Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440120 | XP_039684197.1 | 85.463 | 227 | 32 | 1 | 1 | 227 | 1 | 226 | 4.67e-139 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440120 | A0A072U033 | 85.520 | 221 | 31 | 1 | 7 | 227 | 8 | 227 | 3.43e-135 | 391 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056030 | Msa0440120 | 0.804995 | 1.652511e-49 | -8.615850e-47 |
| Msa0440120 | Msa0484780 | 0.808981 | 2.371345e-50 | -8.615850e-47 |
| Msa0440120 | Msa1388860 | 0.804205 | 2.415602e-49 | -8.615850e-47 |
| Msa0299730 | Msa0440120 | 0.803663 | 3.130805e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440120 | MtrunA17_Chr7g0233141 | 85.520 | 221 | 31 | 1 | 7 | 227 | 8 | 227 | 6.61e-139 | 391 |
| Msa0440120 | MtrunA17_Chr5g0445061 | 87.209 | 172 | 22 | 0 | 1 | 172 | 4 | 175 | 1.07e-109 | 315 |
| Msa0440120 | MtrunA17_Chr7g0249411 | 48.864 | 88 | 44 | 1 | 1 | 88 | 1 | 87 | 3.34e-24 | 102 |
| Msa0440120 | MtrunA17_Chr1g0163821 | 51.765 | 85 | 37 | 2 | 2 | 85 | 5 | 86 | 1.27e-22 | 89.4 |
| Msa0440120 | MtrunA17_Chr8g0392231 | 47.561 | 82 | 43 | 0 | 1 | 82 | 1 | 82 | 5.14e-22 | 95.5 |
| Msa0440120 | MtrunA17_Chr4g0032841 | 36.842 | 95 | 41 | 1 | 1 | 95 | 1 | 76 | 5.16e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTCCTCACTCTCTTTC+TGG | 0.024047 | 3_3:+6677199 | Msa0440120:CDS |
| CCTTTCTCCACGGTCATTTC+AGG | 0.155717 | 3_3:+6677105 | Msa0440120:CDS |
| CCCTATCATCATTGCCTTGC+CGG | 0.232397 | 3_3:+6677080 | Msa0440120:CDS |
| GGCAAGACGTCTCGATATTC+TGG | 0.260093 | 3_3:-6676730 | Msa0440110:intron |
| GTGCTCATCAATGGTGGTTT+TGG | 0.290785 | 3_3:+6676641 | Msa0440120:CDS |
| TGCTTCCTCACTCTCTTTCT+GGG | 0.299616 | 3_3:+6677200 | Msa0440120:CDS |
| TACACCAGAGACAGAGAAAT+TGG | 0.318602 | 3_3:+6676591 | Msa0440120:CDS |
| TGGTTTAAAACGCCACAAAA+AGG | 0.343158 | 3_3:-6676710 | Msa0440110:intron |
| AGAGAAATTTCAGATATAGA+AGG | 0.361536 | 3_3:+6676958 | Msa0440120:CDS |
| TCGAAGTCGTTGACGGTTCA+AGG | 0.374458 | 3_3:+6676787 | Msa0440120:CDS |
| ATTGGCCACCCTCCTCAAAA+TGG | 0.378458 | 3_3:-6677152 | Msa0440110:intron |
| TGTCACTCTACTTCAAGTTA+TGG | 0.389092 | 3_3:+6677289 | Msa0440120:CDS |
| TCTGCCAATTTCTCTGTCTC+TGG | 0.390614 | 3_3:-6676595 | Msa0440110:intron |
| CCCGGCAAGGCAATGATGAT+AGG | 0.414538 | 3_3:-6677081 | Msa0440110:intron |
| GTCACTCTACTTCAAGTTAT+GGG | 0.417255 | 3_3:+6677290 | Msa0440120:CDS |
| AAGGCGAAGAAGACGCATAT+TGG | 0.417983 | 3_3:+6676530 | Msa0440120:CDS |
| TCCTTCAAACACCCTTTCAA+TGG | 0.429714 | 3_3:-6676931 | Msa0440110:intron |
| CGAAGAAGAAGTCAAGGTTC+AGG | 0.440816 | 3_3:+6677008 | Msa0440120:CDS |
| TCATTTCAGGATTCTGCTGT+TGG | 0.441223 | 3_3:+6677118 | Msa0440120:CDS |
| TCCTCTTCTTCATCATGTAT+AGG | 0.453208 | 3_3:-6676751 | Msa0440110:intron |
| CCTATCATCATTGCCTTGCC+GGG | 0.458752 | 3_3:+6677081 | Msa0440120:CDS |
| GGGTGGCCAATGTCGTTTGA+TGG | 0.465279 | 3_3:+6677164 | Msa0440120:CDS |
| TGATTGAGTTGGAAGAAGAC+AGG | 0.468276 | 3_3:+6676854 | Msa0440120:CDS |
| TATTCAATCGAAGTCGTTGA+CGG | 0.473681 | 3_3:+6676780 | Msa0440120:CDS |
| ATGGAGTTTCGAGTGTTTGA+AGG | 0.479218 | 3_3:+6676511 | Msa0440120:CDS |
| TACTTCAAGTTATGGGATCC+TGG | 0.483010 | 3_3:+6677297 | Msa0440120:CDS |
| CCTGAAATGACCGTGGAGAA+AGG | 0.484928 | 3_3:-6677105 | Msa0440110:intron |
| ACCATTGAAAGGGTGTTTGA+AGG | 0.489135 | 3_3:+6676930 | Msa0440120:CDS |
| CTTGCCGGGTCCTTTCTCCA+CGG | 0.505256 | 3_3:+6677095 | Msa0440120:CDS |
| TGAAGTAGAGTGACAGATCA+AGG | 0.511014 | 3_3:-6677281 | Msa0440110:intron |
| CAAAACAGAGTGTATGATCC+AGG | 0.512776 | 3_3:+6677237 | Msa0440120:CDS |
| TGCGTGGATGTGCTCATCAA+TGG | 0.517476 | 3_3:+6676632 | Msa0440120:CDS |
| CCCTTTCAATGGTTCTGCAA+TGG | 0.522236 | 3_3:-6676920 | Msa0440110:intron |
| ACCCTCCTCAAAATGGTTGT+CGG | 0.530121 | 3_3:-6677145 | Msa0440110:intron |
| GGATAACATAAGTGTCCTCC+AGG | 0.530824 | 3_3:-6677315 | Msa0440110:intron |
| GCCTATACATGATGAAGAAG+AGG | 0.532990 | 3_3:+6676750 | Msa0440120:CDS |
| AATGTCGTTTGATGGAGAAA+AGG | 0.534737 | 3_3:+6677172 | Msa0440120:CDS |
| CCGGCAAGGCAATGATGATA+GGG | 0.535016 | 3_3:-6677080 | Msa0440110:intron |
| TCAGGATGCAGAAAAGATGA+AGG | 0.538842 | 3_3:+6677026 | Msa0440120:CDS |
| AAAATTCAGTCAGAAAATGA+AGG | 0.539865 | 3_3:+6676880 | Msa0440120:CDS |
| AGATATAGAAGGGAAAATGA+TGG | 0.544309 | 3_3:+6676969 | Msa0440120:CDS |
| GAGAAATTTCAGATATAGAA+GGG | 0.544789 | 3_3:+6676959 | Msa0440120:CDS |
| TTATGTTATCCTTCACCTTG+AGG | 0.548558 | 3_3:+6677327 | Msa0440120:CDS |
| TCCATTGCAGAACCATTGAA+AGG | 0.557293 | 3_3:+6676919 | Msa0440120:CDS |
| TGATGATAGGGCGAACACTA+AGG | 0.563068 | 3_3:-6677068 | Msa0440110:intron |
| GGAGCATGAAAACATATGCC+TGG | 0.570100 | 3_3:-6677255 | Msa0440110:intron |
| CCATTGCAGAACCATTGAAA+GGG | 0.570558 | 3_3:+6676920 | Msa0440120:CDS |
| ATGACCGTGGAGAAAGGACC+CGG | 0.580726 | 3_3:-6677099 | Msa0440110:intron |
| GCCGTCATCCACATGCAAGT+TGG | 0.586975 | 3_3:+6676671 | Msa0440120:CDS |
| GATTGAGTTGGAAGAAGACA+GGG | 0.590077 | 3_3:+6676855 | Msa0440120:CDS |
| GCGAAGAAGACGCATATTGG+TGG | 0.590676 | 3_3:+6676533 | Msa0440120:CDS |
| TCACCTTGTCCTCAAGGTGA+AGG | 0.591944 | 3_3:-6677336 | Msa0440110:intron |
| TTTGGCCCAGAAAGAGAGTG+AGG | 0.592737 | 3_3:-6677205 | Msa0440110:intron |
| GAAGTTGTGACTGCGTTGCG+TGG | 0.598345 | 3_3:+6676616 | Msa0440120:CDS |
| CGTGGAGAAAGGACCCGGCA+AGG | 0.598644 | 3_3:-6677094 | Msa0440110:intron |
| GCCAACTTGCATGTGGATGA+CGG | 0.610574 | 3_3:-6676672 | Msa0440110:intron |
| CAGGATGCAGAAAAGATGAA+GGG | 0.616929 | 3_3:+6677027 | Msa0440120:CDS |
| GTTCATTTGATGTTCAACAA+GGG | 0.619342 | 3_3:+6676809 | Msa0440120:CDS |
| GGTTCATTTGATGTTCAACA+AGG | 0.623677 | 3_3:+6676808 | Msa0440120:CDS |
| AAAGAGAGTGAGGAAGCAGT+AGG | 0.627649 | 3_3:-6677195 | Msa0440110:intron |
| AGATGTCGAAGAAGAAGTCA+AGG | 0.631739 | 3_3:+6677002 | Msa0440120:CDS |
| AATGATTGCCAACTTGCATG+TGG | 0.640733 | 3_3:-6676679 | Msa0440110:intron |
| TTCAACAAGGGACTAACCAA+CGG | 0.644233 | 3_3:+6676821 | Msa0440120:CDS |
| AGGATGCAGAAAAGATGAAG+GGG | 0.649303 | 3_3:+6677028 | Msa0440120:CDS |
| TAGAGTGACAGATCAAGGTG+TGG | 0.659701 | 3_3:-6677276 | Msa0440110:intron |
| GTGGATGTGCTCATCAATGG+TGG | 0.665459 | 3_3:+6676635 | Msa0440120:CDS |
| GCAGAATCCTGAAATGACCG+TGG | 0.690411 | 3_3:-6677112 | Msa0440110:intron |
| GGATGCAGAAAAGATGAAGG+GGG | 0.706575 | 3_3:+6677029 | Msa0440120:CDS |
| GAACACTAAGGTTCACAGCG+AGG | 0.713156 | 3_3:-6677056 | Msa0440110:intron |
| TTCAAGTTATGGGATCCTGG+AGG | 0.737576 | 3_3:+6677300 | Msa0440120:CDS |
| AACTTGCATGTGGATGACGG+CGG | 0.753658 | 3_3:-6676669 | Msa0440110:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAATTCAGTCAGAAAATGA+AGG | + | chr3_3:6676880-6676899 | Msa0440120:CDS | 25.0% |
| ! | AATGAAGGAAAAAGAAATGA+AGG | + | chr3_3:6676895-6676914 | Msa0440120:CDS | 25.0% |
| ! | ATGAAGGAAAAAGAAATGAA+GGG | + | chr3_3:6676896-6676915 | Msa0440120:CDS | 25.0% |
| ! | AGAGAAATTTCAGATATAGA+AGG | + | chr3_3:6676958-6676977 | Msa0440120:CDS | 25.0% |
| ! | GAGAAATTTCAGATATAGAA+GGG | + | chr3_3:6676959-6676978 | Msa0440120:CDS | 25.0% |
| !!! | TCTGTTTTGAGTAGTATTTT+TGG | - | chr3_3:6677226-6677245 | Msa0440110:intron | 25.0% |
| ! | AAAATTCAGTCAGAAAATGA+AGG | + | chr3_3:6676880-6676899 | Msa0440120:CDS | 25.0% |
| ! | AATGAAGGAAAAAGAAATGA+AGG | + | chr3_3:6676895-6676914 | Msa0440120:CDS | 25.0% |
| ! | ATGAAGGAAAAAGAAATGAA+GGG | + | chr3_3:6676896-6676915 | Msa0440120:CDS | 25.0% |
| ! | AGAGAAATTTCAGATATAGA+AGG | + | chr3_3:6676958-6676977 | Msa0440120:CDS | 25.0% |
| ! | GAGAAATTTCAGATATAGAA+GGG | + | chr3_3:6676959-6676978 | Msa0440120:CDS | 25.0% |
| !!! | TCTGTTTTGAGTAGTATTTT+TGG | - | chr3_3:6677226-6677245 | Msa0440110:intron | 25.0% |
| GTTCATTTGATGTTCAACAA+GGG | + | chr3_3:6676809-6676828 | Msa0440120:CDS | 30.0% | |
| AGATATAGAAGGGAAAATGA+TGG | + | chr3_3:6676969-6676988 | Msa0440120:CDS | 30.0% | |
| GTTCATTTGATGTTCAACAA+GGG | + | chr3_3:6676809-6676828 | Msa0440120:CDS | 30.0% | |
| AGATATAGAAGGGAAAATGA+TGG | + | chr3_3:6676969-6676988 | Msa0440120:CDS | 30.0% | |
| ! | TGGTTTAAAACGCCACAAAA+AGG | - | chr3_3:6676713-6676732 | Msa0440110:intron | 35.0% |
| TCCTCTTCTTCATCATGTAT+AGG | - | chr3_3:6676754-6676773 | Msa0440110:intron | 35.0% | |
| TATTCAATCGAAGTCGTTGA+CGG | + | chr3_3:6676780-6676799 | Msa0440120:CDS | 35.0% | |
| GGTTCATTTGATGTTCAACA+AGG | + | chr3_3:6676808-6676827 | Msa0440120:CDS | 35.0% | |
| GAAAAACGTTCTGATTGAGT+TGG | + | chr3_3:6676843-6676862 | Msa0440120:CDS | 35.0% | |
| ! | TTTTCTCCATCAAACGACAT+TGG | - | chr3_3:6677173-6677192 | Msa0440110:intron | 35.0% |
| ! | AATGTCGTTTGATGGAGAAA+AGG | + | chr3_3:6677172-6677191 | Msa0440120:CDS | 35.0% |
| ! | TGTCACTCTACTTCAAGTTA+TGG | + | chr3_3:6677289-6677308 | Msa0440120:CDS | 35.0% |
| ! | GTCACTCTACTTCAAGTTAT+GGG | + | chr3_3:6677290-6677309 | Msa0440120:CDS | 35.0% |
| ! | TGGTTTAAAACGCCACAAAA+AGG | - | chr3_3:6676713-6676732 | Msa0440110:intron | 35.0% |
| TCCTCTTCTTCATCATGTAT+AGG | - | chr3_3:6676754-6676773 | Msa0440110:intron | 35.0% | |
| TATTCAATCGAAGTCGTTGA+CGG | + | chr3_3:6676780-6676799 | Msa0440120:CDS | 35.0% | |
| GGTTCATTTGATGTTCAACA+AGG | + | chr3_3:6676808-6676827 | Msa0440120:CDS | 35.0% | |
| GAAAAACGTTCTGATTGAGT+TGG | + | chr3_3:6676843-6676862 | Msa0440120:CDS | 35.0% | |
| ! | TTTTCTCCATCAAACGACAT+TGG | - | chr3_3:6677173-6677192 | Msa0440110:intron | 35.0% |
| ! | AATGTCGTTTGATGGAGAAA+AGG | + | chr3_3:6677172-6677191 | Msa0440120:CDS | 35.0% |
| ! | TGTCACTCTACTTCAAGTTA+TGG | + | chr3_3:6677289-6677308 | Msa0440120:CDS | 35.0% |
| ! | GTCACTCTACTTCAAGTTAT+GGG | + | chr3_3:6677290-6677309 | Msa0440120:CDS | 35.0% |
| ! | ATGGAGTTTCGAGTGTTTGA+AGG | + | chr3_3:6676511-6676530 | Msa0440120:CDS | 40.0% |
| TACACCAGAGACAGAGAAAT+TGG | + | chr3_3:6676591-6676610 | Msa0440120:CDS | 40.0% | |
| AATGATTGCCAACTTGCATG+TGG | - | chr3_3:6676682-6676701 | Msa0440110:intron | 40.0% | |
| GCCTATACATGATGAAGAAG+AGG | + | chr3_3:6676750-6676769 | Msa0440120:CDS | 40.0% | |
| TTCAACAAGGGACTAACCAA+CGG | + | chr3_3:6676821-6676840 | Msa0440120:CDS | 40.0% | |
| ! | CAATCAGAACGTTTTTCCGT+TGG | - | chr3_3:6676840-6676859 | Msa0440110:intron | 40.0% |
| !! | TGATTGAGTTGGAAGAAGAC+AGG | + | chr3_3:6676854-6676873 | Msa0440120:CDS | 40.0% |
| !! | GATTGAGTTGGAAGAAGACA+GGG | + | chr3_3:6676855-6676874 | Msa0440120:CDS | 40.0% |
| TCCATTGCAGAACCATTGAA+AGG | + | chr3_3:6676919-6676938 | Msa0440120:CDS | 40.0% | |
| CCATTGCAGAACCATTGAAA+GGG | + | chr3_3:6676920-6676939 | Msa0440120:CDS | 40.0% | |
| !! | ACCATTGAAAGGGTGTTTGA+AGG | + | chr3_3:6676930-6676949 | Msa0440120:CDS | 40.0% |
| TCCTTCAAACACCCTTTCAA+TGG | - | chr3_3:6676934-6676953 | Msa0440110:intron | 40.0% | |
| AGATGTCGAAGAAGAAGTCA+AGG | + | chr3_3:6677002-6677021 | Msa0440120:CDS | 40.0% | |
| TCAGGATGCAGAAAAGATGA+AGG | + | chr3_3:6677026-6677045 | Msa0440120:CDS | 40.0% | |
| CAGGATGCAGAAAAGATGAA+GGG | + | chr3_3:6677027-6677046 | Msa0440120:CDS | 40.0% | |
| AGGATGCAGAAAAGATGAAG+GGG | + | chr3_3:6677028-6677047 | Msa0440120:CDS | 40.0% | |
| TCATTTCAGGATTCTGCTGT+TGG | + | chr3_3:6677118-6677137 | Msa0440120:CDS | 40.0% | |
| ! | GAATTCCGACAACCATTTTG+AGG | + | chr3_3:6677140-6677159 | Msa0440120:CDS | 40.0% |
| CAAAACAGAGTGTATGATCC+AGG | + | chr3_3:6677237-6677256 | Msa0440120:CDS | 40.0% | |
| TGAAGTAGAGTGACAGATCA+AGG | - | chr3_3:6677284-6677303 | Msa0440110:intron | 40.0% | |
| ! | TACTTCAAGTTATGGGATCC+TGG | + | chr3_3:6677297-6677316 | Msa0440120:CDS | 40.0% |
| ! | ATGGAGTTTCGAGTGTTTGA+AGG | + | chr3_3:6676511-6676530 | Msa0440120:CDS | 40.0% |
| TACACCAGAGACAGAGAAAT+TGG | + | chr3_3:6676591-6676610 | Msa0440120:CDS | 40.0% | |
| AATGATTGCCAACTTGCATG+TGG | - | chr3_3:6676682-6676701 | Msa0440110:intron | 40.0% | |
| GCCTATACATGATGAAGAAG+AGG | + | chr3_3:6676750-6676769 | Msa0440120:CDS | 40.0% | |
| TTCAACAAGGGACTAACCAA+CGG | + | chr3_3:6676821-6676840 | Msa0440120:CDS | 40.0% | |
| ! | CAATCAGAACGTTTTTCCGT+TGG | - | chr3_3:6676840-6676859 | Msa0440110:intron | 40.0% |
| !! | TGATTGAGTTGGAAGAAGAC+AGG | + | chr3_3:6676854-6676873 | Msa0440120:CDS | 40.0% |
| !! | GATTGAGTTGGAAGAAGACA+GGG | + | chr3_3:6676855-6676874 | Msa0440120:CDS | 40.0% |
| TCCATTGCAGAACCATTGAA+AGG | + | chr3_3:6676919-6676938 | Msa0440120:CDS | 40.0% | |
| CCATTGCAGAACCATTGAAA+GGG | + | chr3_3:6676920-6676939 | Msa0440120:CDS | 40.0% | |
| !! | ACCATTGAAAGGGTGTTTGA+AGG | + | chr3_3:6676930-6676949 | Msa0440120:CDS | 40.0% |
| TCCTTCAAACACCCTTTCAA+TGG | - | chr3_3:6676934-6676953 | Msa0440110:intron | 40.0% | |
| AGATGTCGAAGAAGAAGTCA+AGG | + | chr3_3:6677002-6677021 | Msa0440120:CDS | 40.0% | |
| TCAGGATGCAGAAAAGATGA+AGG | + | chr3_3:6677026-6677045 | Msa0440120:CDS | 40.0% | |
| CAGGATGCAGAAAAGATGAA+GGG | + | chr3_3:6677027-6677046 | Msa0440120:CDS | 40.0% | |
| AGGATGCAGAAAAGATGAAG+GGG | + | chr3_3:6677028-6677047 | Msa0440120:CDS | 40.0% | |
| TCATTTCAGGATTCTGCTGT+TGG | + | chr3_3:6677118-6677137 | Msa0440120:CDS | 40.0% | |
| ! | GAATTCCGACAACCATTTTG+AGG | + | chr3_3:6677140-6677159 | Msa0440120:CDS | 40.0% |
| CAAAACAGAGTGTATGATCC+AGG | + | chr3_3:6677237-6677256 | Msa0440120:CDS | 40.0% | |
| TGAAGTAGAGTGACAGATCA+AGG | - | chr3_3:6677284-6677303 | Msa0440110:intron | 40.0% | |
| ! | TACTTCAAGTTATGGGATCC+TGG | + | chr3_3:6677297-6677316 | Msa0440120:CDS | 40.0% |
| AAGGCGAAGAAGACGCATAT+TGG | + | chr3_3:6676530-6676549 | Msa0440120:CDS | 45.0% | |
| TCTGCCAATTTCTCTGTCTC+TGG | - | chr3_3:6676598-6676617 | Msa0440110:intron | 45.0% | |
| ! | GTGCTCATCAATGGTGGTTT+TGG | + | chr3_3:6676641-6676660 | Msa0440120:CDS | 45.0% |
| !!! | CTCATCAATGGTGGTTTTGG+TGG | + | chr3_3:6676644-6676663 | Msa0440120:CDS | 45.0% |
| ! | CATTCGTCACTGCCTTTTTG+TGG | + | chr3_3:6676698-6676717 | Msa0440120:CDS | 45.0% |
| ! | CCCTTTCAATGGTTCTGCAA+TGG | - | chr3_3:6676923-6676942 | Msa0440110:intron | 45.0% |
| CGAAGAAGAAGTCAAGGTTC+AGG | + | chr3_3:6677008-6677027 | Msa0440120:CDS | 45.0% | |
| GGATGCAGAAAAGATGAAGG+GGG | + | chr3_3:6677029-6677048 | Msa0440120:CDS | 45.0% | |
| TGATGATAGGGCGAACACTA+AGG | - | chr3_3:6677071-6677090 | Msa0440110:intron | 45.0% | |
| !! | TTCCGACAACCATTTTGAGG+AGG | + | chr3_3:6677143-6677162 | Msa0440120:CDS | 45.0% |
| !! | TCCGACAACCATTTTGAGGA+GGG | + | chr3_3:6677144-6677163 | Msa0440120:CDS | 45.0% |
| ACCCTCCTCAAAATGGTTGT+CGG | - | chr3_3:6677148-6677167 | Msa0440110:intron | 45.0% | |
| AAAGAGAGTGAGGAAGCAGT+AGG | - | chr3_3:6677198-6677217 | Msa0440110:intron | 45.0% | |
| TGCTTCCTCACTCTCTTTCT+GGG | + | chr3_3:6677200-6677219 | Msa0440120:CDS | 45.0% | |
| GGAGCATGAAAACATATGCC+TGG | - | chr3_3:6677258-6677277 | Msa0440110:intron | 45.0% | |
| TAGAGTGACAGATCAAGGTG+TGG | - | chr3_3:6677279-6677298 | Msa0440110:intron | 45.0% | |
| ! | TTCAAGTTATGGGATCCTGG+AGG | + | chr3_3:6677300-6677319 | Msa0440120:CDS | 45.0% |
| GGATAACATAAGTGTCCTCC+AGG | - | chr3_3:6677318-6677337 | Msa0440110:intron | 45.0% | |
| AAGGCGAAGAAGACGCATAT+TGG | + | chr3_3:6676530-6676549 | Msa0440120:CDS | 45.0% | |
| TCTGCCAATTTCTCTGTCTC+TGG | - | chr3_3:6676598-6676617 | Msa0440110:intron | 45.0% | |
| ! | GTGCTCATCAATGGTGGTTT+TGG | + | chr3_3:6676641-6676660 | Msa0440120:CDS | 45.0% |
| !!! | CTCATCAATGGTGGTTTTGG+TGG | + | chr3_3:6676644-6676663 | Msa0440120:CDS | 45.0% |
| ! | CATTCGTCACTGCCTTTTTG+TGG | + | chr3_3:6676698-6676717 | Msa0440120:CDS | 45.0% |
| ! | CCCTTTCAATGGTTCTGCAA+TGG | - | chr3_3:6676923-6676942 | Msa0440110:intron | 45.0% |
| CGAAGAAGAAGTCAAGGTTC+AGG | + | chr3_3:6677008-6677027 | Msa0440120:CDS | 45.0% | |
| GGATGCAGAAAAGATGAAGG+GGG | + | chr3_3:6677029-6677048 | Msa0440120:CDS | 45.0% | |
| TGATGATAGGGCGAACACTA+AGG | - | chr3_3:6677071-6677090 | Msa0440110:intron | 45.0% | |
| !! | TTCCGACAACCATTTTGAGG+AGG | + | chr3_3:6677143-6677162 | Msa0440120:CDS | 45.0% |
| !! | TCCGACAACCATTTTGAGGA+GGG | + | chr3_3:6677144-6677163 | Msa0440120:CDS | 45.0% |
| ACCCTCCTCAAAATGGTTGT+CGG | - | chr3_3:6677148-6677167 | Msa0440110:intron | 45.0% | |
| AAAGAGAGTGAGGAAGCAGT+AGG | - | chr3_3:6677198-6677217 | Msa0440110:intron | 45.0% | |
| TGCTTCCTCACTCTCTTTCT+GGG | + | chr3_3:6677200-6677219 | Msa0440120:CDS | 45.0% | |
| GGAGCATGAAAACATATGCC+TGG | - | chr3_3:6677258-6677277 | Msa0440110:intron | 45.0% | |
| TAGAGTGACAGATCAAGGTG+TGG | - | chr3_3:6677279-6677298 | Msa0440110:intron | 45.0% | |
| ! | TTCAAGTTATGGGATCCTGG+AGG | + | chr3_3:6677300-6677319 | Msa0440120:CDS | 45.0% |
| GGATAACATAAGTGTCCTCC+AGG | - | chr3_3:6677318-6677337 | Msa0440110:intron | 45.0% | |
| GCGAAGAAGACGCATATTGG+TGG | + | chr3_3:6676533-6676552 | Msa0440120:CDS | 50.0% | |
| TGCGTGGATGTGCTCATCAA+TGG | + | chr3_3:6676632-6676651 | Msa0440120:CDS | 50.0% | |
| GTGGATGTGCTCATCAATGG+TGG | + | chr3_3:6676635-6676654 | Msa0440120:CDS | 50.0% | |
| ! | AACTTGCATGTGGATGACGG+CGG | - | chr3_3:6676672-6676691 | Msa0440110:intron | 50.0% |
| GCCAACTTGCATGTGGATGA+CGG | - | chr3_3:6676675-6676694 | Msa0440110:intron | 50.0% | |
| GGCAAGACGTCTCGATATTC+TGG | - | chr3_3:6676733-6676752 | Msa0440110:intron | 50.0% | |
| TCGAAGTCGTTGACGGTTCA+AGG | + | chr3_3:6676787-6676806 | Msa0440120:CDS | 50.0% | |
| GAACACTAAGGTTCACAGCG+AGG | - | chr3_3:6677059-6677078 | Msa0440110:intron | 50.0% | |
| CCGGCAAGGCAATGATGATA+GGG | - | chr3_3:6677083-6677102 | Msa0440110:intron | 50.0% | |
| CCCTATCATCATTGCCTTGC+CGG | + | chr3_3:6677080-6677099 | Msa0440120:CDS | 50.0% | |
| CCTATCATCATTGCCTTGCC+GGG | + | chr3_3:6677081-6677100 | Msa0440120:CDS | 50.0% | |
| CCTGAAATGACCGTGGAGAA+AGG | - | chr3_3:6677108-6677127 | Msa0440110:intron | 50.0% | |
| CCTTTCTCCACGGTCATTTC+AGG | + | chr3_3:6677105-6677124 | Msa0440120:CDS | 50.0% | |
| GCAGAATCCTGAAATGACCG+TGG | - | chr3_3:6677115-6677134 | Msa0440110:intron | 50.0% | |
| !! | GACAACCATTTTGAGGAGGG+TGG | + | chr3_3:6677147-6677166 | Msa0440120:CDS | 50.0% |
| ATTGGCCACCCTCCTCAAAA+TGG | - | chr3_3:6677155-6677174 | Msa0440110:intron | 50.0% | |
| CTGCTTCCTCACTCTCTTTC+TGG | + | chr3_3:6677199-6677218 | Msa0440120:CDS | 50.0% | |
| TTTGGCCCAGAAAGAGAGTG+AGG | - | chr3_3:6677208-6677227 | Msa0440110:intron | 50.0% | |
| GCGAAGAAGACGCATATTGG+TGG | + | chr3_3:6676533-6676552 | Msa0440120:CDS | 50.0% | |
| TGCGTGGATGTGCTCATCAA+TGG | + | chr3_3:6676632-6676651 | Msa0440120:CDS | 50.0% | |
| GTGGATGTGCTCATCAATGG+TGG | + | chr3_3:6676635-6676654 | Msa0440120:CDS | 50.0% | |
| ! | AACTTGCATGTGGATGACGG+CGG | - | chr3_3:6676672-6676691 | Msa0440110:intron | 50.0% |
| GCCAACTTGCATGTGGATGA+CGG | - | chr3_3:6676675-6676694 | Msa0440110:intron | 50.0% | |
| GGCAAGACGTCTCGATATTC+TGG | - | chr3_3:6676733-6676752 | Msa0440110:intron | 50.0% | |
| TCGAAGTCGTTGACGGTTCA+AGG | + | chr3_3:6676787-6676806 | Msa0440120:CDS | 50.0% | |
| GAACACTAAGGTTCACAGCG+AGG | - | chr3_3:6677059-6677078 | Msa0440110:intron | 50.0% | |
| CCGGCAAGGCAATGATGATA+GGG | - | chr3_3:6677083-6677102 | Msa0440110:intron | 50.0% | |
| CCCTATCATCATTGCCTTGC+CGG | + | chr3_3:6677080-6677099 | Msa0440120:CDS | 50.0% | |
| CCTATCATCATTGCCTTGCC+GGG | + | chr3_3:6677081-6677100 | Msa0440120:CDS | 50.0% | |
| CCTGAAATGACCGTGGAGAA+AGG | - | chr3_3:6677108-6677127 | Msa0440110:intron | 50.0% | |
| CCTTTCTCCACGGTCATTTC+AGG | + | chr3_3:6677105-6677124 | Msa0440120:CDS | 50.0% | |
| GCAGAATCCTGAAATGACCG+TGG | - | chr3_3:6677115-6677134 | Msa0440110:intron | 50.0% | |
| !! | GACAACCATTTTGAGGAGGG+TGG | + | chr3_3:6677147-6677166 | Msa0440120:CDS | 50.0% |
| ATTGGCCACCCTCCTCAAAA+TGG | - | chr3_3:6677155-6677174 | Msa0440110:intron | 50.0% | |
| CTGCTTCCTCACTCTCTTTC+TGG | + | chr3_3:6677199-6677218 | Msa0440120:CDS | 50.0% | |
| TTTGGCCCAGAAAGAGAGTG+AGG | - | chr3_3:6677208-6677227 | Msa0440110:intron | 50.0% | |
| GAAGTTGTGACTGCGTTGCG+TGG | + | chr3_3:6676616-6676635 | Msa0440120:CDS | 55.0% | |
| GCCGTCATCCACATGCAAGT+TGG | + | chr3_3:6676671-6676690 | Msa0440120:CDS | 55.0% | |
| CCCGGCAAGGCAATGATGAT+AGG | - | chr3_3:6677084-6677103 | Msa0440110:intron | 55.0% | |
| ATGACCGTGGAGAAAGGACC+CGG | - | chr3_3:6677102-6677121 | Msa0440110:intron | 55.0% | |
| ! | GGGTGGCCAATGTCGTTTGA+TGG | + | chr3_3:6677164-6677183 | Msa0440120:CDS | 55.0% |
| GAAGTTGTGACTGCGTTGCG+TGG | + | chr3_3:6676616-6676635 | Msa0440120:CDS | 55.0% | |
| GCCGTCATCCACATGCAAGT+TGG | + | chr3_3:6676671-6676690 | Msa0440120:CDS | 55.0% | |
| CCCGGCAAGGCAATGATGAT+AGG | - | chr3_3:6677084-6677103 | Msa0440110:intron | 55.0% | |
| ATGACCGTGGAGAAAGGACC+CGG | - | chr3_3:6677102-6677121 | Msa0440110:intron | 55.0% | |
| ! | GGGTGGCCAATGTCGTTTGA+TGG | + | chr3_3:6677164-6677183 | Msa0440120:CDS | 55.0% |
| CTTGCCGGGTCCTTTCTCCA+CGG | + | chr3_3:6677095-6677114 | Msa0440120:CDS | 60.0% | |
| CTTGCCGGGTCCTTTCTCCA+CGG | + | chr3_3:6677095-6677114 | Msa0440120:CDS | 60.0% | |
| CGTGGAGAAAGGACCCGGCA+AGG | - | chr3_3:6677097-6677116 | Msa0440110:intron | 65.0% | |
| CGTGGAGAAAGGACCCGGCA+AGG | - | chr3_3:6677097-6677116 | Msa0440110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 6676511 | 6677347 | 6676511 | ID=Msa0440120;Name=Msa0440120 |
| chr3_3 | mRNA | 6676511 | 6677347 | 6676511 | ID=Msa0440120-mRNA-1;Parent=Msa0440120;Name=Msa0440120-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|-1|0|1|-1|1|1|0|278 |
| chr3_3 | exon | 6676511 | 6677347 | 6676511 | ID=Msa0440120-mRNA-1:exon:1419;Parent=Msa0440120-mRNA-1 |
| chr3_3 | CDS | 6676511 | 6677347 | 6676511 | ID=Msa0440120-mRNA-1:cds;Parent=Msa0440120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
