+1748812 | None:intergenic |
| AGCGGCACAAATCCATTGTG+CGG | 0.645141 | 3_3:-1748034 | Msa0437750:CDS |
| TGGCAAGAGGATCAAAACAA+AGG | 0.651272 | 3_3:-1747837 | Msa0437750:CDS |
| GGTTACCATAACATGCCTGA+AGG | 0.653780 | 3_3:-1747948 | Msa0437750:CDS |
| GTCGGATCGGAGATCTTATG+CGG | 0.666587 | 3_3:+1748830 | None:intergenic |
| GAATTCAACTATCTCCGGTG+GGG | 0.682362 | 3_3:-1749008 | Msa0437750:CDS |
| GGAATTTGAGGCATCCAGTG+AGG | 0.691202 | 3_3:-1748625 | Msa0437750:CDS |
| GTTACGGTGAGTCATTTGAG+TGG | 0.692487 | 3_3:-1748647 | Msa0437750:CDS |
| ACACACTCAAGTGATTCATG+GGG | 0.739717 | 3_3:+1749154 | None:intergenic |
| GTAGACTTCAGAGTCCCGAG+CGG | 0.798819 | 3_3:-1748052 | Msa0437750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTGTTGAAAATAATA+AGG | + | chr3_3:1747955-1747974 | None:intergenic | 10.0% |
| !!! | TTATTTTGTTGAAAATAATA+AGG | + | chr3_3:1747955-1747974 | None:intergenic | 10.0% |
| !!! | AAATAATAAGGTATTGATTT+GGG | + | chr3_3:1747943-1747962 | None:intergenic | 15.0% |
| !!! | AAAATAATAAGGTATTGATT+TGG | + | chr3_3:1747944-1747963 | None:intergenic | 15.0% |
| !!! | AAATAATAAGGTATTGATTT+GGG | + | chr3_3:1747943-1747962 | None:intergenic | 15.0% |
| !!! | AAAATAATAAGGTATTGATT+TGG | + | chr3_3:1747944-1747963 | None:intergenic | 15.0% |
| !!! | ATTTTCCTATCAAATTATCA+TGG | - | chr3_3:1747779-1747798 | Msa0437750:CDS | 20.0% |
| !! | AAAAACCATGATAATTTGAT+AGG | + | chr3_3:1747787-1747806 | None:intergenic | 20.0% |
| !!! | TATTATACTCTAGAAAACAA+CGG | - | chr3_3:1748004-1748023 | Msa0437750:CDS | 20.0% |
| !! | ATAATGTTAGTAGAAAAGTT+TGG | - | chr3_3:1748758-1748777 | Msa0437750:CDS | 20.0% |
| !!! | ATTTTCCTATCAAATTATCA+TGG | - | chr3_3:1747779-1747798 | Msa0437750:CDS | 20.0% |
| !! | AAAAACCATGATAATTTGAT+AGG | + | chr3_3:1747787-1747806 | None:intergenic | 20.0% |
| !!! | TATTATACTCTAGAAAACAA+CGG | - | chr3_3:1748004-1748023 | Msa0437750:CDS | 20.0% |
| !! | ATAATGTTAGTAGAAAAGTT+TGG | - | chr3_3:1748758-1748777 | Msa0437750:CDS | 20.0% |
| ! | TAAAAATCCATAGACAAAAC+CGG | + | chr3_3:1748064-1748083 | None:intergenic | 25.0% |
| !! | TTGAGAAGTTTTCATAAAGA+TGG | - | chr3_3:1748349-1748368 | Msa0437750:CDS | 25.0% |
| !!! | AATGGATTATGTATCATTCT+TGG | - | chr3_3:1748650-1748669 | Msa0437750:CDS | 25.0% |
| !! | TAGTGATGATGATATTGAAA+AGG | - | chr3_3:1748708-1748727 | Msa0437750:CDS | 25.0% |
| ! | ATTAATGATCTTGATTCTGA+AGG | - | chr3_3:1748733-1748752 | Msa0437750:CDS | 25.0% |
| ! | TTAATGATCTTGATTCTGAA+GGG | - | chr3_3:1748734-1748753 | Msa0437750:CDS | 25.0% |
| ! | TTGAATTCAAAACCTAAACA+AGG | - | chr3_3:1749039-1749058 | Msa0437750:CDS | 25.0% |
| ! | TGAATTCAAAACCTAAACAA+GGG | - | chr3_3:1749040-1749059 | Msa0437750:CDS | 25.0% |
| ! | TAAAAATCCATAGACAAAAC+CGG | + | chr3_3:1748064-1748083 | None:intergenic | 25.0% |
| !! | TTGAGAAGTTTTCATAAAGA+TGG | - | chr3_3:1748349-1748368 | Msa0437750:CDS | 25.0% |
| !!! | AATGGATTATGTATCATTCT+TGG | - | chr3_3:1748650-1748669 | Msa0437750:CDS | 25.0% |
| !! | TAGTGATGATGATATTGAAA+AGG | - | chr3_3:1748708-1748727 | Msa0437750:CDS | 25.0% |
| ! | ATTAATGATCTTGATTCTGA+AGG | - | chr3_3:1748733-1748752 | Msa0437750:CDS | 25.0% |
| ! | TTAATGATCTTGATTCTGAA+GGG | - | chr3_3:1748734-1748753 | Msa0437750:CDS | 25.0% |
| ! | TTGAATTCAAAACCTAAACA+AGG | - | chr3_3:1749039-1749058 | Msa0437750:CDS | 25.0% |
| ! | TGAATTCAAAACCTAAACAA+GGG | - | chr3_3:1749040-1749059 | Msa0437750:CDS | 25.0% |
| ! | GATATGTGAAGATGTTTTGT+TGG | + | chr3_3:1747716-1747735 | None:intergenic | 30.0% |
| AACATCTTCACATATCATCA+AGG | - | chr3_3:1747720-1747739 | Msa0437750:CDS | 30.0% | |
| TAGAGAAGTGATAAAGTAGA+GGG | + | chr3_3:1747821-1747840 | None:intergenic | 30.0% | |
| ATAGAGAAGTGATAAAGTAG+AGG | + | chr3_3:1747822-1747841 | None:intergenic | 30.0% | |
| ! | TTTTTGTAGAAGGTTGAAGA+GGG | + | chr3_3:1747871-1747890 | None:intergenic | 30.0% |
| ! | TTTGATGTGGTTTTTGTAGA+AGG | + | chr3_3:1747881-1747900 | None:intergenic | 30.0% |
| TTGAAGAGATAAAGAAAGTG+TGG | + | chr3_3:1747906-1747925 | None:intergenic | 30.0% | |
| ATGAATTTCGATCTATAGCA+AGG | - | chr3_3:1748086-1748105 | Msa0437750:CDS | 30.0% | |
| TTGAATTCGTTTGAGGAAAT+GGG | + | chr3_3:1748114-1748133 | None:intergenic | 30.0% | |
| !!! | ACTGTTGTTGTTTTTGTGAA+AGG | - | chr3_3:1748268-1748287 | Msa0437750:CDS | 30.0% |
| !!! | CTGTTGTTGTTTTTGTGAAA+GGG | - | chr3_3:1748269-1748288 | Msa0437750:CDS | 30.0% |
| AGTGATTATAGGAAGAAGAA+TGG | - | chr3_3:1748568-1748587 | Msa0437750:CDS | 30.0% | |
| TTTGTGTTTGTACTATGGTT+TGG | - | chr3_3:1748605-1748624 | Msa0437750:CDS | 30.0% | |
| GAATCAAGGTTATGCTTTAA+GGG | - | chr3_3:1748627-1748646 | Msa0437750:CDS | 30.0% | |
| ATTATGTATCATTCTTGGCT+TGG | - | chr3_3:1748655-1748674 | Msa0437750:CDS | 30.0% | |
| TTATTACGACGAAACTCATT+AGG | + | chr3_3:1748889-1748908 | None:intergenic | 30.0% | |
| ATGAGTTTCGTCGTAATAAT+CGG | - | chr3_3:1748890-1748909 | Msa0437750:CDS | 30.0% | |
| ! | AGAACAACTTGTCATAGTTT+TGG | - | chr3_3:1749006-1749025 | Msa0437750:CDS | 30.0% |
| GAATTCAAAACCTAAACAAG+GGG | - | chr3_3:1749041-1749060 | Msa0437750:CDS | 30.0% | |
| ACCATTACAAGTATCAAGTT+TGG | - | chr3_3:1749223-1749242 | Msa0437750:CDS | 30.0% | |
| CCATTACAAGTATCAAGTTT+GGG | - | chr3_3:1749224-1749243 | Msa0437750:CDS | 30.0% | |
| ! | TATAGAAAAGACTTTTCCCA+AGG | + | chr3_3:1749462-1749481 | None:intergenic | 30.0% |
| ! | GATATGTGAAGATGTTTTGT+TGG | + | chr3_3:1747716-1747735 | None:intergenic | 30.0% |
| AACATCTTCACATATCATCA+AGG | - | chr3_3:1747720-1747739 | Msa0437750:CDS | 30.0% | |
| TAGAGAAGTGATAAAGTAGA+GGG | + | chr3_3:1747821-1747840 | None:intergenic | 30.0% | |
| ATAGAGAAGTGATAAAGTAG+AGG | + | chr3_3:1747822-1747841 | None:intergenic | 30.0% | |
| ! | TTTTTGTAGAAGGTTGAAGA+GGG | + | chr3_3:1747871-1747890 | None:intergenic | 30.0% |
| ! | TTTGATGTGGTTTTTGTAGA+AGG | + | chr3_3:1747881-1747900 | None:intergenic | 30.0% |
| TTGAAGAGATAAAGAAAGTG+TGG | + | chr3_3:1747906-1747925 | None:intergenic | 30.0% | |
| ATGAATTTCGATCTATAGCA+AGG | - | chr3_3:1748086-1748105 | Msa0437750:CDS | 30.0% | |
| TTGAATTCGTTTGAGGAAAT+GGG | + | chr3_3:1748114-1748133 | None:intergenic | 30.0% | |
| !!! | ACTGTTGTTGTTTTTGTGAA+AGG | - | chr3_3:1748268-1748287 | Msa0437750:CDS | 30.0% |
| !!! | CTGTTGTTGTTTTTGTGAAA+GGG | - | chr3_3:1748269-1748288 | Msa0437750:CDS | 30.0% |
| AGTGATTATAGGAAGAAGAA+TGG | - | chr3_3:1748568-1748587 | Msa0437750:CDS | 30.0% | |
| TTTGTGTTTGTACTATGGTT+TGG | - | chr3_3:1748605-1748624 | Msa0437750:CDS | 30.0% | |
| GAATCAAGGTTATGCTTTAA+GGG | - | chr3_3:1748627-1748646 | Msa0437750:CDS | 30.0% | |
| ATTATGTATCATTCTTGGCT+TGG | - | chr3_3:1748655-1748674 | Msa0437750:CDS | 30.0% | |
| TTATTACGACGAAACTCATT+AGG | + | chr3_3:1748889-1748908 | None:intergenic | 30.0% | |
| ATGAGTTTCGTCGTAATAAT+CGG | - | chr3_3:1748890-1748909 | Msa0437750:CDS | 30.0% | |
| ! | AGAACAACTTGTCATAGTTT+TGG | - | chr3_3:1749006-1749025 | Msa0437750:CDS | 30.0% |
| GAATTCAAAACCTAAACAAG+GGG | - | chr3_3:1749041-1749060 | Msa0437750:CDS | 30.0% | |
| ACCATTACAAGTATCAAGTT+TGG | - | chr3_3:1749223-1749242 | Msa0437750:CDS | 30.0% | |
| CCATTACAAGTATCAAGTTT+GGG | - | chr3_3:1749224-1749243 | Msa0437750:CDS | 30.0% | |
| ! | TATAGAAAAGACTTTTCCCA+AGG | + | chr3_3:1749462-1749481 | None:intergenic | 30.0% |
| ! | GTTTTTGTAGAAGGTTGAAG+AGG | + | chr3_3:1747872-1747891 | None:intergenic | 35.0% |
| !! | AGAAAGTGTGGTTTTTGATG+TGG | + | chr3_3:1747894-1747913 | None:intergenic | 35.0% |
| !! | ATTGATTTGGGAAGAGGATT+TGG | + | chr3_3:1747931-1747950 | None:intergenic | 35.0% |
| !! | TAAGGTATTGATTTGGGAAG+AGG | + | chr3_3:1747937-1747956 | None:intergenic | 35.0% |
| AACACACTCAAGTGATTCAT+GGG | + | chr3_3:1747984-1748003 | None:intergenic | 35.0% | |
| AAACACACTCAAGTGATTCA+TGG | + | chr3_3:1747985-1748004 | None:intergenic | 35.0% | |
| AAACAACGGTTCAACTAAAC+CGG | - | chr3_3:1748018-1748037 | Msa0437750:CDS | 35.0% | |
| GTTGAATTCGTTTGAGGAAA+TGG | + | chr3_3:1748115-1748134 | None:intergenic | 35.0% | |
| GAGATAGTTGAATTCGTTTG+AGG | + | chr3_3:1748121-1748140 | None:intergenic | 35.0% | |
| CAAACGAATTCAACTATCTC+CGG | - | chr3_3:1748121-1748140 | Msa0437750:CDS | 35.0% | |
| AGAATCAAACACCTCAATCT+TGG | - | chr3_3:1748209-1748228 | Msa0437750:CDS | 35.0% | |
| GAATCAAACACCTCAATCTT+GGG | - | chr3_3:1748210-1748229 | Msa0437750:CDS | 35.0% | |
| TTGTGAAAGGGTTGAATCTT+AGG | - | chr3_3:1748281-1748300 | Msa0437750:CDS | 35.0% | |
| ! | AAATGGCATCGAAAATTCGT+CGG | + | chr3_3:1748325-1748344 | None:intergenic | 35.0% |
| !! | ACGAATTTTCGATGCCATTT+TGG | - | chr3_3:1748325-1748344 | Msa0437750:CDS | 35.0% |
| !!! | CGAATTTTCGATGCCATTTT+GGG | - | chr3_3:1748326-1748345 | Msa0437750:CDS | 35.0% |
| GAAAACTTCTCAACCCAAAA+TGG | + | chr3_3:1748342-1748361 | None:intergenic | 35.0% | |
| ! | AGTTTTCATAAAGATGGTGC+TGG | - | chr3_3:1748355-1748374 | Msa0437750:CDS | 35.0% |
| TAGTACAAATGCAGTTTCTG+TGG | - | chr3_3:1748393-1748412 | Msa0437750:CDS | 35.0% | |
| ! | TGAGCTTTGTGTTTGTACTA+TGG | - | chr3_3:1748600-1748619 | Msa0437750:CDS | 35.0% |
| ! | TGTACTATGGTTTGGAATCA+AGG | - | chr3_3:1748613-1748632 | Msa0437750:CDS | 35.0% |
| GGAATCAAGGTTATGCTTTA+AGG | - | chr3_3:1748626-1748645 | Msa0437750:CDS | 35.0% | |
| !! | AAGGTTATGCTTTAAGGGAA+TGG | - | chr3_3:1748632-1748651 | Msa0437750:CDS | 35.0% |
| TTAGTAGAAAAGTTTGGCCT+TGG | - | chr3_3:1748764-1748783 | Msa0437750:CDS | 35.0% | |
| TGAGTTTCGTCGTAATAATC+GGG | - | chr3_3:1748891-1748910 | Msa0437750:CDS | 35.0% | |
| !!! | GGTTTTGAATTCAAACCAGA+AGG | + | chr3_3:1749033-1749052 | None:intergenic | 35.0% |
| CTAAACAAGGGGTTACTATA+GGG | - | chr3_3:1749052-1749071 | Msa0437750:CDS | 35.0% | |
| ! | CATCATTTTCAACTCAAGGA+GGG | - | chr3_3:1749159-1749178 | Msa0437750:CDS | 35.0% |
| CCCAAACTTGATACTTGTAA+TGG | + | chr3_3:1749227-1749246 | None:intergenic | 35.0% | |
| ! | TTGCTACTTATGTTGCTGAT+TGG | - | chr3_3:1749277-1749296 | Msa0437750:CDS | 35.0% |
| GGATCAAAACAAAGGTTCAA+AGG | - | chr3_3:1749305-1749324 | Msa0437750:CDS | 35.0% | |
| AAGCTATTGAACCACCTAAT+TGG | - | chr3_3:1749352-1749371 | Msa0437750:CDS | 35.0% | |
| CAAAACCTTAACCTCCAATT+AGG | + | chr3_3:1749369-1749388 | None:intergenic | 35.0% | |
| !! | GTTAAGGTTTTGTGAGGTTT+GGG | - | chr3_3:1749377-1749396 | Msa0437750:CDS | 35.0% |
| ! | TATTTTGCTCATCCTACAAC+AGG | - | chr3_3:1749429-1749448 | Msa0437750:CDS | 35.0% |
| ! | ATTTTGCTCATCCTACAACA+GGG | - | chr3_3:1749430-1749449 | Msa0437750:CDS | 35.0% |
| ! | GTTTTTGTAGAAGGTTGAAG+AGG | + | chr3_3:1747872-1747891 | None:intergenic | 35.0% |
| !! | AGAAAGTGTGGTTTTTGATG+TGG | + | chr3_3:1747894-1747913 | None:intergenic | 35.0% |
| !! | ATTGATTTGGGAAGAGGATT+TGG | + | chr3_3:1747931-1747950 | None:intergenic | 35.0% |
| !! | TAAGGTATTGATTTGGGAAG+AGG | + | chr3_3:1747937-1747956 | None:intergenic | 35.0% |
| AACACACTCAAGTGATTCAT+GGG | + | chr3_3:1747984-1748003 | None:intergenic | 35.0% | |
| AAACACACTCAAGTGATTCA+TGG | + | chr3_3:1747985-1748004 | None:intergenic | 35.0% | |
| AAACAACGGTTCAACTAAAC+CGG | - | chr3_3:1748018-1748037 | Msa0437750:CDS | 35.0% | |
| GTTGAATTCGTTTGAGGAAA+TGG | + | chr3_3:1748115-1748134 | None:intergenic | 35.0% | |
| GAGATAGTTGAATTCGTTTG+AGG | + | chr3_3:1748121-1748140 | None:intergenic | 35.0% | |
| CAAACGAATTCAACTATCTC+CGG | - | chr3_3:1748121-1748140 | Msa0437750:CDS | 35.0% | |
| AGAATCAAACACCTCAATCT+TGG | - | chr3_3:1748209-1748228 | Msa0437750:CDS | 35.0% | |
| GAATCAAACACCTCAATCTT+GGG | - | chr3_3:1748210-1748229 | Msa0437750:CDS | 35.0% | |
| TTGTGAAAGGGTTGAATCTT+AGG | - | chr3_3:1748281-1748300 | Msa0437750:CDS | 35.0% | |
| ! | AAATGGCATCGAAAATTCGT+CGG | + | chr3_3:1748325-1748344 | None:intergenic | 35.0% |
| !! | ACGAATTTTCGATGCCATTT+TGG | - | chr3_3:1748325-1748344 | Msa0437750:CDS | 35.0% |
| !!! | CGAATTTTCGATGCCATTTT+GGG | - | chr3_3:1748326-1748345 | Msa0437750:CDS | 35.0% |
| GAAAACTTCTCAACCCAAAA+TGG | + | chr3_3:1748342-1748361 | None:intergenic | 35.0% | |
| ! | AGTTTTCATAAAGATGGTGC+TGG | - | chr3_3:1748355-1748374 | Msa0437750:CDS | 35.0% |
| TAGTACAAATGCAGTTTCTG+TGG | - | chr3_3:1748393-1748412 | Msa0437750:CDS | 35.0% | |
| ! | TGAGCTTTGTGTTTGTACTA+TGG | - | chr3_3:1748600-1748619 | Msa0437750:CDS | 35.0% |
| ! | TGTACTATGGTTTGGAATCA+AGG | - | chr3_3:1748613-1748632 | Msa0437750:CDS | 35.0% |
| GGAATCAAGGTTATGCTTTA+AGG | - | chr3_3:1748626-1748645 | Msa0437750:CDS | 35.0% | |
| !! | AAGGTTATGCTTTAAGGGAA+TGG | - | chr3_3:1748632-1748651 | Msa0437750:CDS | 35.0% |
| TTAGTAGAAAAGTTTGGCCT+TGG | - | chr3_3:1748764-1748783 | Msa0437750:CDS | 35.0% | |
| TGAGTTTCGTCGTAATAATC+GGG | - | chr3_3:1748891-1748910 | Msa0437750:CDS | 35.0% | |
| !!! | GGTTTTGAATTCAAACCAGA+AGG | + | chr3_3:1749033-1749052 | None:intergenic | 35.0% |
| CTAAACAAGGGGTTACTATA+GGG | - | chr3_3:1749052-1749071 | Msa0437750:CDS | 35.0% | |
| ! | CATCATTTTCAACTCAAGGA+GGG | - | chr3_3:1749159-1749178 | Msa0437750:CDS | 35.0% |
| CCCAAACTTGATACTTGTAA+TGG | + | chr3_3:1749227-1749246 | None:intergenic | 35.0% | |
| ! | TTGCTACTTATGTTGCTGAT+TGG | - | chr3_3:1749277-1749296 | Msa0437750:CDS | 35.0% |
| GGATCAAAACAAAGGTTCAA+AGG | - | chr3_3:1749305-1749324 | Msa0437750:CDS | 35.0% | |
| AAGCTATTGAACCACCTAAT+TGG | - | chr3_3:1749352-1749371 | Msa0437750:CDS | 35.0% | |
| CAAAACCTTAACCTCCAATT+AGG | + | chr3_3:1749369-1749388 | None:intergenic | 35.0% | |
| !! | GTTAAGGTTTTGTGAGGTTT+GGG | - | chr3_3:1749377-1749396 | Msa0437750:CDS | 35.0% |
| ! | TATTTTGCTCATCCTACAAC+AGG | - | chr3_3:1749429-1749448 | Msa0437750:CDS | 35.0% |
| ! | ATTTTGCTCATCCTACAACA+GGG | - | chr3_3:1749430-1749449 | Msa0437750:CDS | 35.0% |
| AGGTTGAAGAGGGTCAAAAA+TGG | + | chr3_3:1747861-1747880 | None:intergenic | 40.0% | |
| ACACACTCAAGTGATTCATG+GGG | + | chr3_3:1747983-1748002 | None:intergenic | 40.0% | |
| TCAGCATGAACATCAAGAAC+CGG | + | chr3_3:1748040-1748059 | None:intergenic | 40.0% | |
| TCTTGATGTTCATGCTGAAC+CGG | - | chr3_3:1748042-1748061 | Msa0437750:CDS | 40.0% | |
| !! | GGGTTAAAGTTGTTGACTTG+CGG | - | chr3_3:1748146-1748165 | Msa0437750:CDS | 40.0% |
| ! | GCGTATGAAGCTAGTTTAGA+TGG | - | chr3_3:1748241-1748260 | Msa0437750:CDS | 40.0% |
| GGCTTATTCATCACACTTTG+TGG | + | chr3_3:1748445-1748464 | None:intergenic | 40.0% | |
| TTACGGTGAGTCATTTGAGT+GGG | - | chr3_3:1748488-1748507 | Msa0437750:CDS | 40.0% | |
| GTCATTTGAGTGGGAATTTG+AGG | - | chr3_3:1748497-1748516 | Msa0437750:CDS | 40.0% | |
| !! | TTGGTGGTGGAAGTGATTAT+AGG | - | chr3_3:1748557-1748576 | Msa0437750:CDS | 40.0% |
| GCTTCTTGTGTCTTAATCCA+AGG | + | chr3_3:1748784-1748803 | None:intergenic | 40.0% | |
| TGGATTAAGACACAAGAAGC+AGG | - | chr3_3:1748784-1748803 | Msa0437750:CDS | 40.0% | |
| GGATTAAGACACAAGAAGCA+GGG | - | chr3_3:1748785-1748804 | Msa0437750:CDS | 40.0% | |
| !! | TTGTGCTTTGAAAGCTAGAG+AGG | - | chr3_3:1748816-1748835 | Msa0437750:CDS | 40.0% |
| ! | AAGCTAGAGAGGAGTGTAAA+TGG | - | chr3_3:1748827-1748846 | Msa0437750:CDS | 40.0% |
| ! | AGCTAGAGAGGAGTGTAAAT+GGG | - | chr3_3:1748828-1748847 | Msa0437750:CDS | 40.0% |
| TTTCGTCGTAATAATCGGGT+TGG | - | chr3_3:1748895-1748914 | Msa0437750:CDS | 40.0% | |
| TTCGTCGTAATAATCGGGTT+GGG | - | chr3_3:1748896-1748915 | Msa0437750:CDS | 40.0% | |
| TGAGAAATCGTTGAGATCGA+TGG | - | chr3_3:1748945-1748964 | Msa0437750:CDS | 40.0% | |
| !!! | TGTCATAGTTTTGGACCTTC+TGG | - | chr3_3:1749015-1749034 | Msa0437750:CDS | 40.0% |
| ! | CCTATAGTAACCCCTTGTTT+AGG | + | chr3_3:1749054-1749073 | None:intergenic | 40.0% |
| CCTAAACAAGGGGTTACTAT+AGG | - | chr3_3:1749051-1749070 | Msa0437750:CDS | 40.0% | |
| ! | GGTGCATCATTTTCAACTCA+AGG | - | chr3_3:1749155-1749174 | Msa0437750:CDS | 40.0% |
| ! | GCATCATTTTCAACTCAAGG+AGG | - | chr3_3:1749158-1749177 | Msa0437750:CDS | 40.0% |
| TTTCAACTCAAGGAGGGATA+TGG | - | chr3_3:1749165-1749184 | Msa0437750:CDS | 40.0% | |
| TTCACTATAGCACTACCTTC+AGG | + | chr3_3:1749204-1749223 | None:intergenic | 40.0% | |
| ! | TTATGTTGCTGATTGGCAAG+AGG | - | chr3_3:1749284-1749303 | Msa0437750:CDS | 40.0% |
| TGGCAAGAGGATCAAAACAA+AGG | - | chr3_3:1749297-1749316 | Msa0437750:CDS | 40.0% | |
| CTATTGAACCACCTAATTGG+AGG | - | chr3_3:1749355-1749374 | Msa0437750:CDS | 40.0% | |
| AACCACCTAATTGGAGGTTA+AGG | - | chr3_3:1749361-1749380 | Msa0437750:CDS | 40.0% | |
| AACCTTAACCTCCAATTAGG+TGG | + | chr3_3:1749366-1749385 | None:intergenic | 40.0% | |
| !! | TTGGAGGTTAAGGTTTTGTG+AGG | - | chr3_3:1749371-1749390 | Msa0437750:CDS | 40.0% |
| !! | GGTTAAGGTTTTGTGAGGTT+TGG | - | chr3_3:1749376-1749395 | Msa0437750:CDS | 40.0% |
| !! | TTTTGTGAGGTTTGGGATAC+TGG | - | chr3_3:1749384-1749403 | Msa0437750:CDS | 40.0% |
| TACAACAGGGTTAATGCCTT+GGG | - | chr3_3:1749443-1749462 | Msa0437750:CDS | 40.0% | |
| AGGTTGAAGAGGGTCAAAAA+TGG | + | chr3_3:1747861-1747880 | None:intergenic | 40.0% | |
| ACACACTCAAGTGATTCATG+GGG | + | chr3_3:1747983-1748002 | None:intergenic | 40.0% | |
| TCAGCATGAACATCAAGAAC+CGG | + | chr3_3:1748040-1748059 | None:intergenic | 40.0% | |
| TCTTGATGTTCATGCTGAAC+CGG | - | chr3_3:1748042-1748061 | Msa0437750:CDS | 40.0% | |
| !! | GGGTTAAAGTTGTTGACTTG+CGG | - | chr3_3:1748146-1748165 | Msa0437750:CDS | 40.0% |
| ! | GCGTATGAAGCTAGTTTAGA+TGG | - | chr3_3:1748241-1748260 | Msa0437750:CDS | 40.0% |
| GGCTTATTCATCACACTTTG+TGG | + | chr3_3:1748445-1748464 | None:intergenic | 40.0% | |
| TTACGGTGAGTCATTTGAGT+GGG | - | chr3_3:1748488-1748507 | Msa0437750:CDS | 40.0% | |
| GTCATTTGAGTGGGAATTTG+AGG | - | chr3_3:1748497-1748516 | Msa0437750:CDS | 40.0% | |
| !! | TTGGTGGTGGAAGTGATTAT+AGG | - | chr3_3:1748557-1748576 | Msa0437750:CDS | 40.0% |
| GCTTCTTGTGTCTTAATCCA+AGG | + | chr3_3:1748784-1748803 | None:intergenic | 40.0% | |
| TGGATTAAGACACAAGAAGC+AGG | - | chr3_3:1748784-1748803 | Msa0437750:CDS | 40.0% | |
| GGATTAAGACACAAGAAGCA+GGG | - | chr3_3:1748785-1748804 | Msa0437750:CDS | 40.0% | |
| !! | TTGTGCTTTGAAAGCTAGAG+AGG | - | chr3_3:1748816-1748835 | Msa0437750:CDS | 40.0% |
| ! | AAGCTAGAGAGGAGTGTAAA+TGG | - | chr3_3:1748827-1748846 | Msa0437750:CDS | 40.0% |
| ! | AGCTAGAGAGGAGTGTAAAT+GGG | - | chr3_3:1748828-1748847 | Msa0437750:CDS | 40.0% |
| TTTCGTCGTAATAATCGGGT+TGG | - | chr3_3:1748895-1748914 | Msa0437750:CDS | 40.0% | |
| TTCGTCGTAATAATCGGGTT+GGG | - | chr3_3:1748896-1748915 | Msa0437750:CDS | 40.0% | |
| TGAGAAATCGTTGAGATCGA+TGG | - | chr3_3:1748945-1748964 | Msa0437750:CDS | 40.0% | |
| !!! | TGTCATAGTTTTGGACCTTC+TGG | - | chr3_3:1749015-1749034 | Msa0437750:CDS | 40.0% |
| ! | CCTATAGTAACCCCTTGTTT+AGG | + | chr3_3:1749054-1749073 | None:intergenic | 40.0% |
| CCTAAACAAGGGGTTACTAT+AGG | - | chr3_3:1749051-1749070 | Msa0437750:CDS | 40.0% | |
| ! | GGTGCATCATTTTCAACTCA+AGG | - | chr3_3:1749155-1749174 | Msa0437750:CDS | 40.0% |
| ! | GCATCATTTTCAACTCAAGG+AGG | - | chr3_3:1749158-1749177 | Msa0437750:CDS | 40.0% |
| TTTCAACTCAAGGAGGGATA+TGG | - | chr3_3:1749165-1749184 | Msa0437750:CDS | 40.0% | |
| TTCACTATAGCACTACCTTC+AGG | + | chr3_3:1749204-1749223 | None:intergenic | 40.0% | |
| ! | TTATGTTGCTGATTGGCAAG+AGG | - | chr3_3:1749284-1749303 | Msa0437750:CDS | 40.0% |
| TGGCAAGAGGATCAAAACAA+AGG | - | chr3_3:1749297-1749316 | Msa0437750:CDS | 40.0% | |
| CTATTGAACCACCTAATTGG+AGG | - | chr3_3:1749355-1749374 | Msa0437750:CDS | 40.0% | |
| AACCACCTAATTGGAGGTTA+AGG | - | chr3_3:1749361-1749380 | Msa0437750:CDS | 40.0% | |
| AACCTTAACCTCCAATTAGG+TGG | + | chr3_3:1749366-1749385 | None:intergenic | 40.0% | |
| !! | TTGGAGGTTAAGGTTTTGTG+AGG | - | chr3_3:1749371-1749390 | Msa0437750:CDS | 40.0% |
| !! | GGTTAAGGTTTTGTGAGGTT+TGG | - | chr3_3:1749376-1749395 | Msa0437750:CDS | 40.0% |
| !! | TTTTGTGAGGTTTGGGATAC+TGG | - | chr3_3:1749384-1749403 | Msa0437750:CDS | 40.0% |
| TACAACAGGGTTAATGCCTT+GGG | - | chr3_3:1749443-1749462 | Msa0437750:CDS | 40.0% | |
| ACTCAAGTGATTCATGGGGT+TGG | + | chr3_3:1747979-1747998 | None:intergenic | 45.0% | |
| !! | TGCTGAACCGGTTTTGTCTA+TGG | - | chr3_3:1748054-1748073 | Msa0437750:CDS | 45.0% |
| ACGAATTCAACTATCTCCGG+TGG | - | chr3_3:1748124-1748143 | Msa0437750:CDS | 45.0% | |
| CGAATTCAACTATCTCCGGT+GGG | - | chr3_3:1748125-1748144 | Msa0437750:CDS | 45.0% | |
| GAATTCAACTATCTCCGGTG+GGG | - | chr3_3:1748126-1748145 | Msa0437750:CDS | 45.0% | |
| GTCAACAACTTTAACCCCAC+CGG | + | chr3_3:1748143-1748162 | None:intergenic | 45.0% | |
| GCTACTCTATCCCAAGATTG+AGG | + | chr3_3:1748223-1748242 | None:intergenic | 45.0% | |
| GCATCGAAAATTCGTCGGAT+CGG | + | chr3_3:1748320-1748339 | None:intergenic | 45.0% | |
| AATAAGCCCGAAAAAGCTCG+TGG | - | chr3_3:1748457-1748476 | Msa0437750:CDS | 45.0% | |
| GTTACGGTGAGTCATTTGAG+TGG | - | chr3_3:1748487-1748506 | Msa0437750:CDS | 45.0% | |
| !! | GTATCATTCTTGGCTTGGTG+TGG | - | chr3_3:1748660-1748679 | Msa0437750:CDS | 45.0% |
| ! | AGAGAGGAGTGTAAATGGGT+TGG | - | chr3_3:1748832-1748851 | Msa0437750:CDS | 45.0% |
| ! | TCGTCGTAATAATCGGGTTG+GGG | - | chr3_3:1748897-1748916 | Msa0437750:CDS | 45.0% |
| GATCTCAACGATTTCTCACC+AGG | + | chr3_3:1748943-1748962 | None:intergenic | 45.0% | |
| GGTTACCATAACATGCCTGA+AGG | - | chr3_3:1749186-1749205 | Msa0437750:CDS | 45.0% | |
| CACTACCTTCAGGCATGTTA+TGG | + | chr3_3:1749194-1749213 | None:intergenic | 45.0% | |
| ATAGCTTCTGTTCCAAGTCC+TGG | + | chr3_3:1749339-1749358 | None:intergenic | 45.0% | |
| !! | GGTTTGGGATACTGGCTTAA+AGG | - | chr3_3:1749392-1749411 | Msa0437750:CDS | 45.0% |
| ! | CAAGGCATTAACCCTGTTGT+AGG | + | chr3_3:1749444-1749463 | None:intergenic | 45.0% |
| CTACAACAGGGTTAATGCCT+TGG | - | chr3_3:1749442-1749461 | Msa0437750:CDS | 45.0% | |
| ACTCAAGTGATTCATGGGGT+TGG | + | chr3_3:1747979-1747998 | None:intergenic | 45.0% | |
| !! | TGCTGAACCGGTTTTGTCTA+TGG | - | chr3_3:1748054-1748073 | Msa0437750:CDS | 45.0% |
| ACGAATTCAACTATCTCCGG+TGG | - | chr3_3:1748124-1748143 | Msa0437750:CDS | 45.0% | |
| CGAATTCAACTATCTCCGGT+GGG | - | chr3_3:1748125-1748144 | Msa0437750:CDS | 45.0% | |
| GAATTCAACTATCTCCGGTG+GGG | - | chr3_3:1748126-1748145 | Msa0437750:CDS | 45.0% | |
| GTCAACAACTTTAACCCCAC+CGG | + | chr3_3:1748143-1748162 | None:intergenic | 45.0% | |
| GCTACTCTATCCCAAGATTG+AGG | + | chr3_3:1748223-1748242 | None:intergenic | 45.0% | |
| GCATCGAAAATTCGTCGGAT+CGG | + | chr3_3:1748320-1748339 | None:intergenic | 45.0% | |
| AATAAGCCCGAAAAAGCTCG+TGG | - | chr3_3:1748457-1748476 | Msa0437750:CDS | 45.0% | |
| GTTACGGTGAGTCATTTGAG+TGG | - | chr3_3:1748487-1748506 | Msa0437750:CDS | 45.0% | |
| !! | GTATCATTCTTGGCTTGGTG+TGG | - | chr3_3:1748660-1748679 | Msa0437750:CDS | 45.0% |
| ! | AGAGAGGAGTGTAAATGGGT+TGG | - | chr3_3:1748832-1748851 | Msa0437750:CDS | 45.0% |
| ! | TCGTCGTAATAATCGGGTTG+GGG | - | chr3_3:1748897-1748916 | Msa0437750:CDS | 45.0% |
| GATCTCAACGATTTCTCACC+AGG | + | chr3_3:1748943-1748962 | None:intergenic | 45.0% | |
| GGTTACCATAACATGCCTGA+AGG | - | chr3_3:1749186-1749205 | Msa0437750:CDS | 45.0% | |
| CACTACCTTCAGGCATGTTA+TGG | + | chr3_3:1749194-1749213 | None:intergenic | 45.0% | |
| ATAGCTTCTGTTCCAAGTCC+TGG | + | chr3_3:1749339-1749358 | None:intergenic | 45.0% | |
| !! | GGTTTGGGATACTGGCTTAA+AGG | - | chr3_3:1749392-1749411 | Msa0437750:CDS | 45.0% |
| ! | CAAGGCATTAACCCTGTTGT+AGG | + | chr3_3:1749444-1749463 | None:intergenic | 45.0% |
| CTACAACAGGGTTAATGCCT+TGG | - | chr3_3:1749442-1749461 | Msa0437750:CDS | 45.0% | |
| GTCGGATCGGAGATCTTATG+CGG | + | chr3_3:1748307-1748326 | None:intergenic | 50.0% | |
| ! | GGAATTTGAGGCATCCAGTG+AGG | - | chr3_3:1748509-1748528 | Msa0437750:CDS | 50.0% |
| CCTAGCCACAGAAGGCAAAA+GGG | + | chr3_3:1748536-1748555 | None:intergenic | 50.0% | |
| TCCTAGCCACAGAAGGCAAA+AGG | + | chr3_3:1748537-1748556 | None:intergenic | 50.0% | |
| TTGCCTTCTGTGGCTAGGAT+TGG | - | chr3_3:1748538-1748557 | Msa0437750:CDS | 50.0% | |
| !! | CGTAATAATCGGGTTGGGGA+AGG | - | chr3_3:1748901-1748920 | Msa0437750:CDS | 50.0% |
| GTTGGGGAAGGTAGTAGTAG+TGG | - | chr3_3:1748913-1748932 | Msa0437750:CDS | 50.0% | |
| GGTAGTAGTAGTGGTGTTCC+TGG | - | chr3_3:1748922-1748941 | Msa0437750:CDS | 50.0% | |
| ! | ACAATGGATTTGTGCCGCTC+GGG | + | chr3_3:1749099-1749118 | None:intergenic | 50.0% |
| ! | CACAATGGATTTGTGCCGCT+CGG | + | chr3_3:1749100-1749119 | None:intergenic | 50.0% |
| AGCGGCACAAATCCATTGTG+CGG | - | chr3_3:1749100-1749119 | Msa0437750:CDS | 50.0% | |
| ! | GGTTCAAAGGATAGAGCACC+AGG | - | chr3_3:1749318-1749337 | Msa0437750:CDS | 50.0% |
| ! | AAGGATAGAGCACCAGGACT+TGG | - | chr3_3:1749324-1749343 | Msa0437750:CDS | 50.0% |
| GTCGGATCGGAGATCTTATG+CGG | + | chr3_3:1748307-1748326 | None:intergenic | 50.0% | |
| ! | GGAATTTGAGGCATCCAGTG+AGG | - | chr3_3:1748509-1748528 | Msa0437750:CDS | 50.0% |
| CCTAGCCACAGAAGGCAAAA+GGG | + | chr3_3:1748536-1748555 | None:intergenic | 50.0% | |
| TCCTAGCCACAGAAGGCAAA+AGG | + | chr3_3:1748537-1748556 | None:intergenic | 50.0% | |
| TTGCCTTCTGTGGCTAGGAT+TGG | - | chr3_3:1748538-1748557 | Msa0437750:CDS | 50.0% | |
| !! | CGTAATAATCGGGTTGGGGA+AGG | - | chr3_3:1748901-1748920 | Msa0437750:CDS | 50.0% |
| GTTGGGGAAGGTAGTAGTAG+TGG | - | chr3_3:1748913-1748932 | Msa0437750:CDS | 50.0% | |
| GGTAGTAGTAGTGGTGTTCC+TGG | - | chr3_3:1748922-1748941 | Msa0437750:CDS | 50.0% | |
| ! | ACAATGGATTTGTGCCGCTC+GGG | + | chr3_3:1749099-1749118 | None:intergenic | 50.0% |
| ! | CACAATGGATTTGTGCCGCT+CGG | + | chr3_3:1749100-1749119 | None:intergenic | 50.0% |
| AGCGGCACAAATCCATTGTG+CGG | - | chr3_3:1749100-1749119 | Msa0437750:CDS | 50.0% | |
| ! | GGTTCAAAGGATAGAGCACC+AGG | - | chr3_3:1749318-1749337 | Msa0437750:CDS | 50.0% |
| ! | AAGGATAGAGCACCAGGACT+TGG | - | chr3_3:1749324-1749343 | Msa0437750:CDS | 50.0% |
| !! | GTTGTTGACTTGCGGCGTTC+CGG | - | chr3_3:1748154-1748173 | Msa0437750:CDS | 55.0% |
| CTGTGGCACAAGAGCTTGTG+AGG | - | chr3_3:1748410-1748429 | Msa0437750:CDS | 55.0% | |
| !! | CGAACGCCACGAGCTTTTTC+GGG | + | chr3_3:1748466-1748485 | None:intergenic | 55.0% |
| ! | GCGAACGCCACGAGCTTTTT+CGG | + | chr3_3:1748467-1748486 | None:intergenic | 55.0% |
| GAAGGCAAAAGGGTCCTCAC+TGG | + | chr3_3:1748526-1748545 | None:intergenic | 55.0% | |
| ! | GAGGACCCTTTTGCCTTCTG+TGG | - | chr3_3:1748528-1748547 | Msa0437750:CDS | 55.0% |
| ! | CCCTTTTGCCTTCTGTGGCT+AGG | - | chr3_3:1748533-1748552 | Msa0437750:CDS | 55.0% |
| CCACCAATCCTAGCCACAGA+AGG | + | chr3_3:1748544-1748563 | None:intergenic | 55.0% | |
| CCTTCTGTGGCTAGGATTGG+TGG | - | chr3_3:1748541-1748560 | Msa0437750:CDS | 55.0% | |
| ! | TCTGTGGCTAGGATTGGTGG+TGG | - | chr3_3:1748544-1748563 | Msa0437750:CDS | 55.0% |
| GTAGACTTCAGAGTCCCGAG+CGG | - | chr3_3:1749082-1749101 | Msa0437750:CDS | 55.0% | |
| GCACAAATCCATTGTGCGGC+CGG | - | chr3_3:1749104-1749123 | Msa0437750:CDS | 55.0% | |
| AGACTCGCGTCGAGCATATC+CGG | + | chr3_3:1749126-1749145 | None:intergenic | 55.0% | |
| CGACGCGAGTCTTCTGAATG+TGG | - | chr3_3:1749134-1749153 | Msa0437750:CDS | 55.0% | |
| !! | GTTGTTGACTTGCGGCGTTC+CGG | - | chr3_3:1748154-1748173 | Msa0437750:CDS | 55.0% |
| CTGTGGCACAAGAGCTTGTG+AGG | - | chr3_3:1748410-1748429 | Msa0437750:CDS | 55.0% | |
| !! | CGAACGCCACGAGCTTTTTC+GGG | + | chr3_3:1748466-1748485 | None:intergenic | 55.0% |
| ! | GCGAACGCCACGAGCTTTTT+CGG | + | chr3_3:1748467-1748486 | None:intergenic | 55.0% |
| GAAGGCAAAAGGGTCCTCAC+TGG | + | chr3_3:1748526-1748545 | None:intergenic | 55.0% | |
| ! | GAGGACCCTTTTGCCTTCTG+TGG | - | chr3_3:1748528-1748547 | Msa0437750:CDS | 55.0% |
| ! | CCCTTTTGCCTTCTGTGGCT+AGG | - | chr3_3:1748533-1748552 | Msa0437750:CDS | 55.0% |
| CCACCAATCCTAGCCACAGA+AGG | + | chr3_3:1748544-1748563 | None:intergenic | 55.0% | |
| CCTTCTGTGGCTAGGATTGG+TGG | - | chr3_3:1748541-1748560 | Msa0437750:CDS | 55.0% | |
| ! | TCTGTGGCTAGGATTGGTGG+TGG | - | chr3_3:1748544-1748563 | Msa0437750:CDS | 55.0% |
| GTAGACTTCAGAGTCCCGAG+CGG | - | chr3_3:1749082-1749101 | Msa0437750:CDS | 55.0% | |
| GCACAAATCCATTGTGCGGC+CGG | - | chr3_3:1749104-1749123 | Msa0437750:CDS | 55.0% | |
| AGACTCGCGTCGAGCATATC+CGG | + | chr3_3:1749126-1749145 | None:intergenic | 55.0% | |
| CGACGCGAGTCTTCTGAATG+TGG | - | chr3_3:1749134-1749153 | Msa0437750:CDS | 55.0% | |
| GTTCCGGCGAAGTGGGTCAT+CGG | - | chr3_3:1748170-1748189 | Msa0437750:CDS | 60.0% | |
| ACTCCGATGACCCACTTCGC+CGG | + | chr3_3:1748176-1748195 | None:intergenic | 60.0% | |
| AGCTCGTGGCGTTCGCGTTA+CGG | - | chr3_3:1748471-1748490 | Msa0437750:CDS | 60.0% | |
| !! | CTTGGCTTGGTGTGGAGCGT+TGG | - | chr3_3:1748668-1748687 | Msa0437750:CDS | 60.0% |
| GAGCATATCCGGCCGCACAA+TGG | + | chr3_3:1749115-1749134 | None:intergenic | 60.0% | |
| GTTCCGGCGAAGTGGGTCAT+CGG | - | chr3_3:1748170-1748189 | Msa0437750:CDS | 60.0% | |
| ACTCCGATGACCCACTTCGC+CGG | + | chr3_3:1748176-1748195 | None:intergenic | 60.0% | |
| AGCTCGTGGCGTTCGCGTTA+CGG | - | chr3_3:1748471-1748490 | Msa0437750:CDS | 60.0% | |
| !! | CTTGGCTTGGTGTGGAGCGT+TGG | - | chr3_3:1748668-1748687 | Msa0437750:CDS | 60.0% |
| GAGCATATCCGGCCGCACAA+TGG | + | chr3_3:1749115-1749134 | None:intergenic | 60.0% | |
| TTGCGGCGTTCCGGCGAAGT+GGG | - | chr3_3:1748163-1748182 | Msa0437750:CDS | 65.0% | |
| TTGCGGCGTTCCGGCGAAGT+GGG | - | chr3_3:1748163-1748182 | Msa0437750:CDS | 65.0% | |
| CTTGCGGCGTTCCGGCGAAG+TGG | - | chr3_3:1748162-1748181 | Msa0437750:CDS | 70.0% | |
| CTTGCGGCGTTCCGGCGAAG+TGG | - | chr3_3:1748162-1748181 | Msa0437750:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 1747674 | 1749482 | 1747674 | ID=Msa0437750;Name=Msa0437750 |
| chr3_3 | mRNA | 1747674 | 1749482 | 1747674 | ID=Msa0437750-mRNA-1;Parent=Msa0437750;Name=Msa0437750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|602 |
| chr3_3 | exon | 1747674 | 1749482 | 1747674 | ID=Msa0437750-mRNA-1:exon:296;Parent=Msa0437750-mRNA-1 |
| chr3_3 | CDS | 1747674 | 1749482 | 1747674 | ID=Msa0437750-mRNA-1:cds;Parent=Msa0437750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
