AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0438020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0438020 MtrunA17_Chr7g0264021 99.405 168 1 0 10 177 390 557 5.91e-118 345
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0438020 AT2G37160.1 72.561 164 35 4 10 173 390 543 1.46e-76 238
Msa0438020 AT2G37160.2 73.333 165 32 5 10 173 419 572 2.37e-76 238
Msa0438020 AT3G53390.1 68.750 176 40 5 10 177 390 558 5.71e-75 234

Find 206 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGAGTTTGATCTTTA+AGG 0.071777 3_3:-2031059 None:intergenic
ACTGAAGTGGATAGACTTTA+TGG 0.160617 3_3:-2029267 None:intergenic
GATCCTTTCCCATCAAAATT+TGG 0.206453 3_3:-2029103 None:intergenic
TCTCCATTGTCATTTGAATT+TGG 0.238156 3_3:-2032144 None:intergenic
AGGATACACAATTGCTTCTA+TGG 0.247775 3_3:+2033189 Msa0438020:intron
CAACTTGTATTGCATAAATC+TGG 0.264831 3_3:+2033937 Msa0438020:three_prime_UTR
TGAAGTTTATATCTTCCTTC+AGG 0.271709 3_3:-2028221 None:intergenic
CCTGGTGGATCCCCAACTTT+TGG 0.276964 3_3:+2033257 Msa0438020:CDS
TCATGGCAAAACCGTTTCTA+TGG 0.280837 3_3:+2028283 Msa0438020:five_prime_UTR
GAAAGCGAAGCCATTGTTTC+AGG 0.284762 3_3:+2028033 Msa0438020:five_prime_UTR
GTCGTTGTACATGTATTTCT+TGG 0.299593 3_3:+2030830 Msa0438020:intron
AAGATGATTTAGTTCAAGTT+TGG 0.316460 3_3:+2031955 Msa0438020:five_prime_UTR
CATATATGCCATCTGGCTAT+TGG 0.333343 3_3:-2031420 None:intergenic
GATATCTGATTAGTGATTAC+AGG 0.349251 3_3:+2033831 Msa0438020:three_prime_UTR
GAGACAATTACGTATCGATT+TGG 0.355167 3_3:+2032165 Msa0438020:CDS
ACTCCCTTTAGATTAAGATT+TGG 0.360779 3_3:-2033605 None:intergenic
GGCTTCCAGCACTAAAAGTT+GGG 0.363371 3_3:-2033283 None:intergenic
TCACAGTTATCAACTTCGTT+AGG 0.369188 3_3:-2028065 None:intergenic
TTCGATAAAACTCATCCTTC+TGG 0.371017 3_3:+2028245 Msa0438020:five_prime_UTR
AACCGGGCGCTTAGCTTTGT+TGG 0.375397 3_3:+2028995 Msa0438020:five_prime_UTR
CTTAGCTTTGTTGGTGGAAA+TGG 0.379392 3_3:+2029004 Msa0438020:five_prime_UTR
GCTTCTATGGGAACTGGAAA+TGG 0.379823 3_3:+2033202 Msa0438020:CDS
AAGATGGAATTCTCAATAAC+AGG 0.379920 3_3:+2029540 Msa0438020:five_prime_UTR
TTTGGAACATCCCGCATACT+TGG 0.391651 3_3:-2033356 None:intergenic
TCTTACTTGGTGTTCAATGC+TGG 0.391863 3_3:+2029124 Msa0438020:five_prime_UTR
TGAGTTTGATCTTTAAGGAT+TGG 0.393274 3_3:-2031054 None:intergenic
TGCGGTGGGAAAAGTTATTA+TGG 0.393845 3_3:+2031671 Msa0438020:five_prime_UTR
AGATCAAATCAAAATCAAAT+AGG 0.398780 3_3:-2027980 None:intergenic
TTTGTTGTTGCTCATGCTGA+TGG 0.402301 3_3:+2030874 Msa0438020:five_prime_UTR
GACGGGCATGATTTACTCAT+AGG 0.402341 3_3:+2029332 Msa0438020:five_prime_UTR
GGTCTTCTTCAATTCAATCA+TGG 0.403240 3_3:+2028266 Msa0438020:five_prime_UTR
AGGCTGTGAGTACAGATTCT+TGG 0.407616 3_3:-2033439 None:intergenic
AACAGCCGTTCTGTAATTAC+AGG 0.408379 3_3:-2033803 None:intergenic
ACAATTGCTTCTATGGGAAC+TGG 0.410014 3_3:+2033196 Msa0438020:CDS
ACATGTATTTCTTGGGTGCC+TGG 0.410638 3_3:+2030838 Msa0438020:five_prime_UTR
TTACAGGAATAATGTGAAAT+TGG 0.411779 3_3:+2033847 Msa0438020:three_prime_UTR
TACTCACAGCCTGCCGGGAG+GGG 0.413101 3_3:+2033450 Msa0438020:CDS
TATACAAGAACAATAAATAA+TGG 0.414103 3_3:-2033909 None:intergenic
CTTACTTGGTGTTCAATGCT+GGG 0.414517 3_3:+2029125 Msa0438020:five_prime_UTR
CTGAAGTGGATAGACTTTAT+GGG 0.414994 3_3:-2029266 None:intergenic
ACTAGTTGCTAACAAGGTTT+CGG 0.415825 3_3:-2033525 None:intergenic
GTGGTTTATTATGTTGTGCT+TGG 0.418868 3_3:+2031693 Msa0438020:five_prime_UTR
TCAGCCGCAGCTAGATTGTT+AGG 0.419621 3_3:+2028959 Msa0438020:five_prime_UTR
ATTGTATATTCAGTTATTAA+CGG 0.420158 3_3:+2033721 Msa0438020:three_prime_UTR
GGCTGGCTCTCAGCTACGCC+AGG 0.421124 3_3:-2033494 None:intergenic
GAATTCCATCTTTGTTGTAA+TGG 0.421353 3_3:-2029529 None:intergenic
GAGTTTGATCTTTAAGGATT+GGG 0.421592 3_3:-2031053 None:intergenic
GGCTGTGAGTACAGATTCTT+GGG 0.425851 3_3:-2033438 None:intergenic
ATTACAGAACGGCTGTTACT+AGG 0.426876 3_3:+2033809 Msa0438020:three_prime_UTR
AGGTTTCGGAGTTGCTTGGC+TGG 0.430460 3_3:-2033511 None:intergenic
TCGATTTGGTTCAGTTGGTC+AGG 0.431205 3_3:+2032179 Msa0438020:CDS
CTCTGCTTTGGCAGCATGGA+CGG 0.435215 3_3:+2031909 Msa0438020:intron
GGGAGGGGCACATCAAAATC+TGG 0.436023 3_3:+2033465 Msa0438020:CDS
GACGATGCAGTCGGAGTTGA+AGG 0.437682 3_3:-2028905 None:intergenic
TTCCTATTTCAGAATAAAGA+TGG 0.439158 3_3:+2031012 Msa0438020:intron
TCCATCTTTGTTGTAATGGT+GGG 0.441612 3_3:-2029525 None:intergenic
TAACCAAATCTTAATCTAAA+GGG 0.441919 3_3:+2033602 Msa0438020:exon
GTCACTGAGACAGCAATTAC+AGG 0.445428 3_3:+2029478 Msa0438020:five_prime_UTR
TCGTTGTACATGTATTTCTT+GGG 0.445774 3_3:+2030831 Msa0438020:five_prime_UTR
CGTGTGCCACGCATTTGATC+AGG 0.446865 3_3:+2029301 Msa0438020:five_prime_UTR
GAAGTTTATATCTTCCTTCA+GGG 0.449420 3_3:-2028220 None:intergenic
CACAGTTATCAACTTCGTTA+GGG 0.449697 3_3:-2028064 None:intergenic
ATAACCAAATCTTAATCTAA+AGG 0.453448 3_3:+2033601 Msa0438020:exon
GTTTATTATGTTGTGCTTGG+AGG 0.453933 3_3:+2031696 Msa0438020:five_prime_UTR
GCTTCTCCTTAAGATGTGCT+AGG 0.458603 3_3:-2028878 None:intergenic
CTTGAGACTAGTTGCTAACA+AGG 0.459140 3_3:-2033531 None:intergenic
GGTAACCCTAGCACATCTTA+AGG 0.459308 3_3:+2028872 Msa0438020:intron
AAAGTTGGGGATCCAAAAGT+TGG 0.461725 3_3:-2033269 None:intergenic
TGATGGGAAAGGATCTTACT+TGG 0.462185 3_3:+2029111 Msa0438020:five_prime_UTR
TAGGAGGAAGTAATGGAAAC+CGG 0.465753 3_3:+2028978 Msa0438020:five_prime_UTR
CATTGTCCCAATGCGATGAC+TGG 0.466840 3_3:-2033304 None:intergenic
TTACTCATAGGGTTGTTCTC+TGG 0.467310 3_3:+2029344 Msa0438020:five_prime_UTR
TTCCTCGAGTTTGAGTAGTT+CGG 0.469786 3_3:+2029072 Msa0438020:five_prime_UTR
AAGTTGGGGATCCAAAAGTT+GGG 0.470487 3_3:-2033268 None:intergenic
TCTTGGGTGCCTGGAGGTGA+TGG 0.472490 3_3:+2030847 Msa0438020:five_prime_UTR
AGCCAGATGGCATATATGCC+AGG 0.475104 3_3:+2031425 Msa0438020:five_prime_UTR
AACAAGGTTTCGGAGTTGCT+TGG 0.475119 3_3:-2033515 None:intergenic
GACGGCGGCGTCATCTTCAT+CGG 0.477230 3_3:+2028133 Msa0438020:five_prime_UTR
TTTGATGTGCCCCTCCCGGC+AGG 0.477936 3_3:-2033459 None:intergenic
ATCAAAATCTGGACGAGACC+TGG 0.478205 3_3:+2033476 Msa0438020:CDS
CCAAAAGTTGGGGATCCACC+AGG 0.479345 3_3:-2033257 None:intergenic
TGGCTTCCAGCACTAAAAGT+TGG 0.481761 3_3:-2033284 None:intergenic
ATGATAAATACAACAACAAA+CGG 0.482252 3_3:+2028104 Msa0438020:five_prime_UTR
CGGGCGCTTAGCTTTGTTGG+TGG 0.484110 3_3:+2028998 Msa0438020:five_prime_UTR
TTGGGACAATGCAGTCCCAT+TGG 0.485533 3_3:+2033316 Msa0438020:CDS
TGGAAGCCAGTCATCGCATT+GGG 0.491178 3_3:+2033298 Msa0438020:CDS
AACTTGTATTGCATAAATCT+GGG 0.494266 3_3:+2033938 Msa0438020:three_prime_UTR
GGTTTCAAAACCTGAAACAA+TGG 0.494604 3_3:-2028043 None:intergenic
TTATGTCAAATGCTGTGATC+AGG 0.495230 3_3:+2032086 Msa0438020:CDS
GCCAGTAGGATTGGTTCGAT+TGG 0.496479 3_3:+2029049 Msa0438020:five_prime_UTR
TTGTTGTTGCTCATGCTGAT+GGG 0.499308 3_3:+2030875 Msa0438020:five_prime_UTR
ACCCTGGCATATATGCCATC+TGG 0.499513 3_3:-2031427 None:intergenic
ACGTATCGATTTGGTTCAGT+TGG 0.500803 3_3:+2032174 Msa0438020:CDS
GTACTCACAGCCTGCCGGGA+GGG 0.503802 3_3:+2033449 Msa0438020:CDS
AAAGAAACAAACCATAGAAA+CGG 0.503883 3_3:-2028294 None:intergenic
TGATTTGAATTCTCAAGATA+AGG 0.503988 3_3:+2029165 Msa0438020:five_prime_UTR
TGGGACAATGCAGTCCCATT+GGG 0.509441 3_3:+2033317 Msa0438020:CDS
CAAAGTAGTTGCATGGGGTG+AGG 0.510698 3_3:+2031992 Msa0438020:five_prime_UTR
AATGGTGGAGCCAGTAGGAT+TGG 0.510949 3_3:+2029040 Msa0438020:five_prime_UTR
TTCCATCTTTGTTGTAATGG+TGG 0.512681 3_3:-2029526 None:intergenic
AATAATGTGAAATTGGTCCT+TGG 0.513229 3_3:+2033854 Msa0438020:three_prime_UTR
TCCTCATACAGTTCTATCAA+TGG 0.513295 3_3:-2033753 None:intergenic
CGCATTTGATCAGGATGCTA+AGG 0.515921 3_3:+2029310 Msa0438020:five_prime_UTR
CTGTAATTACAGGAGGCGGT+TGG 0.516255 3_3:-2033793 None:intergenic
AGTATTTCTTTCTCAGCAGA+TGG 0.516344 3_3:+2031459 Msa0438020:five_prime_UTR
CTGATCAAATGCGTGGCACA+CGG 0.517878 3_3:-2029300 None:intergenic
ATCTGTACTCACAGCCTGCC+GGG 0.522484 3_3:+2033445 Msa0438020:CDS
GATGTTAAAACTAAACCAGC+CGG 0.524264 3_3:-2033667 None:intergenic
GCCCACCATTACAACAAAGA+TGG 0.529791 3_3:+2029524 Msa0438020:five_prime_UTR
GAATTTGTACGTATATGAAA+AGG 0.530335 3_3:+2030897 Msa0438020:five_prime_UTR
AATCTGTACTCACAGCCTGC+CGG 0.531281 3_3:+2033444 Msa0438020:CDS
CACCAACAAAGCTAAGCGCC+CGG 0.533046 3_3:-2028997 None:intergenic
TTAGCAACTGTTGGACGAGA+TGG 0.536304 3_3:+2031489 Msa0438020:five_prime_UTR
GTAAATATCAAGCTAGAAAG+TGG 0.537597 3_3:-2033416 None:intergenic
CATACTTGGAGCAGGCTGTA+AGG 0.537608 3_3:-2033342 None:intergenic
ACCAATCGAACCAATCCTAC+TGG 0.538239 3_3:-2029050 None:intergenic
TTAAGTAAAGATGAACCAGC+TGG 0.539019 3_3:+2033695 Msa0438020:three_prime_UTR
ACCTATTTCAAAACCCCTGA+AGG 0.539949 3_3:+2028206 Msa0438020:five_prime_UTR
ACGGCGGCGTCATCTTCATC+GGG 0.542403 3_3:+2028134 Msa0438020:five_prime_UTR
GTGTATTATTGCAGTTTACT+CGG 0.544422 3_3:+2029454 Msa0438020:intron
TGAATATACAATAAACCAGC+TGG 0.547943 3_3:-2033710 None:intergenic
TGCTCATGCACGGTACAGTA+AGG 0.548748 3_3:+2031086 Msa0438020:five_prime_UTR
AGATCGAATTTGTCCAACAT+TGG 0.549658 3_3:-2034071 None:intergenic
AGATCGCAAAGTAGTTGCAT+GGG 0.551085 3_3:+2031986 Msa0438020:five_prime_UTR
AAAGTAGTTGCATGGGGTGA+GGG 0.551517 3_3:+2031993 Msa0438020:five_prime_UTR
ACATCCCGCATACTTGGAGC+AGG 0.554605 3_3:-2033350 None:intergenic
TTGATAGAACTGTATGAGGA+TGG 0.555103 3_3:+2033756 Msa0438020:three_prime_UTR
GGTGCATACTTAGCAACTGT+TGG 0.555675 3_3:+2031480 Msa0438020:five_prime_UTR
TGATCAAATGCGTGGCACAC+GGG 0.558204 3_3:-2029299 None:intergenic
CTGGAAGCCAGTCATCGCAT+TGG 0.560193 3_3:+2033297 Msa0438020:CDS
CTCGAGTTTGAGTAGTTCGG+TGG 0.560493 3_3:+2029075 Msa0438020:five_prime_UTR
ACGGGCATGATTTACTCATA+GGG 0.560644 3_3:+2029333 Msa0438020:five_prime_UTR
CGTTCTGTAATTACAGGAGG+CGG 0.560926 3_3:-2033797 None:intergenic
GCCATTGATAGAACTGTATG+AGG 0.562906 3_3:+2033752 Msa0438020:three_prime_UTR
GGATACACAATTGCTTCTAT+GGG 0.562925 3_3:+2033190 Msa0438020:intron
TTACTTGGTGTTCAATGCTG+GGG 0.563399 3_3:+2029126 Msa0438020:five_prime_UTR
ACAAAAGCACCATCACCTCC+AGG 0.566909 3_3:-2030856 None:intergenic
ATAGGGTTGTTCTCTGGCGA+TGG 0.569853 3_3:+2029350 Msa0438020:five_prime_UTR
TTAGTGCAAGCAGTGGAGTA+CGG 0.570052 3_3:+2028936 Msa0438020:five_prime_UTR
AGATTGTTAGGAGGAAGTAA+TGG 0.570302 3_3:+2028971 Msa0438020:five_prime_UTR
ACAGCCTGCTCCAAGTATGC+GGG 0.570617 3_3:+2033346 Msa0438020:CDS
TACAGCCTGCTCCAAGTATG+CGG 0.575415 3_3:+2033345 Msa0438020:CDS
CTTCTCCTTAAGATGTGCTA+GGG 0.575634 3_3:-2028877 None:intergenic
ACATGCATCAACAGTATACA+AGG 0.577280 3_3:-2033974 None:intergenic
CTTGTTAGCAACTAGTCTCA+AGG 0.579509 3_3:+2033532 Msa0438020:CDS
AAAGAACACCTTGTATGCGG+TGG 0.581085 3_3:+2031656 Msa0438020:five_prime_UTR
TTTCAGAATAAAGATGGTGC+CGG 0.582903 3_3:+2031018 Msa0438020:intron
CAAAAGTTGGGGATCCACCA+GGG 0.583090 3_3:-2033256 None:intergenic
AAGATCGCAAAGTAGTTGCA+TGG 0.583282 3_3:+2031985 Msa0438020:five_prime_UTR
TGAAATTGGTCCTTGGAGAT+CGG 0.583695 3_3:+2033861 Msa0438020:three_prime_UTR
AAGTTTATATCTTCCTTCAG+GGG 0.585116 3_3:-2028219 None:intergenic
AGACAGCAATTACAGGATGT+TGG 0.585901 3_3:+2029485 Msa0438020:five_prime_UTR
TGAAGTGGATAGACTTTATG+GGG 0.586183 3_3:-2029265 None:intergenic
GCAGGCTGTAAGGTACCCAA+TGG 0.587041 3_3:-2033332 None:intergenic
GGGGTGAGGGACATAACTCA+TGG 0.589028 3_3:+2032006 Msa0438020:exon
TTGAATTGAAGAAGACCAGA+AGG 0.589635 3_3:-2028260 None:intergenic
TTTAGTTCAAGTTTGGAGCA+TGG 0.590056 3_3:+2031962 Msa0438020:five_prime_UTR
TTGATCAGGATGCTAAGGAC+GGG 0.590159 3_3:+2029315 Msa0438020:five_prime_UTR
CTGATCTTGCTAGAAAGTGA+AGG 0.593814 3_3:-2033560 None:intergenic
TCACCAAATTCAAATGACAA+TGG 0.595536 3_3:+2032141 Msa0438020:CDS
CGGGATTCGAATTACTGAAG+TGG 0.598235 3_3:-2029280 None:intergenic
GGTAGTAGCAAAAGCAATGG+TGG 0.600096 3_3:+2029025 Msa0438020:five_prime_UTR
AAGAACACCTTGTATGCGGT+GGG 0.603699 3_3:+2031657 Msa0438020:five_prime_UTR
TTTGATCAGGATGCTAAGGA+CGG 0.603813 3_3:+2029314 Msa0438020:five_prime_UTR
GATTGGGAATGAAGACTCGC+CGG 0.609980 3_3:-2031037 None:intergenic
GGTGGGAAAAGTTATTATGG+TGG 0.610840 3_3:+2031674 Msa0438020:five_prime_UTR
TGTATTGCATAAATCTGGGG+AGG 0.611056 3_3:+2033942 Msa0438020:three_prime_UTR
AGGAGGAAGTAATGGAAACC+GGG 0.614565 3_3:+2028979 Msa0438020:five_prime_UTR
CAGGCTGTAAGGTACCCAAT+GGG 0.615581 3_3:-2033331 None:intergenic
ATTGTAGTGCCCTTGAGGCG+AGG 0.619593 3_3:+2033230 Msa0438020:CDS
ATGTTAAAACTAAACCAGCC+GGG 0.621932 3_3:-2033666 None:intergenic
CGCCTCCTGTAATTACAGAA+CGG 0.624067 3_3:+2033798 Msa0438020:three_prime_UTR
GCCAGATGGCATATATGCCA+GGG 0.624282 3_3:+2031426 Msa0438020:five_prime_UTR
AAAGCAATGGTGGAGCCAGT+AGG 0.627494 3_3:+2029035 Msa0438020:five_prime_UTR
GCCGCAGCTAGATTGTTAGG+AGG 0.630434 3_3:+2028962 Msa0438020:five_prime_UTR
GTATTGCATAAATCTGGGGA+GGG 0.631846 3_3:+2033943 Msa0438020:three_prime_UTR
TATCAAGCTAGAAAGTGGCT+CGG 0.633400 3_3:-2033411 None:intergenic
TAAAATGTGATAATATCTTG+TGG 0.634174 3_3:+2033999 Msa0438020:three_prime_UTR
AGTTGGGGATCCAAAAGTTG+GGG 0.634433 3_3:-2033267 None:intergenic
AAAAGTTGGGGATCCACCAG+GGG 0.635287 3_3:-2033255 None:intergenic
AACAACAAACGGTAACATGA+CGG 0.636299 3_3:+2028115 Msa0438020:five_prime_UTR
TCCTCCTAACAATCTAGCTG+CGG 0.636351 3_3:-2028963 None:intergenic
CACCGAACTACTCAAACTCG+AGG 0.643573 3_3:-2029074 None:intergenic
ACGAGATTGTAGTGCCCTTG+AGG 0.646409 3_3:+2033225 Msa0438020:CDS
TGCAGTCGGAGTTGAAGGCG+CGG 0.646913 3_3:-2028900 None:intergenic
GCTTCCAGCACTAAAAGTTG+GGG 0.650482 3_3:-2033282 None:intergenic
AAATACTGTTAATCGAACCC+TGG 0.652611 3_3:-2031443 None:intergenic
TGTACTCACAGCCTGCCGGG+AGG 0.655851 3_3:+2033448 Msa0438020:CDS
AGAGTAATCCAATAGCCAGA+TGG 0.656690 3_3:+2031412 Msa0438020:intron
TAGCATCCTGATCAAATGCG+TGG 0.657879 3_3:-2029307 None:intergenic
AAAGTGGCTCGGTATGCACA+CGG 0.660145 3_3:-2033400 None:intergenic
CTGTGATCAGGTCAGTGGAG+TGG 0.663244 3_3:+2032098 Msa0438020:CDS
AGCCGTTCTGTAATTACAGG+AGG 0.664587 3_3:-2033800 None:intergenic
GGGTGAGGGACATAACTCAT+GGG 0.664835 3_3:+2032007 Msa0438020:exon
TCACAACAACAACAGCAACA+AGG 0.665713 3_3:+2028176 Msa0438020:five_prime_UTR
ACAAAAGAACACCTTGTATG+CGG 0.671610 3_3:+2031653 Msa0438020:five_prime_UTR
AATGGTAGTAGCAAAAGCAA+TGG 0.674018 3_3:+2029022 Msa0438020:five_prime_UTR
TGTATTTCTTGGGTGCCTGG+AGG 0.677365 3_3:+2030841 Msa0438020:five_prime_UTR
AAATGCTGTGATCAGGTCAG+TGG 0.678568 3_3:+2032093 Msa0438020:CDS
TTCAAAAGTACCGATCTCCA+AGG 0.678638 3_3:-2033871 None:intergenic
ACTTGTATTGCATAAATCTG+GGG 0.679038 3_3:+2033939 Msa0438020:three_prime_UTR
TGCACACGGTGAGCTACCAG+CGG 0.685700 3_3:-2033386 None:intergenic
AAACTCGAAGACGATGCAGT+CGG 0.691366 3_3:-2028914 None:intergenic
GATCGCAAAGTAGTTGCATG+GGG 0.704376 3_3:+2031987 Msa0438020:five_prime_UTR
AAAGTTGGGGATCCACCAGG+GGG 0.704631 3_3:-2033254 None:intergenic
AACAAACGGTAACATGACGG+CGG 0.709225 3_3:+2028118 Msa0438020:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTAAAATATATT+AGG + chr3_3:2028797-2028816 Msa0438020:intron 0.0%
!!! TTTAAAATAAAATAATGTCA+TGG - chr3_3:2028790-2028809 None:intergenic 10.0%
!! ATTTAAGAATAATAAATTCT+CGG - chr3_3:2030442-2030461 None:intergenic 10.0%
!! GAAATAAAAATTATTTGATT+AGG + chr3_3:2032508-2032527 Msa0438020:intron 10.0%
!! TTATAAGTTATTTAATTAGA+AGG + chr3_3:2032723-2032742 Msa0438020:intron 10.0%
!!! ACACTATTTTTTTATAAATT+TGG - chr3_3:2032831-2032850 None:intergenic 10.0%
!!! TTTAAGCATTTTTTTTTTTA+TGG + chr3_3:2033628-2033647 Msa0438020:three_prime_UTR 10.0%
!!! ATTCTATTTCATTCATTTTT+AGG + chr3_3:2028324-2028343 Msa0438020:intron 15.0%
!!! TTCTATTTCATTCATTTTTA+GGG + chr3_3:2028325-2028344 Msa0438020:intron 15.0%
!! TTAAAATATATTAGGAATTG+TGG + chr3_3:2028805-2028824 Msa0438020:intron 15.0%
!! CAATTTATTTATACACATTT+AGG - chr3_3:2029644-2029663 None:intergenic 15.0%
!! AAATAAAATCTAAAAAAGCA+GGG - chr3_3:2030356-2030375 None:intergenic 15.0%
!! TAAATAAAATCTAAAAAAGC+AGG - chr3_3:2030357-2030376 None:intergenic 15.0%
!!! CATTAACATTTTTGTTAAAA+TGG + chr3_3:2030407-2030426 Msa0438020:intron 15.0%
!!! AACTTATTTTGATCTTTTTA+TGG + chr3_3:2030959-2030978 Msa0438020:intron 15.0%
!!! TTAAGTCGTATATATATTTT+TGG + chr3_3:2031290-2031309 Msa0438020:intron 15.0%
!!! CTATTTTTTTATAAATTTGG+TGG - chr3_3:2032828-2032847 None:intergenic 15.0%
!!! TTTTTTTGTAGTATAGTATA+TGG + chr3_3:2033117-2033136 Msa0438020:intron 15.0%
!! ATTGTATATTCAGTTATTAA+CGG + chr3_3:2033721-2033740 Msa0438020:three_prime_UTR 15.0%
!! TATACAAGAACAATAAATAA+TGG - chr3_3:2033912-2033931 None:intergenic 15.0%
!! AGATCAAATCAAAATCAAAT+AGG - chr3_3:2027983-2028002 None:intergenic 20.0%
!! ATGATAAATACAACAACAAA+CGG + chr3_3:2028104-2028123 Msa0438020:five_prime_UTR 20.0%
!!! ATTTTATTGTGCTATATGTT+TGG + chr3_3:2028430-2028449 Msa0438020:intron 20.0%
!!! AAAAATGATTTTGAGTGAAT+TGG + chr3_3:2028466-2028485 Msa0438020:intron 20.0%
!!! TTATAACTTTTTTGGAGAAT+TGG + chr3_3:2028740-2028759 Msa0438020:intron 20.0%
!! AATTAATATAGAAGTTTCGT+TGG + chr3_3:2028842-2028861 Msa0438020:intron 20.0%
!! ATTAATATAGAAGTTTCGTT+GGG + chr3_3:2028843-2028862 Msa0438020:intron 20.0%
!! ATTTGAATTATCATTTCAGT+AGG + chr3_3:2029398-2029417 Msa0438020:intron 20.0%
!! TTTGAATTATCATTTCAGTA+GGG + chr3_3:2029399-2029418 Msa0438020:intron 20.0%
!! GATAAACTCAATTAATAAAC+AGG - chr3_3:2029759-2029778 None:intergenic 20.0%
!!! TAACCAATTGATTTTGATTA+TGG - chr3_3:2029880-2029899 None:intergenic 20.0%
!!! AAATCTTGTATTAATGGTTT+TGG + chr3_3:2030306-2030325 Msa0438020:intron 20.0%
!! TTAAATCTCGTGATTTATTA+TGG + chr3_3:2030456-2030475 Msa0438020:intron 20.0%
!! TTGTTATACAAAAATACATC+TGG + chr3_3:2030592-2030611 Msa0438020:intron 20.0%
!!! TACGTTTTATTAATTTCTCT+AGG + chr3_3:2030718-2030737 Msa0438020:intron 20.0%
!! ACAACAAGATTATAAAAGAT+AGG - chr3_3:2031178-2031197 None:intergenic 20.0%
!!! TTTTGCAAAGAAAAAGAAAT+AGG - chr3_3:2031567-2031586 None:intergenic 20.0%
!! AAAAATGTTAAACAGAATCT+TGG + chr3_3:2031583-2031602 Msa0438020:intron 20.0%
!! TTAGTCAATTTATTAGAGAT+TGG + chr3_3:2031735-2031754 Msa0438020:intron 20.0%
!! ATAAATGATTTACATCCTAT+TGG + chr3_3:2032271-2032290 Msa0438020:intron 20.0%
!!! AATTTTTATTTCAGTTTCCA+TGG - chr3_3:2032500-2032519 None:intergenic 20.0%
!!! TAGGAAATTTTAATTCCTTA+TGG + chr3_3:2032603-2032622 Msa0438020:intron 20.0%
!! TTATTTATGAAACTTGATGT+AGG + chr3_3:2032889-2032908 Msa0438020:intron 20.0%
!! ACTATACTACAAAAAAAGTT+GGG - chr3_3:2033114-2033133 None:intergenic 20.0%
!! TACTATACTACAAAAAAAGT+TGG - chr3_3:2033115-2033134 None:intergenic 20.0%
!! TTCCATTCATAAAATAAGTT+TGG - chr3_3:2033150-2033169 None:intergenic 20.0%
!! ATAACCAAATCTTAATCTAA+AGG + chr3_3:2033601-2033620 Msa0438020:exon 20.0%
!! TAACCAAATCTTAATCTAAA+GGG + chr3_3:2033602-2033621 Msa0438020:exon 20.0%
!!! ACAAGATATTATCACATTTT+AGG - chr3_3:2034000-2034019 None:intergenic 20.0%
!! TAAAATGTGATAATATCTTG+TGG + chr3_3:2033999-2034018 Msa0438020:three_prime_UTR 20.0%
!!! ATTTTTTTTATCACCAATGT+TGG + chr3_3:2034058-2034077 Msa0438020:three_prime_UTR 20.0%
! AAAGAAACAAACCATAGAAA+CGG - chr3_3:2028297-2028316 None:intergenic 25.0%
!!! GGTTTTGTAAAATTGATGTT+TGG + chr3_3:2028487-2028506 Msa0438020:intron 25.0%
! GTTTGGTAAAAATGAATTGA+AGG + chr3_3:2028504-2028523 Msa0438020:intron 25.0%
! AAAATGAATTGAAGGTAAAG+TGG + chr3_3:2028512-2028531 Msa0438020:intron 25.0%
!! TGTTTGATTTCACTTATAGA+GGG - chr3_3:2028703-2028722 None:intergenic 25.0%
!! ATGTTTGATTTCACTTATAG+AGG - chr3_3:2028704-2028723 None:intergenic 25.0%
! ATTAGGAATTGTGGATTTAA+TGG + chr3_3:2028814-2028833 Msa0438020:intron 25.0%
! TGATTTGAATTCTCAAGATA+AGG + chr3_3:2029165-2029184 Msa0438020:five_prime_UTR 25.0%
! TTGAATTATCATTTCAGTAG+GGG + chr3_3:2029400-2029419 Msa0438020:intron 25.0%
!! ATGTTGGTAAAAAGATTGTT+GGG + chr3_3:2029501-2029520 Msa0438020:five_prime_UTR 25.0%
! GAATCTAAAGAAGAAGAAAA+AGG - chr3_3:2029737-2029756 None:intergenic 25.0%
! ATCTATGATAGTAGGTTATA+AGG + chr3_3:2029785-2029804 Msa0438020:intron 25.0%
! ACTCCATAATCAAAATCAAT+TGG + chr3_3:2029874-2029893 Msa0438020:intron 25.0%
! GTTGTATGTATATATCTACA+AGG - chr3_3:2030241-2030260 None:intergenic 25.0%
!! CCATTAATACAAGATTTTGA+AGG - chr3_3:2030303-2030322 None:intergenic 25.0%
! CCTTCAAAATCTTGTATTAA+TGG + chr3_3:2030300-2030319 Msa0438020:intron 25.0%
! TGTTAGATTAGATAAAAGCT+AGG + chr3_3:2030514-2030533 Msa0438020:intron 25.0%
!!! AAAATACATCTGGTTTTATC+TGG + chr3_3:2030602-2030621 Msa0438020:intron 25.0%
!!! AAATACATCTGGTTTTATCT+GGG + chr3_3:2030603-2030622 Msa0438020:intron 25.0%
! ACTTCTATGGTTATAATTCA+TGG + chr3_3:2030653-2030672 Msa0438020:intron 25.0%
! CTTCTATGGTTATAATTCAT+GGG + chr3_3:2030654-2030673 Msa0438020:intron 25.0%
! TAATTCATGGGATTAATTAG+TGG + chr3_3:2030666-2030685 Msa0438020:intron 25.0%
! AACGTAACAATTTAGAGAAA+CGG - chr3_3:2030704-2030723 None:intergenic 25.0%
! CAATACATTAAAGTTCTACA+GGG - chr3_3:2030746-2030765 None:intergenic 25.0%
! GAATTTGTACGTATATGAAA+AGG + chr3_3:2030897-2030916 Msa0438020:five_prime_UTR 25.0%
!!! ATTCTGAAATAGGAAAGAAA+AGG - chr3_3:2031007-2031026 None:intergenic 25.0%
! TTCCTATTTCAGAATAAAGA+TGG + chr3_3:2031012-2031031 Msa0438020:intron 25.0%
! AAAACTGAGTTTGATCTTTA+AGG - chr3_3:2031062-2031081 None:intergenic 25.0%
! ATACGACTTAAATGTGTTAT+TGG - chr3_3:2031281-2031300 None:intergenic 25.0%
! TACATAACATACAATGAGAA+TGG - chr3_3:2031533-2031552 None:intergenic 25.0%
!!! TTATTTTACTTAATGCATCC+AGG + chr3_3:2031608-2031627 Msa0438020:intron 25.0%
! TTATTAGAGATTGGCATATT+TGG + chr3_3:2031744-2031763 Msa0438020:intron 25.0%
!! AAGATGATTTAGTTCAAGTT+TGG + chr3_3:2031955-2031974 Msa0438020:five_prime_UTR 25.0%
! CATAAACTAAATCAACACTA+TGG - chr3_3:2032071-2032090 None:intergenic 25.0%
!!! AGTCATGTTTTTCAAATGTT+GGG + chr3_3:2032420-2032439 Msa0438020:intron 25.0%
!!! ATCAAAGCATTCTCTTATTT+TGG - chr3_3:2032858-2032877 None:intergenic 25.0%
!!! TGCCAAACTTATTTTATGAA+TGG + chr3_3:2033145-2033164 Msa0438020:intron 25.0%
! TTACAGGAATAATGTGAAAT+TGG + chr3_3:2033847-2033866 Msa0438020:three_prime_UTR 25.0%
! AACTTGTATTGCATAAATCT+GGG + chr3_3:2033938-2033957 Msa0438020:three_prime_UTR 25.0%
!!! TTTTGATTTGATCTACAGTG+TGG + chr3_3:2027989-2028008 Msa0438020:five_prime_UTR 30.0%
AAGTTTATATCTTCCTTCAG+GGG - chr3_3:2028222-2028241 None:intergenic 30.0%
GAAGTTTATATCTTCCTTCA+GGG - chr3_3:2028223-2028242 None:intergenic 30.0%
TGAAGTTTATATCTTCCTTC+AGG - chr3_3:2028224-2028243 None:intergenic 30.0%
ATTACACACAGAAGTTAATG+CGG - chr3_3:2028412-2028431 None:intergenic 30.0%
AAGGTAAAGTGGTTTATGTT+TGG + chr3_3:2028523-2028542 Msa0438020:intron 30.0%
AAGATTGATTGTGACATGTT+TGG - chr3_3:2028677-2028696 None:intergenic 30.0%
AAACATGTCACAATCAATCT+TGG + chr3_3:2028676-2028695 Msa0438020:intron 30.0%
! GTTTGATTTCACTTATAGAG+GGG - chr3_3:2028702-2028721 None:intergenic 30.0%
!!! CTTTTTTGGAGAATTGGTTT+TGG + chr3_3:2028746-2028765 Msa0438020:intron 30.0%
!! TGGCTAATCCAAATTTTGAT+GGG + chr3_3:2029095-2029114 Msa0438020:five_prime_UTR 30.0%
!! AATCCAAATTTTGATGGGAA+AGG + chr3_3:2029100-2029119 Msa0438020:five_prime_UTR 30.0%
CAAGATAAGGTATACTTGTT+AGG + chr3_3:2029178-2029197 Msa0438020:intron 30.0%
!! TTGATGTGTTCTGAGTATTT+TGG + chr3_3:2029203-2029222 Msa0438020:intron 30.0%
!! TGATGTGTTCTGAGTATTTT+GGG + chr3_3:2029204-2029223 Msa0438020:intron 30.0%
TAAACTGCAATAATACACAC+AGG - chr3_3:2029452-2029471 None:intergenic 30.0%
GTGTATTATTGCAGTTTACT+CGG + chr3_3:2029454-2029473 Msa0438020:intron 30.0%
! GATGTTGGTAAAAAGATTGT+TGG + chr3_3:2029500-2029519 Msa0438020:five_prime_UTR 30.0%
! TGTTGGTAAAAAGATTGTTG+GGG + chr3_3:2029502-2029521 Msa0438020:five_prime_UTR 30.0%
! GAATTCCATCTTTGTTGTAA+TGG - chr3_3:2029532-2029551 None:intergenic 30.0%
AAGATGGAATTCTCAATAAC+AGG + chr3_3:2029540-2029559 Msa0438020:five_prime_UTR 30.0%
AAGGAAAACATATGCTGTTA+TGG + chr3_3:2029804-2029823 Msa0438020:intron 30.0%
! AACTGTTTTACTCTTGAAAC+GGG - chr3_3:2029991-2030010 None:intergenic 30.0%
! CAACTGTTTTACTCTTGAAA+CGG - chr3_3:2029992-2030011 None:intergenic 30.0%
TCTCTCTGTTATATGAATGA+AGG + chr3_3:2030156-2030175 Msa0438020:intron 30.0%
GTTTGAATATACCCATGATT+TGG + chr3_3:2030178-2030197 Msa0438020:intron 30.0%
!! TATCCGTGTCATTTAATGTA+GGG + chr3_3:2030202-2030221 Msa0438020:intron 30.0%
TCTCGTGATTTATTATGGAT+AGG + chr3_3:2030461-2030480 Msa0438020:intron 30.0%
CTCGTGATTTATTATGGATA+GGG + chr3_3:2030462-2030481 Msa0438020:intron 30.0%
TCGTGATTTATTATGGATAG+GGG + chr3_3:2030463-2030482 Msa0438020:intron 30.0%
AAACATCAACTGCTAATGTT+TGG - chr3_3:2030547-2030566 None:intergenic 30.0%
GCAATACATTAAAGTTCTAC+AGG - chr3_3:2030747-2030766 None:intergenic 30.0%
TCGTTGTACATGTATTTCTT+GGG + chr3_3:2030831-2030850 Msa0438020:five_prime_UTR 30.0%
!! CACCATCTTTATTCTGAAAT+AGG - chr3_3:2031017-2031036 None:intergenic 30.0%
! GAGTTTGATCTTTAAGGATT+GGG - chr3_3:2031056-2031075 None:intergenic 30.0%
! TGAGTTTGATCTTTAAGGAT+TGG - chr3_3:2031057-2031076 None:intergenic 30.0%
TAATGAGTTTGATGCTCATT+TGG + chr3_3:2031109-2031128 Msa0438020:intron 30.0%
!! TATGCTACTTCTATGTTTTG+TGG + chr3_3:2031151-2031170 Msa0438020:intron 30.0%
ACATCATAAAAACTCTGCTT+TGG + chr3_3:2031897-2031916 Msa0438020:intron 30.0%
AACTAAATCAACACTATGGT+AGG - chr3_3:2032067-2032086 None:intergenic 30.0%
TCACCAAATTCAAATGACAA+TGG + chr3_3:2032141-2032160 Msa0438020:CDS 30.0%
! TCTCCATTGTCATTTGAATT+TGG - chr3_3:2032147-2032166 None:intergenic 30.0%
!! TTTTGAATGTGTTGATAGAG+TGG + chr3_3:2032374-2032393 Msa0438020:intron 30.0%
!! CAGTCATGTTTTTCAAATGT+TGG + chr3_3:2032419-2032438 Msa0438020:intron 30.0%
TATCAATAACATGCCTAGTA+AGG + chr3_3:2032472-2032491 Msa0438020:intron 30.0%
! AGCTTTCATATGATGATGTT+AGG + chr3_3:2032584-2032603 Msa0438020:intron 30.0%
TTTAATTCCTTATGGTACGT+TGG + chr3_3:2032611-2032630 Msa0438020:intron 30.0%
! ATGGAACTAAGATGTTTTGT+TGG + chr3_3:2033164-2033183 Msa0438020:intron 30.0%
GTAAATATCAAGCTAGAAAG+TGG - chr3_3:2033419-2033438 None:intergenic 30.0%
ACTCCCTTTAGATTAAGATT+TGG - chr3_3:2033608-2033627 None:intergenic 30.0%
TGAATATACAATAAACCAGC+TGG - chr3_3:2033713-2033732 None:intergenic 30.0%
GATATCTGATTAGTGATTAC+AGG + chr3_3:2033831-2033850 Msa0438020:three_prime_UTR 30.0%
AATAATGTGAAATTGGTCCT+TGG + chr3_3:2033854-2033873 Msa0438020:three_prime_UTR 30.0%
CAACTTGTATTGCATAAATC+TGG + chr3_3:2033937-2033956 Msa0438020:three_prime_UTR 30.0%
ACTTGTATTGCATAAATCTG+GGG + chr3_3:2033939-2033958 Msa0438020:three_prime_UTR 30.0%
GGTTTCAAAACCTGAAACAA+TGG - chr3_3:2028046-2028065 None:intergenic 35.0%
CACAGTTATCAACTTCGTTA+GGG - chr3_3:2028067-2028086 None:intergenic 35.0%
TCACAGTTATCAACTTCGTT+AGG - chr3_3:2028068-2028087 None:intergenic 35.0%
AACAACAAACGGTAACATGA+CGG + chr3_3:2028115-2028134 Msa0438020:five_prime_UTR 35.0%
TTCGATAAAACTCATCCTTC+TGG + chr3_3:2028245-2028264 Msa0438020:five_prime_UTR 35.0%
TTGAATTGAAGAAGACCAGA+AGG - chr3_3:2028263-2028282 None:intergenic 35.0%
GGTCTTCTTCAATTCAATCA+TGG + chr3_3:2028266-2028285 Msa0438020:five_prime_UTR 35.0%
GCTTCAAGTAGAATCAATAC+CGG + chr3_3:2028624-2028643 Msa0438020:intron 35.0%
!! AAGCAGAATTGATTTTCCTC+CGG - chr3_3:2028646-2028665 None:intergenic 35.0%
AGATTGTTAGGAGGAAGTAA+TGG + chr3_3:2028971-2028990 Msa0438020:five_prime_UTR 35.0%
AATGGTAGTAGCAAAAGCAA+TGG + chr3_3:2029022-2029041 Msa0438020:five_prime_UTR 35.0%
! GTGGCTAATCCAAATTTTGA+TGG + chr3_3:2029094-2029113 Msa0438020:five_prime_UTR 35.0%
GATCCTTTCCCATCAAAATT+TGG - chr3_3:2029106-2029125 None:intergenic 35.0%
TGAAGTGGATAGACTTTATG+GGG - chr3_3:2029268-2029287 None:intergenic 35.0%
CTGAAGTGGATAGACTTTAT+GGG - chr3_3:2029269-2029288 None:intergenic 35.0%
ACTGAAGTGGATAGACTTTA+TGG - chr3_3:2029270-2029289 None:intergenic 35.0%
! TCCATCTTTGTTGTAATGGT+GGG - chr3_3:2029528-2029547 None:intergenic 35.0%
! TTCCATCTTTGTTGTAATGG+TGG - chr3_3:2029529-2029548 None:intergenic 35.0%
! AACTATGAGTGACTTGTGTT+AGG + chr3_3:2029597-2029616 Msa0438020:intron 35.0%
! TTAGAGAATGAATCCCCTTT+TGG - chr3_3:2029686-2029705 None:intergenic 35.0%
TCGTGTCAATCTATGATAGT+AGG + chr3_3:2029777-2029796 Msa0438020:intron 35.0%
TTGATTATGGAGTGACATTC+AGG - chr3_3:2029867-2029886 None:intergenic 35.0%
AGTAAAACAGTTGCTTGTGA+TGG + chr3_3:2029999-2030018 Msa0438020:intron 35.0%
! CTTGGGAAACATAGAAGTTT+TGG - chr3_3:2030058-2030077 None:intergenic 35.0%
TTCAGGATACTAGAACTCTT+GGG - chr3_3:2030075-2030094 None:intergenic 35.0%
!! CTATCCGTGTCATTTAATGT+AGG + chr3_3:2030201-2030220 Msa0438020:intron 35.0%
!! ATCCGTGTCATTTAATGTAG+GGG + chr3_3:2030203-2030222 Msa0438020:intron 35.0%
TCTAACAACTAACAAGCTTC+TGG - chr3_3:2030501-2030520 None:intergenic 35.0%
!! CAGTTGATGTTTCTAGTCAA+TGG + chr3_3:2030555-2030574 Msa0438020:intron 35.0%
!! GTTGATGTCATTGACTTCTA+TGG + chr3_3:2030640-2030659 Msa0438020:intron 35.0%
GTCGTTGTACATGTATTTCT+TGG + chr3_3:2030830-2030849 Msa0438020:intron 35.0%
TTTCAGAATAAAGATGGTGC+CGG + chr3_3:2031018-2031037 Msa0438020:intron 35.0%
AAATACTGTTAATCGAACCC+TGG - chr3_3:2031446-2031465 None:intergenic 35.0%
AGTATTTCTTTCTCAGCAGA+TGG + chr3_3:2031459-2031478 Msa0438020:five_prime_UTR 35.0%
ACAAAAGAACACCTTGTATG+CGG + chr3_3:2031653-2031672 Msa0438020:five_prime_UTR 35.0%
GTGGTTTATTATGTTGTGCT+TGG + chr3_3:2031693-2031712 Msa0438020:five_prime_UTR 35.0%
GTTTATTATGTTGTGCTTGG+AGG + chr3_3:2031696-2031715 Msa0438020:five_prime_UTR 35.0%
!! AAGTTCTAGAGTGAGAAAGT+GGG - chr3_3:2031778-2031797 None:intergenic 35.0%
!! GGACGGAAAGTATATTTTGA+CGG + chr3_3:2031926-2031945 Msa0438020:five_prime_UTR 35.0%
!!! GACGGAAAGTATATTTTGAC+GGG + chr3_3:2031927-2031946 Msa0438020:five_prime_UTR 35.0%
! TTTAGTTCAAGTTTGGAGCA+TGG + chr3_3:2031962-2031981 Msa0438020:five_prime_UTR 35.0%
!! GTTGCTTGGTAATTTTGAGT+TGG + chr3_3:2032033-2032052 Msa0438020:intron 35.0%
TTATGTCAAATGCTGTGATC+AGG + chr3_3:2032086-2032105 Msa0438020:CDS 35.0%
!! GAGTGGCTTTTGATTCATAT+TGG + chr3_3:2032115-2032134 Msa0438020:CDS 35.0%
!! GAGACAATTACGTATCGATT+TGG + chr3_3:2032165-2032184 Msa0438020:CDS 35.0%
! TAAGATTTTAAGCAGAGAGC+CGG - chr3_3:2032252-2032271 None:intergenic 35.0%
TCAAACTAAGATACTGTGTC+TGG - chr3_3:2032555-2032574 None:intergenic 35.0%
! GACACAGTATCTTAGTTTGA+TGG + chr3_3:2032555-2032574 Msa0438020:intron 35.0%
TAAGAGAATGCTTTGATGCA+TGG + chr3_3:2032861-2032880 Msa0438020:intron 35.0%
TGTTATGCTGTGATGTTGAA+AGG + chr3_3:2032992-2033011 Msa0438020:intron 35.0%
!! ACTAAGATGTTTTGTTGGTC+AGG + chr3_3:2033169-2033188 Msa0438020:intron 35.0%
AGGATACACAATTGCTTCTA+TGG + chr3_3:2033189-2033208 Msa0438020:intron 35.0%
GGATACACAATTGCTTCTAT+GGG + chr3_3:2033190-2033209 Msa0438020:intron 35.0%
ACTAGTTGCTAACAAGGTTT+CGG - chr3_3:2033528-2033547 None:intergenic 35.0%
!!! TGGTTTGTTGATCTTTTACC+CGG + chr3_3:2033648-2033667 Msa0438020:three_prime_UTR 35.0%
ATGTTAAAACTAAACCAGCC+GGG - chr3_3:2033669-2033688 None:intergenic 35.0%
GATGTTAAAACTAAACCAGC+CGG - chr3_3:2033670-2033689 None:intergenic 35.0%
TTAAGTAAAGATGAACCAGC+TGG + chr3_3:2033695-2033714 Msa0438020:three_prime_UTR 35.0%
TCCTCATACAGTTCTATCAA+TGG - chr3_3:2033756-2033775 None:intergenic 35.0%
TTGATAGAACTGTATGAGGA+TGG + chr3_3:2033756-2033775 Msa0438020:three_prime_UTR 35.0%
ACATGCATCAACAGTATACA+AGG - chr3_3:2033977-2033996 None:intergenic 35.0%
TCACAACAACAACAGCAACA+AGG + chr3_3:2028176-2028195 Msa0438020:five_prime_UTR 40.0%
ACCTATTTCAAAACCCCTGA+AGG + chr3_3:2028206-2028225 Msa0438020:five_prime_UTR 40.0%
!!! TCCTTCAGGGGTTTTGAAAT+AGG - chr3_3:2028210-2028229 None:intergenic 40.0%
TCATGGCAAAACCGTTTCTA+TGG + chr3_3:2028283-2028302 Msa0438020:five_prime_UTR 40.0%
TCAAGTAGAATCAATACCGG+AGG + chr3_3:2028627-2028646 Msa0438020:intron 40.0%
CTTCTCCTTAAGATGTGCTA+GGG - chr3_3:2028880-2028899 None:intergenic 40.0%
! TAGGAGGAAGTAATGGAAAC+CGG + chr3_3:2028978-2028997 Msa0438020:five_prime_UTR 40.0%
!! CTTAGCTTTGTTGGTGGAAA+TGG + chr3_3:2029004-2029023 Msa0438020:five_prime_UTR 40.0%
TTCCTCGAGTTTGAGTAGTT+CGG + chr3_3:2029072-2029091 Msa0438020:five_prime_UTR 40.0%
TGATGGGAAAGGATCTTACT+TGG + chr3_3:2029111-2029130 Msa0438020:five_prime_UTR 40.0%
!! TCTTACTTGGTGTTCAATGC+TGG + chr3_3:2029124-2029143 Msa0438020:five_prime_UTR 40.0%
!! CTTACTTGGTGTTCAATGCT+GGG + chr3_3:2029125-2029144 Msa0438020:five_prime_UTR 40.0%
!! TTACTTGGTGTTCAATGCTG+GGG + chr3_3:2029126-2029145 Msa0438020:five_prime_UTR 40.0%
ACAAGAAACCTTGGATGAAG+CGG - chr3_3:2029234-2029253 None:intergenic 40.0%
CTGCAAACAACAAGAAACCT+TGG - chr3_3:2029243-2029262 None:intergenic 40.0%
!! CAAGGTTTCTTGTTGTTTGC+AGG + chr3_3:2029241-2029260 Msa0438020:intron 40.0%
TTTGATCAGGATGCTAAGGA+CGG + chr3_3:2029314-2029333 Msa0438020:five_prime_UTR 40.0%
ACGGGCATGATTTACTCATA+GGG + chr3_3:2029333-2029352 Msa0438020:five_prime_UTR 40.0%
TTACTCATAGGGTTGTTCTC+TGG + chr3_3:2029344-2029363 Msa0438020:five_prime_UTR 40.0%
AGACAGCAATTACAGGATGT+TGG + chr3_3:2029485-2029504 Msa0438020:five_prime_UTR 40.0%
AGGGGATTCATTCTCTAATG+TGG + chr3_3:2029688-2029707 Msa0438020:intron 40.0%
CTGTTATGGATATGCTGAGA+TGG + chr3_3:2029818-2029837 Msa0438020:intron 40.0%
TATGGATATGCTGAGATGGT+TGG + chr3_3:2029822-2029841 Msa0438020:intron 40.0%
CTTCAGGATACTAGAACTCT+TGG - chr3_3:2030076-2030095 None:intergenic 40.0%
! CAAGAGTTCTAGTATCCTGA+AGG + chr3_3:2030074-2030093 Msa0438020:intron 40.0%
TAGTATCCTGAAGGCTACAA+TGG + chr3_3:2030083-2030102 Msa0438020:intron 40.0%
TAACATCCATTGTAGCCTTC+AGG - chr3_3:2030092-2030111 None:intergenic 40.0%
TAACAGAGAGATTACCGACA+AGG - chr3_3:2030147-2030166 None:intergenic 40.0%
!! TCCGTGTCATTTAATGTAGG+GGG + chr3_3:2030204-2030223 Msa0438020:intron 40.0%
TCCCCCTACATTAAATGACA+CGG - chr3_3:2030208-2030227 None:intergenic 40.0%
TAATGTAGGGGGAACTATGT+TGG + chr3_3:2030215-2030234 Msa0438020:intron 40.0%
GAAGGTTAATCAAGCACTAC+AGG - chr3_3:2030285-2030304 None:intergenic 40.0%
!! TTTGTTGTTGCTCATGCTGA+TGG + chr3_3:2030874-2030893 Msa0438020:five_prime_UTR 40.0%
! TTGTTGTTGCTCATGCTGAT+GGG + chr3_3:2030875-2030894 Msa0438020:five_prime_UTR 40.0%
!! CAAGAGAGAAGCTAGCTTTA+TGG + chr3_3:2030934-2030953 Msa0438020:intron 40.0%
! AGTTTTCTGTTGCTCATGCA+CGG + chr3_3:2031076-2031095 Msa0438020:five_prime_UTR 40.0%
AATCAAATGACCAGCGAGAA+AGG - chr3_3:2031251-2031270 None:intergenic 40.0%
ACCTGTAGTGTTTGTACTTC+TGG + chr3_3:2031321-2031340 Msa0438020:intron 40.0%
! TCCAGAAGTACAAACACTAC+AGG - chr3_3:2031325-2031344 None:intergenic 40.0%
AGAGTAATCCAATAGCCAGA+TGG + chr3_3:2031412-2031431 Msa0438020:intron 40.0%
CATATATGCCATCTGGCTAT+TGG - chr3_3:2031423-2031442 None:intergenic 40.0%
TGCGGTGGGAAAAGTTATTA+TGG + chr3_3:2031671-2031690 Msa0438020:five_prime_UTR 40.0%
GGTGGGAAAAGTTATTATGG+TGG + chr3_3:2031674-2031693 Msa0438020:five_prime_UTR 40.0%
!! CAAGTTCTAGAGTGAGAAAG+TGG - chr3_3:2031779-2031798 None:intergenic 40.0%
!!! GGAAAGTATATTTTGACGGG+AGG + chr3_3:2031930-2031949 Msa0438020:five_prime_UTR 40.0%
AAGATCGCAAAGTAGTTGCA+TGG + chr3_3:2031985-2032004 Msa0438020:five_prime_UTR 40.0%
AGATCGCAAAGTAGTTGCAT+GGG + chr3_3:2031986-2032005 Msa0438020:five_prime_UTR 40.0%
TAACTCATGGGTAAGTTGCT+TGG + chr3_3:2032019-2032038 Msa0438020:intron 40.0%
!! ACGTATCGATTTGGTTCAGT+TGG + chr3_3:2032174-2032193 Msa0438020:CDS 40.0%
TTCATGTGTCTGTGTAGATC+CGG + chr3_3:2032230-2032249 Msa0438020:intron 40.0%
!! CATCCTATTGGCCTTTGTTA+TGG + chr3_3:2032283-2032302 Msa0438020:intron 40.0%
CAACCATAACAAAGGCCAAT+AGG - chr3_3:2032289-2032308 None:intergenic 40.0%
CCATCTGTCAACCATAACAA+AGG - chr3_3:2032297-2032316 None:intergenic 40.0%
! CCTTTGTTATGGTTGACAGA+TGG + chr3_3:2032294-2032313 Msa0438020:intron 40.0%
! TGTTGATAGAGTGGTACAGT+GGG + chr3_3:2032383-2032402 Msa0438020:intron 40.0%
TCAAATGTTGGGTCTTTGAC+TGG + chr3_3:2032431-2032450 Msa0438020:intron 40.0%
CTCAATTCCAACGTACCATA+AGG - chr3_3:2032621-2032640 None:intergenic 40.0%
CTTATGGTACGTTGGAATTG+AGG + chr3_3:2032619-2032638 Msa0438020:intron 40.0%
ATTGAGGACTTGGAAGACTT+TGG + chr3_3:2032635-2032654 Msa0438020:intron 40.0%
TTGAGGACTTGGAAGACTTT+GGG + chr3_3:2032636-2032655 Msa0438020:intron 40.0%
! TGTTTGAACGAAGGGTTTTG+GGG - chr3_3:2032786-2032805 None:intergenic 40.0%
! GTGTTTGAACGAAGGGTTTT+GGG - chr3_3:2032787-2032806 None:intergenic 40.0%
! TGTGTTTGAACGAAGGGTTT+TGG - chr3_3:2032788-2032807 None:intergenic 40.0%
! GAAGAGTGTGTTTGAACGAA+GGG - chr3_3:2032794-2032813 None:intergenic 40.0%
CAAATTGGTTGGGAACGAAA+GGG - chr3_3:2032929-2032948 None:intergenic 40.0%
TTTCCCTCTCCAAATTGGTT+GGG - chr3_3:2032939-2032958 None:intergenic 40.0%
! TTTTCCCTCTCCAAATTGGT+TGG - chr3_3:2032940-2032959 None:intergenic 40.0%
AACCAATTTGGAGAGGGAAA+AGG + chr3_3:2032939-2032958 Msa0438020:intron 40.0%
TGCCAGTGACTGTTATTGTT+TGG + chr3_3:2033034-2033053 Msa0438020:intron 40.0%
GCCAGTGACTGTTATTGTTT+GGG + chr3_3:2033035-2033054 Msa0438020:intron 40.0%
CCAGTGACTGTTATTGTTTG+GGG + chr3_3:2033036-2033055 Msa0438020:intron 40.0%
ACTGTTATTGTTTGGGGATC+TGG + chr3_3:2033042-2033061 Msa0438020:intron 40.0%
ACAATTGCTTCTATGGGAAC+TGG + chr3_3:2033196-2033215 Msa0438020:CDS 40.0%
AAGTTGGGGATCCAAAAGTT+GGG - chr3_3:2033271-2033290 None:intergenic 40.0%
AAAGTTGGGGATCCAAAAGT+TGG - chr3_3:2033272-2033291 None:intergenic 40.0%
TATCAAGCTAGAAAGTGGCT+CGG - chr3_3:2033414-2033433 None:intergenic 40.0%
! CTTGAGACTAGTTGCTAACA+AGG - chr3_3:2033534-2033553 None:intergenic 40.0%
! CTTGTTAGCAACTAGTCTCA+AGG + chr3_3:2033532-2033551 Msa0438020:CDS 40.0%
CTGATCTTGCTAGAAAGTGA+AGG - chr3_3:2033563-2033582 None:intergenic 40.0%
GCCATTGATAGAACTGTATG+AGG + chr3_3:2033752-2033771 Msa0438020:three_prime_UTR 40.0%
AACAGCCGTTCTGTAATTAC+AGG - chr3_3:2033806-2033825 None:intergenic 40.0%
ATTACAGAACGGCTGTTACT+AGG + chr3_3:2033809-2033828 Msa0438020:three_prime_UTR 40.0%
TGAAATTGGTCCTTGGAGAT+CGG + chr3_3:2033861-2033880 Msa0438020:three_prime_UTR 40.0%
!! TTCAAAAGTACCGATCTCCA+AGG - chr3_3:2033874-2033893 None:intergenic 40.0%
TGTATTGCATAAATCTGGGG+AGG + chr3_3:2033942-2033961 Msa0438020:three_prime_UTR 40.0%
GTATTGCATAAATCTGGGGA+GGG + chr3_3:2033943-2033962 Msa0438020:three_prime_UTR 40.0%
GAAAGCGAAGCCATTGTTTC+AGG + chr3_3:2028033-2028052 Msa0438020:five_prime_UTR 45.0%
AACAAACGGTAACATGACGG+CGG + chr3_3:2028118-2028137 Msa0438020:five_prime_UTR 45.0%
GGTAACCCTAGCACATCTTA+AGG + chr3_3:2028872-2028891 Msa0438020:intron 45.0%
GCTTCTCCTTAAGATGTGCT+AGG - chr3_3:2028881-2028900 None:intergenic 45.0%
AAACTCGAAGACGATGCAGT+CGG - chr3_3:2028917-2028936 None:intergenic 45.0%
!! TCGAGTTTTAGTGCAAGCAG+TGG + chr3_3:2028929-2028948 Msa0438020:five_prime_UTR 45.0%
TTAGTGCAAGCAGTGGAGTA+CGG + chr3_3:2028936-2028955 Msa0438020:five_prime_UTR 45.0%
TCCTCCTAACAATCTAGCTG+CGG - chr3_3:2028966-2028985 None:intergenic 45.0%
! AGGAGGAAGTAATGGAAACC+GGG + chr3_3:2028979-2028998 Msa0438020:five_prime_UTR 45.0%
GGTAGTAGCAAAAGCAATGG+TGG + chr3_3:2029025-2029044 Msa0438020:five_prime_UTR 45.0%
ACCAATCGAACCAATCCTAC+TGG - chr3_3:2029053-2029072 None:intergenic 45.0%
CGGGATTCGAATTACTGAAG+TGG - chr3_3:2029283-2029302 None:intergenic 45.0%
TAGCATCCTGATCAAATGCG+TGG - chr3_3:2029310-2029329 None:intergenic 45.0%
CGCATTTGATCAGGATGCTA+AGG + chr3_3:2029310-2029329 Msa0438020:five_prime_UTR 45.0%
TTGATCAGGATGCTAAGGAC+GGG + chr3_3:2029315-2029334 Msa0438020:five_prime_UTR 45.0%
GACGGGCATGATTTACTCAT+AGG + chr3_3:2029332-2029351 Msa0438020:five_prime_UTR 45.0%
GTCACTGAGACAGCAATTAC+AGG + chr3_3:2029478-2029497 Msa0438020:five_prime_UTR 45.0%
GCCCACCATTACAACAAAGA+TGG + chr3_3:2029524-2029543 Msa0438020:five_prime_UTR 45.0%
TACACGTACTGCTGCCAAAA+GGG + chr3_3:2029669-2029688 Msa0438020:intron 45.0%
ACAGTTGCTTGTGATGGTAG+TGG + chr3_3:2030005-2030024 Msa0438020:intron 45.0%
TGTTGAGATCCGTACCTTGT+CGG + chr3_3:2030130-2030149 Msa0438020:intron 45.0%
GAGAGATTACCGACAAGGTA+CGG - chr3_3:2030142-2030161 None:intergenic 45.0%
GACACGGATAGCCAAATCAT+GGG - chr3_3:2030192-2030211 None:intergenic 45.0%
TGACACGGATAGCCAAATCA+TGG - chr3_3:2030193-2030212 None:intergenic 45.0%
ACATGTATTTCTTGGGTGCC+TGG + chr3_3:2030838-2030857 Msa0438020:five_prime_UTR 45.0%
! GAATTTTGCACCTTTCTCGC+TGG + chr3_3:2031238-2031257 Msa0438020:intron 45.0%
GGTGCATACTTAGCAACTGT+TGG + chr3_3:2031480-2031499 Msa0438020:five_prime_UTR 45.0%
TTAGCAACTGTTGGACGAGA+TGG + chr3_3:2031489-2031508 Msa0438020:five_prime_UTR 45.0%
AAAGAACACCTTGTATGCGG+TGG + chr3_3:2031656-2031675 Msa0438020:five_prime_UTR 45.0%
AAGAACACCTTGTATGCGGT+GGG + chr3_3:2031657-2031676 Msa0438020:five_prime_UTR 45.0%
! AACTTTTCCCACCGCATACA+AGG - chr3_3:2031667-2031686 None:intergenic 45.0%
GCTTGGAGGTGAGATATGTT+TGG + chr3_3:2031710-2031729 Msa0438020:intron 45.0%
AAAACTCTGCTTTGGCAGCA+TGG + chr3_3:2031905-2031924 Msa0438020:intron 45.0%
GATCGCAAAGTAGTTGCATG+GGG + chr3_3:2031987-2032006 Msa0438020:five_prime_UTR 45.0%
AAAGTAGTTGCATGGGGTGA+GGG + chr3_3:2031993-2032012 Msa0438020:five_prime_UTR 45.0%
AAATGCTGTGATCAGGTCAG+TGG + chr3_3:2032093-2032112 Msa0438020:CDS 45.0%
!! TCGATTTGGTTCAGTTGGTC+AGG + chr3_3:2032179-2032198 Msa0438020:CDS 45.0%
! GTGTTGATAGAGTGGTACAG+TGG + chr3_3:2032382-2032401 Msa0438020:intron 45.0%
AGTTTCCATGGTGCCTTACT+AGG - chr3_3:2032488-2032507 None:intergenic 45.0%
GTACGTTGGAATTGAGGACT+TGG + chr3_3:2032625-2032644 Msa0438020:intron 45.0%
! AGGGGGGTAATGTTCGTTTT+CGG + chr3_3:2032665-2032684 Msa0438020:intron 45.0%
!!! GGGTTTTGGGGAAAAGAAAG+AGG - chr3_3:2032774-2032793 None:intergenic 45.0%
! CGAAGAGTGTGTTTGAACGA+AGG - chr3_3:2032795-2032814 None:intergenic 45.0%
CCAAATTGGTTGGGAACGAA+AGG - chr3_3:2032930-2032949 None:intergenic 45.0%
CCTTTCGTTCCCAACCAATT+TGG + chr3_3:2032927-2032946 Msa0438020:intron 45.0%
GTTCCCAACCAATTTGGAGA+GGG + chr3_3:2032933-2032952 Msa0438020:intron 45.0%
! AGCCTTTTCCCTCTCCAAAT+TGG - chr3_3:2032944-2032963 None:intergenic 45.0%
CCCCAAACAATAACAGTCAC+TGG - chr3_3:2033039-2033058 None:intergenic 45.0%
GCTTCTATGGGAACTGGAAA+TGG + chr3_3:2033202-2033221 Msa0438020:CDS 45.0%
AGTTGGGGATCCAAAAGTTG+GGG - chr3_3:2033270-2033289 None:intergenic 45.0%
GCTTCCAGCACTAAAAGTTG+GGG - chr3_3:2033285-2033304 None:intergenic 45.0%
GGCTTCCAGCACTAAAAGTT+GGG - chr3_3:2033286-2033305 None:intergenic 45.0%
TGGCTTCCAGCACTAAAAGT+TGG - chr3_3:2033287-2033306 None:intergenic 45.0%
! TTTGGAACATCCCGCATACT+TGG - chr3_3:2033359-2033378 None:intergenic 45.0%
TGTTCCAAAAATCTCTCCGC+TGG + chr3_3:2033370-2033389 Msa0438020:CDS 45.0%
GGCTGTGAGTACAGATTCTT+GGG - chr3_3:2033441-2033460 None:intergenic 45.0%
AGGCTGTGAGTACAGATTCT+TGG - chr3_3:2033442-2033461 None:intergenic 45.0%
ATCAAAATCTGGACGAGACC+TGG + chr3_3:2033476-2033495 Msa0438020:CDS 45.0%
AACAAGGTTTCGGAGTTGCT+TGG - chr3_3:2033518-2033537 None:intergenic 45.0%
! TTGTTGATCTTTTACCCGGC+TGG + chr3_3:2033652-2033671 Msa0438020:three_prime_UTR 45.0%
CGTTCTGTAATTACAGGAGG+CGG - chr3_3:2033800-2033819 None:intergenic 45.0%
CGCCTCCTGTAATTACAGAA+CGG + chr3_3:2033798-2033817 Msa0438020:three_prime_UTR 45.0%
AGCCGTTCTGTAATTACAGG+AGG - chr3_3:2033803-2033822 None:intergenic 45.0%
!!! TAATAAATTTATAACTTTTT+TGG + chr3_3:2028732-2028751 Msa0438020:intron 5.0%
!!! TTTAAATGAAATATTTTAAA+AGG - chr3_3:2031860-2031879 None:intergenic 5.0%
AGAAGTTTCGTTGGGTGAGC+AGG + chr3_3:2028851-2028870 Msa0438020:intron 50.0%
TCAGCCGCAGCTAGATTGTT+AGG + chr3_3:2028959-2028978 Msa0438020:five_prime_UTR 50.0%
! AAAGCAATGGTGGAGCCAGT+AGG + chr3_3:2029035-2029054 Msa0438020:five_prime_UTR 50.0%
! AATGGTGGAGCCAGTAGGAT+TGG + chr3_3:2029040-2029059 Msa0438020:five_prime_UTR 50.0%
!! GCCAGTAGGATTGGTTCGAT+TGG + chr3_3:2029049-2029068 Msa0438020:five_prime_UTR 50.0%
CACCGAACTACTCAAACTCG+AGG - chr3_3:2029077-2029096 None:intergenic 50.0%
CTCGAGTTTGAGTAGTTCGG+TGG + chr3_3:2029075-2029094 Msa0438020:five_prime_UTR 50.0%
TGATCAAATGCGTGGCACAC+GGG - chr3_3:2029302-2029321 None:intergenic 50.0%
CTGATCAAATGCGTGGCACA+CGG - chr3_3:2029303-2029322 None:intergenic 50.0%
ATAGGGTTGTTCTCTGGCGA+TGG + chr3_3:2029350-2029369 Msa0438020:five_prime_UTR 50.0%
GTACACGTACTGCTGCCAAA+AGG + chr3_3:2029668-2029687 Msa0438020:intron 50.0%
ACACGTACTGCTGCCAAAAG+GGG + chr3_3:2029670-2029689 Msa0438020:intron 50.0%
GACAAGGTACGGATCTCAAC+AGG - chr3_3:2030131-2030150 None:intergenic 50.0%
TGTATTTCTTGGGTGCCTGG+AGG + chr3_3:2030841-2030860 Msa0438020:five_prime_UTR 50.0%
!! ACAAAAGCACCATCACCTCC+AGG - chr3_3:2030859-2030878 None:intergenic 50.0%
GATTGGGAATGAAGACTCGC+CGG - chr3_3:2031040-2031059 None:intergenic 50.0%
TGCTCATGCACGGTACAGTA+AGG + chr3_3:2031086-2031105 Msa0438020:five_prime_UTR 50.0%
AGCCAGATGGCATATATGCC+AGG + chr3_3:2031425-2031444 Msa0438020:five_prime_UTR 50.0%
GCCAGATGGCATATATGCCA+GGG + chr3_3:2031426-2031445 Msa0438020:five_prime_UTR 50.0%
ACCCTGGCATATATGCCATC+TGG - chr3_3:2031430-2031449 None:intergenic 50.0%
TCGAACACTCGCAAGTAACC+TGG - chr3_3:2031629-2031648 None:intergenic 50.0%
CAAAGTAGTTGCATGGGGTG+AGG + chr3_3:2031992-2032011 Msa0438020:five_prime_UTR 50.0%
GGGTGAGGGACATAACTCAT+GGG + chr3_3:2032007-2032026 Msa0438020:exon 50.0%
GGTTCAGTTGGTCAGGTACT+CGG + chr3_3:2032186-2032205 Msa0438020:intron 50.0%
! ACATGCCTAGTAAGGCACCA+TGG + chr3_3:2032480-2032499 Msa0438020:intron 50.0%
GACTTGGAAGACTTTGGGCA+GGG + chr3_3:2032641-2032660 Msa0438020:intron 50.0%
ACTTGGAAGACTTTGGGCAG+GGG + chr3_3:2032642-2032661 Msa0438020:intron 50.0%
CGTTCCCAACCAATTTGGAG+AGG + chr3_3:2032932-2032951 Msa0438020:intron 50.0%
ACGAGATTGTAGTGCCCTTG+AGG + chr3_3:2033225-2033244 Msa0438020:CDS 50.0%
AAAAGTTGGGGATCCACCAG+GGG - chr3_3:2033258-2033277 None:intergenic 50.0%
CAAAAGTTGGGGATCCACCA+GGG - chr3_3:2033259-2033278 None:intergenic 50.0%
! GGATCCCCAACTTTTAGTGC+TGG + chr3_3:2033278-2033297 Msa0438020:CDS 50.0%
TGGAAGCCAGTCATCGCATT+GGG + chr3_3:2033298-2033317 Msa0438020:CDS 50.0%
CATTGTCCCAATGCGATGAC+TGG - chr3_3:2033307-2033326 None:intergenic 50.0%
TTGGGACAATGCAGTCCCAT+TGG + chr3_3:2033316-2033335 Msa0438020:CDS 50.0%
TGGGACAATGCAGTCCCATT+GGG + chr3_3:2033317-2033336 Msa0438020:CDS 50.0%
! CAGGCTGTAAGGTACCCAAT+GGG - chr3_3:2033334-2033353 None:intergenic 50.0%
CATACTTGGAGCAGGCTGTA+AGG - chr3_3:2033345-2033364 None:intergenic 50.0%
TACAGCCTGCTCCAAGTATG+CGG + chr3_3:2033345-2033364 Msa0438020:CDS 50.0%
! GCTACCAGCGGAGAGATTTT+TGG - chr3_3:2033377-2033396 None:intergenic 50.0%
!! AAAGTGGCTCGGTATGCACA+CGG - chr3_3:2033403-2033422 None:intergenic 50.0%
AATCTGTACTCACAGCCTGC+CGG + chr3_3:2033444-2033463 Msa0438020:CDS 50.0%
!! AGATTTTGATGTGCCCCTCC+CGG - chr3_3:2033466-2033485 None:intergenic 50.0%
CTGTAATTACAGGAGGCGGT+TGG - chr3_3:2033796-2033815 None:intergenic 50.0%
GACGATGCAGTCGGAGTTGA+AGG - chr3_3:2028908-2028927 None:intergenic 55.0%
GCCGCAGCTAGATTGTTAGG+AGG + chr3_3:2028962-2028981 Msa0438020:five_prime_UTR 55.0%
!! AACCGGGCGCTTAGCTTTGT+TGG + chr3_3:2028995-2029014 Msa0438020:five_prime_UTR 55.0%
CACCAACAAAGCTAAGCGCC+CGG - chr3_3:2029000-2029019 None:intergenic 55.0%
CGTGTGCCACGCATTTGATC+AGG + chr3_3:2029301-2029320 Msa0438020:five_prime_UTR 55.0%
CTCTGCTTTGGCAGCATGGA+CGG + chr3_3:2031909-2031928 Msa0438020:intron 55.0%
GGGGTGAGGGACATAACTCA+TGG + chr3_3:2032006-2032025 Msa0438020:exon 55.0%
CTGTGATCAGGTCAGTGGAG+TGG + chr3_3:2032098-2032117 Msa0438020:CDS 55.0%
GGACTTGGAAGACTTTGGGC+AGG + chr3_3:2032640-2032659 Msa0438020:intron 55.0%
ATTGTAGTGCCCTTGAGGCG+AGG + chr3_3:2033230-2033249 Msa0438020:CDS 55.0%
AAAGTTGGGGATCCACCAGG+GGG - chr3_3:2033257-2033276 None:intergenic 55.0%
CCAAAAGTTGGGGATCCACC+AGG - chr3_3:2033260-2033279 None:intergenic 55.0%
!! CCTGGTGGATCCCCAACTTT+TGG + chr3_3:2033257-2033276 Msa0438020:CDS 55.0%
CTGGAAGCCAGTCATCGCAT+TGG + chr3_3:2033297-2033316 Msa0438020:CDS 55.0%
! GCAGGCTGTAAGGTACCCAA+TGG - chr3_3:2033335-2033354 None:intergenic 55.0%
ACAGCCTGCTCCAAGTATGC+GGG + chr3_3:2033346-2033365 Msa0438020:CDS 55.0%
ACATCCCGCATACTTGGAGC+AGG - chr3_3:2033353-2033372 None:intergenic 55.0%
ATCTGTACTCACAGCCTGCC+GGG + chr3_3:2033445-2033464 Msa0438020:CDS 55.0%
! GGGAGGGGCACATCAAAATC+TGG + chr3_3:2033465-2033484 Msa0438020:CDS 55.0%
AGGTTTCGGAGTTGCTTGGC+TGG - chr3_3:2033514-2033533 None:intergenic 55.0%
GACGGCGGCGTCATCTTCAT+CGG + chr3_3:2028133-2028152 Msa0438020:five_prime_UTR 60.0%
ACGGCGGCGTCATCTTCATC+GGG + chr3_3:2028134-2028153 Msa0438020:five_prime_UTR 60.0%
TGCAGTCGGAGTTGAAGGCG+CGG - chr3_3:2028903-2028922 None:intergenic 60.0%
!! CGGGCGCTTAGCTTTGTTGG+TGG + chr3_3:2028998-2029017 Msa0438020:five_prime_UTR 60.0%
TGGGTTCGCCGCTTCATCCA+AGG + chr3_3:2029223-2029242 Msa0438020:intron 60.0%
TCTTGGGTGCCTGGAGGTGA+TGG + chr3_3:2030847-2030866 Msa0438020:five_prime_UTR 60.0%
TGGAAGACTTTGGGCAGGGG+AGG + chr3_3:2032645-2032664 Msa0438020:intron 60.0%
GGAAGACTTTGGGCAGGGGA+GGG + chr3_3:2032646-2032665 Msa0438020:intron 60.0%
GAAGACTTTGGGCAGGGGAG+GGG + chr3_3:2032647-2032666 Msa0438020:intron 60.0%
AAGACTTTGGGCAGGGGAGG+GGG + chr3_3:2032648-2032667 Msa0438020:intron 60.0%
TGCACACGGTGAGCTACCAG+CGG - chr3_3:2033389-2033408 None:intergenic 60.0%
AGACTTTGGGCAGGGGAGGG+GGG + chr3_3:2032649-2032668 Msa0438020:intron 65.0%
TGTACTCACAGCCTGCCGGG+AGG + chr3_3:2033448-2033467 Msa0438020:CDS 65.0%
GTACTCACAGCCTGCCGGGA+GGG + chr3_3:2033449-2033468 Msa0438020:CDS 65.0%
TACTCACAGCCTGCCGGGAG+GGG + chr3_3:2033450-2033469 Msa0438020:CDS 65.0%
TTTGATGTGCCCCTCCCGGC+AGG - chr3_3:2033462-2033481 None:intergenic 65.0%
CCAGGGGGACCTCGCCTCAA+GGG - chr3_3:2033242-2033261 None:intergenic 70.0%
ACCAGGGGGACCTCGCCTCA+AGG - chr3_3:2033243-2033262 None:intergenic 70.0%
TTGAGGCGAGGTCCCCCTGG+TGG + chr3_3:2033242-2033261 Msa0438020:CDS 70.0%
! GGCTGGCTCTCAGCTACGCC+AGG - chr3_3:2033497-2033516 None:intergenic 70.0%
CCCTTGAGGCGAGGTCCCCC+TGG + chr3_3:2033239-2033258 Msa0438020:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 2027970 2034089 2027970 ID=Msa0438020;Name=Msa0438020
chr3_3 mRNA 2027970 2034089 2027970 ID=Msa0438020-mRNA-1;Parent=Msa0438020;Name=Msa0438020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=1311|0.9|0.90|1|1|0.90|11|485|177
chr3_3 exon 2027970 2028304 2027970 ID=Msa0438020-mRNA-1:exon:419;Parent=Msa0438020-mRNA-1
chr3_3 exon 2028873 2029186 2028873 ID=Msa0438020-mRNA-1:exon:420;Parent=Msa0438020-mRNA-1
chr3_3 exon 2029263 2029371 2029263 ID=Msa0438020-mRNA-1:exon:421;Parent=Msa0438020-mRNA-1
chr3_3 exon 2029468 2029561 2029468 ID=Msa0438020-mRNA-1:exon:422;Parent=Msa0438020-mRNA-1
chr3_3 exon 2030831 2030918 2030831 ID=Msa0438020-mRNA-1:exon:423;Parent=Msa0438020-mRNA-1
chr3_3 exon 2031024 2031107 2031024 ID=Msa0438020-mRNA-1:exon:424;Parent=Msa0438020-mRNA-1
chr3_3 exon 2031414 2031510 2031414 ID=Msa0438020-mRNA-1:exon:425;Parent=Msa0438020-mRNA-1
chr3_3 exon 2031630 2031717 2031630 ID=Msa0438020-mRNA-1:exon:426;Parent=Msa0438020-mRNA-1
chr3_3 exon 2031923 2032028 2031923 ID=Msa0438020-mRNA-1:exon:427;Parent=Msa0438020-mRNA-1
chr3_3 exon 2032085 2032200 2032085 ID=Msa0438020-mRNA-1:exon:428;Parent=Msa0438020-mRNA-1
chr3_3 exon 2033191 2034089 2033191 ID=Msa0438020-mRNA-1:exon:429;Parent=Msa0438020-mRNA-1
chr3_3 five_prime_UTR 2027970 2028304 2027970 ID=Msa0438020-mRNA-1:five_prime_utr;Parent=Msa0438020-mRNA-1
chr3_3 five_prime_UTR 2028873 2029186 2028873 ID=Msa0438020-mRNA-1:five_prime_utr;Parent=Msa0438020-mRNA-1
chr3_3 five_prime_UTR 2029263 2029371 2029263 ID=Msa0438020-mRNA-1:five_prime_utr;Parent=Msa0438020-mRNA-1
chr3_3 five_prime_UTR 2029468 2029561 2029468 ID=Msa0438020-mRNA-1:five_prime_utr;Parent=Msa0438020-mRNA-1
chr3_3 five_prime_UTR 2030831 2030918 2030831 ID=Msa0438020-mRNA-1:five_prime_utr;Parent=Msa0438020-mRNA-1
chr3_3 five_prime_UTR 2031024 2031107 2031024 ID=Msa0438020-mRNA-1:five_prime_utr;Parent=Msa0438020-mRNA-1
chr3_3 five_prime_UTR 2031414 2031510 2031414 ID=Msa0438020-mRNA-1:five_prime_utr;Parent=Msa0438020-mRNA-1
chr3_3 five_prime_UTR 2031630 2031717 2031630 ID=Msa0438020-mRNA-1:five_prime_utr;Parent=Msa0438020-mRNA-1
chr3_3 five_prime_UTR 2031923 2032024 2031923 ID=Msa0438020-mRNA-1:five_prime_utr;Parent=Msa0438020-mRNA-1
chr3_3 CDS 2032025 2032028 2032025 ID=Msa0438020-mRNA-1:cds;Parent=Msa0438020-mRNA-1
chr3_3 CDS 2032085 2032200 2032085 ID=Msa0438020-mRNA-1:cds;Parent=Msa0438020-mRNA-1
chr3_3 CDS 2033191 2033604 2033191 ID=Msa0438020-mRNA-1:cds;Parent=Msa0438020-mRNA-1
chr3_3 three_prime_UTR 2033605 2034089 2033605 ID=Msa0438020-mRNA-1:three_prime_utr;Parent=Msa0438020-mRNA-1
Gene Sequence

>Msa0438020

ATGGTTTATGTCAAATGCTGTGATCAGGTCAGTGGAGTGGCTTTTGATTCATATTGGTCATCACCAAATTCAAATGACAATGGAGAGACAATTACGTATCGATTTGGTTCAGTTGGTCAGGATACACAATTGCTTCTATGGGAACTGGAAATGGACGAGATTGTAGTGCCCTTGAGGCGAGGTCCCCCTGGTGGATCCCCAACTTTTGGATCCCCAACTTTTAGTGCTGGAAGCCAGTCATCGCATTGGGACAATGCAGTCCCATTGGGTACCTTACAGCCTGCTCCAAGTATGCGGGATGTTCCAAAAATCTCTCCGCTGGTAGCTCACCGTGTGCATACCGAGCCACTTTCTAGCTTGATATTTACCCAAGAATCTGTACTCACAGCCTGCCGGGAGGGGCACATCAAAATCTGGACGAGACCTGGCGTAGCTGAGAGCCAGCCAAGCAACTCCGAAACCTTGTTAGCAACTAGTCTCAAGGATAAGCCTTCACTTTCTAGCAAGATCAGCAATTCTATCTACAAACAATAA
Protein sequence

>Msa0438020

MVYVKCCDQVSGVAFDSYWSSPNSNDNGETITYRFGSVGQDTQLLLWELEMDEIVVPLRRGPPGGSPTFGSPTFSAGSQSSHWDNAVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSSLIFTQESVLTACREGHIKIWTRPGVAESQPSNSETLLATSLKDKPSLSSKISNSIYKQ*