Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040980 | XP_013450269.1 | 93.132 | 859 | 58 | 1 | 1 | 858 | 1 | 859 | 0.0 | 1656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040980 | sp|Q93XK2|STSYN_PEA | 85.681 | 859 | 116 | 2 | 1 | 858 | 1 | 853 | 0.0 | 1524 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040980 | A0A072U3J2 | 93.132 | 859 | 58 | 1 | 1 | 858 | 1 | 859 | 0.0 | 1656 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa1040980 | 0.804423 | 2.175751e-49 | -8.615850e-47 |
| Msa0028620 | Msa1040980 | 0.809362 | 1.964868e-50 | -8.615850e-47 |
| Msa0045550 | Msa1040980 | 0.801939 | 7.105631e-49 | -8.615850e-47 |
| Msa0046560 | Msa1040980 | 0.936673 | 1.190800e-97 | -8.615850e-47 |
| Msa0053860 | Msa1040980 | 0.806137 | 9.518074e-50 | -8.615850e-47 |
| Msa0054820 | Msa1040980 | 0.805441 | 1.333122e-49 | -8.615850e-47 |
| Msa0056450 | Msa1040980 | 0.812017 | 5.238736e-51 | -8.615850e-47 |
| Msa0089980 | Msa1040980 | 0.800648 | 1.305834e-48 | -8.615850e-47 |
| Msa0106620 | Msa1040980 | 0.820840 | 5.545439e-53 | -8.615850e-47 |
| Msa0106710 | Msa1040980 | 0.826188 | 3.111368e-54 | -8.615850e-47 |
| Msa0116790 | Msa1040980 | 0.816857 | 4.454108e-52 | -8.615850e-47 |
| Msa0613340 | Msa1040980 | 0.801587 | 8.394429e-49 | -8.615850e-47 |
| Msa0616550 | Msa1040980 | 0.809447 | 1.883933e-50 | -8.615850e-47 |
| Msa0626270 | Msa1040980 | 0.817826 | 2.696168e-52 | -8.615850e-47 |
| Msa0626690 | Msa1040980 | 0.810751 | 9.864288e-51 | -8.615850e-47 |
| Msa0638360 | Msa1040980 | 0.808222 | 3.443896e-50 | -8.615850e-47 |
| Msa0640940 | Msa1040980 | 0.843725 | 1.174612e-58 | -8.615850e-47 |
| Msa0641730 | Msa1040980 | 0.812317 | 4.505234e-51 | -8.615850e-47 |
| Msa0651560 | Msa1040980 | 0.815968 | 7.043354e-52 | -8.615850e-47 |
| Msa0656000 | Msa1040980 | 0.816251 | 6.089964e-52 | -8.615850e-47 |
| Msa0661320 | Msa1040980 | 0.817993 | 2.471209e-52 | -8.615850e-47 |
| Msa0663230 | Msa1040980 | 0.804277 | 2.333717e-49 | -8.615850e-47 |
| Msa0664540 | Msa1040980 | 0.815164 | 1.063419e-51 | -8.615850e-47 |
| Msa0679360 | Msa1040980 | 0.834371 | 3.115214e-56 | -8.615850e-47 |
| Msa0689760 | Msa1040980 | 0.826328 | 2.881875e-54 | -8.615850e-47 |
| Msa0696850 | Msa1040980 | 0.859134 | 5.103275e-63 | -8.615850e-47 |
| Msa0696860 | Msa1040980 | 0.818827 | 1.599535e-52 | -8.615850e-47 |
| Msa0698100 | Msa1040980 | 0.847591 | 1.049426e-59 | -8.615850e-47 |
| Msa0698440 | Msa1040980 | 0.809630 | 1.720813e-50 | -8.615850e-47 |
| Msa0699880 | Msa1040980 | 0.809611 | 1.736662e-50 | -8.615850e-47 |
| Msa0709120 | Msa1040980 | 0.820219 | 7.699851e-53 | -8.615850e-47 |
| Msa0709160 | Msa1040980 | 0.803535 | 3.328369e-49 | -8.615850e-47 |
| Msa0712260 | Msa1040980 | 0.806125 | 9.576235e-50 | -8.615850e-47 |
| Msa0716860 | Msa1040980 | 0.810738 | 9.926361e-51 | -8.615850e-47 |
| Msa0743870 | Msa1040980 | 0.827138 | 1.846160e-54 | -8.615850e-47 |
| Msa0751260 | Msa1040980 | 0.810858 | 9.353666e-51 | -8.615850e-47 |
| Msa0753370 | Msa1040980 | 0.801455 | 8.932483e-49 | -8.615850e-47 |
| Msa0754770 | Msa1040980 | 0.800595 | 1.338676e-48 | -8.615850e-47 |
| Msa0756380 | Msa1040980 | 0.829487 | 5.009245e-55 | -8.615850e-47 |
| Msa0758250 | Msa1040980 | 0.831675 | 1.459688e-55 | -8.615850e-47 |
| Msa0763890 | Msa1040980 | 0.825442 | 4.676529e-54 | -8.615850e-47 |
| Msa0763920 | Msa1040980 | 0.835963 | 1.235333e-56 | -8.615850e-47 |
| Msa0789560 | Msa1040980 | 0.842505 | 2.481892e-58 | -8.615850e-47 |
| Msa0796630 | Msa1040980 | 0.811445 | 6.976535e-51 | -8.615850e-47 |
| Msa0124320 | Msa1040980 | 0.821108 | 4.810366e-53 | -8.615850e-47 |
| Msa0126790 | Msa1040980 | 0.805291 | 1.433113e-49 | -8.615850e-47 |
| Msa0130720 | Msa1040980 | 0.814815 | 1.271067e-51 | -8.615850e-47 |
| Msa0136630 | Msa1040980 | 0.800032 | 1.742756e-48 | -8.615850e-47 |
| Msa0138210 | Msa1040980 | 0.803653 | 3.145215e-49 | -8.615850e-47 |
| Msa0139670 | Msa1040980 | 0.822244 | 2.627235e-53 | -8.615850e-47 |
| Msa0141400 | Msa1040980 | 0.818695 | 1.714047e-52 | -8.615850e-47 |
| Msa0163040 | Msa1040980 | 0.802947 | 4.404083e-49 | -8.615850e-47 |
| Msa0171870 | Msa1040980 | 0.807763 | 4.311367e-50 | -8.615850e-47 |
| Msa0173800 | Msa1040980 | 0.800401 | 1.466234e-48 | -8.615850e-47 |
| Msa0183420 | Msa1040980 | 0.803686 | 3.096382e-49 | -8.615850e-47 |
| Msa0187830 | Msa1040980 | 0.814281 | 1.668375e-51 | -8.615850e-47 |
| Msa0192640 | Msa1040980 | 0.820374 | 7.094943e-53 | -8.615850e-47 |
| Msa0194010 | Msa1040980 | 0.816696 | 4.840873e-52 | -8.615850e-47 |
| Msa0195100 | Msa1040980 | 0.801782 | 7.654649e-49 | -8.615850e-47 |
| Msa0198300 | Msa1040980 | 0.839788 | 1.284571e-57 | -8.615850e-47 |
| Msa0202800 | Msa1040980 | 0.826665 | 2.395204e-54 | -8.615850e-47 |
| Msa0206830 | Msa1040980 | 0.803957 | 2.719924e-49 | -8.615850e-47 |
| Msa0220730 | Msa1040980 | 0.821791 | 3.346275e-53 | -8.615850e-47 |
| Msa0230320 | Msa1040980 | 0.807915 | 4.002396e-50 | -8.615850e-47 |
| Msa0231190 | Msa1040980 | 0.818908 | 1.533482e-52 | -8.615850e-47 |
| Msa0235880 | Msa1040980 | 0.832041 | 1.185199e-55 | -8.615850e-47 |
| Msa0238030 | Msa1040980 | 0.806345 | 8.606123e-50 | -8.615850e-47 |
| Msa0377440 | Msa1040980 | 0.800552 | 1.365860e-48 | -8.615850e-47 |
| Msa0380600 | Msa1040980 | 0.800978 | 1.118318e-48 | -8.615850e-47 |
| Msa0382370 | Msa1040980 | 0.837841 | 4.096076e-57 | -8.615850e-47 |
| Msa0382490 | Msa1040980 | 0.825203 | 5.327292e-54 | -8.615850e-47 |
| Msa0387810 | Msa1040980 | 0.800793 | 1.219925e-48 | -8.615850e-47 |
| Msa0388650 | Msa1040980 | 0.825138 | 5.518420e-54 | -8.615850e-47 |
| Msa0389770 | Msa1040980 | 0.810181 | 1.309430e-50 | -8.615850e-47 |
| Msa0389910 | Msa1040980 | 0.803611 | 3.210223e-49 | -8.615850e-47 |
| Msa0393430 | Msa1040980 | 0.801463 | 8.898005e-49 | -8.615850e-47 |
| Msa0394260 | Msa1040980 | 0.828372 | 9.325470e-55 | -8.615850e-47 |
| Msa0395980 | Msa1040980 | 0.854608 | 1.098841e-61 | -8.615850e-47 |
| Msa0398200 | Msa1040980 | 0.824116 | 9.608096e-54 | -8.615850e-47 |
| Msa0401560 | Msa1040980 | 0.817497 | 3.198644e-52 | -8.615850e-47 |
| Msa0432160 | Msa1040980 | 0.839396 | 1.625300e-57 | -8.615850e-47 |
| Msa0432670 | Msa1040980 | 0.833686 | 4.624182e-56 | -8.615850e-47 |
| Msa0437750 | Msa1040980 | 0.813354 | 2.670107e-51 | -8.615850e-47 |
| Msa0440510 | Msa1040980 | 0.826544 | 2.558897e-54 | -8.615850e-47 |
| Msa0450400 | Msa1040980 | -0.813166 | 2.937737e-51 | -8.615850e-47 |
| Msa0473980 | Msa1040980 | 0.815465 | 9.115488e-52 | -8.615850e-47 |
| Msa0476680 | Msa1040980 | 0.838233 | 3.247858e-57 | -8.615850e-47 |
| Msa0986510 | Msa1040980 | 0.816173 | 6.337361e-52 | -8.615850e-47 |
| Msa0992580 | Msa1040980 | 0.812905 | 3.351072e-51 | -8.615850e-47 |
| Msa0994910 | Msa1040980 | 0.805652 | 1.203766e-49 | -8.615850e-47 |
| Msa0999680 | Msa1040980 | 0.819205 | 1.312643e-52 | -8.615850e-47 |
| Msa1002960 | Msa1040980 | 0.823843 | 1.113664e-53 | -8.615850e-47 |
| Msa1006010 | Msa1040980 | -0.824710 | 6.962920e-54 | -8.615850e-47 |
| Msa1040980 | Msa1063420 | 0.803797 | 2.936448e-49 | -8.615850e-47 |
| Msa1040980 | Msa1081220 | 0.821939 | 3.091415e-53 | -8.615850e-47 |
| Msa1040980 | Msa1081240 | 0.803748 | 3.006378e-49 | -8.615850e-47 |
| Msa1040980 | Msa1095790 | 0.820296 | 7.393917e-53 | -8.615850e-47 |
| Msa1040980 | Msa1098270 | 0.816077 | 6.660420e-52 | -8.615850e-47 |
| Msa1040980 | Msa1127380 | 0.915232 | 7.516045e-85 | -8.615850e-47 |
| Msa1040980 | Msa1127430 | 0.827838 | 1.254068e-54 | -8.615850e-47 |
| Msa1040980 | Msa1131490 | 0.805217 | 1.485401e-49 | -8.615850e-47 |
| Msa1040980 | Msa1177560 | 0.806680 | 7.313482e-50 | -8.615850e-47 |
| Msa1040980 | Msa1205590 | 0.814502 | 1.491296e-51 | -8.615850e-47 |
| Msa1040980 | Msa1207740 | 0.802507 | 5.428724e-49 | -8.615850e-47 |
| Msa1040980 | Msa1208790 | 0.853283 | 2.647926e-61 | -8.615850e-47 |
| Msa1040980 | Msa1211340 | 0.827974 | 1.163052e-54 | -8.615850e-47 |
| Msa1040980 | Msa1215070 | 0.816967 | 4.207884e-52 | -8.615850e-47 |
| Msa1040980 | Msa1234620 | 0.835660 | 1.474708e-56 | -8.615850e-47 |
| Msa1040980 | Msa1236440 | 0.803957 | 2.720254e-49 | -8.615850e-47 |
| Msa1040980 | Msa1254620 | 0.803677 | 3.109455e-49 | -8.615850e-47 |
| Msa1040980 | Msa1258980 | 0.859748 | 3.335913e-63 | -8.615850e-47 |
| Msa1040980 | Msa1259640 | 0.827523 | 1.492642e-54 | -8.615850e-47 |
| Msa1040980 | Msa1266490 | 0.808056 | 3.736466e-50 | -8.615850e-47 |
| Msa1040980 | Msa1271130 | 0.802146 | 6.443708e-49 | -8.615850e-47 |
| Msa1040980 | Msa1297530 | 0.829626 | 4.632120e-55 | -8.615850e-47 |
| Msa1040980 | Msa1323690 | 0.814125 | 1.806271e-51 | -8.615850e-47 |
| Msa1040980 | Msa1329050 | -0.805096 | 1.574535e-49 | -8.615850e-47 |
| Msa1040980 | Msa1329790 | 0.825546 | 4.420393e-54 | -8.615850e-47 |
| Msa1040980 | Msa1330630 | 0.859347 | 4.404345e-63 | -8.615850e-47 |
| Msa1040980 | Msa1336040 | 0.840359 | 9.118327e-58 | -8.615850e-47 |
| Msa1040980 | Msa1337170 | 0.808401 | 3.153237e-50 | -8.615850e-47 |
| Msa1040980 | Msa1341490 | 0.804826 | 1.792694e-49 | -8.615850e-47 |
| Msa1040980 | Msa1349450 | 0.819020 | 1.445725e-52 | -8.615850e-47 |
| Msa1040980 | Msa1358070 | 0.805051 | 1.609119e-49 | -8.615850e-47 |
| Msa1040980 | Msa1359920 | 0.814198 | 1.740424e-51 | -8.615850e-47 |
| Msa1040980 | Msa1366550 | 0.840544 | 8.156226e-58 | -8.615850e-47 |
| Msa1040980 | Msa1370590 | 0.824305 | 8.674649e-54 | -8.615850e-47 |
| Msa1040980 | Msa1379590 | 0.806311 | 8.748537e-50 | -8.615850e-47 |
| Msa1040980 | Msa1384100 | 0.825850 | 3.742585e-54 | -8.615850e-47 |
| Msa1040980 | Msa1391720 | 0.847753 | 9.475147e-60 | -8.615850e-47 |
| Msa1040980 | Msa1398090 | 0.805884 | 1.076031e-49 | -8.615850e-47 |
| Msa1040980 | Msa1399260 | 0.800434 | 1.443885e-48 | -8.615850e-47 |
| Msa1040980 | Msa1400930 | 0.819119 | 1.372643e-52 | -8.615850e-47 |
| Msa1040980 | Msa1401460 | 0.842342 | 2.742555e-58 | -8.615850e-47 |
| Msa1040980 | Msa1410420 | 0.827409 | 1.589545e-54 | -8.615850e-47 |
| Msa1040980 | Msa1418240 | 0.803040 | 4.214093e-49 | -8.615850e-47 |
| Msa1040980 | Msa1420250 | 0.823984 | 1.031990e-53 | -8.615850e-47 |
| Msa1040980 | Msa1423780 | 0.801903 | 7.229915e-49 | -8.615850e-47 |
| Msa1040980 | Msa1424350 | 0.809754 | 1.618019e-50 | -8.615850e-47 |
| Msa1040980 | Msa1424630 | 0.820102 | 8.190506e-53 | -8.615850e-47 |
| Msa1040980 | Msa1424640 | 0.800919 | 1.149777e-48 | -8.615850e-47 |
| Msa1040980 | Msa1426710 | 0.814733 | 1.325523e-51 | -8.615850e-47 |
| Msa1040980 | Msa1426910 | 0.840687 | 7.485517e-58 | -8.615850e-47 |
| Msa1040980 | Msa1434040 | 0.801226 | 9.949021e-49 | -8.615850e-47 |
| Msa1040980 | Msa1435260 | 0.806831 | 6.795694e-50 | -8.615850e-47 |
| Msa1040980 | Msa1444120 | 0.825751 | 3.951715e-54 | -8.615850e-47 |
| Msa1040980 | Msa1453360 | 0.803199 | 3.907283e-49 | -8.615850e-47 |
| Msa1040980 | Msa1454530 | 0.831311 | 1.793468e-55 | -8.615850e-47 |
| Msa1040980 | Msa1454960 | 0.829999 | 3.758666e-55 | -8.615850e-47 |
| Msa1040980 | Msa1456230 | 0.921008 | 6.200152e-88 | -8.615850e-47 |
| Msa1040980 | Msa1458340 | 0.832127 | 1.128337e-55 | -8.615850e-47 |
| Msa1040980 | Msa1463030 | 0.855394 | 6.496571e-62 | -8.615850e-47 |
| Msa1040980 | Msa1465570 | 0.807831 | 4.170751e-50 | -8.615850e-47 |
| Msa0240650 | Msa1040980 | 0.831135 | 1.981183e-55 | -8.615850e-47 |
| Msa0244970 | Msa1040980 | 0.816736 | 4.741178e-52 | -8.615850e-47 |
| Msa0249310 | Msa1040980 | 0.813111 | 3.019231e-51 | -8.615850e-47 |
| Msa0249550 | Msa1040980 | 0.801874 | 7.329212e-49 | -8.615850e-47 |
| Msa0271790 | Msa1040980 | 0.807343 | 5.295515e-50 | -8.615850e-47 |
| Msa0287790 | Msa1040980 | 0.816719 | 4.784543e-52 | -8.615850e-47 |
| Msa0288120 | Msa1040980 | 0.801545 | 8.559411e-49 | -8.615850e-47 |
| Msa0308630 | Msa1040980 | 0.809395 | 1.933008e-50 | -8.615850e-47 |
| Msa0312910 | Msa1040980 | 0.820247 | 7.586569e-53 | -8.615850e-47 |
| Msa0314000 | Msa1040980 | 0.803366 | 3.608488e-49 | -8.615850e-47 |
| Msa0321690 | Msa1040980 | 0.803143 | 4.011830e-49 | -8.615850e-47 |
| Msa0322900 | Msa1040980 | 0.812640 | 3.829057e-51 | -8.615850e-47 |
| Msa0347950 | Msa1040980 | 0.819213 | 1.307198e-52 | -8.615850e-47 |
| Msa0347990 | Msa1040980 | 0.825068 | 5.733134e-54 | -8.615850e-47 |
| Msa0362890 | Msa1040980 | 0.843343 | 1.485508e-58 | -8.615850e-47 |
| Msa0482940 | Msa1040980 | 0.827056 | 1.931593e-54 | -8.615850e-47 |
| Msa0485240 | Msa1040980 | 0.801146 | 1.033408e-48 | -8.615850e-47 |
| Msa0491000 | Msa1040980 | 0.838358 | 3.016216e-57 | -8.615850e-47 |
| Msa0500400 | Msa1040980 | 0.800520 | 1.386589e-48 | -8.615850e-47 |
| Msa0521010 | Msa1040980 | 0.840386 | 8.974308e-58 | -8.615850e-47 |
| Msa0566350 | Msa1040980 | 0.806579 | 7.679956e-50 | -8.615850e-47 |
| Msa0566750 | Msa1040980 | 0.806038 | 9.988117e-50 | -8.615850e-47 |
| Msa0586680 | Msa1040980 | 0.806845 | 6.748789e-50 | -8.615850e-47 |
| Msa0597770 | Msa1040980 | 0.830057 | 3.638230e-55 | -8.615850e-47 |
| Msa0600450 | Msa1040980 | 0.821895 | 3.164939e-53 | -8.615850e-47 |
| Msa0865970 | Msa1040980 | 0.816996 | 4.146242e-52 | -8.615850e-47 |
| Msa0866070 | Msa1040980 | 0.816226 | 6.167398e-52 | -8.615850e-47 |
| Msa0867980 | Msa1040980 | 0.841591 | 4.331736e-58 | -8.615850e-47 |
| Msa0868160 | Msa1040980 | 0.812451 | 4.211128e-51 | -8.615850e-47 |
| Msa0899970 | Msa1040980 | 0.827687 | 1.363271e-54 | -8.615850e-47 |
| Msa0903710 | Msa1040980 | 0.802598 | 5.200761e-49 | -8.615850e-47 |
| Msa0903780 | Msa1040980 | 0.817867 | 2.639043e-52 | -8.615850e-47 |
| Msa0921420 | Msa1040980 | 0.829235 | 5.765277e-55 | -8.615850e-47 |
| Msa0933760 | Msa1040980 | 0.818270 | 2.140175e-52 | -8.615850e-47 |
| Msa0934140 | Msa1040980 | 0.814881 | 1.229097e-51 | -8.615850e-47 |
| Msa0936390 | Msa1040980 | 0.801696 | 7.971034e-49 | -8.615850e-47 |
| Msa0937430 | Msa1040980 | 0.807411 | 5.122553e-50 | -8.615850e-47 |
| Msa0958030 | Msa1040980 | 0.815047 | 1.129049e-51 | -8.615850e-47 |
| Msa0960390 | Msa1040980 | 0.831728 | 1.415807e-55 | -8.615850e-47 |
| Msa0965080 | Msa1040980 | 0.817251 | 3.632290e-52 | -8.615850e-47 |
| Msa0965290 | Msa1040980 | 0.820198 | 7.787318e-53 | -8.615850e-47 |
| Msa0969330 | Msa1040980 | 0.801527 | 8.632325e-49 | -8.615850e-47 |
| Msa0971650 | Msa1040980 | 0.824993 | 5.971473e-54 | -8.615850e-47 |
| Msa0973280 | Msa1040980 | 0.808602 | 2.856897e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040980 | MtrunA17_Chr7g0267991 | 93.132 | 859 | 58 | 1 | 1 | 858 | 1 | 859 | 0.0 | 1656 |
| Msa1040980 | MtrunA17_Chr8g0380141 | 88.162 | 718 | 77 | 2 | 1 | 718 | 1 | 710 | 0.0 | 1328 |
| Msa1040980 | MtrunA17_Chr1g0201161 | 83.505 | 679 | 100 | 2 | 1 | 675 | 1 | 671 | 0.0 | 1179 |
| Msa1040980 | MtrunA17_Chr1g0201161 | 86.243 | 189 | 26 | 0 | 670 | 858 | 735 | 923 | 5.45e-103 | 340 |
| Msa1040980 | MtrunA17_Chr7g0270181 | 91.304 | 368 | 25 | 1 | 488 | 855 | 1 | 361 | 0.0 | 696 |
| Msa1040980 | MtrunA17_Chr3g0117141 | 42.093 | 860 | 395 | 13 | 1 | 844 | 1 | 773 | 0.0 | 669 |
| Msa1040980 | MtrunA17_Chr6g0449521 | 52.017 | 471 | 216 | 6 | 382 | 844 | 306 | 774 | 8.58e-166 | 501 |
| Msa1040980 | MtrunA17_Chr6g0449521 | 40.597 | 335 | 154 | 6 | 1 | 307 | 1 | 318 | 2.78e-66 | 236 |
| Msa1040980 | MtrunA17_Chr4g0058701 | 51.168 | 471 | 219 | 7 | 383 | 844 | 297 | 765 | 4.16e-163 | 494 |
| Msa1040980 | MtrunA17_Chr4g0058701 | 43.396 | 318 | 159 | 7 | 1 | 307 | 1 | 308 | 1.82e-68 | 242 |
| Msa1040980 | MtrunA17_Chr5g0447201 | 39.498 | 438 | 246 | 7 | 388 | 819 | 296 | 720 | 4.62e-95 | 315 |
| Msa1040980 | MtrunA17_Chr5g0447201 | 33.603 | 247 | 140 | 3 | 71 | 299 | 42 | 282 | 1.37e-38 | 154 |
| Msa1040980 | MtrunA17_Chr4g0064311 | 37.292 | 480 | 282 | 7 | 367 | 838 | 345 | 813 | 6.84e-95 | 316 |
| Msa1040980 | MtrunA17_Chr4g0064311 | 34.932 | 292 | 151 | 6 | 20 | 302 | 106 | 367 | 7.34e-44 | 171 |
| Msa1040980 | MtrunA17_Chr7g0257731 | 36.779 | 503 | 277 | 8 | 363 | 839 | 107 | 594 | 2.89e-94 | 308 |
| Msa1040980 | MtrunA17_Chr7g0257731 | 40.602 | 133 | 75 | 1 | 178 | 310 | 1 | 129 | 1.94e-24 | 108 |
| Msa1040980 | MtrunA17_Chr3g0116641 | 38.149 | 443 | 253 | 7 | 406 | 840 | 306 | 735 | 4.05e-92 | 306 |
| Msa1040980 | MtrunA17_Chr3g0116641 | 32.534 | 292 | 149 | 4 | 27 | 298 | 16 | 279 | 3.16e-40 | 159 |
| Msa1040980 | MtrunA17_Chr1g0173521 | 38.876 | 445 | 253 | 7 | 406 | 843 | 350 | 782 | 1.35e-89 | 301 |
| Msa1040980 | MtrunA17_Chr1g0173521 | 36.910 | 233 | 139 | 2 | 71 | 299 | 99 | 327 | 2.99e-41 | 162 |
| Msa1040980 | MtrunA17_Chr8g0380131 | 89.744 | 117 | 12 | 0 | 742 | 858 | 1 | 117 | 1.26e-67 | 220 |
| Msa1040980 | MtrunA17_Chr5g0427081 | 33.566 | 143 | 92 | 2 | 621 | 763 | 12 | 151 | 5.30e-21 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040980 | AT4G01970.1 | 57.512 | 852 | 342 | 12 | 18 | 858 | 34 | 876 | 0.0 | 1011 |
| Msa1040980 | AT4G01970.2 | 57.512 | 852 | 342 | 12 | 18 | 858 | 81 | 923 | 0.0 | 1011 |
| Msa1040980 | AT5G40390.1 | 52.484 | 463 | 216 | 4 | 384 | 844 | 310 | 770 | 2.15e-172 | 518 |
| Msa1040980 | AT5G40390.1 | 42.761 | 297 | 146 | 4 | 18 | 302 | 22 | 306 | 1.66e-64 | 231 |
| Msa1040980 | AT5G20250.3 | 38.479 | 447 | 261 | 6 | 388 | 832 | 287 | 721 | 2.16e-92 | 308 |
| Msa1040980 | AT5G20250.3 | 34.576 | 295 | 155 | 4 | 20 | 299 | 9 | 280 | 1.59e-43 | 169 |
| Msa1040980 | AT5G20250.1 | 38.479 | 447 | 261 | 6 | 388 | 832 | 287 | 721 | 2.16e-92 | 308 |
| Msa1040980 | AT5G20250.1 | 34.576 | 295 | 155 | 4 | 20 | 299 | 9 | 280 | 1.59e-43 | 169 |
| Msa1040980 | AT5G20250.2 | 38.479 | 447 | 261 | 6 | 388 | 832 | 287 | 721 | 2.16e-92 | 308 |
| Msa1040980 | AT5G20250.2 | 34.576 | 295 | 155 | 4 | 20 | 299 | 9 | 280 | 1.59e-43 | 169 |
| Msa1040980 | AT3G57520.1 | 34.302 | 516 | 291 | 10 | 363 | 847 | 264 | 762 | 2.94e-92 | 308 |
| Msa1040980 | AT3G57520.1 | 36.667 | 240 | 135 | 3 | 71 | 299 | 42 | 275 | 1.22e-41 | 164 |
| Msa1040980 | AT5G20250.4 | 38.479 | 447 | 261 | 6 | 388 | 832 | 382 | 816 | 6.94e-92 | 308 |
| Msa1040980 | AT5G20250.4 | 34.576 | 295 | 155 | 4 | 20 | 299 | 104 | 375 | 2.95e-43 | 169 |
| Msa1040980 | AT1G55740.1 | 39.041 | 438 | 247 | 7 | 403 | 832 | 303 | 728 | 3.08e-89 | 299 |
| Msa1040980 | AT1G55740.1 | 32.180 | 289 | 165 | 5 | 20 | 299 | 9 | 275 | 1.40e-39 | 157 |
| Msa1040980 | AT3G57520.2 | 35.381 | 407 | 243 | 7 | 363 | 766 | 264 | 653 | 4.69e-78 | 266 |
| Msa1040980 | AT3G57520.2 | 36.667 | 240 | 135 | 3 | 71 | 299 | 42 | 275 | 4.73e-42 | 164 |
| Msa1040980 | AT3G57520.3 | 38.333 | 300 | 168 | 5 | 363 | 659 | 264 | 549 | 7.53e-61 | 217 |
| Msa1040980 | AT3G57520.3 | 36.667 | 240 | 135 | 3 | 71 | 299 | 42 | 275 | 1.43e-42 | 164 |
Find 205 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACTTTAATTTGGAATTT+TGG | 0.099821 | 7_1:-78484779 | Msa1040980:three_prime_UTR |
| CCCCTAAACTTGTGCTCTTT+TGG | 0.125940 | 7_1:+78485354 | None:intergenic |
| AAACAACTGTTCTCAAAATT+TGG | 0.128848 | 7_1:-78485740 | Msa1040980:CDS |
| CCAAATTTAGTTGATAAATT+TGG | 0.150419 | 7_1:-78487563 | Msa1040980:CDS |
| AATTGAATTGGTTCAGATTT+TGG | 0.163451 | 7_1:+78485186 | None:intergenic |
| AGAGGAAAATGTATGCATTT+TGG | 0.172365 | 7_1:+78485804 | None:intergenic |
| CCAAATTTATCAACTAAATT+TGG | 0.173870 | 7_1:+78487563 | None:intergenic |
| TTTATCTGAGGGAAAGTTTA+AGG | 0.176920 | 7_1:-78488146 | Msa1040980:CDS |
| CATTTCTCTTAACTTTAATT+TGG | 0.183688 | 7_1:-78484787 | Msa1040980:three_prime_UTR |
| TCCATTTCCATTAAAATTCT+TGG | 0.200527 | 7_1:+78486280 | None:intergenic |
| ATCATTCCTATAATTGAAAA+AGG | 0.215479 | 7_1:-78487788 | Msa1040980:CDS |
| ACTATTGGCTTGTAGCATTC+AGG | 0.242224 | 7_1:+78485327 | None:intergenic |
| TCTCACAAAGGTGGTTTCTT+TGG | 0.256159 | 7_1:-78488001 | Msa1040980:CDS |
| TATGAAAGTGGATTGTTATT+AGG | 0.257420 | 7_1:-78487305 | Msa1040980:CDS |
| CCATTCAATTGAAACTTCTT+TGG | 0.259667 | 7_1:+78484964 | None:intergenic |
| AAGAGGCTTATAGTGTTATA+AGG | 0.261390 | 7_1:-78487628 | Msa1040980:CDS |
| ACATTATCACTCAAATAAAT+TGG | 0.261796 | 7_1:+78485882 | None:intergenic |
| GGATTAAAAGGAGGTGAATT+AGG | 0.268125 | 7_1:+78487281 | None:intergenic |
| ACAGCATAGGATTTGATTTC+AGG | 0.273633 | 7_1:+78487812 | None:intergenic |
| TGAAAGTGGTGCAAAGATTA+AGG | 0.276825 | 7_1:-78485028 | Msa1040980:CDS |
| GGAATTGAACATGAGCATTT+GGG | 0.290038 | 7_1:-78487230 | Msa1040980:CDS |
| AACATCAAATTTGCACCAAT+TGG | 0.297810 | 7_1:-78485102 | Msa1040980:CDS |
| TTTATCTAAGAGTTCTGATT+TGG | 0.304861 | 7_1:-78487186 | Msa1040980:CDS |
| TGAAGTGGCGTTTGAGTGGC+TGG | 0.307659 | 7_1:-78484938 | Msa1040980:CDS |
| GGCTGCTGGTGTTTCTGATT+TGG | 0.316228 | 7_1:-78484875 | Msa1040980:CDS |
| ATGCTCATGTTCAATTCCTT+TGG | 0.319521 | 7_1:+78487235 | None:intergenic |
| CACTCTTATCTTGCTGAATC+TGG | 0.323017 | 7_1:-78486789 | Msa1040980:CDS |
| ATTGTTCCTATAATAGCTTA+TGG | 0.323339 | 7_1:-78485998 | Msa1040980:CDS |
| TCCCATCCATAAGCTATTAT+AGG | 0.323482 | 7_1:+78485992 | None:intergenic |
| AGGAATTGAACATGAGCATT+TGG | 0.323538 | 7_1:-78487231 | Msa1040980:CDS |
| CCAAAGAAGTTTCAATTGAA+TGG | 0.327615 | 7_1:-78484964 | Msa1040980:CDS |
| GAAGAAAGAAGCGTCTGATT+TGG | 0.331704 | 7_1:-78485268 | Msa1040980:CDS |
| AAAGAAATTGATGATCTCTT+TGG | 0.331904 | 7_1:-78487131 | Msa1040980:CDS |
| TGGTGGAACAATTCTTGATT+TGG | 0.333054 | 7_1:-78485058 | Msa1040980:CDS |
| TTTGTTCCAGTCACAAAGTT+TGG | 0.335025 | 7_1:-78485129 | Msa1040980:CDS |
| GGTGCAAAGATTAAGGTTAA+AGG | 0.343844 | 7_1:-78485021 | Msa1040980:CDS |
| AAACTTTCACCTGGCCTTGA+TGG | 0.345335 | 7_1:-78486903 | Msa1040980:CDS |
| CCCAAAAGAGCACAAGTTTA+GGG | 0.345555 | 7_1:-78485355 | Msa1040980:CDS |
| ACCCAAAAGAGCACAAGTTT+AGG | 0.346754 | 7_1:-78485356 | Msa1040980:CDS |
| TGTGTGCAGGGGACGACTTT+TGG | 0.348233 | 7_1:-78486082 | Msa1040980:intron |
| GTATTAAGATGTGTGGTTCC+TGG | 0.349633 | 7_1:+78486942 | None:intergenic |
| TGATAGATTGATGAATTCAT+TGG | 0.350934 | 7_1:-78487957 | Msa1040980:CDS |
| AAGTTTGCAAGGGACAATTT+TGG | 0.353779 | 7_1:+78486920 | None:intergenic |
| AATTCATTGGGTAGTTTCAA+TGG | 0.355636 | 7_1:-78487944 | Msa1040980:CDS |
| TGTTGCAAGGAAAAGGAGTA+TGG | 0.358061 | 7_1:-78487062 | Msa1040980:CDS |
| AAGAAAGAAGCGTCTGATTT+GGG | 0.360117 | 7_1:-78485267 | Msa1040980:CDS |
| ACTCAATGGGTTGGTAAATC+TGG | 0.360875 | 7_1:-78487878 | Msa1040980:CDS |
| TTGGATCACCATTAGGATCT+TGG | 0.360993 | 7_1:+78486057 | None:intergenic |
| TCTATCAGATGGGGTTTCAT+TGG | 0.361535 | 7_1:+78487973 | None:intergenic |
| AATTGGCTCTCAATGTTCCT+TGG | 0.365903 | 7_1:-78484906 | Msa1040980:CDS |
| AAAATTGTTGAAGGTTCAAT+TGG | 0.374085 | 7_1:-78486855 | Msa1040980:CDS |
| GCATGCATTATGTGGTGCTT+GGG | 0.377719 | 7_1:-78486976 | Msa1040980:CDS |
| GCTTGGGGTGGTGTGAGGCC+AGG | 0.381667 | 7_1:-78486960 | Msa1040980:CDS |
| GATGCAAAGAATCTTGTTCT+TGG | 0.383283 | 7_1:-78487386 | Msa1040980:CDS |
| GAATATGTGTGTGATAAATA+TGG | 0.383570 | 7_1:-78486356 | Msa1040980:CDS |
| CTTGCTGAATCTGGCGTCAC+AGG | 0.389510 | 7_1:-78486780 | Msa1040980:CDS |
| GTGGCTGGGTGATGGAAAAT+TGG | 0.390616 | 7_1:-78484923 | Msa1040980:CDS |
| ATAAATTTGGTTGGTGTACT+TGG | 0.391671 | 7_1:-78487550 | Msa1040980:CDS |
| GAGGACTAAGTTCAAAGGTT+TGG | 0.399831 | 7_1:-78487015 | Msa1040980:CDS |
| CATGAAATTTAGCACAAATA+TGG | 0.402279 | 7_1:+78485931 | None:intergenic |
| GCTTTCAACTGTCAAGGGGC+AGG | 0.405154 | 7_1:-78485384 | Msa1040980:CDS |
| AGATCAACGGTTGTGGAATT+CGG | 0.405372 | 7_1:+78488193 | None:intergenic |
| GCCTCTTTCATCAAATCATA+AGG | 0.410886 | 7_1:+78487644 | None:intergenic |
| ATCTGGTTCTGATTTACAAA+TGG | 0.419921 | 7_1:-78487861 | Msa1040980:CDS |
| GGCATGCATTATGTGGTGCT+TGG | 0.419974 | 7_1:-78486977 | Msa1040980:CDS |
| TCCATTAAAATTCTTGGCAA+TGG | 0.426719 | 7_1:+78486286 | None:intergenic |
| TATTTAACTGTTAATCCTGT+TGG | 0.427385 | 7_1:-78487518 | Msa1040980:CDS |
| TCCTTATGATTTGATGAAAG+AGG | 0.429052 | 7_1:-78487645 | Msa1040980:CDS |
| TAACCCTTCATAGTAAGCTT+TGG | 0.430154 | 7_1:+78486316 | None:intergenic |
| GGTTGAATGATAAATTGAAT+TGG | 0.432932 | 7_1:+78485174 | None:intergenic |
| GACAGATGATTCGACCTGAT+TGG | 0.433474 | 7_1:-78485971 | Msa1040980:CDS |
| GACTGAAACATGTCCCAATC+AGG | 0.434533 | 7_1:+78485957 | None:intergenic |
| TGGATGGCAAAGCATTAGTT+TGG | 0.435861 | 7_1:-78487429 | Msa1040980:CDS |
| ACATGCACAGTACCAACTAT+TGG | 0.438454 | 7_1:+78485312 | None:intergenic |
| AGGCTTTCACAAGGGATTTG+AGG | 0.440238 | 7_1:-78487034 | Msa1040980:CDS |
| CTATTGGCTTGTAGCATTCA+GGG | 0.449437 | 7_1:+78485328 | None:intergenic |
| CCTTGGATTGATGAGGCTGC+TGG | 0.450440 | 7_1:-78484889 | Msa1040980:CDS |
| GCTCCCATTGGATCACCATT+AGG | 0.450911 | 7_1:+78486050 | None:intergenic |
| AGAGGCTTATAGTGTTATAA+GGG | 0.452259 | 7_1:-78487627 | Msa1040980:CDS |
| TTGCTGAATCTGGCGTCACA+GGG | 0.453056 | 7_1:-78486779 | Msa1040980:CDS |
| TTGAAAAGACAATCTCTAGT+AGG | 0.453990 | 7_1:+78485780 | None:intergenic |
| ATTTACAAATGGAAACTCAA+TGG | 0.457763 | 7_1:-78487850 | Msa1040980:CDS |
| AGGTTCGTTATCATTGATGA+TGG | 0.458921 | 7_1:-78487449 | Msa1040980:CDS |
| ACATCAAATTTGCACCAATT+GGG | 0.460655 | 7_1:-78485101 | Msa1040980:CDS |
| CTTTCAACTGTCAAGGGGCA+GGG | 0.461758 | 7_1:-78485383 | Msa1040980:CDS |
| ATCAGTCAATTGAAATAGAA+AGG | 0.464390 | 7_1:+78484701 | None:intergenic |
| GAAATTGATGATCTCTTTGG+TGG | 0.465614 | 7_1:-78487128 | Msa1040980:CDS |
| CTTGCCAAAGCTTACTATGA+AGG | 0.466120 | 7_1:-78486320 | Msa1040980:CDS |
| TTCCTATAATAGCTTATGGA+TGG | 0.466764 | 7_1:-78485994 | Msa1040980:CDS |
| AAACAGTATGGAGGAGTGAT+TGG | 0.468721 | 7_1:-78485408 | Msa1040980:intron |
| AAACATGGTGGTCTACTCAA+TGG | 0.471026 | 7_1:-78487892 | Msa1040980:CDS |
| GCTGTGGTTAAAATTGTTGA+AGG | 0.473872 | 7_1:-78486864 | Msa1040980:CDS |
| TTTGATGAGATCAACGGTTG+TGG | 0.474107 | 7_1:+78488186 | None:intergenic |
| GGAAAAGGAGTATGGTTTGA+AGG | 0.477848 | 7_1:-78487054 | Msa1040980:CDS |
| ATTGAAATAGAAAGGCAATA+TGG | 0.483856 | 7_1:+78484709 | None:intergenic |
| GTCCCTTGCAAACTTTCACC+TGG | 0.492351 | 7_1:-78486912 | Msa1040980:CDS |
| ACAGATGATTCGACCTGATT+GGG | 0.492428 | 7_1:-78485970 | Msa1040980:CDS |
| GATAGATTGATGAATTCATT+GGG | 0.493686 | 7_1:-78487956 | Msa1040980:CDS |
| TGGAACAAAGCAAGTTTCCA+TGG | 0.495682 | 7_1:-78486216 | Msa1040980:CDS |
| TATGTGTGGCATGCATTATG+TGG | 0.498900 | 7_1:-78486984 | Msa1040980:CDS |
| ACTGGAAGGCTTCGTAGGCT+TGG | 0.499891 | 7_1:-78487350 | Msa1040980:CDS |
| TGGAAACTTGCTTTGTTCCA+AGG | 0.501688 | 7_1:+78486219 | None:intergenic |
| AAGCTTGTGTTGCAAGGAAA+AGG | 0.501879 | 7_1:-78487069 | Msa1040980:CDS |
| TTGCTTACCAACTCTTCCCA+TGG | 0.504038 | 7_1:+78486199 | None:intergenic |
| TCCATTGTTCCATCAAGGCC+AGG | 0.507048 | 7_1:+78486894 | None:intergenic |
| GAATTCATCAATCTATCAGA+TGG | 0.508626 | 7_1:+78487962 | None:intergenic |
| TCATTATTTGATTTATCTGA+GGG | 0.509766 | 7_1:-78488157 | Msa1040980:CDS |
| CAAGTTTCCATGGGAAGAGT+TGG | 0.510287 | 7_1:-78486206 | Msa1040980:intron |
| CAATGTTCCTTGGATTGATG+AGG | 0.510869 | 7_1:-78484896 | Msa1040980:CDS |
| TTGCCACCAAACTTTGTGAC+TGG | 0.510959 | 7_1:+78485123 | None:intergenic |
| GAACTGAAAGAAACATTCTC+AGG | 0.511175 | 7_1:+78488094 | None:intergenic |
| AACATGGTGGTCTACTCAAT+GGG | 0.514470 | 7_1:-78487891 | Msa1040980:CDS |
| ATTTGTGCTAAATTTCATGC+TGG | 0.516195 | 7_1:-78485927 | Msa1040980:CDS |
| GCGATTCACTTGAATAAGCA+AGG | 0.518180 | 7_1:+78484986 | None:intergenic |
| ATTAAGGAGTTGATTTCCAA+AGG | 0.521590 | 7_1:-78487251 | Msa1040980:CDS |
| CAACTGTCAAGGGGCAGGGT+GGG | 0.523724 | 7_1:-78485379 | Msa1040980:CDS |
| GATCTTCCATTGTTCCATCA+AGG | 0.523766 | 7_1:+78486889 | None:intergenic |
| GTGGAATTCGGTGGAGCCAT+GGG | 0.526067 | 7_1:+78488205 | None:intergenic |
| TGCATGTAACTGAAGTTGAA+TGG | 0.527632 | 7_1:-78485296 | Msa1040980:CDS |
| ATTGGTGCTTTCAACTGTCA+AGG | 0.528036 | 7_1:-78485390 | Msa1040980:CDS |
| GAATGCTACAAGCCAATAGT+TGG | 0.529509 | 7_1:-78485324 | Msa1040980:CDS |
| GCGTTTGAGTGGCTGGGTGA+TGG | 0.533274 | 7_1:-78484931 | Msa1040980:CDS |
| CCAAAAGAGCACAAGTTTAG+GGG | 0.533366 | 7_1:-78485354 | Msa1040980:CDS |
| AACATGTTGGTCAACCCAAT+TGG | 0.534399 | 7_1:+78485087 | None:intergenic |
| GTTCCAGTCACAAAGTTTGG+TGG | 0.534941 | 7_1:-78485126 | Msa1040980:CDS |
| GCTGGCTCAAGAGCTATTTG+TGG | 0.541307 | 7_1:-78485909 | Msa1040980:CDS |
| GTGGTGCTTGGGGTGGTGTG+AGG | 0.542369 | 7_1:-78486965 | Msa1040980:CDS |
| TAAATTTGGTTGGTGTACTT+GGG | 0.545091 | 7_1:-78487549 | Msa1040980:CDS |
| GTCATTATTTGATTTATCTG+AGG | 0.545173 | 7_1:-78488158 | Msa1040980:CDS |
| AATTCATCAATCTATCAGAT+GGG | 0.545924 | 7_1:+78487963 | None:intergenic |
| AGATCCTAATGGTGATCCAA+TGG | 0.546823 | 7_1:-78486054 | Msa1040980:CDS |
| TCGTTATCATTGATGATGGA+TGG | 0.546866 | 7_1:-78487445 | Msa1040980:CDS |
| TCCTATAATAGCTTATGGAT+GGG | 0.546975 | 7_1:-78485993 | Msa1040980:CDS |
| GCATGTAACTGAAGTTGAAT+GGG | 0.548533 | 7_1:-78485295 | Msa1040980:CDS |
| AAGATTAAGGTTAAAGGTGG+CGG | 0.548754 | 7_1:-78485015 | Msa1040980:CDS |
| AGACAATCTCTAGTAGGAAG+AGG | 0.549867 | 7_1:+78485786 | None:intergenic |
| TGTGGAATTCGGTGGAGCCA+TGG | 0.550203 | 7_1:+78488204 | None:intergenic |
| GTCATGATTTATGCTGAAAG+TGG | 0.552756 | 7_1:-78487728 | Msa1040980:CDS |
| TCAATTGAATGGTTCTGAAG+TGG | 0.554683 | 7_1:-78484953 | Msa1040980:CDS |
| CAAAAGGCGGCGTTGAACCA+AGG | 0.555881 | 7_1:-78487469 | Msa1040980:CDS |
| TTGGTGCTTTCAACTGTCAA+GGG | 0.555981 | 7_1:-78485389 | Msa1040980:CDS |
| AAGAAACTTGTGTTCCCTGA+TGG | 0.557362 | 7_1:-78485834 | Msa1040980:CDS |
| CATGCATTATGTGGTGCTTG+GGG | 0.560019 | 7_1:-78486975 | Msa1040980:CDS |
| ATTTAGTTGATAAATTTGGT+TGG | 0.560697 | 7_1:-78487559 | Msa1040980:CDS |
| ATTTATTTGAGTGATAATGT+TGG | 0.562359 | 7_1:-78485879 | Msa1040980:CDS |
| GATCCTAATGGTGATCCAAT+GGG | 0.563604 | 7_1:-78486053 | Msa1040980:CDS |
| AAACATTCTCAGGAACATCA+TGG | 0.565376 | 7_1:+78488104 | None:intergenic |
| TTGCCAAAGCTTACTATGAA+GGG | 0.565388 | 7_1:-78486319 | Msa1040980:CDS |
| CAAAATTTGGAACTTCAACA+AGG | 0.568909 | 7_1:-78485727 | Msa1040980:intron |
| AGGCCAGGTGAAAGTTTGCA+AGG | 0.571791 | 7_1:+78486909 | None:intergenic |
| GCAAAGAATCTTGTTCTTGG+TGG | 0.572951 | 7_1:-78487383 | Msa1040980:CDS |
| TTCAGCAAGATAAGAGTGCA+TGG | 0.574107 | 7_1:+78486794 | None:intergenic |
| AAATGACTGGAAGGCTTCGT+AGG | 0.575794 | 7_1:-78487355 | Msa1040980:CDS |
| AGGCAATATGGTCCAAAACA+AGG | 0.578922 | 7_1:+78484721 | None:intergenic |
| TGCTGAAAGTGGTTCAACAA+AGG | 0.580908 | 7_1:-78487717 | Msa1040980:CDS |
| TATGGTCCAAAACAAGGGAG+GGG | 0.582567 | 7_1:+78484727 | None:intergenic |
| GATTTGAGGACTAAGTTCAA+AGG | 0.583446 | 7_1:-78487020 | Msa1040980:CDS |
| TCCACCACTATTGAACATGT+TGG | 0.584769 | 7_1:+78485074 | None:intergenic |
| GGAACAAAGCAAGTTTCCAT+GGG | 0.587236 | 7_1:-78486215 | Msa1040980:CDS |
| ACCTGGCCTTGATGGAACAA+TGG | 0.589366 | 7_1:-78486895 | Msa1040980:CDS |
| AAAATTGTATAGCTCAAATG+TGG | 0.591781 | 7_1:+78485149 | None:intergenic |
| AGAAGCGTCTGATTTGGGTA+AGG | 0.592512 | 7_1:-78485262 | Msa1040980:CDS |
| GGCAATATGGTCCAAAACAA+GGG | 0.592551 | 7_1:+78484722 | None:intergenic |
| AGGTGGGGCATTTGAATCAG+AGG | 0.593587 | 7_1:+78488051 | None:intergenic |
| GGTGGGGCATTTGAATCAGA+GGG | 0.593672 | 7_1:+78488052 | None:intergenic |
| TATAGGAATGATCACAGCAT+AGG | 0.594324 | 7_1:+78487799 | None:intergenic |
| TGGCAAAGCATTAGTTTGGA+TGG | 0.596303 | 7_1:-78487425 | Msa1040980:CDS |
| ATGACATGATCATCAGAACC+TGG | 0.596806 | 7_1:+78487746 | None:intergenic |
| GGCTCAAGAGCTATTTGTGG+TGG | 0.597968 | 7_1:-78485906 | Msa1040980:CDS |
| GATTTGGAATATGTTGAAAG+TGG | 0.598008 | 7_1:-78485042 | Msa1040980:CDS |
| TCAACTGTCAAGGGGCAGGG+TGG | 0.598050 | 7_1:-78485380 | Msa1040980:CDS |
| GAATTGAACATGAGCATTTG+GGG | 0.600360 | 7_1:-78487229 | Msa1040980:CDS |
| ATGGTTTGAAGGCTTTCACA+AGG | 0.601600 | 7_1:-78487043 | Msa1040980:CDS |
| CTTGGTGGTGAACAAATGAC+TGG | 0.601615 | 7_1:-78487368 | Msa1040980:CDS |
| TTGACCAACATGTTCAATAG+TGG | 0.601821 | 7_1:-78485078 | Msa1040980:CDS |
| TGGTTTGAAGGCTTTCACAA+GGG | 0.602786 | 7_1:-78487042 | Msa1040980:CDS |
| GGGTAAGGCAGAAGAGTATG+TGG | 0.602965 | 7_1:-78485247 | Msa1040980:CDS |
| ACCAACATGTTCAATAGTGG+TGG | 0.603550 | 7_1:-78485075 | Msa1040980:CDS |
| GCATTATGTGGTGCTTGGGG+TGG | 0.604624 | 7_1:-78486972 | Msa1040980:CDS |
| GAGGGAAAGTTTAAGGTGAG+AGG | 0.604806 | 7_1:-78488139 | Msa1040980:CDS |
| CTTCATAGTAAGCTTTGGCA+AGG | 0.607720 | 7_1:+78486321 | None:intergenic |
| TCATCAATGATAACGAACCT+TGG | 0.607763 | 7_1:+78487452 | None:intergenic |
| ATATGGTCCAAAACAAGGGA+GGG | 0.611470 | 7_1:+78484726 | None:intergenic |
| GGCCAGGTGAAAGTTTGCAA+GGG | 0.623453 | 7_1:+78486910 | None:intergenic |
| TCAGGAACATCATGGAACAA+AGG | 0.625935 | 7_1:+78488112 | None:intergenic |
| TGGTGGTCTACTCAATGGGT+TGG | 0.627621 | 7_1:-78487887 | Msa1040980:CDS |
| AGGCTTCGTAGGCTTGGTGA+AGG | 0.628128 | 7_1:-78487344 | Msa1040980:CDS |
| GTGGTGAACAAATGACTGGA+AGG | 0.628570 | 7_1:-78487364 | Msa1040980:CDS |
| GAAGTGGCGTTTGAGTGGCT+GGG | 0.630895 | 7_1:-78484937 | Msa1040980:CDS |
| TCAACGGTTGTGGAATTCGG+TGG | 0.631067 | 7_1:+78488196 | None:intergenic |
| GTTCTGAAGTGGCGTTTGAG+TGG | 0.631457 | 7_1:-78484942 | Msa1040980:CDS |
| TCATATATAAAACAGTATGG+AGG | 0.631649 | 7_1:-78485417 | Msa1040980:intron |
| CAAAAGAGCACAAGTTTAGG+GGG | 0.633226 | 7_1:-78485353 | Msa1040980:CDS |
| TGGTGCTTTCAACTGTCAAG+GGG | 0.636041 | 7_1:-78485388 | Msa1040980:CDS |
| TTGTATAGCTCAAATGTGGA+TGG | 0.640248 | 7_1:+78485153 | None:intergenic |
| ATTCATCAATCTATCAGATG+GGG | 0.644616 | 7_1:+78487964 | None:intergenic |
| CCAGCAGCCTCATCAATCCA+AGG | 0.644799 | 7_1:+78484889 | None:intergenic |
| AATATGGTCCAAAACAAGGG+AGG | 0.648079 | 7_1:+78484725 | None:intergenic |
| GCAAAGATTAAGGTTAAAGG+TGG | 0.650425 | 7_1:-78485018 | Msa1040980:CDS |
| ATGTGGAAGCTTGTGTTGCA+AGG | 0.653096 | 7_1:-78487075 | Msa1040980:CDS |
| GTTTGGATGATGTTTATGTG+TGG | 0.662366 | 7_1:-78486998 | Msa1040980:CDS |
| TATGTGTGTGATAAATATGG+AGG | 0.686908 | 7_1:-78486353 | Msa1040980:CDS |
| TGCTGAATCTGGCGTCACAG+GGG | 0.702078 | 7_1:-78486778 | Msa1040980:CDS |
| AACAATGGAAGATCTTGCTG+TGG | 0.739747 | 7_1:-78486880 | Msa1040980:CDS |
| GGATGGTGCTGATCATAACG+AGG | 0.786161 | 7_1:-78487408 | Msa1040980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAGCTTAT+AGG | + | chr7_1:78487452-78487471 | None:intergenic | 10.0% |
| !! | TAACTAACTATTAGTTAATT+TGG | + | chr7_1:78486289-78486308 | None:intergenic | 15.0% |
| !! | TATGTACAAAAAAGTTTATA+AGG | + | chr7_1:78486380-78486399 | None:intergenic | 15.0% |
| !! | ATAAAAAAGCGATTATTATT+TGG | + | chr7_1:78486547-78486566 | None:intergenic | 15.0% |
| !!! | TTTTCATATATAAAACAGTA+TGG | - | chr7_1:78487517-78487536 | Msa1040980:CDS | 15.0% |
| !!! | TTAACTTTAATTTGGAATTT+TGG | - | chr7_1:78488158-78488177 | Msa1040980:CDS | 15.0% |
| !!! | TCATTATTTGATTTATCTGA+GGG | - | chr7_1:78484780-78484799 | Msa1040980:three_prime_UTR | 20.0% |
| !! | ATCATTCCTATAATTGAAAA+AGG | - | chr7_1:78485149-78485168 | Msa1040980:CDS | 20.0% |
| !! | CCAAATTTATCAACTAAATT+TGG | + | chr7_1:78485377-78485396 | None:intergenic | 20.0% |
| !!! | CCAAATTTAGTTGATAAATT+TGG | - | chr7_1:78485374-78485393 | Msa1040980:CDS | 20.0% |
| !!! | ATTTAGTTGATAAATTTGGT+TGG | - | chr7_1:78485378-78485397 | Msa1040980:CDS | 20.0% |
| !! | AAGTTCAAAAAATATGAAAG+TGG | - | chr7_1:78485620-78485639 | Msa1040980:intron | 20.0% |
| !!! | TTAATCGTTTTTGGATTAAA+AGG | + | chr7_1:78485671-78485690 | None:intergenic | 20.0% |
| !!! | TTTTAATCCAAAAACGATTA+AGG | - | chr7_1:78485670-78485689 | Msa1040980:intron | 20.0% |
| !! | TGTTGAAATATAATAGTTAG+CGG | - | chr7_1:78486339-78486358 | Msa1040980:CDS | 20.0% |
| !!! | CAGTGTATTTGATTTAAAAA+AGG | + | chr7_1:78486462-78486481 | None:intergenic | 20.0% |
| !! | ACATTATCACTCAAATAAAT+TGG | + | chr7_1:78487058-78487077 | None:intergenic | 20.0% |
| !!! | ATTTATTTGAGTGATAATGT+TGG | - | chr7_1:78487058-78487077 | Msa1040980:CDS | 20.0% |
| !!! | CTTTGCATATTTATTTTTGA+TGG | - | chr7_1:78487289-78487308 | Msa1040980:CDS | 20.0% |
| !! | GTTATTACATAATAGCTTAT+AGG | + | chr7_1:78487492-78487511 | None:intergenic | 20.0% |
| !! | CATTTCTCTTAACTTTAATT+TGG | - | chr7_1:78488150-78488169 | Msa1040980:CDS | 20.0% |
| ! | CATGGGAAGAAAAAAAAAAA+CGG | + | chr7_1:78484718-78484737 | None:intergenic | 25.0% |
| !! | GTCATTATTTGATTTATCTG+AGG | - | chr7_1:78484779-78484798 | Msa1040980:three_prime_UTR | 25.0% |
| !! | AAAAAGCAAGAACTTTTTGA+AGG | + | chr7_1:78484917-78484936 | None:intergenic | 25.0% |
| ! | AATTCATCAATCTATCAGAT+GGG | + | chr7_1:78484977-78484996 | None:intergenic | 25.0% |
| ! | TGATAGATTGATGAATTCAT+TGG | - | chr7_1:78484980-78484999 | Msa1040980:CDS | 25.0% |
| ! | GATAGATTGATGAATTCATT+GGG | - | chr7_1:78484981-78485000 | Msa1040980:CDS | 25.0% |
| ! | ATTTACAAATGGAAACTCAA+TGG | - | chr7_1:78485087-78485106 | Msa1040980:CDS | 25.0% |
| !!! | CTGAAACCTTTTTCAATTAT+AGG | + | chr7_1:78485158-78485177 | None:intergenic | 25.0% |
| ! | CTATAATTGAAAAAGGTTTC+AGG | - | chr7_1:78485156-78485175 | Msa1040980:CDS | 25.0% |
| ! | TATTTAACTGTTAATCCTGT+TGG | - | chr7_1:78485419-78485438 | Msa1040980:intron | 25.0% |
| !!! | TATGAAAGTGGATTGTTATT+AGG | - | chr7_1:78485632-78485651 | Msa1040980:intron | 25.0% |
| !! | TTTATCTAAGAGTTCTGATT+TGG | - | chr7_1:78485751-78485770 | Msa1040980:CDS | 25.0% |
| !! | AAAGAAATTGATGATCTCTT+TGG | - | chr7_1:78485806-78485825 | Msa1040980:CDS | 25.0% |
| !!! | AATTTTGGTATTAAGATGTG+TGG | + | chr7_1:78486005-78486024 | None:intergenic | 25.0% |
| ! | AAAATTGTTGAAGGTTCAAT+TGG | - | chr7_1:78486082-78486101 | Msa1040980:intron | 25.0% |
| ! | CATGGAATCATAAAAATCAT+TGG | + | chr7_1:78486128-78486147 | None:intergenic | 25.0% |
| ! | GAATATGTGTGTGATAAATA+TGG | - | chr7_1:78486581-78486600 | Msa1040980:intron | 25.0% |
| ! | TCCATTTCCATTAAAATTCT+TGG | + | chr7_1:78486660-78486679 | None:intergenic | 25.0% |
| ! | ATTGTTCCTATAATAGCTTA+TGG | - | chr7_1:78486939-78486958 | Msa1040980:CDS | 25.0% |
| ! | CATGAAATTTAGCACAAATA+TGG | + | chr7_1:78487009-78487028 | None:intergenic | 25.0% |
| ! | AAACAACTGTTCTCAAAATT+TGG | - | chr7_1:78487197-78487216 | Msa1040980:CDS | 25.0% |
| ! | TTATAGGAATACAAGAAACA+CGG | + | chr7_1:78487436-78487455 | None:intergenic | 25.0% |
| ! | TCATATATAAAACAGTATGG+AGG | - | chr7_1:78487520-78487539 | Msa1040980:CDS | 25.0% |
| !!! | AATTGAATTGGTTCAGATTT+TGG | + | chr7_1:78487754-78487773 | None:intergenic | 25.0% |
| ! | GGTTGAATGATAAATTGAAT+TGG | + | chr7_1:78487766-78487785 | None:intergenic | 25.0% |
| ! | AAAATTGTATAGCTCAAATG+TGG | + | chr7_1:78487791-78487810 | None:intergenic | 25.0% |
| ! | ATTGAAATAGAAAGGCAATA+TGG | + | chr7_1:78488231-78488250 | None:intergenic | 25.0% |
| ! | ATCAGTCAATTGAAATAGAA+AGG | + | chr7_1:78488239-78488258 | None:intergenic | 25.0% |
| !!! | CGTTTTTTTTTTTCTTCCCA+TGG | - | chr7_1:78484716-78484735 | Msa1040980:three_prime_UTR | 30.0% |
| TTTATCTGAGGGAAAGTTTA+AGG | - | chr7_1:78484791-78484810 | Msa1040980:three_prime_UTR | 30.0% | |
| ATTCATCAATCTATCAGATG+GGG | + | chr7_1:78484976-78484995 | None:intergenic | 30.0% | |
| GAATTCATCAATCTATCAGA+TGG | + | chr7_1:78484978-78484997 | None:intergenic | 30.0% | |
| AATTCATTGGGTAGTTTCAA+TGG | - | chr7_1:78484993-78485012 | Msa1040980:CDS | 30.0% | |
| ! | AAGACTTTGTCAGTATTTTC+AGG | - | chr7_1:78485018-78485037 | Msa1040980:CDS | 30.0% |
| !!! | GTATTTTCAGGTTCAAAACA+TGG | - | chr7_1:78485030-78485049 | Msa1040980:CDS | 30.0% |
| !! | ATCTGGTTCTGATTTACAAA+TGG | - | chr7_1:78485076-78485095 | Msa1040980:CDS | 30.0% |
| TCCTTATGATTTGATGAAAG+AGG | - | chr7_1:78485292-78485311 | Msa1040980:CDS | 30.0% | |
| AAGAGGCTTATAGTGTTATA+AGG | - | chr7_1:78485309-78485328 | Msa1040980:CDS | 30.0% | |
| AGAGGCTTATAGTGTTATAA+GGG | - | chr7_1:78485310-78485329 | Msa1040980:CDS | 30.0% | |
| !!! | TCTCAACACTTTTAGGTTAT+TGG | - | chr7_1:78485337-78485356 | Msa1040980:CDS | 30.0% |
| ! | ATAAATTTGGTTGGTGTACT+TGG | - | chr7_1:78485387-78485406 | Msa1040980:CDS | 30.0% |
| ! | TAAATTTGGTTGGTGTACTT+GGG | - | chr7_1:78485388-78485407 | Msa1040980:CDS | 30.0% |
| !! | ATCGTTTTTGGATTAAAAGG+AGG | + | chr7_1:78485668-78485687 | None:intergenic | 30.0% |
| ! | ATCAACTCCTTAATCGTTTT+TGG | + | chr7_1:78485680-78485699 | None:intergenic | 30.0% |
| ! | ATTAAGGAGTTGATTTCCAA+AGG | - | chr7_1:78485686-78485705 | Msa1040980:intron | 30.0% |
| AGTGTTCAAAAAAGTGAATG+TGG | - | chr7_1:78485845-78485864 | Msa1040980:CDS | 30.0% | |
| !! | TAAAAATCATTGGCTTGATC+AGG | + | chr7_1:78486118-78486137 | None:intergenic | 30.0% |
| TATGTGTGTGATAAATATGG+AGG | - | chr7_1:78486584-78486603 | Msa1040980:intron | 30.0% | |
| ! | TCCATTGCCAAGAATTTTAA+TGG | - | chr7_1:78486650-78486669 | Msa1040980:intron | 30.0% |
| TCCATTAAAATTCTTGGCAA+TGG | + | chr7_1:78486654-78486673 | None:intergenic | 30.0% | |
| !! | GCCAAGAATTTTAATGGAAA+TGG | - | chr7_1:78486656-78486675 | Msa1040980:intron | 30.0% |
| !!! | TGCAATGATTTTTTCTTCCT+TGG | - | chr7_1:78486701-78486720 | Msa1040980:intron | 30.0% |
| TTCCTATAATAGCTTATGGA+TGG | - | chr7_1:78486943-78486962 | Msa1040980:CDS | 30.0% | |
| TCCTATAATAGCTTATGGAT+GGG | - | chr7_1:78486944-78486963 | Msa1040980:CDS | 30.0% | |
| ATTTGTGCTAAATTTCATGC+TGG | - | chr7_1:78487010-78487029 | Msa1040980:CDS | 30.0% | |
| ! | GAGGAAAATGTATGCATTTT+GGG | + | chr7_1:78487135-78487154 | None:intergenic | 30.0% |
| ! | AGAGGAAAATGTATGCATTT+TGG | + | chr7_1:78487136-78487155 | None:intergenic | 30.0% |
| TTGAAAAGACAATCTCTAGT+AGG | + | chr7_1:78487160-78487179 | None:intergenic | 30.0% | |
| !! | CAGTTGTTTTGTCAAATAGA+GGG | + | chr7_1:78487186-78487205 | None:intergenic | 30.0% |
| !! | ACAGTTGTTTTGTCAAATAG+AGG | + | chr7_1:78487187-78487206 | None:intergenic | 30.0% |
| ! | CAAAATTTGGAACTTCAACA+AGG | - | chr7_1:78487210-78487229 | Msa1040980:CDS | 30.0% |
| ! | TAGTTGCTAGTATTGAAGTT+TGG | + | chr7_1:78487261-78487280 | None:intergenic | 30.0% |
| AACATCAAATTTGCACCAAT+TGG | - | chr7_1:78487835-78487854 | Msa1040980:CDS | 30.0% | |
| ACATCAAATTTGCACCAATT+GGG | - | chr7_1:78487836-78487855 | Msa1040980:CDS | 30.0% | |
| ! | GATTTGGAATATGTTGAAAG+TGG | - | chr7_1:78487895-78487914 | Msa1040980:CDS | 30.0% |
| CCATTCAATTGAAACTTCTT+TGG | + | chr7_1:78487976-78487995 | None:intergenic | 30.0% | |
| CCAAAGAAGTTTCAATTGAA+TGG | - | chr7_1:78487973-78487992 | Msa1040980:CDS | 30.0% | |
| !! | CTCAGTTTTGATGAGATCAA+CGG | + | chr7_1:78484760-78484779 | None:intergenic | 35.0% |
| AAACATTCTCAGGAACATCA+TGG | + | chr7_1:78484836-78484855 | None:intergenic | 35.0% | |
| GAACTGAAAGAAACATTCTC+AGG | + | chr7_1:78484846-78484865 | None:intergenic | 35.0% | |
| !! | AGAACTTTTTGAAGGAGTGA+AGG | + | chr7_1:78484909-78484928 | None:intergenic | 35.0% |
| !!! | GTTCTTGCTTTTTCTCACAA+AGG | - | chr7_1:78484924-78484943 | Msa1040980:CDS | 35.0% |
| !!! | TTTTCAGGTTCAAAACATGG+TGG | - | chr7_1:78485033-78485052 | Msa1040980:CDS | 35.0% |
| ! | ACAGCATAGGATTTGATTTC+AGG | + | chr7_1:78485128-78485147 | None:intergenic | 35.0% |
| TATAGGAATGATCACAGCAT+AGG | + | chr7_1:78485141-78485160 | None:intergenic | 35.0% | |
| GTCATGATTTATGCTGAAAG+TGG | - | chr7_1:78485209-78485228 | Msa1040980:CDS | 35.0% | |
| GCCTCTTTCATCAAATCATA+AGG | + | chr7_1:78485296-78485315 | None:intergenic | 35.0% | |
| !! | AATCCTGTTGGTGTTTTTCA+TGG | - | chr7_1:78485431-78485450 | Msa1040980:intron | 35.0% |
| ! | TCATCAATGATAACGAACCT+TGG | + | chr7_1:78485488-78485507 | None:intergenic | 35.0% |
| AGGTTCGTTATCATTGATGA+TGG | - | chr7_1:78485488-78485507 | Msa1040980:intron | 35.0% | |
| !! | TCGTTATCATTGATGATGGA+TGG | - | chr7_1:78485492-78485511 | Msa1040980:intron | 35.0% |
| GATGCAAAGAATCTTGTTCT+TGG | - | chr7_1:78485551-78485570 | Msa1040980:intron | 35.0% | |
| GGATTAAAAGGAGGTGAATT+AGG | + | chr7_1:78485659-78485678 | None:intergenic | 35.0% | |
| ATGCTCATGTTCAATTCCTT+TGG | + | chr7_1:78485705-78485724 | None:intergenic | 35.0% | |
| AGGAATTGAACATGAGCATT+TGG | - | chr7_1:78485706-78485725 | Msa1040980:intron | 35.0% | |
| GGAATTGAACATGAGCATTT+GGG | - | chr7_1:78485707-78485726 | Msa1040980:intron | 35.0% | |
| GAATTGAACATGAGCATTTG+GGG | - | chr7_1:78485708-78485727 | Msa1040980:intron | 35.0% | |
| ! | GAAATTGATGATCTCTTTGG+TGG | - | chr7_1:78485809-78485828 | Msa1040980:CDS | 35.0% |
| GATTTGAGGACTAAGTTCAA+AGG | - | chr7_1:78485917-78485936 | Msa1040980:CDS | 35.0% | |
| GTTTGGATGATGTTTATGTG+TGG | - | chr7_1:78485939-78485958 | Msa1040980:CDS | 35.0% | |
| ! | AAGTTTGCAAGGGACAATTT+TGG | + | chr7_1:78486020-78486039 | None:intergenic | 35.0% |
| GCTGTGGTTAAAATTGTTGA+AGG | - | chr7_1:78486073-78486092 | Msa1040980:CDS | 35.0% | |
| ! | GACTATTGTAGTGTTTGTTG+TGG | - | chr7_1:78486521-78486540 | Msa1040980:intron | 35.0% |
| TTGCCAAAGCTTACTATGAA+GGG | - | chr7_1:78486618-78486637 | Msa1040980:intron | 35.0% | |
| TAACCCTTCATAGTAAGCTT+TGG | + | chr7_1:78486624-78486643 | None:intergenic | 35.0% | |
| ! | AAGTTGTGATTTTTGTGTGC+AGG | - | chr7_1:78486842-78486861 | Msa1040980:CDS | 35.0% |
| ! | AGTTGTGATTTTTGTGTGCA+GGG | - | chr7_1:78486843-78486862 | Msa1040980:CDS | 35.0% |
| !!! | TTTTGGTTCCAAGATCCTAA+TGG | - | chr7_1:78486872-78486891 | Msa1040980:CDS | 35.0% |
| TCCCATCCATAAGCTATTAT+AGG | + | chr7_1:78486948-78486967 | None:intergenic | 35.0% | |
| !!! | ATTTTGGGATTGTACCATCA+GGG | + | chr7_1:78487120-78487139 | None:intergenic | 35.0% |
| TATTATCTTACACCGACACA+TGG | - | chr7_1:78487335-78487354 | Msa1040980:CDS | 35.0% | |
| TTAAATGTGACTCCATGTGT+CGG | + | chr7_1:78487350-78487369 | None:intergenic | 35.0% | |
| TGCATGTAACTGAAGTTGAA+TGG | - | chr7_1:78487641-78487660 | Msa1040980:CDS | 35.0% | |
| GCATGTAACTGAAGTTGAAT+GGG | - | chr7_1:78487642-78487661 | Msa1040980:CDS | 35.0% | |
| !! | AAGAAAGAAGCGTCTGATTT+GGG | - | chr7_1:78487670-78487689 | Msa1040980:CDS | 35.0% |
| TTGTATAGCTCAAATGTGGA+TGG | + | chr7_1:78487787-78487806 | None:intergenic | 35.0% | |
| TTTGTTCCAGTCACAAAGTT+TGG | - | chr7_1:78487808-78487827 | Msa1040980:CDS | 35.0% | |
| TTGACCAACATGTTCAATAG+TGG | - | chr7_1:78487859-78487878 | Msa1040980:CDS | 35.0% | |
| TGGTGGAACAATTCTTGATT+TGG | - | chr7_1:78487879-78487898 | Msa1040980:CDS | 35.0% | |
| TGAAAGTGGTGCAAAGATTA+AGG | - | chr7_1:78487909-78487928 | Msa1040980:CDS | 35.0% | |
| GGTGCAAAGATTAAGGTTAA+AGG | - | chr7_1:78487916-78487935 | Msa1040980:CDS | 35.0% | |
| GCAAAGATTAAGGTTAAAGG+TGG | - | chr7_1:78487919-78487938 | Msa1040980:CDS | 35.0% | |
| AAGATTAAGGTTAAAGGTGG+CGG | - | chr7_1:78487922-78487941 | Msa1040980:CDS | 35.0% | |
| !! | TCAATTGAATGGTTCTGAAG+TGG | - | chr7_1:78487984-78488003 | Msa1040980:CDS | 35.0% |
| AGATCAACGGTTGTGGAATT+CGG | + | chr7_1:78484747-78484766 | None:intergenic | 40.0% | |
| TTTGATGAGATCAACGGTTG+TGG | + | chr7_1:78484754-78484773 | None:intergenic | 40.0% | |
| TCAGGAACATCATGGAACAA+AGG | + | chr7_1:78484828-78484847 | None:intergenic | 40.0% | |
| !! | TTTTTGAAGGAGTGAAGGTG+GGG | + | chr7_1:78484904-78484923 | None:intergenic | 40.0% |
| !! | CTTTTTGAAGGAGTGAAGGT+GGG | + | chr7_1:78484905-78484924 | None:intergenic | 40.0% |
| !! | ACTTTTTGAAGGAGTGAAGG+TGG | + | chr7_1:78484906-78484925 | None:intergenic | 40.0% |
| !!! | CTTGCTTTTTCTCACAAAGG+TGG | - | chr7_1:78484927-78484946 | Msa1040980:CDS | 40.0% |
| TCTCACAAAGGTGGTTTCTT+TGG | - | chr7_1:78484936-78484955 | Msa1040980:CDS | 40.0% | |
| TCTATCAGATGGGGTTTCAT+TGG | + | chr7_1:78484967-78484986 | None:intergenic | 40.0% | |
| AAACATGGTGGTCTACTCAA+TGG | - | chr7_1:78485045-78485064 | Msa1040980:CDS | 40.0% | |
| AACATGGTGGTCTACTCAAT+GGG | - | chr7_1:78485046-78485065 | Msa1040980:CDS | 40.0% | |
| !! | ACTCAATGGGTTGGTAAATC+TGG | - | chr7_1:78485059-78485078 | Msa1040980:CDS | 40.0% |
| ATGACATGATCATCAGAACC+TGG | + | chr7_1:78485194-78485213 | None:intergenic | 40.0% | |
| TGCTGAAAGTGGTTCAACAA+AGG | - | chr7_1:78485220-78485239 | Msa1040980:CDS | 40.0% | |
| ! | GGGTTCATCTCAACACTTTT+AGG | - | chr7_1:78485330-78485349 | Msa1040980:CDS | 40.0% |
| AGACCATGAAAAACACCAAC+AGG | + | chr7_1:78485437-78485456 | None:intergenic | 40.0% | |
| !! | TGGTGTTTTTCATGGTCTTG+AGG | - | chr7_1:78485439-78485458 | Msa1040980:intron | 40.0% |
| !! | GGTGTTTTTCATGGTCTTGA+GGG | - | chr7_1:78485440-78485459 | Msa1040980:intron | 40.0% |
| !! | GGTCTTGAGGGTTTTTCAAA+AGG | - | chr7_1:78485452-78485471 | Msa1040980:intron | 40.0% |
| !! | CTTGAGGGTTTTTCAAAAGG+CGG | - | chr7_1:78485455-78485474 | Msa1040980:intron | 40.0% |
| ! | TGGATGGCAAAGCATTAGTT+TGG | - | chr7_1:78485508-78485527 | Msa1040980:intron | 40.0% |
| ! | TGGCAAAGCATTAGTTTGGA+TGG | - | chr7_1:78485512-78485531 | Msa1040980:intron | 40.0% |
| GCAAAGAATCTTGTTCTTGG+TGG | - | chr7_1:78485554-78485573 | Msa1040980:intron | 40.0% | |
| AAGCTTGTGTTGCAAGGAAA+AGG | - | chr7_1:78485868-78485887 | Msa1040980:CDS | 40.0% | |
| TGTTGCAAGGAAAAGGAGTA+TGG | - | chr7_1:78485875-78485894 | Msa1040980:CDS | 40.0% | |
| ! | GGAAAAGGAGTATGGTTTGA+AGG | - | chr7_1:78485883-78485902 | Msa1040980:CDS | 40.0% |
| ATGGTTTGAAGGCTTTCACA+AGG | - | chr7_1:78485894-78485913 | Msa1040980:CDS | 40.0% | |
| TGGTTTGAAGGCTTTCACAA+GGG | - | chr7_1:78485895-78485914 | Msa1040980:CDS | 40.0% | |
| GAGGACTAAGTTCAAAGGTT+TGG | - | chr7_1:78485922-78485941 | Msa1040980:CDS | 40.0% | |
| TATGTGTGGCATGCATTATG+TGG | - | chr7_1:78485953-78485972 | Msa1040980:CDS | 40.0% | |
| GTATTAAGATGTGTGGTTCC+TGG | + | chr7_1:78485998-78486017 | None:intergenic | 40.0% | |
| GATCTTCCATTGTTCCATCA+AGG | + | chr7_1:78486051-78486070 | None:intergenic | 40.0% | |
| AACAATGGAAGATCTTGCTG+TGG | - | chr7_1:78486057-78486076 | Msa1040980:CDS | 40.0% | |
| ! | TTCAGCAAGATAAGAGTGCA+TGG | + | chr7_1:78486146-78486165 | None:intergenic | 40.0% |
| CACTCTTATCTTGCTGAATC+TGG | - | chr7_1:78486148-78486167 | Msa1040980:intron | 40.0% | |
| ! | CTTCATAGTAAGCTTTGGCA+AGG | + | chr7_1:78486619-78486638 | None:intergenic | 40.0% |
| CTTGCCAAAGCTTACTATGA+AGG | - | chr7_1:78486617-78486636 | Msa1040980:intron | 40.0% | |
| ! | TGGAAACTTGCTTTGTTCCA+AGG | + | chr7_1:78486721-78486740 | None:intergenic | 40.0% |
| TGGAACAAAGCAAGTTTCCA+TGG | - | chr7_1:78486721-78486740 | Msa1040980:intron | 40.0% | |
| GGAACAAAGCAAGTTTCCAT+GGG | - | chr7_1:78486722-78486741 | Msa1040980:intron | 40.0% | |
| ! | GTTGTGATTTTTGTGTGCAG+GGG | - | chr7_1:78486844-78486863 | Msa1040980:CDS | 40.0% |
| TTGGATCACCATTAGGATCT+TGG | + | chr7_1:78486883-78486902 | None:intergenic | 40.0% | |
| AGATCCTAATGGTGATCCAA+TGG | - | chr7_1:78486883-78486902 | Msa1040980:CDS | 40.0% | |
| GATCCTAATGGTGATCCAAT+GGG | - | chr7_1:78486884-78486903 | Msa1040980:CDS | 40.0% | |
| TGTAACCAAAAAGCTCCCAT+TGG | + | chr7_1:78486902-78486921 | None:intergenic | 40.0% | |
| !!! | ATGGGAGCTTTTTGGTTACA+AGG | - | chr7_1:78486902-78486921 | Msa1040980:CDS | 40.0% |
| ACAGATGATTCGACCTGATT+GGG | - | chr7_1:78486967-78486986 | Msa1040980:CDS | 40.0% | |
| AAGAAACTTGTGTTCCCTGA+TGG | - | chr7_1:78487103-78487122 | Msa1040980:CDS | 40.0% | |
| !!! | CATTTTGGGATTGTACCATC+AGG | + | chr7_1:78487121-78487140 | None:intergenic | 40.0% |
| AGACAATCTCTAGTAGGAAG+AGG | + | chr7_1:78487154-78487173 | None:intergenic | 40.0% | |
| AAACAGTATGGAGGAGTGAT+TGG | - | chr7_1:78487529-78487548 | Msa1040980:CDS | 40.0% | |
| ! | ATTGGTGCTTTCAACTGTCA+AGG | - | chr7_1:78487547-78487566 | Msa1040980:CDS | 40.0% |
| ! | TTGGTGCTTTCAACTGTCAA+GGG | - | chr7_1:78487548-78487567 | Msa1040980:CDS | 40.0% |
| ! | ACCCAAAAGAGCACAAGTTT+AGG | - | chr7_1:78487581-78487600 | Msa1040980:CDS | 40.0% |
| ! | CCCTAAACTTGTGCTCTTTT+GGG | + | chr7_1:78487585-78487604 | None:intergenic | 40.0% |
| ! | CCCAAAAGAGCACAAGTTTA+GGG | - | chr7_1:78487582-78487601 | Msa1040980:CDS | 40.0% |
| ! | CCAAAAGAGCACAAGTTTAG+GGG | - | chr7_1:78487583-78487602 | Msa1040980:CDS | 40.0% |
| ! | CAAAAGAGCACAAGTTTAGG+GGG | - | chr7_1:78487584-78487603 | Msa1040980:CDS | 40.0% |
| !! | CTATTGGCTTGTAGCATTCA+GGG | + | chr7_1:78487612-78487631 | None:intergenic | 40.0% |
| !! | ACTATTGGCTTGTAGCATTC+AGG | + | chr7_1:78487613-78487632 | None:intergenic | 40.0% |
| GAATGCTACAAGCCAATAGT+TGG | - | chr7_1:78487613-78487632 | Msa1040980:CDS | 40.0% | |
| ACATGCACAGTACCAACTAT+TGG | + | chr7_1:78487628-78487647 | None:intergenic | 40.0% | |
| !! | GAAGAAAGAAGCGTCTGATT+TGG | - | chr7_1:78487669-78487688 | Msa1040980:CDS | 40.0% |
| AACATGTTGGTCAACCCAAT+TGG | + | chr7_1:78487853-78487872 | None:intergenic | 40.0% | |
| ACCAACATGTTCAATAGTGG+TGG | - | chr7_1:78487862-78487881 | Msa1040980:CDS | 40.0% | |
| TCCACCACTATTGAACATGT+TGG | + | chr7_1:78487866-78487885 | None:intergenic | 40.0% | |
| GCGATTCACTTGAATAAGCA+AGG | + | chr7_1:78487954-78487973 | None:intergenic | 40.0% | |
| ! | AATTGGCTCTCAATGTTCCT+TGG | - | chr7_1:78488031-78488050 | Msa1040980:CDS | 40.0% |
| CAATGTTCCTTGGATTGATG+AGG | - | chr7_1:78488041-78488060 | Msa1040980:CDS | 40.0% | |
| !!! | TTTTTTCCCCTCCCTTGTTT+TGG | - | chr7_1:78488204-78488223 | Msa1040980:CDS | 40.0% |
| ATATGGTCCAAAACAAGGGA+GGG | + | chr7_1:78488214-78488233 | None:intergenic | 40.0% | |
| AATATGGTCCAAAACAAGGG+AGG | + | chr7_1:78488215-78488234 | None:intergenic | 40.0% | |
| GGCAATATGGTCCAAAACAA+GGG | + | chr7_1:78488218-78488237 | None:intergenic | 40.0% | |
| AGGCAATATGGTCCAAAACA+AGG | + | chr7_1:78488219-78488238 | None:intergenic | 40.0% | |
| ! | GAGGGAAAGTTTAAGGTGAG+AGG | - | chr7_1:78484798-78484817 | Msa1040980:three_prime_UTR | 45.0% |
| !!! | TTCAGGTCTGCACTTTTTCC+AGG | - | chr7_1:78485173-78485192 | Msa1040980:CDS | 45.0% |
| !! | CTTGGTGGTGAACAAATGAC+TGG | - | chr7_1:78485569-78485588 | Msa1040980:intron | 45.0% |
| GTGGTGAACAAATGACTGGA+AGG | - | chr7_1:78485573-78485592 | Msa1040980:intron | 45.0% | |
| AAATGACTGGAAGGCTTCGT+AGG | - | chr7_1:78485582-78485601 | Msa1040980:intron | 45.0% | |
| ATGTGGAAGCTTGTGTTGCA+AGG | - | chr7_1:78485862-78485881 | Msa1040980:CDS | 45.0% | |
| AGGCTTTCACAAGGGATTTG+AGG | - | chr7_1:78485903-78485922 | Msa1040980:CDS | 45.0% | |
| GCATGCATTATGTGGTGCTT+GGG | - | chr7_1:78485961-78485980 | Msa1040980:CDS | 45.0% | |
| CATGCATTATGTGGTGCTTG+GGG | - | chr7_1:78485962-78485981 | Msa1040980:CDS | 45.0% | |
| !! | AAACTTTCACCTGGCCTTGA+TGG | - | chr7_1:78486034-78486053 | Msa1040980:CDS | 45.0% |
| CAAGTTTCCATGGGAAGAGT+TGG | - | chr7_1:78486731-78486750 | Msa1040980:intron | 45.0% | |
| TTGCTTACCAACTCTTCCCA+TGG | + | chr7_1:78486741-78486760 | None:intergenic | 45.0% | |
| ! | GTGATCCAATGGGAGCTTTT+TGG | - | chr7_1:78486894-78486913 | Msa1040980:CDS | 45.0% |
| GACAGATGATTCGACCTGAT+TGG | - | chr7_1:78486966-78486985 | Msa1040980:CDS | 45.0% | |
| GACTGAAACATGTCCCAATC+AGG | + | chr7_1:78486983-78487002 | None:intergenic | 45.0% | |
| TGGTGCTTTCAACTGTCAAG+GGG | - | chr7_1:78487549-78487568 | Msa1040980:CDS | 45.0% | |
| ! | CCCCTAAACTTGTGCTCTTT+TGG | + | chr7_1:78487586-78487605 | None:intergenic | 45.0% |
| !! | AGAAGCGTCTGATTTGGGTA+AGG | - | chr7_1:78487675-78487694 | Msa1040980:CDS | 45.0% |
| GTTCCAGTCACAAAGTTTGG+TGG | - | chr7_1:78487811-78487830 | Msa1040980:CDS | 45.0% | |
| TTGCCACCAAACTTTGTGAC+TGG | + | chr7_1:78487817-78487836 | None:intergenic | 45.0% | |
| TATGGTCCAAAACAAGGGAG+GGG | + | chr7_1:78488213-78488232 | None:intergenic | 45.0% | |
| TCAACGGTTGTGGAATTCGG+TGG | + | chr7_1:78484744-78484763 | None:intergenic | 50.0% | |
| ! | GGTGGGGCATTTGAATCAGA+GGG | + | chr7_1:78484888-78484907 | None:intergenic | 50.0% |
| ! | AGGTGGGGCATTTGAATCAG+AGG | + | chr7_1:78484889-78484908 | None:intergenic | 50.0% |
| TGGTGGTCTACTCAATGGGT+TGG | - | chr7_1:78485050-78485069 | Msa1040980:CDS | 50.0% | |
| !! | GGATGGTGCTGATCATAACG+AGG | - | chr7_1:78485529-78485548 | Msa1040980:intron | 50.0% |
| GGCATGCATTATGTGGTGCT+TGG | - | chr7_1:78485960-78485979 | Msa1040980:CDS | 50.0% | |
| GTCCCTTGCAAACTTTCACC+TGG | - | chr7_1:78486025-78486044 | Msa1040980:CDS | 50.0% | |
| GGCCAGGTGAAAGTTTGCAA+GGG | + | chr7_1:78486030-78486049 | None:intergenic | 50.0% | |
| AGGCCAGGTGAAAGTTTGCA+AGG | + | chr7_1:78486031-78486050 | None:intergenic | 50.0% | |
| !! | ACCTGGCCTTGATGGAACAA+TGG | - | chr7_1:78486042-78486061 | Msa1040980:CDS | 50.0% |
| TCCATTGTTCCATCAAGGCC+AGG | + | chr7_1:78486046-78486065 | None:intergenic | 50.0% | |
| TTGCTGAATCTGGCGTCACA+GGG | - | chr7_1:78486158-78486177 | Msa1040980:intron | 50.0% | |
| GCTCCCATTGGATCACCATT+AGG | + | chr7_1:78486890-78486909 | None:intergenic | 50.0% | |
| ! | GCTGGCTCAAGAGCTATTTG+TGG | - | chr7_1:78487028-78487047 | Msa1040980:CDS | 50.0% |
| GGCTCAAGAGCTATTTGTGG+TGG | - | chr7_1:78487031-78487050 | Msa1040980:CDS | 50.0% | |
| CTTTCAACTGTCAAGGGGCA+GGG | - | chr7_1:78487554-78487573 | Msa1040980:CDS | 50.0% | |
| ! | GGGTAAGGCAGAAGAGTATG+TGG | - | chr7_1:78487690-78487709 | Msa1040980:CDS | 50.0% |
| !! | GTTCTGAAGTGGCGTTTGAG+TGG | - | chr7_1:78487995-78488014 | Msa1040980:CDS | 50.0% |
| !! | GTGGCTGGGTGATGGAAAAT+TGG | - | chr7_1:78488014-78488033 | Msa1040980:CDS | 50.0% |
| ! | GGCTGCTGGTGTTTCTGATT+TGG | - | chr7_1:78488062-78488081 | Msa1040980:CDS | 50.0% |
| ! | GTGGAATTCGGTGGAGCCAT+GGG | + | chr7_1:78484735-78484754 | None:intergenic | 55.0% |
| ! | TGTGGAATTCGGTGGAGCCA+TGG | + | chr7_1:78484736-78484755 | None:intergenic | 55.0% |
| ! | CAAAAGGCGGCGTTGAACCA+AGG | - | chr7_1:78485468-78485487 | Msa1040980:intron | 55.0% |
| ACTGGAAGGCTTCGTAGGCT+TGG | - | chr7_1:78485587-78485606 | Msa1040980:intron | 55.0% | |
| !! | AGGCTTCGTAGGCTTGGTGA+AGG | - | chr7_1:78485593-78485612 | Msa1040980:intron | 55.0% |
| GCATTATGTGGTGCTTGGGG+TGG | - | chr7_1:78485965-78485984 | Msa1040980:CDS | 55.0% | |
| CTTGCTGAATCTGGCGTCAC+AGG | - | chr7_1:78486157-78486176 | Msa1040980:intron | 55.0% | |
| TGCTGAATCTGGCGTCACAG+GGG | - | chr7_1:78486159-78486178 | Msa1040980:intron | 55.0% | |
| ! | TGTGTGCAGGGGACGACTTT+TGG | - | chr7_1:78486855-78486874 | Msa1040980:CDS | 55.0% |
| GCTTTCAACTGTCAAGGGGC+AGG | - | chr7_1:78487553-78487572 | Msa1040980:CDS | 55.0% | |
| TGAAGTGGCGTTTGAGTGGC+TGG | - | chr7_1:78487999-78488018 | Msa1040980:CDS | 55.0% | |
| GAAGTGGCGTTTGAGTGGCT+GGG | - | chr7_1:78488000-78488019 | Msa1040980:CDS | 55.0% | |
| CCAGCAGCCTCATCAATCCA+AGG | + | chr7_1:78488051-78488070 | None:intergenic | 55.0% | |
| CCTTGGATTGATGAGGCTGC+TGG | - | chr7_1:78488048-78488067 | Msa1040980:CDS | 55.0% | |
| TCAACTGTCAAGGGGCAGGG+TGG | - | chr7_1:78487557-78487576 | Msa1040980:CDS | 60.0% | |
| CAACTGTCAAGGGGCAGGGT+GGG | - | chr7_1:78487558-78487577 | Msa1040980:CDS | 60.0% | |
| GCGTTTGAGTGGCTGGGTGA+TGG | - | chr7_1:78488006-78488025 | Msa1040980:CDS | 60.0% | |
| GTGGTGCTTGGGGTGGTGTG+AGG | - | chr7_1:78485972-78485991 | Msa1040980:CDS | 65.0% | |
| GCTTGGGGTGGTGTGAGGCC+AGG | - | chr7_1:78485977-78485996 | Msa1040980:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 78484692 | 78488267 | 78484692 | ID=Msa1040980;Name=Msa1040980 |
| chr7_1 | mRNA | 78484692 | 78488267 | 78484692 | ID=Msa1040980-mRNA-1;Parent=Msa1040980;Name=Msa1040980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=43|1|1|1|1|1|4|169|858 |
| chr7_1 | exon | 78484692 | 78485424 | 78484692 | ID=Msa1040980-mRNA-1:exon:20973;Parent=Msa1040980-mRNA-1 |
| chr7_1 | exon | 78485728 | 78486095 | 78485728 | ID=Msa1040980-mRNA-1:exon:20972;Parent=Msa1040980-mRNA-1 |
| chr7_1 | exon | 78486207 | 78486384 | 78486207 | ID=Msa1040980-mRNA-1:exon:20971;Parent=Msa1040980-mRNA-1 |
| chr7_1 | exon | 78486758 | 78488267 | 78486758 | ID=Msa1040980-mRNA-1:exon:20970;Parent=Msa1040980-mRNA-1 |
| chr7_1 | five_prime_UTR | 78488225 | 78488267 | 78488225 | ID=Msa1040980-mRNA-1:five_prime_utr;Parent=Msa1040980-mRNA-1 |
| chr7_1 | CDS | 78486758 | 78488224 | 78486758 | ID=Msa1040980-mRNA-1:cds;Parent=Msa1040980-mRNA-1 |
| chr7_1 | CDS | 78486207 | 78486384 | 78486207 | ID=Msa1040980-mRNA-1:cds;Parent=Msa1040980-mRNA-1 |
| chr7_1 | CDS | 78485728 | 78486095 | 78485728 | ID=Msa1040980-mRNA-1:cds;Parent=Msa1040980-mRNA-1 |
| chr7_1 | CDS | 78484861 | 78485424 | 78484861 | ID=Msa1040980-mRNA-1:cds;Parent=Msa1040980-mRNA-1 |
| chr7_1 | three_prime_UTR | 78484692 | 78484860 | 78484692 | ID=Msa1040980-mRNA-1:three_prime_utr;Parent=Msa1040980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
