AlfalfaGEDB | Msa0439160

M. sativa cultivar zhongmu-4 / Msa0439160

KEGG: K01613|K02942|K15414
GO: GO:0000184 GO:0000322 GO:0000323 GO:0000324 GO:0000956 GO:0001932 GO:0001934 GO:0002181 GO:0002182 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006414 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0014074 GO:0015031 GO:0015833 GO:0015934 GO:0016070 GO:0016071 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019439 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033036 GO:0033365 GO:0033674 GO:0034248 GO:0034250 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042221 GO:0042325 GO:0042327 GO:0042886 GO:0043021 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0045727 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0046683 GO:0046700 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051591 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070727 GO:0070887 GO:0070972 GO:0071310 GO:0071320 GO:0071407 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0090150 GO:0090304 GO:0098772 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1904400 GO:1904401 GO:1904587 GO:1904588 GO:1990904 GO:2000112
PFAM: PF00428.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0439160	AES77205.1	60.352	227	34	7	1	212	1	186	8.97e-51	173

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0439160	sp\|P52855\|RLA1_MAIZE	67.188	64	20	1	1	63	1	64	3.51e-22	90.1

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0439160	G7KWM5	60.352	227	34	7	1	212	1	186	4.29e-51	173

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0439160	Msa0439170	0.853577	2.179364e-61	-8.615850e-47
Msa0439160	Msa0719080	0.804491	2.106203e-49	-8.615850e-47
Msa0439160	Msa0719090	0.810824	9.512374e-51	-8.615850e-47
Msa0439160	Msa1012280	0.939800	6.903180e-100	-8.615850e-47
Msa0439160	Msa1012290	0.814996	1.159126e-51	-8.615850e-47
Msa0439160	Msa1012400	0.837816	4.157106e-57	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0439160	MtrunA17_Chr3g0127831	93.443	61	3	1	1	60	1	61	2.22e-34	118
Msa0439160	MtrunA17_Chr2g0311301	93.443	61	3	1	1	60	1	61	2.22e-34	118
Msa0439160	MtrunA17_Chr4g0013621	93.333	60	3	1	1	59	1	60	5.13e-33	115
Msa0439160	MtrunA17_Chr8g0345951	64.789	71	23	2	1	70	1	70	5.92e-24	91.7
Msa0439160	MtrunA17_Chr7g0276131	66.102	59	19	1	1	58	1	59	5.77e-17	73.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0439160	AT5G24510.1	55.340	103	40	4	1	98	1	102	3.81e-27	100
Msa0439160	AT5G47700.1	61.667	60	22	1	2	60	3	62	4.52e-20	82.0
Msa0439160	AT5G47700.2	61.667	60	22	1	2	60	3	62	4.52e-20	82.0
Msa0439160	AT1G01100.3	60.000	60	23	1	2	60	3	62	1.06e-19	80.5
Msa0439160	AT1G01100.4	60.000	60	23	1	2	60	3	62	1.79e-19	80.5
Msa0439160	AT1G01100.1	60.000	60	23	1	2	60	3	62	1.79e-19	80.5
Msa0439160	AT1G01100.2	60.000	60	23	1	2	60	3	62	1.79e-19	80.5
Msa0439160	AT4G00810.1	58.333	60	24	1	2	60	3	62	1.31e-18	78.2
Msa0439160	AT4G00810.2	58.333	60	24	1	2	60	3	62	1.31e-18	78.2

Find 39 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCCTTCTATAATCAACTTCT+AGG	0.201812	3_3:+4672689	None:intergenic
ATGTCGTGCAAAGTATATTT+TGG	0.240282	3_3:+4672814	None:intergenic
GATAATAGACTTACGGTGAT+TGG	0.316212	3_3:+4673630	None:intergenic
TCGGATCGTCTATATTGTTT+TGG	0.316764	3_3:-4672874	Msa0439160:CDS
TCTGAGCAAGCTTAGCGAAT+AGG	0.386873	3_3:+4673486	None:intergenic
AAAATGAGTTCCGGCGAGTT+GGG	0.395726	3_3:-4673693	Msa0439160:CDS
ATCTTTGATAGTCGTACTAA+TGG	0.401580	3_3:-4672793	Msa0439160:CDS
ACCTAGAAGTTGATTATAGA+AGG	0.404052	3_3:-4672690	Msa0439160:CDS
CTCAAAGCATACATATGATC+AGG	0.408764	3_3:-4673199	Msa0439160:CDS
GCAAGCTTAGCGAATAGGTT+TGG	0.436712	3_3:+4673491	None:intergenic
TATCTCACAAGCGTCGCAAA+TGG	0.439670	3_3:-4673160	Msa0439160:CDS
CAAAATGAGTTCCGGCGAGT+TGG	0.444981	3_3:-4673694	Msa0439160:exon
ATAATAGACTTACGGTGATT+GGG	0.445449	3_3:+4673631	None:intergenic
GAAGATCGGCACTTTGTTGA+AGG	0.446681	3_3:-4673540	Msa0439160:CDS
TTTGATGACTTTGATTGCAT+TGG	0.451838	3_3:-4672736	Msa0439160:CDS
TTGATGACTTTGATTGCATT+GGG	0.462464	3_3:-4672735	Msa0439160:CDS
CTCAGATGAATATTCTAGTT+CGG	0.464334	3_3:-4672893	Msa0439160:CDS
GAAGGCATTATGTGCGTTAG+TGG	0.466016	3_3:-4672672	None:intergenic
TTGAACTCCGGCTCTGTTGG+TGG	0.474989	3_3:-4673440	Msa0439160:CDS
CTAACGTCACCGTTGAATCC+TGG	0.476021	3_3:-4673514	Msa0439160:CDS
ATCTCACAAGCGTCGCAAAT+GGG	0.482378	3_3:-4673159	Msa0439160:intron
ACAATTCACAAAATGAGTTC+CGG	0.522809	3_3:-4673702	Msa0439160:exon
TCCATCGTCGTGGAGGATCA+AGG	0.532980	3_3:+4673656	None:intergenic
CTTAGCGAATAGGTTTGGCC+AGG	0.533262	3_3:+4673496	None:intergenic
GGTGGCACCACCAACAGAGC+CGG	0.553978	3_3:+4673433	None:intergenic
GACTTTGATTGCATTGGGAA+TGG	0.558045	3_3:-4672730	Msa0439160:CDS
ACCTTGATCCTCCACGACGA+TGG	0.573503	3_3:-4673657	Msa0439160:CDS
TAGGTTTGGCCAGGATTCAA+CGG	0.578272	3_3:+4673505	None:intergenic
AATCAACTTCTAGGTTATGA+CGG	0.580275	3_3:+4672698	None:intergenic
GTAAATGCAACCCAACTCGC+CGG	0.617289	3_3:+4673683	None:intergenic
TCAAAGCATACATATGATCA+GGG	0.618783	3_3:-4673198	Msa0439160:CDS
AGAAGTTGCTAAGCAGAGAG+AGG	0.631730	3_3:-4673226	Msa0439160:CDS
GAAATAACCGAAAAGGAACG+AGG	0.632662	3_3:+4673371	None:intergenic
AGCATGAGCAAGCTTAGCAA+CGG	0.637007	3_3:+4673412	None:intergenic
ATGAGCAAGCTTAGCAACGG+TGG	0.647212	3_3:+4673415	None:intergenic
TTGGGATTCCATCGTCGTGG+AGG	0.650788	3_3:+4673649	None:intergenic
TGATTGGGATTCCATCGTCG+TGG	0.662981	3_3:+4673646	None:intergenic
GCTTGTGAGATATTCAAAGA+CGG	0.700183	3_3:+4673171	None:intergenic
ATCGTCGTGGAGGATCAAGG+TGG	0.743990	3_3:+4673659	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTAAAATAAAAAGTACAAT+TGG	+	chr3_3:4673285-4673304	None:intergenic	10.0%
!!!	ATTAAAATAAAAAGTACAAT+TGG	+	chr3_3:4673285-4673304	None:intergenic	10.0%
!!!	GATCTCTTTTTTTTTTTTTT+AGG	-	chr3_3:4672819-4672838	Msa0439160:CDS	15.0%
!!!	GATCTCTTTTTTTTTTTTTT+AGG	-	chr3_3:4672819-4672838	Msa0439160:CDS	15.0%
!!	GAAAAAAGATAATAGACTTA+CGG	+	chr3_3:4672766-4672785	None:intergenic	20.0%
!!!	CTCTTTTTTTTTTTTTTAGG+CGG	-	chr3_3:4672822-4672841	Msa0439160:CDS	20.0%
!!	GAATAATCAAAACAATAATC+AGG	-	chr3_3:4673127-4673146	Msa0439160:intron	20.0%
!!!	ATTGGTTTATAAAATGAGAA+GGG	+	chr3_3:4673267-4673286	None:intergenic	20.0%
!!!	AATTGGTTTATAAAATGAGA+AGG	+	chr3_3:4673268-4673287	None:intergenic	20.0%
!!	GAAAAAAGATAATAGACTTA+CGG	+	chr3_3:4672766-4672785	None:intergenic	20.0%
!!!	CTCTTTTTTTTTTTTTTAGG+CGG	-	chr3_3:4672822-4672841	Msa0439160:CDS	20.0%
!!	GAATAATCAAAACAATAATC+AGG	-	chr3_3:4673127-4673146	Msa0439160:intron	20.0%
!!!	ATTGGTTTATAAAATGAGAA+GGG	+	chr3_3:4673267-4673286	None:intergenic	20.0%
!!!	AATTGGTTTATAAAATGAGA+AGG	+	chr3_3:4673268-4673287	None:intergenic	20.0%
!	TGAAAAAGAAATAACCGAAA+AGG	+	chr3_3:4673025-4673044	None:intergenic	25.0%
!	TGGAATTATTCAAAACTTGT+TGG	-	chr3_3:4673080-4673099	Msa0439160:intron	25.0%
!!	GGAATTATTCAAAACTTGTT+GGG	-	chr3_3:4673081-4673100	Msa0439160:intron	25.0%
!	TTGGTTTATAAAATGAGAAG+GGG	+	chr3_3:4673266-4673285	None:intergenic	25.0%
!	ATTAAAATATACTCACCCTT+GGG	-	chr3_3:4673395-4673414	Msa0439160:CDS	25.0%
!	TGAAAAAGAAATAACCGAAA+AGG	+	chr3_3:4673025-4673044	None:intergenic	25.0%
!	TGGAATTATTCAAAACTTGT+TGG	-	chr3_3:4673080-4673099	Msa0439160:intron	25.0%
!!	GGAATTATTCAAAACTTGTT+GGG	-	chr3_3:4673081-4673100	Msa0439160:intron	25.0%
!	TTGGTTTATAAAATGAGAAG+GGG	+	chr3_3:4673266-4673285	None:intergenic	25.0%
!	ATTAAAATATACTCACCCTT+GGG	-	chr3_3:4673395-4673414	Msa0439160:CDS	25.0%
	ACAATTCACAAAATGAGTTC+CGG	-	chr3_3:4672684-4672703	Msa0439160:CDS	30.0%
	ATAATAGACTTACGGTGATT+GGG	+	chr3_3:4672758-4672777	None:intergenic	30.0%
	AAAGAGATCAATTAGCGATT+TGG	+	chr3_3:4672808-4672827	None:intergenic	30.0%
	TCAAAGCATACATATGATCA+GGG	-	chr3_3:4673188-4673207	Msa0439160:CDS	30.0%
	TGGTTTATAAAATGAGAAGG+GGG	+	chr3_3:4673265-4673284	None:intergenic	30.0%
	GATTAAAATATACTCACCCT+TGG	-	chr3_3:4673394-4673413	Msa0439160:CDS	30.0%
	TGATCAATTAAGAAACCCAA+GGG	+	chr3_3:4673413-4673432	None:intergenic	30.0%
	TTGATCAATTAAGAAACCCA+AGG	+	chr3_3:4673414-4673433	None:intergenic	30.0%
!	CTCAGATGAATATTCTAGTT+CGG	-	chr3_3:4673493-4673512	Msa0439160:CDS	30.0%
!	ATGTCGTGCAAAGTATATTT+TGG	+	chr3_3:4673575-4673594	None:intergenic	30.0%
!	ATCTTTGATAGTCGTACTAA+TGG	-	chr3_3:4673593-4673612	Msa0439160:intron	30.0%
!	TTTGATGACTTTGATTGCAT+TGG	-	chr3_3:4673650-4673669	Msa0439160:CDS	30.0%
!	TTGATGACTTTGATTGCATT+GGG	-	chr3_3:4673651-4673670	Msa0439160:CDS	30.0%
	AATCAACTTCTAGGTTATGA+CGG	+	chr3_3:4673691-4673710	None:intergenic	30.0%
!	ACCTAGAAGTTGATTATAGA+AGG	-	chr3_3:4673696-4673715	Msa0439160:exon	30.0%
	ACAATTCACAAAATGAGTTC+CGG	-	chr3_3:4672684-4672703	Msa0439160:CDS	30.0%
	ATAATAGACTTACGGTGATT+GGG	+	chr3_3:4672758-4672777	None:intergenic	30.0%
	AAAGAGATCAATTAGCGATT+TGG	+	chr3_3:4672808-4672827	None:intergenic	30.0%
	TCAAAGCATACATATGATCA+GGG	-	chr3_3:4673188-4673207	Msa0439160:CDS	30.0%
	TGGTTTATAAAATGAGAAGG+GGG	+	chr3_3:4673265-4673284	None:intergenic	30.0%
	GATTAAAATATACTCACCCT+TGG	-	chr3_3:4673394-4673413	Msa0439160:CDS	30.0%
	TGATCAATTAAGAAACCCAA+GGG	+	chr3_3:4673413-4673432	None:intergenic	30.0%
	TTGATCAATTAAGAAACCCA+AGG	+	chr3_3:4673414-4673433	None:intergenic	30.0%
!	CTCAGATGAATATTCTAGTT+CGG	-	chr3_3:4673493-4673512	Msa0439160:CDS	30.0%
!	ATGTCGTGCAAAGTATATTT+TGG	+	chr3_3:4673575-4673594	None:intergenic	30.0%
!	ATCTTTGATAGTCGTACTAA+TGG	-	chr3_3:4673593-4673612	Msa0439160:intron	30.0%
!	TTTGATGACTTTGATTGCAT+TGG	-	chr3_3:4673650-4673669	Msa0439160:CDS	30.0%
!	TTGATGACTTTGATTGCATT+GGG	-	chr3_3:4673651-4673670	Msa0439160:CDS	30.0%
	AATCAACTTCTAGGTTATGA+CGG	+	chr3_3:4673691-4673710	None:intergenic	30.0%
!	ACCTAGAAGTTGATTATAGA+AGG	-	chr3_3:4673696-4673715	Msa0439160:exon	30.0%
	GATAATAGACTTACGGTGAT+TGG	+	chr3_3:4672759-4672778	None:intergenic	35.0%
!!!	TTTTTTTAGGCGGAGAAGAT+CGG	-	chr3_3:4672832-4672851	Msa0439160:CDS	35.0%
!	GATGATCTCATTTTGAACTC+CGG	-	chr3_3:4672934-4672953	Msa0439160:CDS	35.0%
	TGATTCTCTTCTGTATTGCT+TGG	-	chr3_3:4673060-4673079	Msa0439160:intron	35.0%
	CTCAAAGCATACATATGATC+AGG	-	chr3_3:4673187-4673206	Msa0439160:CDS	35.0%
	GCTTGTGAGATATTCAAAGA+CGG	+	chr3_3:4673218-4673237	None:intergenic	35.0%
!	TCGGATCGTCTATATTGTTT+TGG	-	chr3_3:4673512-4673531	Msa0439160:CDS	35.0%
	GCCTTCTATAATCAACTTCT+AGG	+	chr3_3:4673700-4673719	None:intergenic	35.0%
	GATAATAGACTTACGGTGAT+TGG	+	chr3_3:4672759-4672778	None:intergenic	35.0%
!!!	TTTTTTTAGGCGGAGAAGAT+CGG	-	chr3_3:4672832-4672851	Msa0439160:CDS	35.0%
!	GATGATCTCATTTTGAACTC+CGG	-	chr3_3:4672934-4672953	Msa0439160:CDS	35.0%
	TGATTCTCTTCTGTATTGCT+TGG	-	chr3_3:4673060-4673079	Msa0439160:intron	35.0%
	CTCAAAGCATACATATGATC+AGG	-	chr3_3:4673187-4673206	Msa0439160:CDS	35.0%
	GCTTGTGAGATATTCAAAGA+CGG	+	chr3_3:4673218-4673237	None:intergenic	35.0%
!	TCGGATCGTCTATATTGTTT+TGG	-	chr3_3:4673512-4673531	Msa0439160:CDS	35.0%
	GCCTTCTATAATCAACTTCT+AGG	+	chr3_3:4673700-4673719	None:intergenic	35.0%
	GAAATAACCGAAAAGGAACG+AGG	+	chr3_3:4673018-4673037	None:intergenic	40.0%
	GACTTTGATTGCATTGGGAA+TGG	-	chr3_3:4673656-4673675	Msa0439160:CDS	40.0%
	GAAATAACCGAAAAGGAACG+AGG	+	chr3_3:4673018-4673037	None:intergenic	40.0%
	GACTTTGATTGCATTGGGAA+TGG	-	chr3_3:4673656-4673675	Msa0439160:CDS	40.0%
	AAAATGAGTTCCGGCGAGTT+GGG	-	chr3_3:4672693-4672712	Msa0439160:CDS	45.0%
	GAAGATCGGCACTTTGTTGA+AGG	-	chr3_3:4672846-4672865	Msa0439160:CDS	45.0%
	TAGGTTTGGCCAGGATTCAA+CGG	+	chr3_3:4672884-4672903	None:intergenic	45.0%
	GCAAGCTTAGCGAATAGGTT+TGG	+	chr3_3:4672898-4672917	None:intergenic	45.0%
	TCTGAGCAAGCTTAGCGAAT+AGG	+	chr3_3:4672903-4672922	None:intergenic	45.0%
!	ATTTTGAACTCCGGCTCTGT+TGG	-	chr3_3:4672943-4672962	Msa0439160:intron	45.0%
	AGCATGAGCAAGCTTAGCAA+CGG	+	chr3_3:4672977-4672996	None:intergenic	45.0%
!	GTCTTCTCCTCGTTCCTTTT+CGG	-	chr3_3:4673008-4673027	Msa0439160:intron	45.0%
	AGAAGTTGCTAAGCAGAGAG+AGG	-	chr3_3:4673160-4673179	Msa0439160:CDS	45.0%
!	TATCTCACAAGCGTCGCAAA+TGG	-	chr3_3:4673226-4673245	Msa0439160:CDS	45.0%
!	ATCTCACAAGCGTCGCAAAT+GGG	-	chr3_3:4673227-4673246	Msa0439160:CDS	45.0%
	AAAATGAGTTCCGGCGAGTT+GGG	-	chr3_3:4672693-4672712	Msa0439160:CDS	45.0%
	GAAGATCGGCACTTTGTTGA+AGG	-	chr3_3:4672846-4672865	Msa0439160:CDS	45.0%
	TAGGTTTGGCCAGGATTCAA+CGG	+	chr3_3:4672884-4672903	None:intergenic	45.0%
	GCAAGCTTAGCGAATAGGTT+TGG	+	chr3_3:4672898-4672917	None:intergenic	45.0%
	TCTGAGCAAGCTTAGCGAAT+AGG	+	chr3_3:4672903-4672922	None:intergenic	45.0%
!	ATTTTGAACTCCGGCTCTGT+TGG	-	chr3_3:4672943-4672962	Msa0439160:intron	45.0%
	AGCATGAGCAAGCTTAGCAA+CGG	+	chr3_3:4672977-4672996	None:intergenic	45.0%
!	GTCTTCTCCTCGTTCCTTTT+CGG	-	chr3_3:4673008-4673027	Msa0439160:intron	45.0%
	AGAAGTTGCTAAGCAGAGAG+AGG	-	chr3_3:4673160-4673179	Msa0439160:CDS	45.0%
!	TATCTCACAAGCGTCGCAAA+TGG	-	chr3_3:4673226-4673245	Msa0439160:CDS	45.0%
!	ATCTCACAAGCGTCGCAAAT+GGG	-	chr3_3:4673227-4673246	Msa0439160:CDS	45.0%
	CAAAATGAGTTCCGGCGAGT+TGG	-	chr3_3:4672692-4672711	Msa0439160:CDS	50.0%
	GTAAATGCAACCCAACTCGC+CGG	+	chr3_3:4672706-4672725	None:intergenic	50.0%
	TGATTGGGATTCCATCGTCG+TGG	+	chr3_3:4672743-4672762	None:intergenic	50.0%
	CTAACGTCACCGTTGAATCC+TGG	-	chr3_3:4672872-4672891	Msa0439160:CDS	50.0%
	CTTAGCGAATAGGTTTGGCC+AGG	+	chr3_3:4672893-4672912	None:intergenic	50.0%
	ATGAGCAAGCTTAGCAACGG+TGG	+	chr3_3:4672974-4672993	None:intergenic	50.0%
!!	TTTTGGCTGCGAGACAAGTG+AGG	-	chr3_3:4673529-4673548	Msa0439160:CDS	50.0%
	CAAAATGAGTTCCGGCGAGT+TGG	-	chr3_3:4672692-4672711	Msa0439160:CDS	50.0%
	GTAAATGCAACCCAACTCGC+CGG	+	chr3_3:4672706-4672725	None:intergenic	50.0%
	TGATTGGGATTCCATCGTCG+TGG	+	chr3_3:4672743-4672762	None:intergenic	50.0%
	CTAACGTCACCGTTGAATCC+TGG	-	chr3_3:4672872-4672891	Msa0439160:CDS	50.0%
	CTTAGCGAATAGGTTTGGCC+AGG	+	chr3_3:4672893-4672912	None:intergenic	50.0%
	ATGAGCAAGCTTAGCAACGG+TGG	+	chr3_3:4672974-4672993	None:intergenic	50.0%
!!	TTTTGGCTGCGAGACAAGTG+AGG	-	chr3_3:4673529-4673548	Msa0439160:CDS	50.0%
	ATCGTCGTGGAGGATCAAGG+TGG	+	chr3_3:4672730-4672749	None:intergenic	55.0%
	ACCTTGATCCTCCACGACGA+TGG	-	chr3_3:4672729-4672748	Msa0439160:CDS	55.0%
	TCCATCGTCGTGGAGGATCA+AGG	+	chr3_3:4672733-4672752	None:intergenic	55.0%
	TTGGGATTCCATCGTCGTGG+AGG	+	chr3_3:4672740-4672759	None:intergenic	55.0%
	TTGAACTCCGGCTCTGTTGG+TGG	-	chr3_3:4672946-4672965	Msa0439160:intron	55.0%
	ATCGTCGTGGAGGATCAAGG+TGG	+	chr3_3:4672730-4672749	None:intergenic	55.0%
	ACCTTGATCCTCCACGACGA+TGG	-	chr3_3:4672729-4672748	Msa0439160:CDS	55.0%
	TCCATCGTCGTGGAGGATCA+AGG	+	chr3_3:4672733-4672752	None:intergenic	55.0%
	TTGGGATTCCATCGTCGTGG+AGG	+	chr3_3:4672740-4672759	None:intergenic	55.0%
	TTGAACTCCGGCTCTGTTGG+TGG	-	chr3_3:4672946-4672965	Msa0439160:intron	55.0%
	GGTGGCACCACCAACAGAGC+CGG	+	chr3_3:4672956-4672975	None:intergenic	65.0%
	GGTGGCACCACCAACAGAGC+CGG	+	chr3_3:4672956-4672975	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	4672675	4673733	4672675	ID=Msa0439160;Name=Msa0439160
chr3_3	mRNA	4672675	4673733	4672675	ID=Msa0439160-mRNA-1;Parent=Msa0439160;Name=Msa0439160-mRNA-1;_AED=0.27;_eAED=0.29;_QI=21\|0.33\|0.25\|0.75\|1\|1\|4\|0\|213
chr3_3	exon	4672675	4672958	4672675	ID=Msa0439160-mRNA-1:exon:1027;Parent=Msa0439160-mRNA-1
chr3_3	exon	4673160	4673259	4673160	ID=Msa0439160-mRNA-1:exon:1026;Parent=Msa0439160-mRNA-1
chr3_3	exon	4673379	4673567	4673379	ID=Msa0439160-mRNA-1:exon:1025;Parent=Msa0439160-mRNA-1
chr3_3	exon	4673644	4673733	4673644	ID=Msa0439160-mRNA-1:exon:1024;Parent=Msa0439160-mRNA-1
chr3_3	five_prime_UTR	4673713	4673733	4673713	ID=Msa0439160-mRNA-1:five_prime_utr;Parent=Msa0439160-mRNA-1
chr3_3	CDS	4673644	4673712	4673644	ID=Msa0439160-mRNA-1:cds;Parent=Msa0439160-mRNA-1
chr3_3	CDS	4673379	4673567	4673379	ID=Msa0439160-mRNA-1:cds;Parent=Msa0439160-mRNA-1
chr3_3	CDS	4673160	4673259	4673160	ID=Msa0439160-mRNA-1:cds;Parent=Msa0439160-mRNA-1
chr3_3	CDS	4672675	4672958	4672675	ID=Msa0439160-mRNA-1:cds;Parent=Msa0439160-mRNA-1

Gene Sequence

>Msa0439160

ATGAGTTCCGGCGAGTTGGGTTGCATTTACGCCACCTTGATCCTCCACGACGATGGAATCCCAATCACCGCGGAGAAGATCGGCACTTTGTTGAAGGCTGCTAACGTCACCGTTGAATCCTGGCCAAACCTATTCGCTAAGCTTGCTCAGAGCAAGAACATTGATGATCTCATTTTGAACTCCGGCTCTGTTGGTGGTGCCACCGTTGCTAAGCTTGCTCATGCTGATTCTTCTTCGTCTTCTCCTCGTTCCTTTTCGGAACACAAAAGAGAAGTTGCTAAGCAGAGAGAGGAGAGCTCAAAGCATACATATGATCAGGGATATCCGTCTTTGAATATCTCACAAGCGTCGCAAATGGATCTCGAAGACAAAAAAGAAGTTGCTTATTCTGAAGTCGAGAGCTCAGATGAATATTCTAGTTCGGATCGTCTATATTGTTTTGGCTGCGAGACAAGTGAGGAAGACAGTGATATTGACTATCCAAAATATACTTTGCACGACATCTTTGATAGTCGTACTAATGGAGCTTTTGCTAGTGATGTGAGTGATATGAGTGACTTTGATGACTTTGATTGCATTGGGAATGGCAGAAAATTCCGTCATAACCTAGAAGTTGATTATAGAAGGCATTATGTGCGTTAG

Protein sequence

>Msa0439160

MSSGELGCIYATLILHDDGIPITAEKIGTLLKAANVTVESWPNLFAKLAQSKNIDDLILNSGSVGGATVAKLAHADSSSSSPRSFSEHKREVAKQREESSKHTYDQGYPSLNISQASQMDLEDKKEVAYSEVESSDEYSSSDRLYCFGCETSEEDSDIDYPKYTLHDIFDSRTNGAFASDVSDMSDFDDFDCIGNGRKFRHNLEVDYRRHYVR*