AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349720 MtrunA17_Chr3g0090071 89.435 407 26 2 1 406 1 391 0.0 637
Msa1349720 MtrunA17_Chr4g0020011 71.803 305 68 2 103 405 92 380 1.51e-158 451
Msa1349720 MtrunA17_Chr4g0039291 61.149 296 97 2 109 402 109 388 5.65e-128 374
Msa1349720 MtrunA17_Chr3g0114241 34.084 311 170 8 106 402 427 716 5.55e-47 171
Msa1349720 MtrunA17_Chr2g0320711 25.418 299 194 6 113 402 157 435 1.61e-26 110
Msa1349720 MtrunA17_Chr7g0240091 27.049 244 157 4 163 402 222 448 3.59e-22 97.8
Msa1349720 MtrunA17_Chr7g0245291 28.226 248 147 6 158 403 108 326 2.96e-20 91.3
Msa1349720 MtrunA17_Chr7g0245261 28.340 247 146 7 158 402 101 318 2.23e-17 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349720 AT5G12470.1 60.328 305 103 2 101 403 96 384 7.52e-132 384
Msa1349720 AT3G56140.2 34.921 315 170 8 106 406 200 493 2.01e-50 178
Msa1349720 AT2G40400.2 35.873 315 167 8 106 406 410 703 1.07e-49 179
Msa1349720 AT2G40400.1 35.873 315 167 8 106 406 410 703 1.07e-49 179
Msa1349720 AT3G56140.1 34.921 315 170 8 106 406 419 712 2.96e-49 178
Msa1349720 AT3G56140.3 34.921 315 170 8 106 406 419 712 2.96e-49 178
Msa1349720 AT2G40400.3 35.249 261 135 7 106 352 410 650 4.71e-35 137
Msa1349720 AT5G22790.1 26.073 303 188 8 113 402 154 433 4.10e-24 103
Msa1349720 AT2G37860.3 26.621 293 176 9 124 402 165 432 1.04e-23 102
Msa1349720 AT2G37860.4 26.621 293 176 9 124 402 165 432 1.04e-23 102
Msa1349720 AT3G08640.1 28.226 248 145 6 162 405 107 325 5.77e-20 90.5
Msa1349720 AT3G08630.1 27.888 251 142 7 162 405 104 322 9.27e-20 90.1
Msa1349720 AT5G24690.1 24.609 256 152 7 113 355 180 407 2.72e-11 65.5

Find 138 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAAATTTGGAGGGTTTA+AGG 0.142353 tig0010977:+30008 Msa1349720:CDS
TCAGAACTGCTAATACTTAT+TGG 0.156499 tig0010977:+33138 Msa1349720:CDS
TTCAGATGGTTGTTAAAATT+TGG 0.178114 tig0010977:+29997 Msa1349720:CDS
CTTATTGCCAAATTCTTCTA+TGG 0.222326 tig0010977:+31892 Msa1349720:CDS
AATTATTGAGCAACGGATTC+TGG 0.230169 tig0010977:+33064 Msa1349720:CDS
GTTAAGGCGGGGCGGGTTCC+TGG 0.231023 tig0010977:+29931 Msa1349720:CDS
GGCAATAAGTCCAGCACTTA+TGG 0.234980 tig0010977:-31878 None:intergenic
GGGAGTGGAGGTGGTGGTGG+TGG 0.236269 tig0010977:+29790 Msa1349720:CDS
AGGACATCCATAGAAGAATT+TGG 0.239459 tig0010977:-31899 None:intergenic
CAGAACTGCTAATACTTATT+GGG 0.244345 tig0010977:+33139 Msa1349720:CDS
GGTGGGGATGACGGTGGAGG+TGG 0.255642 tig0010977:+29808 Msa1349720:CDS
GGAGAGATTTCCGGCGGATT+TGG 0.270043 tig0010977:+29900 Msa1349720:CDS
CCTATGGCTTGGCATGAAAA+TGG 0.277233 tig0010977:-29713 None:intergenic
CATGTAAAATAACAGAATTT+TGG 0.283962 tig0010977:-33487 None:intergenic
TTGGTTAAGCCTTTATCTTC+TGG 0.287578 tig0010977:-33295 None:intergenic
GGAAATGGAGGCGGGTTTCC+AGG 0.296038 tig0010977:+29769 Msa1349720:CDS
AGAAGAGGCAATGCTGGTTT+TGG 0.304142 tig0010977:+29858 Msa1349720:CDS
GTTACTTTATCTTAGGTAAC+AGG 0.304911 tig0010977:+31790 Msa1349720:intron
ATGGCTGTAGTGATAGAAAT+TGG 0.311317 tig0010977:-29602 None:intergenic
CATCTCTTATGCAGCGTAAC+GGG 0.313556 tig0010977:+32234 Msa1349720:intron
GTTCTTAACTAAGCTTGTTA+TGG 0.322891 tig0010977:+30053 Msa1349720:CDS
TAGGTAACAGGCATTGTAAC+AGG 0.333404 tig0010977:+31802 Msa1349720:intron
AGAGAAAGAGAGAGATTAGT+TGG 0.340765 tig0010977:-29505 None:intergenic
GAGTGGAGGTGGTGGTGGTG+GGG 0.343485 tig0010977:+29792 Msa1349720:CDS
TGACGGTGGAGGTGGGGAAG+AGG 0.347448 tig0010977:+29816 Msa1349720:CDS
GGATTTGGCTGTTGCTGTTA+AGG 0.361357 tig0010977:+29915 Msa1349720:CDS
CGGAGAGGGGCCAGCCTAGT+TGG 0.364565 tig0010977:-33573 None:intergenic
ATGTCTTTCTCAGCTGGAAA+TGG 0.367192 tig0010977:+29754 Msa1349720:CDS
GTGGGGATGACGGTGGAGGT+GGG 0.369443 tig0010977:+29809 Msa1349720:CDS
GGTGGTGGTGGTGGGGATGA+CGG 0.370212 tig0010977:+29799 Msa1349720:CDS
CAGTTAGTATAAGTTTGTTT+TGG 0.370260 tig0010977:-33100 None:intergenic
GGAGTGGAGGTGGTGGTGGT+GGG 0.372420 tig0010977:+29791 Msa1349720:CDS
AAGCCATAGGCTTCATTCTC+CGG 0.376602 tig0010977:+29726 Msa1349720:CDS
CCAGGGAGTGGAGGTGGTGG+TGG 0.377091 tig0010977:+29787 Msa1349720:CDS
GCTACACTGGTTGAGATTAC+AGG 0.377802 tig0010977:-32744 None:intergenic
CAAAACAAACTTATACTAAC+TGG 0.384571 tig0010977:+33101 Msa1349720:CDS
AAAGAGAGAGATTAGTTGGT+TGG 0.388079 tig0010977:-29501 None:intergenic
TTGATGCCCAACCTATCTAT+TGG 0.394434 tig0010977:-33534 None:intergenic
TGGGGATGACGGTGGAGGTG+GGG 0.396815 tig0010977:+29810 Msa1349720:CDS
ATCTCAACCAGTGTAGCATA+TGG 0.402251 tig0010977:+32750 Msa1349720:CDS
GGGTTTCCAGGGAGTGGAGG+TGG 0.402523 tig0010977:+29781 Msa1349720:CDS
TGTTGCTGTTAAGGCGGGGC+GGG 0.402815 tig0010977:+29924 Msa1349720:CDS
GGTGGTGGTGGGGATGACGG+TGG 0.403074 tig0010977:+29802 Msa1349720:CDS
GGTGGTGGGGATGACGGTGG+AGG 0.405558 tig0010977:+29805 Msa1349720:CDS
GAGGTGGGGAAGAGGAAGAA+AGG 0.408212 tig0010977:+29824 Msa1349720:CDS
GTTTCCATGTCTTTCTCAGC+TGG 0.410252 tig0010977:+29748 Msa1349720:CDS
TTGGCTGTTGCTGTTAAGGC+GGG 0.411375 tig0010977:+29919 Msa1349720:CDS
AGAGAGATTAGTTGGTTGGT+TGG 0.418117 tig0010977:-29497 None:intergenic
ATTGTCGATACAGGTGGCTT+TGG 0.425183 tig0010977:+32105 Msa1349720:intron
TTTCCAGGGAGTGGAGGTGG+TGG 0.425609 tig0010977:+29784 Msa1349720:CDS
TTCTCAGCTGGAAATGGAGG+CGG 0.427030 tig0010977:+29760 Msa1349720:CDS
TAGGTCGATGGAGAGATTTC+CGG 0.435176 tig0010977:+29891 Msa1349720:CDS
TATGAGTTCAATTCAAAGCT+TGG 0.435296 tig0010977:+33351 Msa1349720:three_prime_UTR
GGCGGGTTTCCAGGGAGTGG+AGG 0.439477 tig0010977:+29778 Msa1349720:CDS
GGAGAGGGGCCAGCCTAGTT+GGG 0.445324 tig0010977:-33572 None:intergenic
CATAAGCCAATAGATAGGTT+GGG 0.446433 tig0010977:+33528 Msa1349720:three_prime_UTR
TCATAAGCCAATAGATAGGT+TGG 0.448341 tig0010977:+33527 Msa1349720:three_prime_UTR
AGGGTTTAAGGAAAGGTTGT+TGG 0.448786 tig0010977:+30020 Msa1349720:CDS
TCGATACAGGTGGCTTTGGC+AGG 0.461973 tig0010977:+32109 Msa1349720:intron
GAACAAGTGTGTTGAAATGT+TGG 0.464025 tig0010977:-29557 None:intergenic
ACAAAGAATAGGTGCTATAG+TGG 0.469138 tig0010977:+32150 Msa1349720:CDS
AGTTGGAACCGGTGCTTCAC+TGG 0.470168 tig0010977:+32271 Msa1349720:CDS
TCTTTCTCTCAATACTCAAA+TGG 0.471402 tig0010977:+29519 Msa1349720:exon
GGCAGAGGAATGATTGAGCT+TGG 0.471795 tig0010977:-29683 None:intergenic
AAATGGAGGGTCTAAGTGTA+GGG 0.471840 tig0010977:-29464 None:intergenic
AGAAGAATGTGCAAACTTCA+TGG 0.477530 tig0010977:-29657 None:intergenic
CCACCACCACCTCCACTCCC+TGG 0.480197 tig0010977:-29787 None:intergenic
AACTTCATGGCGGGCTGTGA+TGG 0.484365 tig0010977:-29644 None:intergenic
GCTGAGAAAGACATGGAAAC+CGG 0.489178 tig0010977:-29745 None:intergenic
TATACACTTCTACAAAGAAT+AGG 0.490986 tig0010977:+32139 Msa1349720:CDS
AGAAAATTTCACTAAAGAGA+TGG 0.492493 tig0010977:+30874 Msa1349720:CDS
AAAATGGAGGGTCTAAGTGT+AGG 0.493939 tig0010977:-29465 None:intergenic
GGGGCAAAGCTGTTCGTAGT+TGG 0.495711 tig0010977:+32254 Msa1349720:CDS
TGCCTTGATCAATGCACAAA+AGG 0.497042 tig0010977:+32689 Msa1349720:CDS
CTATGGCTTGGCATGAAAAT+GGG 0.499733 tig0010977:-29712 None:intergenic
GGTTGGAGTCCAGAAGATAA+AGG 0.501111 tig0010977:+33286 Msa1349720:CDS
GGAGGCGGGTTTCCAGGGAG+TGG 0.502191 tig0010977:+29775 Msa1349720:CDS
AAGCTGTTCGTAGTTGGAAC+CGG 0.502348 tig0010977:+32260 Msa1349720:CDS
AAATAGAGAAGAGGCAATGC+TGG 0.504483 tig0010977:+29852 Msa1349720:CDS
TCTCAATACTCAAATGGCTA+TGG 0.507583 tig0010977:+29525 Msa1349720:exon
AGGTGGGGAAGAGGAAGAAA+GGG 0.508679 tig0010977:+29825 Msa1349720:CDS
AATAGATAGGTTGGGCATCA+AGG 0.508818 tig0010977:+33536 Msa1349720:three_prime_UTR
AGATGGTTGTTAAAATTTGG+AGG 0.512940 tig0010977:+30000 Msa1349720:CDS
GGCTGAGGCTGGTAGGTCGA+TGG 0.513465 tig0010977:+29879 Msa1349720:CDS
TTAAGAGAAACAGTGGGAGC+AGG 0.517008 tig0010977:-31844 None:intergenic
CCTCCTCCTGCCATAAGTGC+TGG 0.517428 tig0010977:+31868 Msa1349720:CDS
GAAATGGAGGCGGGTTTCCA+GGG 0.520597 tig0010977:+29770 Msa1349720:CDS
TGTGAGAATCCCAACTAGGC+TGG 0.520618 tig0010977:+33563 Msa1349720:three_prime_UTR
GAAAATGGGTGCAGAGGCAG+AGG 0.523469 tig0010977:-29698 None:intergenic
TCAGATATGGACCACTAGCT+TGG 0.525694 tig0010977:+30461 Msa1349720:intron
TCTCAGCTGGAAATGGAGGC+GGG 0.526129 tig0010977:+29761 Msa1349720:CDS
GATGGTTGTTAAAATTTGGA+GGG 0.533288 tig0010977:+30001 Msa1349720:CDS
TTTGGCTGTTGCTGTTAAGG+CGG 0.535226 tig0010977:+29918 Msa1349720:CDS
CGTGTATACCAGTGAAGCAC+CGG 0.536823 tig0010977:-32279 None:intergenic
AATTTGGAGGGTTTAAGGAA+AGG 0.537593 tig0010977:+30013 Msa1349720:CDS
ATCAGGTATCAAGTACTAGC+AGG 0.538106 tig0010977:+33041 Msa1349720:intron
TCTCAACCAGTGTAGCATAT+GGG 0.543058 tig0010977:+32751 Msa1349720:CDS
TGGTAGTAGTTAGCAACCTC+AGG 0.544386 tig0010977:+32781 Msa1349720:CDS
GGGTTCCTGGTTCGATAGTG+AGG 0.546193 tig0010977:+29944 Msa1349720:CDS
GAATGTGCAAACTTCATGGC+GGG 0.552230 tig0010977:-29653 None:intergenic
GTAAATCCCATATGCTACAC+TGG 0.555578 tig0010977:-32757 None:intergenic
CCAGCACTTATGGCAGGAGG+AGG 0.555670 tig0010977:-31868 None:intergenic
GGAGAATGAAGCCTATGGCT+TGG 0.560688 tig0010977:-29724 None:intergenic
CCATCTCTTATGCAGCGTAA+CGG 0.578736 tig0010977:+32233 Msa1349720:intron
CTGTTGCTGTTAAGGCGGGG+CGG 0.583576 tig0010977:+29923 Msa1349720:CDS
TATATCTTTGAGTAGGTGGG+TGG 0.584566 tig0010977:+33250 Msa1349720:intron
ATAAGTCCAGCACTTATGGC+AGG 0.585862 tig0010977:-31874 None:intergenic
AGAACTGCTAATACTTATTG+GGG 0.588913 tig0010977:+33140 Msa1349720:CDS
AAACCGGAGAATGAAGCCTA+TGG 0.589263 tig0010977:-29729 None:intergenic
AGGAGGTTTAAGAGAAACAG+TGG 0.589294 tig0010977:-31851 None:intergenic
CGGGCTGTGATGGTGTAGCT+TGG 0.591128 tig0010977:-29634 None:intergenic
TTGGAACCTTCGATGAAGCA+TGG 0.591280 tig0010977:-30497 None:intergenic
AACCTCCTCACTATCGAACC+AGG 0.592357 tig0010977:-29949 None:intergenic
TAGCAGGAATTATTGAGCAA+CGG 0.592464 tig0010977:+33057 Msa1349720:CDS
ATCTCTTATGCAGCGTAACG+GGG 0.596886 tig0010977:+32235 Msa1349720:intron
TCTTTCTCAGCTGGAAATGG+AGG 0.597583 tig0010977:+29757 Msa1349720:CDS
TTCCTGGTTCGATAGTGAGG+AGG 0.603087 tig0010977:+29947 Msa1349720:CDS
AAGGGACAGAAATAGAGAAG+AGG 0.605037 tig0010977:+29843 Msa1349720:CDS
AGGCAGCTGTAGAGTTGGAG+CGG 0.612012 tig0010977:+30846 Msa1349720:intron
TGGCATGAAAATGGGTGCAG+AGG 0.615192 tig0010977:-29704 None:intergenic
ACAGCAACAGCCAAATCCGC+CGG 0.617065 tig0010977:-29910 None:intergenic
TGTAGCTTGGTAAAGAAGAA+TGG 0.622312 tig0010977:-29621 None:intergenic
ATATCTTGTGATGCAAGTAA+TGG 0.625822 tig0010977:-33318 None:intergenic
GCTCAACCATGCTTCATCGA+AGG 0.626745 tig0010977:+30491 Msa1349720:CDS
GTGTGTTGAAATGTTGGAGA+AGG 0.628543 tig0010977:-29551 None:intergenic
TGTTGTTGTCATCTTCACCA+AGG 0.629999 tig0010977:+30080 Msa1349720:CDS
TGTAGCATATGGGATTTACA+TGG 0.636490 tig0010977:+32761 Msa1349720:CDS
TGAATGTGAGAATCCCAACT+AGG 0.637170 tig0010977:+33559 Msa1349720:three_prime_UTR
ATGGAGGGTCTAAGTGTAGG+GGG 0.640580 tig0010977:-29462 None:intergenic
CTTGTGATGCAAGTAATGGT+TGG 0.642338 tig0010977:-33314 None:intergenic
TGGCTGTTGCTGTTAAGGCG+GGG 0.645154 tig0010977:+29920 Msa1349720:CDS
ATTTCCAGCTGAGAAAGACA+TGG 0.646963 tig0010977:-29752 None:intergenic
GAGCTCTATAACCAAGCTAG+TGG 0.664604 tig0010977:-30472 None:intergenic
GGAGGTTTAAGAGAAACAGT+GGG 0.664978 tig0010977:-31850 None:intergenic
AGTCCAGCACTTATGGCAGG+AGG 0.668560 tig0010977:-31871 None:intergenic
GTCGATGGAGAGATTTCCGG+CGG 0.669889 tig0010977:+29894 Msa1349720:CDS
AATGGAGGGTCTAAGTGTAG+GGG 0.686119 tig0010977:-29463 None:intergenic
AGAATGTGCAAACTTCATGG+CGG 0.737817 tig0010977:-29654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATTGTTATTAATCATT+AGG + tig0010977:30996-31015 Msa1349720:intron 15.0%
!! AATTTAATAATTAGCATGAA+TGG + tig0010977:31244-31263 Msa1349720:intron 15.0%
!! ATTTAATAATTAGCATGAAT+GGG + tig0010977:31245-31264 Msa1349720:intron 15.0%
!!! TCTATTTGACAATTTAATTT+TGG - tig0010977:31379-31398 None:intergenic 15.0%
!!! ATTTTATACTGAATATGAAA+AGG - tig0010977:31969-31988 None:intergenic 15.0%
!!! AGAAGAATATAATAACTTTT+AGG - tig0010977:33211-33230 None:intergenic 15.0%
!!! TTCTTCTTTCTTTTTTATTT+TGG + tig0010977:33414-33433 Msa1349720:intron 15.0%
!! AAGACTATAAAATAGTAACT+AGG - tig0010977:30166-30185 None:intergenic 20.0%
!! TAAGAATGTTTCTTGTTAAA+TGG + tig0010977:30244-30263 Msa1349720:intron 20.0%
!!! ATAAGTTGTTTTAGAATATG+AGG + tig0010977:30303-30322 Msa1349720:intron 20.0%
!! TAAAATAAAAGTGAGAATGA+GGG + tig0010977:30650-30669 Msa1349720:intron 20.0%
!!! TCACTCTTTTAAGTAAATAA+TGG - tig0010977:30781-30800 None:intergenic 20.0%
!!! TTTGACAATTTAATTTTGGA+AGG - tig0010977:31375-31394 None:intergenic 20.0%
!! AAAGAATAAATGATGAAGAT+TGG - tig0010977:31638-31657 None:intergenic 20.0%
!! AAAAGTTTGAAGAAACTAAA+AGG - tig0010977:32330-32349 None:intergenic 20.0%
!! TAATCTACAATTATAGATGT+TGG - tig0010977:32450-32469 None:intergenic 20.0%
!! CTATAATTGTAGATTATAGA+TGG + tig0010977:32454-32473 Msa1349720:intron 20.0%
!! TTCTTGTGTATATTCTTATT+CGG + tig0010977:32865-32884 Msa1349720:intron 20.0%
!! TTTATATCCTCAAATTATTG+TGG + tig0010977:33005-33024 Msa1349720:intron 20.0%
!!! CATGTAAAATAACAGAATTT+TGG - tig0010977:33490-33509 None:intergenic 20.0%
! TTCAGATGGTTGTTAAAATT+TGG + tig0010977:29997-30016 Msa1349720:CDS 25.0%
! AATACGCTAAATTGTCATAA+TGG - tig0010977:30113-30132 None:intergenic 25.0%
! GATTTATGAATATGTTACTG+TGG + tig0010977:30137-30156 Msa1349720:intron 25.0%
! AACAAATGCAAATTGTATTC+TGG - tig0010977:30338-30357 None:intergenic 25.0%
! TTAAGGCAACAAAAGAAAAT+TGG - tig0010977:30519-30538 None:intergenic 25.0%
!!! TGTTTTCTGCTAATTTGTTA+AGG - tig0010977:30536-30555 None:intergenic 25.0%
! GTAAAATAAAAGTGAGAATG+AGG + tig0010977:30649-30668 Msa1349720:intron 25.0%
! AGAAAATTAGCCATATGTAA+TGG + tig0010977:30806-30825 Msa1349720:intron 25.0%
! AGAAAATTTCACTAAAGAGA+TGG + tig0010977:30874-30893 Msa1349720:CDS 25.0%
! TTATTGTGTTAAATCAAAGC+AGG + tig0010977:31151-31170 Msa1349720:intron 25.0%
!! CAACCATAATTAATCTTTTC+CGG - tig0010977:31563-31582 None:intergenic 25.0%
! AAGTAACAAACTGAATAAGA+TGG - tig0010977:31777-31796 None:intergenic 25.0%
!!! TCAGTTTGTTACTTTATCTT+AGG + tig0010977:31783-31802 Msa1349720:intron 25.0%
! TATACACTTCTACAAAGAAT+AGG + tig0010977:32139-32158 Msa1349720:CDS 25.0%
! AAGGAAATAACTATTTGACT+TGG - tig0010977:32196-32215 None:intergenic 25.0%
!! AGTTATTTCCTTATAAGTGA+AGG + tig0010977:32204-32223 Msa1349720:intron 25.0%
!!! GCTTGCAATATTTTTTATTC+AGG + tig0010977:32647-32666 Msa1349720:intron 25.0%
!!! GCAATATTTTTTATTCAGGT+TGG + tig0010977:32651-32670 Msa1349720:intron 25.0%
!!! TTTTTTATTCAGGTTGGTAT+AGG + tig0010977:32657-32676 Msa1349720:intron 25.0%
!!! ATTATGTAGTAGTTTGTTGA+AGG - tig0010977:32818-32837 None:intergenic 25.0%
! AACAAACTACTACATAATTC+CGG + tig0010977:32820-32839 Msa1349720:intron 25.0%
! AACAAATCCACAATAATTTG+AGG - tig0010977:33015-33034 None:intergenic 25.0%
!!! CAGTTAGTATAAGTTTGTTT+TGG - tig0010977:33103-33122 None:intergenic 25.0%
! CAAAACAAACTTATACTAAC+TGG + tig0010977:33101-33120 Msa1349720:CDS 25.0%
!! TATATTCTTCTTAGTTCTCA+TGG + tig0010977:33220-33239 Msa1349720:intron 25.0%
! TTTGGTATATATCTTTGAGT+AGG + tig0010977:33243-33262 Msa1349720:intron 25.0%
!!! TTTTATTTTGGAAGTGCATA+AGG + tig0010977:33426-33445 Msa1349720:intron 25.0%
!!! TTTATTTTGGAAGTGCATAA+GGG + tig0010977:33427-33446 Msa1349720:intron 25.0%
!! TTTTTCATAAGCCAATAGAT+AGG + tig0010977:33523-33542 Msa1349720:three_prime_UTR 25.0%
TCTTTCTCTCAATACTCAAA+TGG + tig0010977:29519-29538 Msa1349720:exon 30.0%
AGATGGTTGTTAAAATTTGG+AGG + tig0010977:30000-30019 Msa1349720:CDS 30.0%
GATGGTTGTTAAAATTTGGA+GGG + tig0010977:30001-30020 Msa1349720:CDS 30.0%
GTTAAAATTTGGAGGGTTTA+AGG + tig0010977:30008-30027 Msa1349720:CDS 30.0%
!! GTTCTTAACTAAGCTTGTTA+TGG + tig0010977:30053-30072 Msa1349720:CDS 30.0%
! GTCATAATGGAAATAAACCT+TGG - tig0010977:30100-30119 None:intergenic 30.0%
!! TCTTTAAAGTATAGCGTGAA+AGG + tig0010977:30182-30201 Msa1349720:intron 30.0%
! TATAGCGTGAAAGGAATTTT+AGG + tig0010977:30191-30210 Msa1349720:intron 30.0%
TTATGCATCATTACTCTCTT+GGG + tig0010977:30359-30378 Msa1349720:intron 30.0%
ATCATCAGCTTAAAGTTTGT+AGG + tig0010977:30555-30574 Msa1349720:intron 30.0%
AAGTTTGTAGGACTTCTAAT+TGG + tig0010977:30567-30586 Msa1349720:intron 30.0%
AAAACTCATCATGCCAAATA+AGG - tig0010977:30701-30720 None:intergenic 30.0%
AGATTCCAACTTTGTAACTT+TGG - tig0010977:30732-30751 None:intergenic 30.0%
GACAAGATATCCATTACATA+TGG - tig0010977:30819-30838 None:intergenic 30.0%
! GTTTTCTACATGAACATTTG+TGG + tig0010977:31110-31129 Msa1349720:intron 30.0%
AACACAATAAGCATCATTTG+CGG - tig0010977:31141-31160 None:intergenic 30.0%
TTAAATCAAAGCAGGAAACA+AGG + tig0010977:31159-31178 Msa1349720:intron 30.0%
TAAATCAAAGCAGGAAACAA+GGG + tig0010977:31160-31179 Msa1349720:intron 30.0%
ACCTACTGTTCATGTAATTT+AGG + tig0010977:31210-31229 Msa1349720:intron 30.0%
AAATTACTGAGAACTTGAAC+TGG - tig0010977:31276-31295 None:intergenic 30.0%
! AGTTCAAGTTCTCAGTAATT+TGG + tig0010977:31275-31294 Msa1349720:intron 30.0%
ATTATGAATGTCGGCATTTA+AGG - tig0010977:31524-31543 None:intergenic 30.0%
! TTTTGCCACATTATGAATGT+CGG - tig0010977:31533-31552 None:intergenic 30.0%
! ATAATTAATCTTTTCCGGCT+AGG - tig0010977:31558-31577 None:intergenic 30.0%
TAGCCGGAAAAGATTAATTA+TGG + tig0010977:31557-31576 Msa1349720:intron 30.0%
! GTTACTTTATCTTAGGTAAC+AGG + tig0010977:31790-31809 Msa1349720:intron 30.0%
!! TAACAGGTTTTGTACTAGTT+TGG + tig0010977:31818-31837 Msa1349720:CDS 30.0%
CTTATTGCCAAATTCTTCTA+TGG + tig0010977:31892-31911 Msa1349720:CDS 30.0%
!!! TTAACCTGAAAAGCATTTTC+AGG - tig0010977:31922-31941 None:intergenic 30.0%
AACAACTGATCATATACGTT+AGG - tig0010977:32074-32093 None:intergenic 30.0%
! TGAATTTTCATTGTCGATAC+AGG + tig0010977:32096-32115 Msa1349720:intron 30.0%
AATAGAACGATGGAAACTAA+TGG - tig0010977:32411-32430 None:intergenic 30.0%
TTCACATGAAAATAGAACGA+TGG - tig0010977:32421-32440 None:intergenic 30.0%
!! AGTAGTTTGTTGAAGGAAAA+TGG - tig0010977:32811-32830 None:intergenic 30.0%
TTGATTGATTACTATCTGTC+CGG - tig0010977:32842-32861 None:intergenic 30.0%
! TATTCTTATTCGGACTTTTG+TGG + tig0010977:32875-32894 Msa1349720:intron 30.0%
! ATTCTTATTCGGACTTTTGT+GGG + tig0010977:32876-32895 Msa1349720:intron 30.0%
TCAGAACTGCTAATACTTAT+TGG + tig0010977:33138-33157 Msa1349720:CDS 30.0%
CAGAACTGCTAATACTTATT+GGG + tig0010977:33139-33158 Msa1349720:CDS 30.0%
AGAACTGCTAATACTTATTG+GGG + tig0010977:33140-33159 Msa1349720:CDS 30.0%
GTATATATCTTTGAGTAGGT+GGG + tig0010977:33247-33266 Msa1349720:intron 30.0%
ATATCTTGTGATGCAAGTAA+TGG - tig0010977:33321-33340 None:intergenic 30.0%
TATGAGTTCAATTCAAAGCT+TGG + tig0010977:33351-33370 Msa1349720:three_prime_UTR 30.0%
TGGTGACAGTTAAAAATGGA+GGG - tig0010977:29480-29499 None:intergenic 35.0%
! TTGGTGACAGTTAAAAATGG+AGG - tig0010977:29481-29500 None:intergenic 35.0%
!! TGGTTGGTGACAGTTAAAAA+TGG - tig0010977:29484-29503 None:intergenic 35.0%
! AAAGAGAGAGATTAGTTGGT+TGG - tig0010977:29504-29523 None:intergenic 35.0%
AGAGAAAGAGAGAGATTAGT+TGG - tig0010977:29508-29527 None:intergenic 35.0%
TCTCAATACTCAAATGGCTA+TGG + tig0010977:29525-29544 Msa1349720:exon 35.0%
GAACAAGTGTGTTGAAATGT+TGG - tig0010977:29560-29579 None:intergenic 35.0%
ATGGCTGTAGTGATAGAAAT+TGG - tig0010977:29605-29624 None:intergenic 35.0%
TGTAGCTTGGTAAAGAAGAA+TGG - tig0010977:29624-29643 None:intergenic 35.0%
AGAAGAATGTGCAAACTTCA+TGG - tig0010977:29660-29679 None:intergenic 35.0%
AATTTGGAGGGTTTAAGGAA+AGG + tig0010977:30013-30032 Msa1349720:CDS 35.0%
!!! CTCTGCTTTACTTGTTTTTG+AGG - tig0010977:30281-30300 None:intergenic 35.0%
GTTATGCATCATTACTCTCT+TGG + tig0010977:30358-30377 Msa1349720:intron 35.0%
ATCATTACTCTCTTGGGATT+AGG + tig0010977:30365-30384 Msa1349720:intron 35.0%
! AGTTTGCTTCTTCTCAGATA+TGG + tig0010977:30448-30467 Msa1349720:intron 35.0%
AGAAAGATGTTGTTAGCAGA+GGG - tig0010977:30624-30643 None:intergenic 35.0%
TTCCACCAAAGTTACAAAGT+TGG + tig0010977:30724-30743 Msa1349720:intron 35.0%
TTCCAACTTTGTAACTTTGG+TGG - tig0010977:30729-30748 None:intergenic 35.0%
! TGGATATCTTGTCTGTTTTC+AGG + tig0010977:30826-30845 Msa1349720:intron 35.0%
!!! GGATTTTGTTGTTGCTAATG+TGG + tig0010977:30895-30914 Msa1349720:CDS 35.0%
TTTCTTGTGTATGTCTATCG+AGG + tig0010977:30965-30984 Msa1349720:intron 35.0%
TTCTTGTGTATGTCTATCGA+GGG + tig0010977:30966-30985 Msa1349720:intron 35.0%
ATTACATGAACAGTAGGTGA+AGG - tig0010977:31208-31227 None:intergenic 35.0%
GCCTAAATTACATGAACAGT+AGG - tig0010977:31214-31233 None:intergenic 35.0%
AAATGCCGACATTCATAATG+TGG + tig0010977:31525-31544 Msa1349720:intron 35.0%
AAAGCTAAAATGCGACATCA+AGG - tig0010977:31677-31696 None:intergenic 35.0%
AGGACATCCATAGAAGAATT+TGG - tig0010977:31902-31921 None:intergenic 35.0%
! ATGTCCTGAAAATGCTTTTC+AGG + tig0010977:31915-31934 Msa1349720:CDS 35.0%
! ATTTTCATTGTCGATACAGG+TGG + tig0010977:32099-32118 Msa1349720:intron 35.0%
! ACAAAGAATAGGTGCTATAG+TGG + tig0010977:32150-32169 Msa1349720:CDS 35.0%
! AACATCCTAGCATATCCTTT+TGG + tig0010977:32480-32499 Msa1349720:intron 35.0%
ATTCACCAAAAGGATATGCT+AGG - tig0010977:32488-32507 None:intergenic 35.0%
AGAACGTTGAATTCACCAAA+AGG - tig0010977:32498-32517 None:intergenic 35.0%
GCACTCATGTTAGAAATTCA+TGG - tig0010977:32629-32648 None:intergenic 35.0%
TGTAGCATATGGGATTTACA+TGG + tig0010977:32761-32780 Msa1349720:CDS 35.0%
! TTCTTATTCGGACTTTTGTG+GGG + tig0010977:32877-32896 Msa1349720:intron 35.0%
! GTGGATTTGTTTATGTGATC+AGG + tig0010977:33024-33043 Msa1349720:intron 35.0%
TAGCAGGAATTATTGAGCAA+CGG + tig0010977:33057-33076 Msa1349720:CDS 35.0%
! AATTATTGAGCAACGGATTC+TGG + tig0010977:33064-33083 Msa1349720:CDS 35.0%
! TCTTCTTAGTTCTCATGGTT+TGG + tig0010977:33225-33244 Msa1349720:intron 35.0%
GGTATATATCTTTGAGTAGG+TGG + tig0010977:33246-33265 Msa1349720:intron 35.0%
TTGGTTAAGCCTTTATCTTC+TGG - tig0010977:33298-33317 None:intergenic 35.0%
TCATAAGCCAATAGATAGGT+TGG + tig0010977:33527-33546 Msa1349720:three_prime_UTR 35.0%
CATAAGCCAATAGATAGGTT+GGG + tig0010977:33528-33547 Msa1349720:three_prime_UTR 35.0%
AAATGGAGGGTCTAAGTGTA+GGG - tig0010977:29467-29486 None:intergenic 40.0%
AAAATGGAGGGTCTAAGTGT+AGG - tig0010977:29468-29487 None:intergenic 40.0%
! AGAGAGATTAGTTGGTTGGT+TGG - tig0010977:29500-29519 None:intergenic 40.0%
GTGTGTTGAAATGTTGGAGA+AGG - tig0010977:29554-29573 None:intergenic 40.0%
AGAATGTGCAAACTTCATGG+CGG - tig0010977:29657-29676 None:intergenic 40.0%
! CTATGGCTTGGCATGAAAAT+GGG - tig0010977:29715-29734 None:intergenic 40.0%
ATTTCCAGCTGAGAAAGACA+TGG - tig0010977:29755-29774 None:intergenic 40.0%
ATGTCTTTCTCAGCTGGAAA+TGG + tig0010977:29754-29773 Msa1349720:CDS 40.0%
AAGGGACAGAAATAGAGAAG+AGG + tig0010977:29843-29862 Msa1349720:CDS 40.0%
AAATAGAGAAGAGGCAATGC+TGG + tig0010977:29852-29871 Msa1349720:CDS 40.0%
!! AGGAGTCAGTTGTTTTCAGA+TGG + tig0010977:29983-30002 Msa1349720:CDS 40.0%
AGGGTTTAAGGAAAGGTTGT+TGG + tig0010977:30020-30039 Msa1349720:CDS 40.0%
TGTTGTTGTCATCTTCACCA+AGG + tig0010977:30080-30099 Msa1349720:CDS 40.0%
CAGAAAGATGTTGTTAGCAG+AGG - tig0010977:30625-30644 None:intergenic 40.0%
AAATAAGGTAGACTCGTTCG+GGG - tig0010977:30686-30705 None:intergenic 40.0%
CAAATAAGGTAGACTCGTTC+GGG - tig0010977:30687-30706 None:intergenic 40.0%
CCAAATAAGGTAGACTCGTT+CGG - tig0010977:30688-30707 None:intergenic 40.0%
AAGTTGGAATCTCTCTCTAC+AGG + tig0010977:30740-30759 Msa1349720:intron 40.0%
!! CAAGGGCATATGCAATTTTC+AGG + tig0010977:31177-31196 Msa1349720:intron 40.0%
TTTACCTCGATAGTTCAGCA+TGG + tig0010977:31327-31346 Msa1349720:intron 40.0%
AATGTGGCAAAATTCCTAGC+CGG + tig0010977:31541-31560 Msa1349720:intron 40.0%
TGCGACATCAAGGAGATTAT+AGG - tig0010977:31667-31686 None:intergenic 40.0%
! TAGGTAACAGGCATTGTAAC+AGG + tig0010977:31802-31821 Msa1349720:intron 40.0%
GGAGGTTTAAGAGAAACAGT+GGG - tig0010977:31853-31872 None:intergenic 40.0%
AGGAGGTTTAAGAGAAACAG+TGG - tig0010977:31854-31873 None:intergenic 40.0%
GGAGATGACCTTCACTTATA+AGG - tig0010977:32215-32234 None:intergenic 40.0%
! TCTCTGATTTTGCGAACTCT+TGG + tig0010977:32368-32387 Msa1349720:intron 40.0%
CTAATGGAGTTCCATATGCA+AGG - tig0010977:32395-32414 None:intergenic 40.0%
TCTGCAAACAATCGAGAAAG+TGG + tig0010977:32515-32534 Msa1349720:intron 40.0%
ACAATCGAGAAAGTGGACAT+AGG + tig0010977:32522-32541 Msa1349720:intron 40.0%
CAATCGAGAAAGTGGACATA+GGG + tig0010977:32523-32542 Msa1349720:intron 40.0%
TGCCTTGATCAATGCACAAA+AGG + tig0010977:32689-32708 Msa1349720:CDS 40.0%
!! AGCCTTTTGTGCATTGATCA+AGG - tig0010977:32694-32713 None:intergenic 40.0%
ATCTCAACCAGTGTAGCATA+TGG + tig0010977:32750-32769 Msa1349720:CDS 40.0%
TCTCAACCAGTGTAGCATAT+GGG + tig0010977:32751-32770 Msa1349720:CDS 40.0%
GTAAATCCCATATGCTACAC+TGG - tig0010977:32760-32779 None:intergenic 40.0%
GAAGGAAAATGGAATACCTG+AGG - tig0010977:32800-32819 None:intergenic 40.0%
! TCTTATTCGGACTTTTGTGG+GGG + tig0010977:32878-32897 Msa1349720:intron 40.0%
ACGTCTTCAATACGAAGTGT+CGG - tig0010977:32944-32963 None:intergenic 40.0%
ATCAGGTATCAAGTACTAGC+AGG + tig0010977:33041-33060 Msa1349720:intron 40.0%
!!! AGTTTGTTTTGGCGTAGCAA+TGG - tig0010977:33092-33111 None:intergenic 40.0%
TATATCTTTGAGTAGGTGGG+TGG + tig0010977:33250-33269 Msa1349720:intron 40.0%
CTTGTGATGCAAGTAATGGT+TGG - tig0010977:33317-33336 None:intergenic 40.0%
TTGATGCCCAACCTATCTAT+TGG - tig0010977:33537-33556 None:intergenic 40.0%
! AATAGATAGGTTGGGCATCA+AGG + tig0010977:33536-33555 Msa1349720:three_prime_UTR 40.0%
TGAATGTGAGAATCCCAACT+AGG + tig0010977:33559-33578 Msa1349720:three_prime_UTR 40.0%
!! GGGGGAGTTTGTTGATAAGA+TGG - tig0010977:29447-29466 None:intergenic 45.0%
AATGGAGGGTCTAAGTGTAG+GGG - tig0010977:29466-29485 None:intergenic 45.0%
GAATGTGCAAACTTCATGGC+GGG - tig0010977:29656-29675 None:intergenic 45.0%
! CCTATGGCTTGGCATGAAAA+TGG - tig0010977:29716-29735 None:intergenic 45.0%
! CCATTTTCATGCCAAGCCAT+AGG + tig0010977:29713-29732 Msa1349720:CDS 45.0%
AAGCCATAGGCTTCATTCTC+CGG + tig0010977:29726-29745 Msa1349720:CDS 45.0%
AAACCGGAGAATGAAGCCTA+TGG - tig0010977:29732-29751 None:intergenic 45.0%
GCTGAGAAAGACATGGAAAC+CGG - tig0010977:29748-29767 None:intergenic 45.0%
GTTTCCATGTCTTTCTCAGC+TGG + tig0010977:29748-29767 Msa1349720:CDS 45.0%
TCTTTCTCAGCTGGAAATGG+AGG + tig0010977:29757-29776 Msa1349720:CDS 45.0%
!!! AGAAGAGGCAATGCTGGTTT+TGG + tig0010977:29858-29877 Msa1349720:CDS 45.0%
TAGGTCGATGGAGAGATTTC+CGG + tig0010977:29891-29910 Msa1349720:CDS 45.0%
! GGATTTGGCTGTTGCTGTTA+AGG + tig0010977:29915-29934 Msa1349720:CDS 45.0%
! TTTGGCTGTTGCTGTTAAGG+CGG + tig0010977:29918-29937 Msa1349720:CDS 45.0%
!!! AGTGAGGAGGTTTTTCGAGT+TGG + tig0010977:29960-29979 Msa1349720:CDS 45.0%
ACTAACTGCGACACAGAAAC+TGG - tig0010977:30419-30438 None:intergenic 45.0%
TCAGATATGGACCACTAGCT+TGG + tig0010977:30461-30480 Msa1349720:intron 45.0%
GAGCTCTATAACCAAGCTAG+TGG - tig0010977:30475-30494 None:intergenic 45.0%
TTGGAACCTTCGATGAAGCA+TGG - tig0010977:30500-30519 None:intergenic 45.0%
CCGAACGAGTCTACCTTATT+TGG + tig0010977:30685-30704 Msa1349720:intron 45.0%
!! TTTTCAGGCAGCTGTAGAGT+TGG + tig0010977:30841-30860 Msa1349720:intron 45.0%
GTAGCAACTGCTAACAGACT+TGG + tig0010977:31496-31515 Msa1349720:intron 45.0%
TTAAGAGAAACAGTGGGAGC+AGG - tig0010977:31847-31866 None:intergenic 45.0%
ATAAGTCCAGCACTTATGGC+AGG - tig0010977:31877-31896 None:intergenic 45.0%
GGCAATAAGTCCAGCACTTA+TGG - tig0010977:31881-31900 None:intergenic 45.0%
ATTGTCGATACAGGTGGCTT+TGG + tig0010977:32105-32124 Msa1349720:intron 45.0%
! GGTGCTATAGTGGTATGTGT+TGG + tig0010977:32160-32179 Msa1349720:intron 45.0%
CCATCTCTTATGCAGCGTAA+CGG + tig0010977:32233-32252 Msa1349720:intron 45.0%
CATCTCTTATGCAGCGTAAC+GGG + tig0010977:32234-32253 Msa1349720:intron 45.0%
ATCTCTTATGCAGCGTAACG+GGG + tig0010977:32235-32254 Msa1349720:intron 45.0%
AAGCTGTTCGTAGTTGGAAC+CGG + tig0010977:32260-32279 Msa1349720:CDS 45.0%
GAACTCTTGGTCCTTGCATA+TGG + tig0010977:32381-32400 Msa1349720:intron 45.0%
! GCTACACTGGTTGAGATTAC+AGG - tig0010977:32747-32766 None:intergenic 45.0%
TGGTAGTAGTTAGCAACCTC+AGG + tig0010977:32781-32800 Msa1349720:CDS 45.0%
ACGTGTTCAATGTCTGACAC+TGG + tig0010977:32960-32979 Msa1349720:intron 45.0%
!! GTGGGTGGATTTTGCTAGAT+GGG + tig0010977:33265-33284 Msa1349720:CDS 45.0%
! GTGGATTTTGCTAGATGGGT+TGG + tig0010977:33269-33288 Msa1349720:CDS 45.0%
GGTTGGAGTCCAGAAGATAA+AGG + tig0010977:33286-33305 Msa1349720:CDS 45.0%
ATGGAGGGTCTAAGTGTAGG+GGG - tig0010977:29465-29484 None:intergenic 50.0%
GGCAGAGGAATGATTGAGCT+TGG - tig0010977:29686-29705 None:intergenic 50.0%
TGGCATGAAAATGGGTGCAG+AGG - tig0010977:29707-29726 None:intergenic 50.0%
GGAGAATGAAGCCTATGGCT+TGG - tig0010977:29727-29746 None:intergenic 50.0%
TTCTCAGCTGGAAATGGAGG+CGG + tig0010977:29760-29779 Msa1349720:CDS 50.0%
AGGTGGGGAAGAGGAAGAAA+GGG + tig0010977:29825-29844 Msa1349720:CDS 50.0%
! TTGGCTGTTGCTGTTAAGGC+GGG + tig0010977:29919-29938 Msa1349720:CDS 50.0%
! TTCCTGGTTCGATAGTGAGG+AGG + tig0010977:29947-29966 Msa1349720:CDS 50.0%
AACCTCCTCACTATCGAACC+AGG - tig0010977:29952-29971 None:intergenic 50.0%
!!! GAGGAGGTTTTTCGAGTTGG+AGG + tig0010977:29963-29982 Msa1349720:CDS 50.0%
GCTCAACCATGCTTCATCGA+AGG + tig0010977:30491-30510 Msa1349720:CDS 50.0%
GATGCCATGCTGAACTATCG+AGG - tig0010977:31334-31353 None:intergenic 50.0%
CCGTTACGCTGCATAAGAGA+TGG - tig0010977:32236-32255 None:intergenic 50.0%
CGTGTATACCAGTGAAGCAC+CGG - tig0010977:32282-32301 None:intergenic 50.0%
! TATTCGGACTTTTGTGGGGG+TGG + tig0010977:32881-32900 Msa1349720:intron 50.0%
!! GGTGGGTGGATTTTGCTAGA+TGG + tig0010977:33264-33283 Msa1349720:intron 50.0%
CAGAACTCTGCTTGCTTGCT+TGG + tig0010977:33391-33410 Msa1349720:intron 50.0%
TGTGAGAATCCCAACTAGGC+TGG + tig0010977:33563-33582 Msa1349720:three_prime_UTR 50.0%
!! AACTTCATGGCGGGCTGTGA+TGG - tig0010977:29647-29666 None:intergenic 55.0%
GAAAATGGGTGCAGAGGCAG+AGG - tig0010977:29701-29720 None:intergenic 55.0%
TCTCAGCTGGAAATGGAGGC+GGG + tig0010977:29761-29780 Msa1349720:CDS 55.0%
! GAAATGGAGGCGGGTTTCCA+GGG + tig0010977:29770-29789 Msa1349720:CDS 55.0%
GAGGTGGGGAAGAGGAAGAA+AGG + tig0010977:29824-29843 Msa1349720:CDS 55.0%
!!! GGCAATGCTGGTTTTGGCTG+AGG + tig0010977:29864-29883 Msa1349720:CDS 55.0%
!!! ATGCTGGTTTTGGCTGAGGC+TGG + tig0010977:29868-29887 Msa1349720:CDS 55.0%
!!! TGGTTTTGGCTGAGGCTGGT+AGG + tig0010977:29872-29891 Msa1349720:CDS 55.0%
GTCGATGGAGAGATTTCCGG+CGG + tig0010977:29894-29913 Msa1349720:CDS 55.0%
! GGAGAGATTTCCGGCGGATT+TGG + tig0010977:29900-29919 Msa1349720:CDS 55.0%
ACAGCAACAGCCAAATCCGC+CGG - tig0010977:29913-29932 None:intergenic 55.0%
! TGGCTGTTGCTGTTAAGGCG+GGG + tig0010977:29920-29939 Msa1349720:CDS 55.0%
! GGGTTCCTGGTTCGATAGTG+AGG + tig0010977:29944-29963 Msa1349720:CDS 55.0%
AGGCAGCTGTAGAGTTGGAG+CGG + tig0010977:30846-30865 Msa1349720:intron 55.0%
AGTCCAGCACTTATGGCAGG+AGG - tig0010977:31874-31893 None:intergenic 55.0%
!! TCGATACAGGTGGCTTTGGC+AGG + tig0010977:32109-32128 Msa1349720:intron 55.0%
GGGGCAAAGCTGTTCGTAGT+TGG + tig0010977:32254-32273 Msa1349720:CDS 55.0%
AGTTGGAACCGGTGCTTCAC+TGG + tig0010977:32271-32290 Msa1349720:CDS 55.0%
! CGGGCTGTGATGGTGTAGCT+TGG - tig0010977:29637-29656 None:intergenic 60.0%
! GGAAATGGAGGCGGGTTTCC+AGG + tig0010977:29769-29788 Msa1349720:CDS 60.0%
TTTCCAGGGAGTGGAGGTGG+TGG + tig0010977:29784-29803 Msa1349720:CDS 60.0%
! CTGTTGCTGTTAAGGCGGGG+CGG + tig0010977:29923-29942 Msa1349720:CDS 60.0%
! TGTTGCTGTTAAGGCGGGGC+GGG + tig0010977:29924-29943 Msa1349720:CDS 60.0%
CCAGCACTTATGGCAGGAGG+AGG - tig0010977:31871-31890 None:intergenic 60.0%
CCTCCTCCTGCCATAAGTGC+TGG + tig0010977:31868-31887 Msa1349720:CDS 60.0%
GGGTTTCCAGGGAGTGGAGG+TGG + tig0010977:29781-29800 Msa1349720:CDS 65.0%
!! GGAGTGGAGGTGGTGGTGGT+GGG + tig0010977:29791-29810 Msa1349720:CDS 65.0%
!! GAGTGGAGGTGGTGGTGGTG+GGG + tig0010977:29792-29811 Msa1349720:CDS 65.0%
!! GGTGGTGGTGGTGGGGATGA+CGG + tig0010977:29799-29818 Msa1349720:CDS 65.0%
! GTGGGGATGACGGTGGAGGT+GGG + tig0010977:29809-29828 Msa1349720:CDS 65.0%
! TGGGGATGACGGTGGAGGTG+GGG + tig0010977:29810-29829 Msa1349720:CDS 65.0%
TGACGGTGGAGGTGGGGAAG+AGG + tig0010977:29816-29835 Msa1349720:CDS 65.0%
GGCTGAGGCTGGTAGGTCGA+TGG + tig0010977:29879-29898 Msa1349720:CDS 65.0%
GTAGACTCGTTCGGGGCGTG+AGG - tig0010977:30679-30698 None:intergenic 65.0%
! GGAGGCGGGTTTCCAGGGAG+TGG + tig0010977:29775-29794 Msa1349720:CDS 70.0%
! GGCGGGTTTCCAGGGAGTGG+AGG + tig0010977:29778-29797 Msa1349720:CDS 70.0%
CCACCACCACCTCCACTCCC+TGG - tig0010977:29790-29809 None:intergenic 70.0%
! CCAGGGAGTGGAGGTGGTGG+TGG + tig0010977:29787-29806 Msa1349720:CDS 70.0%
!! GGGAGTGGAGGTGGTGGTGG+TGG + tig0010977:29790-29809 Msa1349720:CDS 70.0%
!! GGTGGTGGTGGGGATGACGG+TGG + tig0010977:29802-29821 Msa1349720:CDS 70.0%
!! GGTGGTGGGGATGACGGTGG+AGG + tig0010977:29805-29824 Msa1349720:CDS 70.0%
! GGTGGGGATGACGGTGGAGG+TGG + tig0010977:29808-29827 Msa1349720:CDS 70.0%
! GTTAAGGCGGGGCGGGTTCC+TGG + tig0010977:29931-29950 Msa1349720:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0010977 gene 29434 33590 29434 ID=Msa1349720;Name=Msa1349720
tig0010977 mRNA 29434 33590 29434 ID=Msa1349720-mRNA-1;Parent=Msa1349720;Name=Msa1349720-mRNA-1;_AED=0.12;_eAED=0.12;_QI=104|0.77|0.9|0.9|0.88|0.8|10|211|406
tig0010977 exon 29434 30101 29434 ID=Msa1349720-mRNA-1:exon:7072;Parent=Msa1349720-mRNA-1
tig0010977 exon 30465 30512 30465 ID=Msa1349720-mRNA-1:exon:7073;Parent=Msa1349720-mRNA-1
tig0010977 exon 30848 30916 30848 ID=Msa1349720-mRNA-1:exon:7074;Parent=Msa1349720-mRNA-1
tig0010977 exon 31805 31936 31805 ID=Msa1349720-mRNA-1:exon:7075;Parent=Msa1349720-mRNA-1
tig0010977 exon 32118 32171 32118 ID=Msa1349720-mRNA-1:exon:7076;Parent=Msa1349720-mRNA-1
tig0010977 exon 32248 32292 32248 ID=Msa1349720-mRNA-1:exon:7077;Parent=Msa1349720-mRNA-1
tig0010977 exon 32669 32802 32669 ID=Msa1349720-mRNA-1:exon:7078;Parent=Msa1349720-mRNA-1
tig0010977 exon 33046 33171 33046 ID=Msa1349720-mRNA-1:exon:7079;Parent=Msa1349720-mRNA-1
tig0010977 exon 33265 33381 33265 ID=Msa1349720-mRNA-1:exon:7080;Parent=Msa1349720-mRNA-1
tig0010977 exon 33448 33590 33448 ID=Msa1349720-mRNA-1:exon:7081;Parent=Msa1349720-mRNA-1
tig0010977 five_prime_UTR 29434 29537 29434 ID=Msa1349720-mRNA-1:five_prime_utr;Parent=Msa1349720-mRNA-1
tig0010977 CDS 29538 30101 29538 ID=Msa1349720-mRNA-1:cds;Parent=Msa1349720-mRNA-1
tig0010977 CDS 30465 30512 30465 ID=Msa1349720-mRNA-1:cds;Parent=Msa1349720-mRNA-1
tig0010977 CDS 30848 30916 30848 ID=Msa1349720-mRNA-1:cds;Parent=Msa1349720-mRNA-1
tig0010977 CDS 31805 31936 31805 ID=Msa1349720-mRNA-1:cds;Parent=Msa1349720-mRNA-1
tig0010977 CDS 32118 32171 32118 ID=Msa1349720-mRNA-1:cds;Parent=Msa1349720-mRNA-1
tig0010977 CDS 32248 32292 32248 ID=Msa1349720-mRNA-1:cds;Parent=Msa1349720-mRNA-1
tig0010977 CDS 32669 32802 32669 ID=Msa1349720-mRNA-1:cds;Parent=Msa1349720-mRNA-1
tig0010977 CDS 33046 33171 33046 ID=Msa1349720-mRNA-1:cds;Parent=Msa1349720-mRNA-1
tig0010977 CDS 33265 33313 33265 ID=Msa1349720-mRNA-1:cds;Parent=Msa1349720-mRNA-1
tig0010977 three_prime_UTR 33314 33381 33314 ID=Msa1349720-mRNA-1:three_prime_utr;Parent=Msa1349720-mRNA-1
tig0010977 three_prime_UTR 33448 33590 33448 ID=Msa1349720-mRNA-1:three_prime_utr;Parent=Msa1349720-mRNA-1
Gene Sequence

>Msa1349720

ATGGCTATGGCTTCCTTCTCCAACATTTCAACACACTTGTTCACTCATCACACTCATACTCAAACCAATTTCTATCACTACAGCCATTCTTCTTTACCAAGCTACACCATCACAGCCCGCCATGAAGTTTGCACATTCTTCTCTTCCAAGCTCAATCATTCCTCTGCCTCTGCACCCATTTTCATGCCAAGCCATAGGCTTCATTCTCCGGTTTCCATGTCTTTCTCAGCTGGAAATGGAGGCGGGTTTCCAGGGAGTGGAGGTGGTGGTGGTGGGGATGACGGTGGAGGTGGGGAAGAGGAAGAAAGGGACAGAAATAGAGAAGAGGCAATGCTGGTTTTGGCTGAGGCTGGTAGGTCGATGGAGAGATTTCCGGCGGATTTGGCTGTTGCTGTTAAGGCGGGGCGGGTTCCTGGTTCGATAGTGAGGAGGTTTTTCGAGTTGGAGGAGTCAGTTGTTTTCAGATGGTTGTTAAAATTTGGAGGGTTTAAGGAAAGGTTGTTGGCTGATGATTTGTTCTTAACTAAGCTTGTTATGGAATGTGTTGTTGTCATCTTCACCAAGATATGGACCACTAGCTTGGTTATAGAGCTCAACCATGCTTCATCGAAGGCAGCTGTAGAGTTGGAGCGGCGTAAAGAAAATTTCACTAAAGAGATGGATTTTGTTGTTGCTAATGTGGTAACAGGCATTGTAACAGGTTTTGTACTAGTTTGGTTTCCTGCTCCCACTGTTTCTCTTAAACCTCCTCCTGCCATAAGTGCTGGACTTATTGCCAAATTCTTCTATGGATGTCCTGAAAATGCTTTTCAGGTGGCTTTGGCAGGAACATCATATACACTTCTACAAAGAATAGGTGCTATAGTGCGTAACGGGGCAAAGCTGTTCGTAGTTGGAACCGGTGCTTCACTGGTTGGTATAGGTATAACAAATGCCTTGATCAATGCACAAAAGGCTGTAAATAAAGCATTTACTGTTGAGAATTTACCTGTAATCTCAACCAGTGTAGCATATGGGATTTACATGGTAGTAGTTAGCAACCTCAGGTATCAAGTACTAGCAGGAATTATTGAGCAACGGATTCTGGAACCATTGCTACGCCAAAACAAACTTATACTAACTGGAGCATACTTTATTATCAGAACTGCTAATACTTATTGGGGATCACTACTGTGGGTGGATTTTGCTAGATGGGTTGGAGTCCAGAAGATAAAGGCTTAA

Protein sequence

>Msa1349720

MAMASFSNISTHLFTHHTHTQTNFYHYSHSSLPSYTITARHEVCTFFSSKLNHSSASAPIFMPSHRLHSPVSMSFSAGNGGGFPGSGGGGGGDDGGGGEEEERDRNREEAMLVLAEAGRSMERFPADLAVAVKAGRVPGSIVRRFFELEESVVFRWLLKFGGFKERLLADDLFLTKLVMECVVVIFTKIWTTSLVIELNHASSKAAVELERRKENFTKEMDFVVANVVTGIVTGFVLVWFPAPTVSLKPPPAISAGLIAKFFYGCPENAFQVALAGTSYTLLQRIGAIVRNGAKLFVVGTGASLVGIGITNALINAQKAVNKAFTVENLPVISTSVAYGIYMVVVSNLRYQVLAGIIEQRILEPLLRQNKLILTGAYFIIRTANTYWGSLLWVDFARWVGVQKIKA*